BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031930
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZS51|PMP22_ARATH Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22
PE=1 SV=1
Length = 190
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/142 (70%), Positives = 116/142 (81%), Gaps = 2/142 (1%)
Query: 1 MGSIAKK--GLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVL 58
MGS K LQ+YL QLQQHPLRTKAITAGVLS +SD+V+QKL+GIQK+QLRR+LLKV+
Sbjct: 1 MGSSPPKKTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVI 60
Query: 59 FGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGR 118
F +LGP GHF H LDK FKGKKDT TVAKKV+LEQLT SP N+L+FMIYYGVV+E
Sbjct: 61 FAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERT 120
Query: 119 PWRDVKTKIKKDYPTVQYTSWT 140
PW V+ +IKK YPTVQ T+WT
Sbjct: 121 PWTLVRERIKKTYPTVQLTAWT 142
>sp|Q54GD8|PX24C_DICDI PXMP2/4 family protein 3 OS=Dictyostelium discoideum
GN=DDB_G0290223 PE=3 SV=1
Length = 184
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 83/140 (59%), Gaps = 9/140 (6%)
Query: 12 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFL 71
Y+ +L+ P++TKA+T+ LS IS +VAQK +K+ ++ ++G P H+
Sbjct: 17 YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGLIS-SPLVHYW 75
Query: 72 HLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV--VVEGRPWRDVKTKIKK 129
H+ILD++FK KD K++++QL +P+ N+ F Y V +++G+P + + K+
Sbjct: 76 HIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAF---YSVLAILDGKP-KSILFKLYF 131
Query: 130 D-YPTVQYTSWTVLLLSLIV 148
D +PT++ SW V L+ ++
Sbjct: 132 DLFPTLK-ASWKVWPLAQLI 150
>sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum
GN=DDB_G0290631 PE=3 SV=1
Length = 185
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKL----TGIQKLQLRRLLLKVLFGCAYLG 65
YL QL ++P+ TKA+T+G L ISD + Q + +K +R + +FG A G
Sbjct: 13 SHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTG 72
Query: 66 PFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKT 125
P H+ LDK F KK K+ ++Q+ SP N +F G ++EG+ D+
Sbjct: 73 PLFHYWFKYLDKHFP-KKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGKSKDDIVE 130
Query: 126 KIKKDYPTVQYTSWTV 141
K+KKD+ T + V
Sbjct: 131 KLKKDWLTTYVSDCVV 146
>sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3
Length = 196
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 80/149 (53%), Gaps = 11/149 (7%)
Query: 1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQ-------KLTGIQKLQLRRL 53
+G + ++ L QYL L+ +P+ TKA T+G+LSA+ + +AQ K QKL +
Sbjct: 14 LGPLPRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGP 73
Query: 54 LLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP-WNNLMFMIYYG 112
L ++G + GP GHF +L++++ + + + K+++L++L +P + +L F++
Sbjct: 74 LRYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGI-KRLLLDRLLFAPAFLSLFFLVMN- 131
Query: 113 VVVEGRPWRDVKTKIKKDYPTVQYTSWTV 141
+EG+ K+K + +W V
Sbjct: 132 -FLEGQDTAAFAAKMKSGFWPALRMNWRV 159
>sp|Q5BK62|MPV17_RAT Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1
Length = 176
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
+ Y L HP + + +TAG L + DI++Q+L G+Q+ Q R L GC ++GP
Sbjct: 5 RAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQQHQTGRTLTMASLGCGFVGP 64
Query: 67 FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTK 126
+ +LD + G + + KK++L+Q +P F+ G V+ G +D K
Sbjct: 65 VVGGWYRVLDHLIPGTTKVNAL-KKMLLDQGGFAPCFLGCFLPLVG-VLNGMSAQDNWAK 122
Query: 127 IKKDYPTVQYTSW 139
+K+DYP T++
Sbjct: 123 LKRDYPDALITNY 135
>sp|P19258|MPV17_MOUSE Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1
Length = 176
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
+ Y L HP + + +TAG L + D+++Q+L G+Q+ Q R L V GC ++GP
Sbjct: 5 RAYQRALAAHPWKVQVLTAGSLMGVGDMISQQLVERRGLQQHQAGRTLTMVSLGCGFVGP 64
Query: 67 FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTK 126
+ +LD + G + KK++L+Q +P F+ G ++ G +D K
Sbjct: 65 VVGGWYKVLDHLIPGTTKVHAL-KKMLLDQGGFAPCFLGCFLPLVG-ILNGMSAQDNWAK 122
Query: 127 IKKDYPTVQYTSW 139
+K+DYP T++
Sbjct: 123 LKRDYPDALITNY 135
>sp|Q07066|PXMP2_RAT Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1
SV=2
Length = 194
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 84/148 (56%), Gaps = 10/148 (6%)
Query: 3 SIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQK-----LQLRRLLLKV 57
S+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ + QK L++ LL +
Sbjct: 16 SLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYL 75
Query: 58 LFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEG 117
++G GP H+L+L ++ + + V K+++L++L +P L+ + ++EG
Sbjct: 76 VYGLFVTGPLSHYLYLFMEYWVPPEVPWARV-KRLLLDRLFFAP-TFLLLFFFVMNLLEG 133
Query: 118 RPWRDVKTKIKKDY-PTVQ--YTSWTVL 142
+ K++ + P +Q + WT L
Sbjct: 134 KNISVFVAKMRSGFWPALQMNWRMWTPL 161
>sp|P39210|MPV17_HUMAN Protein Mpv17 OS=Homo sapiens GN=MPV17 PE=1 SV=1
Length = 176
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
+ Y L HP + + +TAG L + DI++Q+L G+Q+ Q R L V GC ++GP
Sbjct: 5 RAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQEHQRGRTLTMVSLGCGFVGP 64
Query: 67 FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTK 126
+ +LD+ G + KK++L+Q +P F+ G + G +D K
Sbjct: 65 VVGGWYKVLDRFIPGTTKVDAL-KKMLLDQGGFAPCFLGCFLPLVG-ALNGLSAQDNWAK 122
Query: 127 IKKDYPTVQYTSW 139
+++DYP T++
Sbjct: 123 LQRDYPDALITNY 135
>sp|Q2KIN6|MPV17_BOVIN Protein Mpv17 OS=Bos taurus GN=MPV17 PE=2 SV=1
Length = 176
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
+ Y L HP + + +TAG L + D+++Q+L G+Q Q R L GC ++GP
Sbjct: 5 RAYQRALTAHPWKVQVLTAGSLMGLGDVISQQLVERRGLQAHQAGRTLTMASLGCGFVGP 64
Query: 67 FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTK 126
+ +LD++ G + KK++L+Q +P F+ G + G +D K
Sbjct: 65 VVGGWYRVLDRLIPGTTKVDAL-KKMLLDQGGFAPCFLGCFLPLVG-TLNGLSAQDNWAK 122
Query: 127 IKKDYPTVQYTSW 139
+++D+P T++
Sbjct: 123 LQRDFPDALITNY 135
>sp|Q9NR77|PXMP2_HUMAN Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3
Length = 195
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRR------LL 54
+G++ ++ L QYL+ L+ +P+ TKA T+G+LSA+ + +AQ + +K + R L
Sbjct: 14 LGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPL 73
Query: 55 LKVLFGCAYLGPFGHFLHLILD 76
++G + GP HF + ++
Sbjct: 74 RYAVYGFFFTGPLSHFFYFFME 95
>sp|Q7SCY7|SYM1_NEUCR Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A
/ CBS 708.71 / DSM 1257 / FGSC 987) GN=sym-1 PE=3 SV=2
Length = 172
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 12/139 (8%)
Query: 9 LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLG 65
L Y QL PL T+A+T +L + D+ AQ+L G+ L R VL+G A G
Sbjct: 2 LSWYKAQLAARPLLTQAVTTSILFGVGDVAAQQLVDRRGLSNHDLTRTGRMVLYGGAVFG 61
Query: 66 PFG-HFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYG--VVVEGRPWRD 122
P + + ++ T+ +V +Q +P I+ G V+EG D
Sbjct: 62 PAATTWFRFLQKRVVVPGSTNKTILARVAADQGLFAP---TFIGIFLGSMAVLEG---TD 115
Query: 123 VKTKIKKDYPTVQYTSWTV 141
VK K++K+Y T+W V
Sbjct: 116 VKEKLQKNYWEALSTNWMV 134
>sp|Q54XX9|PX24B_DICDI PXMP2/4 family protein 2 OS=Dictyostelium discoideum
GN=DDB_G0278529 PE=3 SV=1
Length = 193
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 12 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLT-------GIQKLQLRRLLLKVLFGCAYL 64
YL L HPL TK+++ G L DI+AQ+L KL +R+ G Y
Sbjct: 8 YLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMSTVGIFYS 67
Query: 65 GPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSP 101
GP H+ + LD + KG + S + KK++++QL +P
Sbjct: 68 GPMLHYWYRSLDIMVKG-EGRSVIIKKMLIDQLLFAP 103
>sp|Q54ZX5|PX24A_DICDI PXMP2/4 family protein 1 OS=Dictyostelium discoideum
GN=DDB_G0277335 PE=3 SV=1
Length = 202
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGH 69
Y LQ P+ TK++T V+ + D +AQK+ + +R L+ G + P H
Sbjct: 11 NSYKKSLQNRPVITKSLTGTVVFFLGDTLAQKIEN-RGYDPKRTLMMCTVGTFIVVPQIH 69
Query: 70 FLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFM-----IYYGVVVEGRPWRDVK 124
F LDK F K + KVV++QLT P+ + M + G + W+D
Sbjct: 70 FWFKFLDKTFT-KPGWAGAIPKVVVDQLTFGPYLFVCNMTSVQLFHQGFNFDTHQWKD-- 126
Query: 125 TKIKKDYPTVQYTSWTVLLLS 145
K+KKD+ V +W + L+
Sbjct: 127 -KMKKDFFPVLQKAWMIWPLT 146
>sp|O14142|SYM1_SCHPO Protein sym1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sym1 PE=3 SV=1
Length = 206
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 22/160 (13%)
Query: 11 QYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT----------GIQKLQL---------R 51
+Y ++ P+ T +TAG L ISD VAQ LT G+ ++L +
Sbjct: 8 RYNALFEKAPIMTMCLTAGTLGGISDAVAQGLTIYQTNKNAMIGLDGVRLNTHPEIPSIK 67
Query: 52 RLLLKVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYY 111
R+L V FG A + PF +L F +K V K+V+L+Q +P+ F +
Sbjct: 68 RVLQFVTFGFA-ISPFQFRWLRLLSAKFPIEKGAINVVKRVLLDQAVFAPFGTAFFFSWM 126
Query: 112 GVVVEGRPWRDVKTKIKKDY-PTVQYTSWTVLLLSLIVFW 150
+ EG+ +R K++ + PT++ + FW
Sbjct: 127 -TLAEGKGFRGAYDKLQAVFWPTLKANYMVWPFFQTVNFW 165
>sp|A5D787|M17L2_BOVIN Mpv17-like protein 2 OS=Bos taurus GN=MPV17L2 PE=2 SV=1
Length = 218
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 21 LRTKAITAGVLSAISDIVAQ----KLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILD 76
L T + GVL A D Q + QK RR + GC+ +GPF H+ +L LD
Sbjct: 26 LVTNTLGCGVLMAAGDGARQTWEIRARPGQKFDPRRSVSMFAVGCS-MGPFLHYWYLWLD 84
Query: 77 KIF--KGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYY 111
++F G V KKV+++QL +SP M ++Y
Sbjct: 85 RLFPASGFPGLPNVLKKVLIDQLVASP----MLGVWY 117
>sp|Q6CIY7|SYM1_KLULA Protein SYM1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SYM1 PE=3
SV=1
Length = 195
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 9 LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGI-----QKLQLRRLLLKVLFGCAY 63
+ Y +++ P T I G L I D++AQ G QK L R + V++G
Sbjct: 5 VNWYTASVKRSPRLTNGIMTGSLFGIGDVIAQ--VGFPEKKGQKYDLARTVRAVVYGSLI 62
Query: 64 LGPFGHFLHLILDK--IFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV--VVEGRP 119
G + L++ I K K + A +V +QL +P + +YYGV ++EG+
Sbjct: 63 FSIIGDSWYKFLNQKVIVKPGKHWTNTAARVGCDQLLFAP---VGIPMYYGVMSILEGKS 119
Query: 120 WRDVKTKIKKDYPTVQYTSWTV 141
D K KI+ ++ T+W V
Sbjct: 120 LVDAKKKIEDNWWPTLVTNWYV 141
>sp|Q66GV0|MPV17_XENLA Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2
Length = 177
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 5/129 (3%)
Query: 16 LQQHPLRTKAITAGVLSAISDIVAQKL---TGIQKLQLRRLLLKVLFGCAYLGPFGHFLH 72
L HP + + +TAG L + D+++Q+L G++ + R + + G ++GP +
Sbjct: 12 LGAHPWKVQIVTAGSLVGVGDVISQQLLERKGLKGHSIERTVKMMGIGFCFVGPVVGGWY 71
Query: 73 LILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYP 132
ILD+I G + KK++L+Q+ +P L + + G + K+K+DY
Sbjct: 72 KILDRIIPGSGKPVAL-KKMLLDQVAFAP-CFLGCFLSIASALNGLSGEQIWGKLKRDYK 129
Query: 133 TVQYTSWTV 141
T++ +
Sbjct: 130 DALITNYYI 138
>sp|P42925|PXMP2_MOUSE Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=2 SV=2
Length = 194
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 87/150 (58%), Gaps = 10/150 (6%)
Query: 1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQK-----LQLRRLLL 55
+GS+ K+ L QYL+ L+ +P+ TKA+++G+LSA+ +++AQ + Q+ L++ LL
Sbjct: 14 LGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLR 73
Query: 56 KVLFGCAYLGPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVV 115
+++G GP H+L+L ++ + ++V K+++L++L +P L+F ++
Sbjct: 74 YLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASV-KRLLLDRLFFAPTFLLLFFFVMN-LL 131
Query: 116 EGRPWRDVKTKIKKDY-PTVQ--YTSWTVL 142
EG+ K++ + P +Q + WT L
Sbjct: 132 EGKNVSVFVAKMRSGFWPALQMNWRMWTPL 161
>sp|Q6DIY8|M17L2_XENTR Mpv17-like protein 2 OS=Xenopus tropicalis GN=mpv17l2 PE=2 SV=1
Length = 222
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 23 TKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKV----LFGCAYLGPFGHFLHLILDKI 78
T ++ G+L I D + Q + + +R L+ GC+ +GP HF + LD+
Sbjct: 28 TNTVSCGLLLGIGDSIQQSREVRRDPERKRDWLRTGRMFAIGCS-MGPLMHFWYSWLDRS 86
Query: 79 FKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEG----RPWRDVKTKIKKDYPTV 134
F G+ T V +KV+++QL +SP L + + G +EG + W++ + K + Y
Sbjct: 87 FPGRGIT-VVMRKVLIDQLVASPVLGLWYFLGMG-SMEGQKLEKSWQEFREKFWEFY-KA 143
Query: 135 QYTSW 139
+T W
Sbjct: 144 DWTVW 148
>sp|Q5TZ51|MPV17_DANRE Protein Mpv17 OS=Danio rerio GN=mpv17 PE=2 SV=1
Length = 177
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGP 66
+ Y + +HP + + ITAG L + D+++Q+L G+ RR + G ++GP
Sbjct: 6 RSYQALMAKHPWKVQIITAGSLVGVGDVISQQLIERRGLANHNARRTAKMMSIGFFFVGP 65
Query: 67 FGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTK 126
+ +LDK+ G ++ + KK++++Q+ +P F+ G + G + K
Sbjct: 66 VVGGWYKVLDKLVTGGTKSAAL-KKMLVDQVGFAPCFLGAFLGITG-TLNGLTVEENVAK 123
Query: 127 IKKDY 131
+++DY
Sbjct: 124 LQRDY 128
>sp|Q567V2|M17L2_HUMAN Mpv17-like protein 2 OS=Homo sapiens GN=MPV17L2 PE=1 SV=2
Length = 206
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 21 LRTKAITAGVLSAISDIVAQ----KLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILD 76
L T + G L A D V Q + Q RR GC+ +GPF H+ +L LD
Sbjct: 26 LVTNTLGCGALMAAGDGVRQSWEIRARPGQVFDPRRSASMFAVGCS-MGPFLHYWYLSLD 84
Query: 77 KIF--KGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTV 134
++F G + V KKV+++QL +SP + + + G +EG+ + ++++ +
Sbjct: 85 RLFPASGLRGFPNVLKKVLVDQLVASPLLGVWYFLGLG-CLEGQTVGESCQELREKFWEF 143
Query: 135 QYTSWTV 141
W V
Sbjct: 144 YKADWCV 150
>sp|Q8VIK2|M17L2_MOUSE Mpv17-like protein 2 OS=Mus musculus GN=Mpv17l2 PE=1 SV=1
Length = 200
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 21 LRTKAITAGVLSAISDIVAQ----KLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILD 76
L T + GVL A D Q + Q+ RR GC+ +GPF HF +L LD
Sbjct: 26 LLTNTLGCGVLMAAGDGARQVWEVRARPGQRFSARRSASMFAVGCS-MGPFLHFWYLWLD 84
Query: 77 KIF--KGKKDTSTVAKKVVLEQLTSSP 101
++ G + +V KKV+++Q +SP
Sbjct: 85 RLLPASGLRSLPSVMKKVLVDQTVASP 111
>sp|Q6DGV7|M17L2_DANRE Mpv17-like protein 2 OS=Danio rerio GN=mpv17l2 PE=2 SV=1
Length = 199
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 23 TKAITAGVLSAISDIVAQ----KLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLILDKI 78
T ++ G + A D++ Q + T + R GC+ +GPF H+ + LDK
Sbjct: 29 TNTVSCGGMLAAGDLIQQTREIRRTPGRTRDWSRTGCMFAVGCS-MGPFMHYWYQWLDKY 87
Query: 79 FKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYTS 138
F G + V KKV+++QL +SP + + G ++EG + + + + + +
Sbjct: 88 FIG-NGINNVCKKVLVDQLVASPTLGAWYFLGMG-MMEGHTFIEAQQEFRDKFWEFYKAD 145
Query: 139 WTV 141
W V
Sbjct: 146 WCV 148
>sp|Q06563|SYM1_YEAST Protein SYM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SYM1 PE=1 SV=1
Length = 197
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 7 KGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQ----LRRLLLKVLFGCA 62
K L Y L++ P T AI G L I D+ AQ L K+ +R V++G
Sbjct: 2 KLLHLYEASLKRRPKTTNAIMTGALFGIGDVSAQLLFPTSKVNKGYDYKRTARAVIYGSL 61
Query: 63 YLGPFGHFLHLILD-KIFKGKKDT---STVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGR 118
G + IL+ KI+ + S + +V ++QL +P L F ++EGR
Sbjct: 62 IFSFIGDKWYKILNNKIYMRNRPQYHWSNMVLRVAVDQLAFAPLG-LPFYFTCMSIMEGR 120
Query: 119 PWRDVKTKIKKDYPTVQYTSWTV 141
+ K KIK+ + T+W V
Sbjct: 121 SFDVAKLKIKEQWWPTLLTNWAV 143
>sp|Q754F0|SYM1_ASHGO Protein SYM1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=SYM1 PE=3 SV=1
Length = 182
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 17/145 (11%)
Query: 12 YLIQLQQHPLRTKAITAGVLSAISDIVAQK--LTGIQKLQLRRLLLKVLFGCAYLGPFGH 69
Y LQ HP RT A+T G L + DIVAQ R L L+G G
Sbjct: 8 YKASLQSHPKRTNALTTGFLFGLGDIVAQTQFPEPGASYDPMRTLRPFLYGAVLFSLVGD 67
Query: 70 FLHLILDKIFKGK---KDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVV--VEGRPWRDVK 124
+ L + G+ + V +V +QL +P + +YY + +EG DV+
Sbjct: 68 KWYRFLSTVRLGRLPQAHWANVLARVACDQLIFAP---IGVPLYYTAMALMEGGSLEDVR 124
Query: 125 TKIKKDYPTVQYTSWTVLLLSLIVF 149
++ + + W+ LL + IV+
Sbjct: 125 IRLSEKW-------WSTLLANWIVW 142
>sp|Q6BMY0|SYM1_DEBHA Protein SYM1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767
/ JCM 1990 / NBRC 0083 / IGC 2968) GN=SYM1 PE=3 SV=1
Length = 206
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 10 QQYLIQLQQHPLRTKAITAGVLSAISDIVAQKL-TGIQKLQLRRLLLKVLFGCAYLGPFG 68
Q+Y + + PL T IT G L D +AQ L K +R L +G P G
Sbjct: 6 QKYSQLIAKRPLITNIITTGFLFGSGDYLAQTLYPSSSKYDYKRTLRATFYGSIIFAPIG 65
Query: 69 HFLHLILDKI---FKGKKDTSTVAK------KVVLEQLTSSPWNNLMFMIYYGVV----V 115
+ +L KI F K + TV+K KV ++QL +P+ + +YY V+
Sbjct: 66 DKWYRLLHKINFPFPKTKVSPTVSKVLNTLTKVGVDQLVFAPF--IGIPLYYSVMSVLEF 123
Query: 116 EGRPWRDVKTKIKKDYPTVQYTSWTV 141
P + + K+ + T+W V
Sbjct: 124 HDNPLQVAREKLHAHWFNTLKTNWVV 149
>sp|Q7YWV6|MPV17_CAEEL Mpv17-like protein OS=Caenorhabditis elegans GN=T18D3.9 PE=3 SV=1
Length = 181
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 15 QLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFGHFLHLI 74
+L +PL T+ AG +S D +AQ L+ Q+ R ++ P +
Sbjct: 10 RLATNPLSTQMCIAGTISGSGDCLAQYLSHNQEWDRWRTARFSFLSSCFMAPSLFIWFRL 69
Query: 75 LDKIFKGKKDTSTVAKKVVLEQLTSSP 101
L+K+ KG + + KK+ ++QL SP
Sbjct: 70 LEKV-KGNNKSLLLVKKLCIDQLCFSP 95
>sp|Q60SZ2|MPV17_CAEBR Mpv17-like protein (Fragment) OS=Caenorhabditis briggsae
GN=CBG20693 PE=3 SV=2
Length = 181
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 9 LQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFGCAYLGPFG 68
L+ + L + PL T+ I +G + D Q LTG + +R ++ P
Sbjct: 4 LRTFNATLARRPLATQVIVSGAVCGAGDAFTQYLTGQKSWDYKRTARFTCLAAVFIAPPL 63
Query: 69 HFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIK 128
+ +L+++ + + V ++ ++Q SP+ N + ++ ++EG + K+K
Sbjct: 64 NVWFRVLERV-RHSNRHAQVFSRMSIDQFMFSPFFNAIILVNLR-LLEGFSFSKSVDKMK 121
Query: 129 KDYPTVQYTS 138
D+ V YTS
Sbjct: 122 NDWYDV-YTS 130
>sp|Q68F62|MP17L_XENLA Mpv17-like protein OS=Xenopus laevis GN=mpv17l PE=2 SV=1
Length = 203
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 13 LIQL-QQHPLRTKAITAGVLSAISDIVAQKL--TGIQKLQLRRLLLKVLFGCAYLGPFGH 69
LIQ ++HP T G L A +DIV QKL + + + ++ L G + F
Sbjct: 4 LIQFTKRHPWLTNVTIYGSLFASADIVQQKLSKSPTEPIDFKQTAKVGLVGFCFHANFNF 63
Query: 70 FLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV-VVEGRPWRDVKTKIK 128
F +++ F G + V +KV +QL ++P F Y G+ +++G RDV +K
Sbjct: 64 FWLRFIERTFPGSAPLN-VIRKVACDQLMAAPITISAF--YTGLSLLDGE--RDVFKNLK 118
Query: 129 KDY-PTVQ--YTSWTVL 142
+ + PT + WTV
Sbjct: 119 EKFWPTYKTGVMCWTVF 135
>sp|Q4P9K6|SYM1_USTMA Protein SYM1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SYM1
PE=3 SV=1
Length = 199
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 11/133 (8%)
Query: 13 LIQLQQHPLRTKAITAGVLSAISDIVAQKLT---GIQKLQLRRLLLKVLFGCAYLGPFGH 69
LI + +T GVL A D +AQ+L G + R L + GC +
Sbjct: 7 LIAATSSTFPRQCLTGGVLFATGDTIAQQLVEKRGSRHDLARTFRLSLYGGCVFSPLASI 66
Query: 70 FLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWNNLMFMIYYGV--VVEGRPWRDVKTKI 127
+ +L+++ + + +A KV L+Q +SP +++G ++EG K KI
Sbjct: 67 WFGRVLERV-RFSSKAANIATKVALDQAIASP---AFVALFFGATTIMEGGSPDQAKNKI 122
Query: 128 KKD-YPTVQYTSW 139
+ +PT++ T+W
Sbjct: 123 IHNWWPTLK-TAW 134
>sp|P75440|Y338_MYCPN Uncharacterized protein MG242 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_338 PE=4 SV=1
Length = 632
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 19/150 (12%)
Query: 12 YLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKL-----QLRRLLLKVLFGCAYLGP 66
YLI++ +H K + A +S D+ AQ L+G L QL + LF YL
Sbjct: 126 YLIEINKHSYLRKYVNAIRISFFLDLRAQILSGSFTLDVINKQLEHQNKEELFQAIYLRS 185
Query: 67 F-GHFLH-----LILDKIFKGKKDTSTVAKKVVLEQLT--SSPWNNLMFMIYYGVVVEGR 118
HF+ + L+ G K+ K V ++L+ + WN + F Y+ V + +
Sbjct: 186 LIKHFISNQLYPISLNSFIFGDKNREN--KTVENDKLSVLKNNWNQIFFSKYFDFVAKNK 243
Query: 119 PWRDVKTKIKKDYPTVQYTSWTVLLLSLIV 148
R V + + Y + LL+ LI+
Sbjct: 244 EERVVDNNCDELF----YATMNTLLIMLII 269
>sp|B8E247|DXS_DICTD 1-deoxy-D-xylulose-5-phosphate synthase OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=dxs PE=3 SV=1
Length = 618
Score = 30.0 bits (66), Expect = 5.6, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 1 MGSIAKKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTGIQKLQLRRLLLKVLFG 60
+ + K L ++ Q Q+ L+ +I G+L+ D+ ++ ++ L L + + L G
Sbjct: 188 LAKLRKHPLYRFFKQTTQNLLKNSSIGKGLLAF--DLKLER--SLKSLLLENPMFEYL-G 242
Query: 61 CAYLGPF-GHFLHLILDKIFKGKKD 84
Y GPF GH + L++ +FKG KD
Sbjct: 243 FKYFGPFDGHDIPLLI-SVFKGIKD 266
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 54 LLKVLFGCAYLGPF--GHFLHLILDKIFKGKKDTSTVAKKVV 93
+L +L CA+LG G ++H+ +DK KG + S++ ++
Sbjct: 370 MLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLI 411
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,761,076
Number of Sequences: 539616
Number of extensions: 1786762
Number of successful extensions: 5494
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5453
Number of HSP's gapped (non-prelim): 35
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)