Query 031930
Match_columns 150
No_of_seqs 162 out of 1046
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 11:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031930.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031930hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 57.5 2 0.00015 23.8 1.3 26 33-58 22-48 (70)
2 d2v9va1 a.4.5.35 (A:377-437) C 24.5 21 0.0016 18.7 1.9 20 36-55 5-25 (61)
3 d3ct6a1 c.54.1.2 (A:1-123) PTS 18.8 62 0.0045 19.8 3.7 33 97-130 87-119 (123)
4 d1xrda1 f.3.1.1 (A:1-52) Light 17.0 74 0.0054 16.6 3.6 25 47-71 7-31 (52)
5 d1khda1 a.46.2.1 (A:12-80) Ant 16.7 79 0.0058 16.8 5.8 53 71-126 2-57 (69)
6 d1k3xa1 a.156.1.2 (A:125-213) 16.6 16 0.0012 21.2 0.3 19 87-105 27-45 (89)
7 d2g7la2 a.121.1.1 (A:87-230) P 13.3 80 0.0058 19.0 3.2 40 5-44 7-51 (144)
8 d1tdza1 a.156.1.2 (A:132-219) 13.2 28 0.002 20.1 0.8 19 87-105 23-41 (88)
9 d1ee8a1 a.156.1.2 (A:122-210) 13.0 33 0.0024 19.8 1.1 18 88-105 24-41 (89)
10 d1r2za1 a.156.1.2 (A:135-228) 12.5 31 0.0022 20.2 0.8 19 87-105 23-41 (94)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=57.51 E-value=2 Score=23.79 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=19.6
Q ss_pred HHHHHHHHhHhc-CCchhhHHHHHHHH
Q 031930 33 AISDIVAQKLTG-IQKLQLRRLLLKVL 58 (150)
Q Consensus 33 ~~gD~~aQ~~~~-~~~~D~~R~~~~~~ 58 (150)
.+-|++||.-.. ...++..|++++..
T Consensus 22 ~ledilaqfeis~~~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVPSAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHH
Confidence 357999997432 45789999999864
No 2
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=24.48 E-value=21 Score=18.67 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=14.7
Q ss_pred HHHHHhHh-cCCchhhHHHHH
Q 031930 36 DIVAQKLT-GIQKLQLRRLLL 55 (150)
Q Consensus 36 D~~aQ~~~-~~~~~D~~R~~~ 55 (150)
.++||.+. .++.+||...+.
T Consensus 5 kilaqiiqehregldwqeaat 25 (61)
T d2v9va1 5 KILAQIIQEHREGLDWQEAAT 25 (61)
T ss_dssp HHHHHHHHHCSSCEEHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHH
Confidence 47899885 467889886654
No 3
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=18.82 E-value=62 Score=19.77 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=26.3
Q ss_pred hccchHHHHHHHHHHHHHhcCCChHHHHHHHHhc
Q 031930 97 LTSSPWNNLMFMIYYGVVVEGRPWRDVKTKIKKD 130 (150)
Q Consensus 97 ~v~~P~~~~~f~~~~~~~l~g~~~~~~~~~~~~~ 130 (150)
++-+|+.-..+-.... ...|.+++++.+++++-
T Consensus 87 ii~~p~tegal~Aa~~-a~~g~~leeI~~~~~~~ 119 (123)
T d3ct6a1 87 IFNVPLIEGAYTASAL-LEAGATFEAIKEQLEKM 119 (123)
T ss_dssp ECCSCHHHHHHHHHHH-HHTTCCHHHHHHHHGGG
T ss_pred EEcCchHHHHHHHHHH-HhCCCCHHHHHHHHHHh
Confidence 3557777777777777 88999999999998764
No 4
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=17.02 E-value=74 Score=16.57 Aligned_cols=25 Identities=20% Similarity=0.162 Sum_probs=18.6
Q ss_pred chhhHHHHHHHHHhhhhhchhhhHH
Q 031930 47 KLQLRRLLLKVLFGCAYLGPFGHFL 71 (150)
Q Consensus 47 ~~D~~R~~~~~~~G~~~~gP~~h~w 71 (150)
-+|++|++.-.....+.-+-..|+-
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfi 31 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFI 31 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999877777766677777765
No 5
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=16.70 E-value=79 Score=16.78 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=34.2
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHhhhc---cchHHHHHHHHHHHHHhcCCChHHHHHH
Q 031930 71 LHLILDKIFKGKKDTSTVAKKVVLEQLT---SSPWNNLMFMIYYGVVVEGRPWRDVKTK 126 (150)
Q Consensus 71 wy~~L~~~~~~~~~~~~~~~Kv~~Dq~v---~~P~~~~~f~~~~~~~l~g~~~~~~~~~ 126 (150)
|-..++++..+ .+...-=.+-++|+.+ .++.-+..|+..+. ..|.+.+|+..-
T Consensus 2 ~~~il~kl~~g-~~Ls~ee~~~~~~~i~~g~~~d~qiaafL~al~--~kg~t~dEi~g~ 57 (69)
T d1khda1 2 HQPILEKLFKS-QSMTQEESHQLFAAIVRGELEDSQLAAALISMK--MRGERPEEIAGA 57 (69)
T ss_dssp CHHHHHHHHTT-CCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHH--HHCCCHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HhCCCHHHHHHH
Confidence 34567777766 3444444444555554 46778888888764 889988876554
No 6
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=16.57 E-value=16 Score=21.24 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhccchHHHH
Q 031930 87 TVAKKVVLEQLTSSPWNNL 105 (150)
Q Consensus 87 ~~~~Kv~~Dq~v~~P~~~~ 105 (150)
..++.+++||-+++-+-|.
T Consensus 27 ~~Ik~~LlDQ~~~aGIGN~ 45 (89)
T d1k3xa1 27 RQFAGLLLDQAFLAGLGNY 45 (89)
T ss_dssp SCHHHHTTCTTTSBTCCHH
T ss_pred chHHHHHhcCccccccCcH
Confidence 4588999999999999664
No 7
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.28 E-value=80 Score=18.96 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhCchhHHHHHHH-----HHHHHHHHHHHhHhc
Q 031930 5 AKKGLQQYLIQLQQHPLRTKAITAG-----VLSAISDIVAQKLTG 44 (150)
Q Consensus 5 ~~~~~~~Y~~~l~~~Pl~t~~~ts~-----~l~~~gD~~aQ~~~~ 44 (150)
++.+...|.+.+.+||-+...+.+. -....-|-+.+.+.+
T Consensus 7 Lr~~a~~~r~~l~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~ 51 (144)
T d2g7la2 7 LRAVLTSYTLVLFAHPQLARSALVARPSGENYLRLVERVLELLAR 51 (144)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHSCCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCcCHHHHHhcCCCCcccHHHHHHHHHHHHHH
Confidence 5678889999999999988876543 234556666666654
No 8
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=13.25 E-value=28 Score=20.13 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=16.0
Q ss_pred HHHHHHHHhhhccchHHHH
Q 031930 87 TVAKKVVLEQLTSSPWNNL 105 (150)
Q Consensus 87 ~~~~Kv~~Dq~v~~P~~~~ 105 (150)
..++.+++||-+++-+-|.
T Consensus 23 ~~ik~~LldQ~~iaGIGNi 41 (88)
T d1tdza1 23 KKIKPYLLEQTLVAGLGNI 41 (88)
T ss_dssp SBHHHHHHTSSSSSCCCHH
T ss_pred ccHHHHHHhccccCCcChH
Confidence 3589999999999998664
No 9
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=12.96 E-value=33 Score=19.79 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.5
Q ss_pred HHHHHHHhhhccchHHHH
Q 031930 88 VAKKVVLEQLTSSPWNNL 105 (150)
Q Consensus 88 ~~~Kv~~Dq~v~~P~~~~ 105 (150)
.++.+++||-+++-+-+.
T Consensus 24 ~ik~~LlDQ~~iaGiGN~ 41 (89)
T d1ee8a1 24 PLKALLLDQRLAAGVGNI 41 (89)
T ss_dssp BHHHHHHHSSSSTTCCHH
T ss_pred cHHHHHHhccccCCCCcH
Confidence 588999999999998654
No 10
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=12.46 E-value=31 Score=20.18 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhccchHHHH
Q 031930 87 TVAKKVVLEQLTSSPWNNL 105 (150)
Q Consensus 87 ~~~~Kv~~Dq~v~~P~~~~ 105 (150)
..++.+++||.+++-+-+.
T Consensus 23 ~~ik~~LlDQ~~~aGiGN~ 41 (94)
T d1r2za1 23 RSVKALLLDQTVVAGFGNI 41 (94)
T ss_dssp SBHHHHHHCTTTSSSCCHH
T ss_pred ccHHHHHHhccccCCcccH
Confidence 3589999999999998553
Done!