Query 031930
Match_columns 150
No_of_seqs 162 out of 1046
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 11:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 41.2 10 0.00036 24.3 1.3 26 33-58 31-57 (118)
2 2ksd_A Aerobic respiration con 21.3 7.2 0.00025 26.0 -2.2 73 6-79 5-81 (115)
3 1p58_D Envelope protein M; fla 16.7 1.9E+02 0.0066 17.4 4.1 35 7-42 27-61 (75)
4 2qho_B E3 ubiquitin-protein li 14.4 1.1E+02 0.0037 17.1 2.0 17 114-130 19-35 (53)
5 1fs1_B SKP1, cyclin A/CDK2-ass 13.3 2.2E+02 0.0075 18.8 3.8 18 114-131 120-139 (141)
6 2kii_A Putative uncharacterize 13.0 2.3E+02 0.0079 19.6 4.0 71 65-137 3-79 (181)
7 2cmx_A ORF F-112, F112, hypoth 12.6 69 0.0024 20.8 0.9 25 34-58 32-57 (118)
8 1rh5_B Preprotein translocase 12.2 1.9E+02 0.0066 17.4 2.9 27 47-73 31-57 (74)
9 3mp7_B Preprotein translocase 11.5 2.2E+02 0.0076 16.4 2.9 26 47-72 27-52 (61)
10 1m93_A Serine proteinase inhib 11.3 75 0.0026 17.7 0.7 16 95-110 14-29 (55)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=41.22 E-value=10 Score=24.26 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=19.6
Q ss_pred HHHHHHHHhHhc-CCchhhHHHHHHHH
Q 031930 33 AISDIVAQKLTG-IQKLQLRRLLLKVL 58 (150)
Q Consensus 33 ~~gD~~aQ~~~~-~~~~D~~R~~~~~~ 58 (150)
.+-|++||.-.. ...++..|++++.+
T Consensus 31 sledilaqfeis~~sayniqr~l~~ic 57 (118)
T 2vqc_A 31 TLEDILAQFEISVPSAYNIQRALKAIC 57 (118)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHH
Confidence 357999997432 45789999999865
No 2
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=21.33 E-value=7.2 Score=26.04 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHhHhc---CCchhhHHHHHHHHHhhhhhchhhhHHHHHH-Hhhc
Q 031930 6 KKGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKLTG---IQKLQLRRLLLKVLFGCAYLGPFGHFLHLIL-DKIF 79 (150)
Q Consensus 6 ~~~~~~Y~~~l~~~Pl~t~~~ts~~l~~~gD~~aQ~~~~---~~~~D~~R~~~~~~~G~~~~gP~~h~wy~~L-~~~~ 79 (150)
+..-+.|-+++.|--...-++.+.++..+-+++.|.... .+++++.-..|-.++|.+ .+|+.-|++..+ |+.-
T Consensus 5 k~~aq~yvd~v~rlG~~rfSlL~~~~l~v~A~~~q~~~~~~~~G~v~~~Di~rsI~Fgli-~aP~viYFls~vVe~LE 81 (115)
T 2ksd_A 5 RLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQVESIDVIRSIFFGLL-ITPWAVYFLSVVVEQLE 81 (115)
T ss_dssp ----------CCCSSTTSSCCSHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCSTTTHHHH-HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHhhhhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 345566777777777777777788888888999998752 355666656666778875 899988888654 5443
No 3
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=16.70 E-value=1.9e+02 Score=17.43 Aligned_cols=35 Identities=20% Similarity=0.076 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHhH
Q 031930 7 KGLQQYLIQLQQHPLRTKAITAGVLSAISDIVAQKL 42 (150)
Q Consensus 7 ~~~~~Y~~~l~~~Pl~t~~~ts~~l~~~gD~~aQ~~ 42 (150)
+=..+-++..-|||..+-++. .+...+|+...|++
T Consensus 27 ~~l~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrv 61 (75)
T 1p58_D 27 KHAQRIETWILRHPGFTIMAA-ILAYTIGTTHFQRV 61 (75)
T ss_pred HHHHHHHHHHHHChHHHHHHH-HHHHHHcCChHHHH
Confidence 445667788889999888877 77788898888876
No 4
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=14.42 E-value=1.1e+02 Score=17.12 Aligned_cols=17 Identities=12% Similarity=0.411 Sum_probs=14.7
Q ss_pred HhcCCChHHHHHHHHhc
Q 031930 114 VVEGRPWRDVKTKIKKD 130 (150)
Q Consensus 114 ~l~g~~~~~~~~~~~~~ 130 (150)
+++|+|-+-|..++++.
T Consensus 19 VLqgksR~vIirELqrT 35 (53)
T 2qho_B 19 VLQGKSRSVIIRELQRT 35 (53)
T ss_dssp HSTTCCHHHHHHHHHHT
T ss_pred HhcCCcHHHHHHHHHHh
Confidence 89999988898888875
No 5
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=13.30 E-value=2.2e+02 Score=18.81 Aligned_cols=18 Identities=22% Similarity=0.689 Sum_probs=10.7
Q ss_pred HhcCCChHHHHHH--HHhcC
Q 031930 114 VVEGRPWRDVKTK--IKKDY 131 (150)
Q Consensus 114 ~l~g~~~~~~~~~--~~~~~ 131 (150)
.++|||.+++.+. ++++|
T Consensus 120 ~ikgkt~eeiR~~f~I~~d~ 139 (141)
T 1fs1_B 120 MIKGKTPEEIRKTFNIKNDF 139 (141)
T ss_dssp HHTTCCHHHHHHHTC-----
T ss_pred HHcCCCHHHHHHHcCCCCCC
Confidence 6889999988773 44444
No 6
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=13.02 E-value=2.3e+02 Score=19.58 Aligned_cols=71 Identities=8% Similarity=-0.120 Sum_probs=47.8
Q ss_pred chhhhHHHHHHHhhcCCCCchHHHHHHHHHhhhccchHH------HHHHHHHHHHHhcCCChHHHHHHHHhcCHHHHhh
Q 031930 65 GPFGHFLHLILDKIFKGKKDTSTVAKKVVLEQLTSSPWN------NLMFMIYYGVVVEGRPWRDVKTKIKKDYPTVQYT 137 (150)
Q Consensus 65 gP~~h~wy~~L~~~~~~~~~~~~~~~Kv~~Dq~v~~P~~------~~~f~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 137 (150)
|-++..|-.+++..++. ..+..+..+.-++.-++.|.- +.-.....+ -.-|.|.+++.+.+-+.+...+..
T Consensus 3 G~I~~~~~~~v~~~~G~-e~w~~i~~~a~~~~~~f~~~~~Y~D~~~~~lv~a~s-~~~g~~~~~ll~~fG~~~~~~~~~ 79 (181)
T 2kii_A 3 GIIFNVLEDMVVAQCGM-SVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVA-QRLNMPIQDVVKAFGQFLFNGLAS 79 (181)
T ss_dssp CHHHHHHHHHHHHHTCH-HHHHHHHHHHCCSSCCCCSSCCTTTTHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHcCH-HHHHHHHHHhCCCCCceeeccccCHHHHHHHHHHHH-HHHCcCHHHHHHHHHHHHHHHHHH
Confidence 55678888888888876 567777777777666676652 233333333 556888888888776666655543
No 7
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=12.64 E-value=69 Score=20.78 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=15.3
Q ss_pred HHHHHHHhH-hcCCchhhHHHHHHHH
Q 031930 34 ISDIVAQKL-TGIQKLQLRRLLLKVL 58 (150)
Q Consensus 34 ~gD~~aQ~~-~~~~~~D~~R~~~~~~ 58 (150)
+-|++||.= .....++..|++|+.+
T Consensus 32 ~eDIlaqfeIS~s~Ay~I~~~lk~iC 57 (118)
T 2cmx_A 32 LEDILAQFEISVPSAYNIQRALKAIC 57 (118)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhhhHHHHHHHHHH
Confidence 457777763 2234566777777654
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=12.22 E-value=1.9e+02 Score=17.37 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=21.4
Q ss_pred chhhHHHHHHHHHhhhhhchhhhHHHH
Q 031930 47 KLQLRRLLLKVLFGCAYLGPFGHFLHL 73 (150)
Q Consensus 47 ~~D~~R~~~~~~~G~~~~gP~~h~wy~ 73 (150)
.=++.+.++....|+++.|-+.+.-+-
T Consensus 31 r~EF~~iak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 31 KDEYLAVAKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999988766553
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=11.53 E-value=2.2e+02 Score=16.38 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=21.1
Q ss_pred chhhHHHHHHHHHhhhhhchhhhHHH
Q 031930 47 KLQLRRLLLKVLFGCAYLGPFGHFLH 72 (150)
Q Consensus 47 ~~D~~R~~~~~~~G~~~~gP~~h~wy 72 (150)
.=++.+.++....|+++.|-+.+.-+
T Consensus 27 ~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 27 WATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999998875544
No 10
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=11.29 E-value=75 Score=17.68 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=10.9
Q ss_pred hhhccchHHHHHHHHH
Q 031930 95 EQLTSSPWNNLMFMIY 110 (150)
Q Consensus 95 Dq~v~~P~~~~~f~~~ 110 (150)
+.++++|+.+..-+..
T Consensus 14 ~Ni~~SP~Si~~aLam 29 (55)
T 1m93_A 14 ENVFISPPSISSVLTI 29 (55)
T ss_dssp SCEEECHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHH
Confidence 3678999976654433
Done!