Query 031932
Match_columns 150
No_of_seqs 102 out of 112
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 11:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v4y_B Nuclear inhibitor of pr 8.4 1E+02 0.0036 20.6 0.7 26 23-48 19-44 (62)
2 2lxl_A Vacuolar protein sortin 8.0 40 0.0014 26.2 -1.8 18 128-145 30-47 (183)
3 2pmr_A Uncharacterized protein 6.5 2.5E+02 0.0085 19.4 1.9 23 64-86 55-77 (87)
4 2rdd_B UPF0092 membrane protei 3.5 5.7E+02 0.019 14.5 1.7 11 120-130 14-24 (37)
5 1b9u_A Protein (ATP synthase); 3.0 8E+02 0.027 13.2 2.4 11 115-125 10-20 (34)
6 2l09_A ASR4154 protein; proto- 2.9 2.9E+02 0.0098 18.1 -0.0 11 130-140 14-24 (62)
7 2kru_A Light-independent proto 2.8 2.8E+02 0.0097 18.2 -0.2 10 130-139 15-24 (63)
8 1g92_A Poneratoxin, PAC-TX; ne 2.8 3.5E+02 0.012 14.9 0.2 9 140-148 16-24 (26)
9 2ysg_A Syntaxin-binding protei 2.7 5.2E+02 0.018 14.6 1.0 13 21-33 25-37 (40)
10 2kcp_A 30S ribosomal protein S 2.6 2.6E+02 0.0089 20.1 -0.5 16 126-141 43-58 (98)
No 1
>3v4y_B Nuclear inhibitor of protein phosphatase 1; PP1, Ser/Thr phosphatase, NIPP1, IDP, hydrolase; HET: GOL 15P; 2.10A {Homo sapiens}
Probab=8.35 E-value=1e+02 Score=20.59 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=8.3
Q ss_pred CCcccccccCCCCccccccccccccc
Q 031932 23 HHTRSSFLKSPSSSSFFTLTNKVNHH 48 (150)
Q Consensus 23 ~~~~s~~l~~p~~~s~~~~~~k~r~~ 48 (150)
||++.+.|.-.....-...+|+.||.
T Consensus 19 hNrRIs~l~i~~~~~~~~~~kRKRk~ 44 (62)
T 3v4y_B 19 HNKRISTLTIEEGNLDIQRPKRKRKN 44 (62)
T ss_dssp HHTCCCSCCCCC--------------
T ss_pred hcceeeeeeecCCccccccccccccc
Confidence 78888876554333333344544443
No 2
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=7.99 E-value=40 Score=26.20 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=14.1
Q ss_pred hCCCCCCcchhhHhHhhh
Q 031932 128 RNTNFSQVPRLPIVAEAA 145 (150)
Q Consensus 128 RN~~is~FIRFN~mQAi~ 145 (150)
+|+.|+|+.||+++|-++
T Consensus 30 ~~PvVaY~Cr~yA~e~~l 47 (183)
T 2lxl_A 30 RDPVVAYYCRLYAMQTGM 47 (183)
T ss_dssp HCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 577788888888888765
No 3
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=6.55 E-value=2.5e+02 Score=19.42 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=19.7
Q ss_pred hhHHHHHHHhhhhchhhhhhHHH
Q 031932 64 PDRLISAICYFYPFFDGIQYGKY 86 (150)
Q Consensus 64 ~dRilA~LpYlLPL~D~l~fG~~ 86 (150)
..+.++|+.|---|+|++..|.+
T Consensus 55 ~v~Ala~isYa~GwLDAlR~~~~ 77 (87)
T 2pmr_A 55 HITSFGCITYAHGLLDSLRMLHR 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 35899999999999999887754
No 4
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=3.45 E-value=5.7e+02 Score=14.49 Aligned_cols=11 Identities=36% Similarity=0.923 Sum_probs=6.2
Q ss_pred HHHHHHHHhCC
Q 031932 120 LTLYFVVVRNT 130 (150)
Q Consensus 120 f~Lyl~VVRN~ 130 (150)
.+.|+.+.|.+
T Consensus 14 ~ifYFl~iRPQ 24 (37)
T 2rdd_B 14 LIFYFMILRPQ 24 (37)
T ss_dssp HHHHHHTHHHH
T ss_pred HHHHHHHhhhH
Confidence 44566666643
No 5
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=2.95 E-value=8e+02 Score=13.16 Aligned_cols=11 Identities=9% Similarity=0.307 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 031932 115 GFLVFLTLYFV 125 (150)
Q Consensus 115 ~livFf~Lyl~ 125 (150)
..+.|.++++.
T Consensus 10 ~~i~Flil~~~ 20 (34)
T 1b9u_A 10 QAIAFVLFVLF 20 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44556555554
No 6
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=2.93 E-value=2.9e+02 Score=18.15 Aligned_cols=11 Identities=18% Similarity=0.145 Sum_probs=7.0
Q ss_pred CCCCCcchhhH
Q 031932 130 TNFSQVPRLPI 140 (150)
Q Consensus 130 ~~is~FIRFN~ 140 (150)
++||.|||=-+
T Consensus 14 kkIP~FVR~kv 24 (62)
T 2l09_A 14 KNIPFFARSQA 24 (62)
T ss_dssp HTSCGGGHHHH
T ss_pred HhCCHHHHHHH
Confidence 35788887443
No 7
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=2.78 E-value=2.8e+02 Score=18.24 Aligned_cols=10 Identities=10% Similarity=-0.067 Sum_probs=6.3
Q ss_pred CCCCCcchhh
Q 031932 130 TNFSQVPRLP 139 (150)
Q Consensus 130 ~~is~FIRFN 139 (150)
++||.|||=-
T Consensus 15 kkIP~FVR~k 24 (63)
T 2kru_A 15 GKVPFFVRKK 24 (63)
T ss_dssp TTSCHHHHHH
T ss_pred HhCCHHHHHH
Confidence 4577777743
No 8
>1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2
Probab=2.76 E-value=3.5e+02 Score=14.93 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=4.7
Q ss_pred HhHhhhhhc
Q 031932 140 IVAEAADRQ 148 (150)
Q Consensus 140 ~mQAi~~~~ 148 (150)
+.|||-|.|
T Consensus 16 viqaihdaq 24 (26)
T 1g92_A 16 VIQAIHDAQ 24 (26)
T ss_dssp TTTHHHHHH
T ss_pred HHHHHHHhh
Confidence 345555544
No 9
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=2.72 E-value=5.2e+02 Score=14.60 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=9.1
Q ss_pred CCCCcccccccCC
Q 031932 21 HNHHTRSSFLKSP 33 (150)
Q Consensus 21 ~~~~~~s~~l~~p 33 (150)
+||+++.+....|
T Consensus 25 ~nh~t~~ttW~~P 37 (40)
T 2ysg_A 25 INHVTQTTSWIHP 37 (40)
T ss_dssp EESSSCCEECCCC
T ss_pred EECCCCcCcCCCC
Confidence 4788887766665
No 10
>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A
Probab=2.65 E-value=2.6e+02 Score=20.05 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=9.7
Q ss_pred HHhCCCCCCcchhhHh
Q 031932 126 VVRNTNFSQVPRLPIV 141 (150)
Q Consensus 126 VVRN~~is~FIRFN~m 141 (150)
||.|+.=+.++|-|++
T Consensus 43 Vv~NpsN~~yvR~n~l 58 (98)
T 2kcp_A 43 VVENTANPHFVRRNII 58 (98)
T ss_dssp SSCSCSSCTTCCSSCC
T ss_pred EEECCCChHHeecccE
Confidence 5566666666666554
Done!