BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031931
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 35 MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEP 74
M C+ C +K L +V G S++ D++QQ ++V V P
Sbjct: 15 MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAP 54
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 37 CDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTGFVEP 74
C+ C +K L +V G S++ D++QQ +V V P
Sbjct: 16 CENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAP 53
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 35 MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
MDC C K++G L +KG V + ++TVT
Sbjct: 17 MDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT 51
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 35 MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
MDC C K++G L +KG V + ++TVT
Sbjct: 12 MDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT 46
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
QTV L V M C C +K LS V+G VDV ++++ VT
Sbjct: 3 QTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVT 46
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 28 TVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
T+ L V MDC CA + + + +V VDL +KVT+T
Sbjct: 1 TIQLTVPTMDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTIT 43
>pdb|1AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
pdb|2AW0|A Chain A, Fourth Metal-Binding Domain Of The Menkes Copper-
Transporting Atpase, Nmr, 20 Structures
Length = 72
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 35 MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTV 68
M C+ C + ++GV+S G KS+ V L TV
Sbjct: 12 MTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTV 45
>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 68
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 33 VRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTV 68
V M C GCA + VL+ + G K D+DL +KV +
Sbjct: 7 VDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCI 41
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
pdb|1TL5|A Chain A, Solution Structure Of Apohah1
pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Monomer)
pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
Length = 68
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 33 VRMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTV 68
V M C GCA + VL+ + G K D+DL +KV +
Sbjct: 8 VDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCI 42
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 27 QTVALKV-RMDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
QTV L V M C C +K +S V+G VDV + ++ VT
Sbjct: 3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVT 46
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 27 QTVALKVR-MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
QT+ L++ MDC CA ++ ++ V G +S V+ ++ V+
Sbjct: 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVS 45
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Zn(Ii)-Form
Length = 73
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 35 MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTV 68
MDC CARK++ + + G V V +K+ V
Sbjct: 12 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVV 45
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 35 MDCDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVTG 70
+ C CA K + + ++G V+ K+TVTG
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTG 47
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 37 CDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
C+ CA + + + +V VDL +KVT+T
Sbjct: 12 CEACAEAVTKAVQNEDAQATVQVDLTSKKVTIT 44
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 37 CDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
C+ CA + + + +V VDL +KVT+T
Sbjct: 11 CEACAEAVTKAVQNEDAQATVQVDLTSKKVTIT 43
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 37 CDGCARKMKGVLSSVKGAKSVDVDLKQQKVTVT 69
C+ CA + + + +V VDL +KVT+T
Sbjct: 12 CEACAEAVTKAVQNEDAQATVQVDLTSKKVTIT 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,543,384
Number of Sequences: 62578
Number of extensions: 101924
Number of successful extensions: 197
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 20
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)