BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031932
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FM67|TI205_ARATH Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana GN=TIC20-V
PE=2 SV=1
Length = 209
Score = 139 bits (350), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 75/92 (81%)
Query: 46 NHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAI 105
+ T+ +SK DS D DR+ISA+CYFYPFFDGIQYGK++ITQ+ P Q+LIQPL PAI
Sbjct: 42 DRAATLVLQSKGDDSVDASDRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAI 101
Query: 106 KVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPR 137
+ FKSFPFNGFL+F+TLYFVVVRN NFS+ R
Sbjct: 102 RAFKSFPFNGFLIFITLYFVVVRNPNFSRYVR 133
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 132 FSQVPRLPIVAEAADRQVL 150
F PRLP+VAEAADRQVL
Sbjct: 191 FGLTPRLPLVAEAADRQVL 209
>sp|O82251|TI202_ARATH Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana
GN=TIC20-II PE=2 SV=1
Length = 208
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 17/137 (12%)
Query: 2 TISNLLHSPQT-PLTLLHKPHNHHTRSSFLKSPSSSSFFTLTNKVNHHQTITTKSKKSDS 60
T++N L +P+ PL+L + S+F PSS LT + ++ T T
Sbjct: 11 TLTNPLSAPRCRPLSL-----SFPGSSTFSIRPSSRRATALTTRASYTPTPAT------- 58
Query: 61 ADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNGFLVFL 120
+R+IS Y PFF+ +QYG+++ Q+ + LL +P+ P + +++S P+ F+ F
Sbjct: 59 ----ERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVAFF 114
Query: 121 TLYFVVVRNTNFSQVPR 137
LY VVRNT+FS+ R
Sbjct: 115 GLYLGVVRNTSFSRYVR 131
>sp|P73387|YC60L_SYNY3 Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=sll1737 PE=3 SV=1
Length = 160
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 56 KKSDSADYPDRLISAICYFYPFFDGIQYGKYVITQFTPIQLLIQPLIPAIKVFKSFPFNG 115
+ +AD DR SA+ Y P D +G +++ QF +Q++ P++P ++ + FPF
Sbjct: 2 ASNSTADGKDRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFAS 61
Query: 116 FLVFLTLYFVVVRNTNFSQVPR 137
F++F+ L+ VVRN N S R
Sbjct: 62 FIIFIVLFMAVVRNNNISHFIR 83
>sp|P51360|YCF60_PORPU Tic20 family protein Ycf60 OS=Porphyra purpurea GN=ycf60 PE=3 SV=1
Length = 203
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 38 FFTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQ-YGKYVITQF--TPI 94
+ TL +N TT+SK S RL+S I Y+ P F+G+Q +G+YV+ + I
Sbjct: 28 YITLNTNIN-----TTESKTRLSI----RLVSIIPYYLPLFEGLQNFGQYVLPDYPVGAI 78
Query: 95 QLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRN 129
L + L+P + + + G + F LY+V+VRN
Sbjct: 79 PLYKKILLPMLIFYMNHAILGLVTFFALYYVLVRN 113
>sp|O19916|YCF60_CYACA Tic20 family protein Ycf60 OS=Cyanidium caldarium GN=ycf60 PE=3
SV=1
Length = 205
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 55 SKKSDSADYPD---RLISAICYFYPFFDGI-QYGKYVITQFTPIQLLIQPLIPAIKV-FK 109
S K DYP R IS + YF P +GI Q+G I + I+++ + + I V +
Sbjct: 39 SNKVYKEDYPSIMARAISCLIYFLPLLEGIAQFGIVCIDDHSWIRIIYKNTLAYIVVPYL 98
Query: 110 SFPFNGFLVFLTLYFVVVRN 129
P GF +F+TLY + VR
Sbjct: 99 ESPLIGFCIFITLYLIFVRG 118
>sp|Q1XDC7|YCF60_PORYE Tic20 family protein Ycf60 OS=Porphyra yezoensis GN=ycf60 PE=3 SV=1
Length = 203
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Query: 38 FFTLTNKVNHHQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQ-YGKYVITQF--TPI 94
+ L K+N+ T+SK S RL+S + Y+ P F+G+Q +G+YV+ + I
Sbjct: 28 YIKLNKKINN-----TESKTRLSI----RLVSTVPYYLPLFEGLQNFGQYVLPDYPVAAI 78
Query: 95 QLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRN 129
L + ++P + + + G + F LY+V+VRN
Sbjct: 79 PLYKKIILPMLIFYMNHAILGLVTFFALYYVLVRN 113
>sp|Q6B923|YCF60_GRATL Tic20 family protein Ycf60 OS=Gracilaria tenuistipitata var. liui
GN=ycf60 PE=3 SV=2
Length = 204
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 48 HQTITTKSKKSDSADYPDRLISAICYFYPFFDGIQ-YGKYVITQ--FTPIQLLIQPLIPA 104
H + K+ + DRL S + Y+ P +G+Q +G+ ++ F +Q+ + L+P
Sbjct: 31 HIAQSYKNHDVNDITIVDRLGSILPYWLPLLEGLQNFGQQILPDYPFNVMQIYKKTLMPL 90
Query: 105 IKVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPRLPIV 141
+ + + P ++F LY++ VRN S +P P +
Sbjct: 91 VIFYVTHPTLAVIIFFILYYLFVRNK--SPIPDRPFI 125
>sp|B3CRT6|GCP_ORITI Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Orientia tsutsugamushi (strain Ikeda) GN=gcp PE=3
SV=1
Length = 344
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 90 QFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPRLPI 140
Q+T +Q+L+ I AIK+F+S+ N F + YFV+ +Q R I
Sbjct: 240 QYTVVQILLCRSINAIKLFESYCSNNFKINRKNYFVISGGVAANQYLRQEI 290
>sp|A5CE49|GCP_ORITB Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Orientia tsutsugamushi (strain Boryong) GN=gcp PE=3
SV=1
Length = 344
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 90 QFTPIQLLIQPLIPAIKVFKSFPFNGFLVFLTLYFVVVRNTNFSQVPRLPI 140
Q+T +Q+L+ I AIK+F+S+ N F + YFV+ +Q R I
Sbjct: 240 QYTVVQILLCRSINAIKLFESYCSNNFKINRKNYFVISGGVAANQYLRQEI 290
>sp|Q9JH69|NS1AB_TASV1 Non-structural polyprotein 1AB OS=Turkey astrovirus 1 GN=ORF1 PE=3
SV=3
Length = 1611
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 23/83 (27%)
Query: 19 KPHNH------HTR----------------SSFLKSPSSSSFFTLTNKVNHHQTITTKSK 56
+PHNH HTR S LK P S+ F ++ H +TT SK
Sbjct: 1040 RPHNHKMCRDRHTRRFCFWCGVVHSDVEGHSRDLKCPKCSAGFANLREMEQH-AVTTCSK 1098
Query: 57 KSDSADYPDRLISAICYFYPFFD 79
K DS P R+ + + FD
Sbjct: 1099 KLDSHPEPSRVFQPLDFGLGIFD 1121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,427,205
Number of Sequences: 539616
Number of extensions: 1994859
Number of successful extensions: 6614
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6595
Number of HSP's gapped (non-prelim): 26
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)