Query 031934
Match_columns 150
No_of_seqs 111 out of 1181
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.1E-30 2.5E-35 179.8 10.1 111 1-122 63-174 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 2.2E-30 4.9E-35 177.8 11.2 112 1-124 59-171 (200)
3 KOG0078 GTP-binding protein SE 100.0 8.2E-30 1.8E-34 177.6 9.7 113 1-125 66-179 (207)
4 cd04133 Rop_like Rop subfamily 100.0 3.2E-28 6.9E-33 169.9 13.2 123 1-123 54-176 (176)
5 cd01875 RhoG RhoG subfamily. 100.0 5.8E-28 1.3E-32 170.5 13.0 123 1-123 56-180 (191)
6 cd04121 Rab40 Rab40 subfamily. 100.0 5.4E-28 1.2E-32 170.4 11.4 111 1-123 60-170 (189)
7 KOG0080 GTPase Rab18, small G 100.0 2.7E-28 5.9E-33 163.3 8.1 114 1-126 65-180 (209)
8 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 5.6E-28 1.2E-32 166.3 9.8 112 1-124 76-189 (221)
9 KOG0087 GTPase Rab11/YPT3, sma 100.0 6.3E-28 1.4E-32 167.9 9.9 109 1-121 68-177 (222)
10 KOG0093 GTPase Rab3, small G p 99.9 7.2E-28 1.6E-32 159.1 7.5 110 1-122 75-185 (193)
11 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 4.1E-27 8.9E-32 170.4 12.1 122 1-122 66-190 (232)
12 KOG0098 GTPase Rab2, small G p 99.9 9.1E-28 2E-32 164.2 8.0 109 1-121 60-169 (216)
13 KOG0088 GTPase Rab21, small G 99.9 1.3E-27 2.8E-32 159.8 8.5 109 1-121 67-176 (218)
14 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.1E-26 2.3E-31 163.0 12.0 121 1-121 58-181 (182)
15 KOG0393 Ras-related small GTPa 99.9 5.8E-27 1.2E-31 163.7 10.4 124 1-124 58-183 (198)
16 cd04131 Rnd Rnd subfamily. Th 99.9 3.2E-26 7E-31 160.0 12.3 120 1-120 54-176 (178)
17 cd04132 Rho4_like Rho4-like su 99.9 3E-26 6.6E-31 160.7 12.0 133 1-139 54-187 (187)
18 cd04134 Rho3 Rho3 subfamily. 99.9 5.6E-26 1.2E-30 160.0 13.4 135 1-139 53-189 (189)
19 KOG0079 GTP-binding protein H- 99.9 5.1E-27 1.1E-31 155.3 7.3 110 1-122 62-171 (198)
20 cd04144 Ras2 Ras2 subfamily. 99.9 2.2E-26 4.7E-31 162.2 11.0 109 1-121 52-164 (190)
21 cd04120 Rab12 Rab12 subfamily. 99.9 3.2E-26 7E-31 162.9 11.4 110 1-122 54-165 (202)
22 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 4.8E-26 1E-30 164.0 12.2 122 1-122 54-178 (222)
23 KOG0394 Ras-related GTPase [Ge 99.9 3.4E-26 7.3E-31 156.2 10.7 114 1-123 63-181 (210)
24 KOG0091 GTPase Rab39, small G 99.9 9.1E-26 2E-30 151.6 9.5 109 1-121 63-174 (213)
25 KOG0083 GTPase Rab26/Rab37, sm 99.9 1.5E-26 3.2E-31 150.9 5.3 109 1-121 52-161 (192)
26 PTZ00099 rab6; Provisional 99.9 2.8E-25 6.1E-30 155.0 12.0 111 1-123 34-145 (176)
27 PTZ00369 Ras-like protein; Pro 99.9 8.1E-25 1.8E-29 154.1 12.5 110 1-122 58-169 (189)
28 cd04126 Rab20 Rab20 subfamily. 99.9 3.7E-25 8E-30 159.2 11.0 120 1-121 49-191 (220)
29 KOG0081 GTPase Rab27, small G 99.9 1.5E-25 3.3E-30 150.0 7.8 111 1-123 72-184 (219)
30 smart00176 RAN Ran (Ras-relate 99.9 7.1E-25 1.5E-29 155.8 11.3 108 1-122 49-156 (200)
31 cd01873 RhoBTB RhoBTB subfamil 99.9 1.1E-24 2.4E-29 154.3 12.2 115 1-118 71-194 (195)
32 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.1E-24 2.5E-29 151.7 12.0 119 1-119 54-174 (175)
33 smart00174 RHO Rho (Ras homolo 99.9 2.2E-24 4.8E-29 149.4 12.4 121 1-121 51-173 (174)
34 cd01871 Rac1_like Rac1-like su 99.9 2E-24 4.4E-29 150.3 11.7 118 1-118 54-173 (174)
35 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1.5E-24 3.3E-29 150.6 10.9 109 1-121 55-165 (172)
36 cd04110 Rab35 Rab35 subfamily. 99.9 2.8E-24 6E-29 152.6 12.0 109 1-121 60-168 (199)
37 cd04109 Rab28 Rab28 subfamily. 99.9 3E-24 6.5E-29 154.1 12.0 109 1-121 55-167 (215)
38 cd04122 Rab14 Rab14 subfamily. 99.9 3.7E-24 8E-29 147.5 11.4 109 1-121 56-165 (166)
39 cd04127 Rab27A Rab27a subfamil 99.9 2.7E-24 5.9E-29 149.8 10.8 109 1-121 68-178 (180)
40 KOG0086 GTPase Rab4, small G p 99.9 6E-25 1.3E-29 146.3 7.1 110 1-122 63-173 (214)
41 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 5.5E-24 1.2E-28 151.2 12.0 111 1-122 55-170 (201)
42 cd00877 Ran Ran (Ras-related n 99.9 9.7E-24 2.1E-28 145.8 11.8 109 1-123 54-162 (166)
43 PLN03071 GTP-binding nuclear p 99.9 8.1E-24 1.7E-28 152.4 11.7 108 1-122 67-174 (219)
44 cd04112 Rab26 Rab26 subfamily. 99.9 1.4E-23 3E-28 148.0 11.8 110 1-122 55-165 (191)
45 cd04136 Rap_like Rap-like subf 99.9 1.8E-23 4E-28 143.0 11.1 107 1-119 54-162 (163)
46 cd04128 Spg1 Spg1p. Spg1p (se 99.9 2.2E-23 4.9E-28 146.1 11.7 116 1-124 54-170 (182)
47 cd04125 RabA_like RabA-like su 99.9 2E-23 4.3E-28 146.7 11.1 110 1-122 54-164 (188)
48 cd04175 Rap1 Rap1 subgroup. T 99.9 2.6E-23 5.7E-28 142.8 11.2 107 1-119 54-162 (164)
49 cd04117 Rab15 Rab15 subfamily. 99.9 2.8E-23 6E-28 142.7 11.2 106 1-118 54-160 (161)
50 cd04124 RabL2 RabL2 subfamily. 99.9 4.8E-23 1E-27 141.5 11.6 107 1-122 54-160 (161)
51 cd01865 Rab3 Rab3 subfamily. 99.9 5E-23 1.1E-27 141.8 11.6 109 1-121 55-164 (165)
52 cd04176 Rap2 Rap2 subgroup. T 99.9 4.6E-23 1E-27 141.4 11.1 107 1-119 54-162 (163)
53 cd01867 Rab8_Rab10_Rab13_like 99.9 5.9E-23 1.3E-27 141.6 11.4 109 1-121 57-166 (167)
54 PF00071 Ras: Ras family; Int 99.9 3.8E-23 8.3E-28 141.5 10.4 108 1-120 53-161 (162)
55 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 5.8E-23 1.3E-27 141.3 11.1 108 1-120 56-164 (166)
56 cd04106 Rab23_lke Rab23-like s 99.9 5.4E-23 1.2E-27 140.7 10.8 106 1-118 56-161 (162)
57 cd04129 Rho2 Rho2 subfamily. 99.9 1.6E-22 3.6E-27 142.1 13.4 122 1-122 54-175 (187)
58 cd04118 Rab24 Rab24 subfamily. 99.9 1.8E-22 3.9E-27 142.2 12.8 114 1-122 55-168 (193)
59 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.7E-22 3.7E-27 140.2 12.1 117 1-117 53-171 (173)
60 cd04119 RJL RJL (RabJ-Like) su 99.9 1.5E-22 3.3E-27 138.8 10.9 108 1-120 54-167 (168)
61 cd04135 Tc10 TC10 subfamily. 99.9 3.6E-22 7.7E-27 138.3 12.5 119 1-119 53-173 (174)
62 cd04140 ARHI_like ARHI subfami 99.9 1.5E-22 3.3E-27 139.4 10.6 106 1-118 54-163 (165)
63 cd01864 Rab19 Rab19 subfamily. 99.9 1.8E-22 3.8E-27 138.9 10.8 107 1-118 57-164 (165)
64 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 2.3E-22 5E-27 139.4 11.5 112 1-122 54-167 (170)
65 smart00173 RAS Ras subfamily o 99.9 2.6E-22 5.7E-27 137.6 11.1 108 1-120 53-162 (164)
66 cd04101 RabL4 RabL4 (Rab-like4 99.9 2.5E-22 5.3E-27 137.8 10.9 107 1-119 57-163 (164)
67 cd01866 Rab2 Rab2 subfamily. 99.9 3.3E-22 7E-27 138.1 11.4 109 1-121 58-167 (168)
68 cd04111 Rab39 Rab39 subfamily. 99.9 2E-22 4.4E-27 144.3 10.6 110 1-122 57-168 (211)
69 cd04116 Rab9 Rab9 subfamily. 99.9 2.9E-22 6.2E-27 138.4 10.9 106 1-118 59-169 (170)
70 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.8E-22 6.2E-27 137.3 10.6 107 1-119 55-163 (164)
71 KOG0095 GTPase Rab30, small G 99.9 3.3E-23 7.1E-28 137.6 5.2 109 1-121 61-170 (213)
72 cd01868 Rab11_like Rab11-like. 99.9 4.6E-22 1E-26 136.6 11.0 107 1-119 57-164 (165)
73 cd04138 H_N_K_Ras_like H-Ras/N 99.9 5.1E-22 1.1E-26 135.4 11.0 106 1-119 54-161 (162)
74 cd04103 Centaurin_gamma Centau 99.9 4.7E-22 1E-26 136.5 10.6 104 1-118 52-157 (158)
75 PLN03110 Rab GTPase; Provision 99.9 4.8E-22 1E-26 142.8 10.6 109 1-121 66-175 (216)
76 cd04113 Rab4 Rab4 subfamily. 99.9 6.3E-22 1.4E-26 135.4 10.5 107 1-119 54-161 (161)
77 KOG0395 Ras-related GTPase [Ge 99.9 1.4E-21 2.9E-26 138.4 11.4 110 1-122 56-167 (196)
78 cd04142 RRP22 RRP22 subfamily. 99.9 2.3E-21 5.1E-26 137.6 12.6 113 1-125 54-179 (198)
79 KOG0097 GTPase Rab14, small G 99.9 3.4E-22 7.3E-27 131.8 7.5 109 1-121 65-174 (215)
80 cd04115 Rab33B_Rab33A Rab33B/R 99.9 1.3E-21 2.9E-26 135.3 10.9 107 1-119 56-168 (170)
81 cd04177 RSR1 RSR1 subgroup. R 99.9 2.4E-21 5.2E-26 133.7 11.7 109 1-120 54-164 (168)
82 cd01870 RhoA_like RhoA-like su 99.9 4.2E-21 9.1E-26 133.0 12.8 119 1-119 54-174 (175)
83 smart00175 RAB Rab subfamily o 99.9 2.3E-21 5E-26 132.6 11.2 109 1-121 54-163 (164)
84 cd04146 RERG_RasL11_like RERG/ 99.9 3.1E-21 6.8E-26 132.7 10.9 108 1-120 52-164 (165)
85 PLN03108 Rab family protein; P 99.9 3.4E-21 7.4E-26 137.8 11.0 109 1-121 60-169 (210)
86 PLN03118 Rab family protein; P 99.9 4.9E-21 1.1E-25 137.0 11.4 112 1-123 67-180 (211)
87 cd01860 Rab5_related Rab5-rela 99.9 5.5E-21 1.2E-25 130.8 11.1 107 1-119 55-162 (163)
88 cd04143 Rhes_like Rhes_like su 99.9 6E-21 1.3E-25 139.7 11.7 110 1-122 53-173 (247)
89 cd01861 Rab6 Rab6 subfamily. 99.9 5.7E-21 1.2E-25 130.5 10.6 106 1-118 54-160 (161)
90 cd01892 Miro2 Miro2 subfamily. 99.9 5E-21 1.1E-25 132.6 10.1 110 1-122 59-168 (169)
91 cd04123 Rab21 Rab21 subfamily. 99.8 1.5E-20 3.2E-25 128.2 11.3 107 1-119 54-161 (162)
92 cd01862 Rab7 Rab7 subfamily. 99.8 1.7E-20 3.6E-25 129.4 11.4 111 1-122 54-169 (172)
93 cd04148 RGK RGK subfamily. Th 99.8 7.8E-21 1.7E-25 137.0 10.1 107 1-121 55-164 (221)
94 cd01863 Rab18 Rab18 subfamily. 99.8 1.9E-20 4.1E-25 128.0 11.5 105 1-118 54-160 (161)
95 cd04149 Arf6 Arf6 subfamily. 99.8 5.9E-21 1.3E-25 132.2 8.3 103 1-117 58-167 (168)
96 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.7E-21 3.7E-26 134.3 5.3 108 1-117 49-163 (164)
97 cd04137 RheB Rheb (Ras Homolog 99.8 2.3E-20 4.9E-25 130.0 10.9 125 1-139 54-180 (180)
98 PLN00223 ADP-ribosylation fact 99.8 1.2E-20 2.5E-25 132.2 9.2 105 1-121 66-179 (181)
99 cd01893 Miro1 Miro1 subfamily. 99.8 3.6E-20 7.7E-25 127.7 11.4 113 1-121 52-165 (166)
100 cd00157 Rho Rho (Ras homology) 99.8 4.4E-20 9.4E-25 127.2 11.4 117 1-117 53-170 (171)
101 cd04139 RalA_RalB RalA/RalB su 99.8 5E-20 1.1E-24 125.9 11.5 108 1-120 53-162 (164)
102 cd04158 ARD1 ARD1 subfamily. 99.8 2.7E-20 5.9E-25 128.7 10.1 110 1-123 48-164 (169)
103 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2.5E-20 5.4E-25 130.6 9.3 110 1-123 57-173 (183)
104 cd04147 Ras_dva Ras-dva subfam 99.8 8E-20 1.7E-24 129.5 11.3 112 1-123 52-166 (198)
105 cd04150 Arf1_5_like Arf1-Arf5- 99.8 3E-20 6.5E-25 127.5 8.1 103 1-117 49-158 (159)
106 smart00177 ARF ARF-like small 99.8 6.8E-20 1.5E-24 127.6 9.6 106 1-120 62-174 (175)
107 cd04114 Rab30 Rab30 subfamily. 99.8 1.5E-19 3.3E-24 124.4 11.1 107 1-119 61-168 (169)
108 KOG4252 GTP-binding protein [S 99.8 8.6E-21 1.9E-25 129.5 4.5 110 1-122 74-183 (246)
109 PTZ00133 ADP-ribosylation fact 99.8 1.2E-19 2.6E-24 127.2 8.9 108 1-122 66-180 (182)
110 cd04154 Arl2 Arl2 subfamily. 99.8 1.3E-19 2.9E-24 125.6 8.8 103 1-117 63-172 (173)
111 cd00876 Ras Ras family. The R 99.8 4.2E-19 9E-24 120.7 10.0 107 1-119 52-160 (160)
112 cd04157 Arl6 Arl6 subfamily. 99.8 2E-19 4.2E-24 122.9 8.2 103 1-117 50-161 (162)
113 PTZ00132 GTP-binding nuclear p 99.8 9.6E-19 2.1E-23 125.4 11.5 110 1-124 63-172 (215)
114 cd00154 Rab Rab family. Rab G 99.8 6.6E-19 1.4E-23 119.1 9.9 104 1-116 54-158 (159)
115 cd01890 LepA LepA subfamily. 99.8 4.8E-19 1E-23 123.1 8.7 104 1-120 72-177 (179)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 8.2E-19 1.8E-23 121.9 8.1 103 1-117 64-173 (174)
117 cd04151 Arl1 Arl1 subfamily. 99.8 3.6E-19 7.9E-24 121.6 5.6 104 1-117 48-157 (158)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.5E-18 3.3E-23 118.5 8.3 103 1-117 49-159 (160)
119 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.5E-18 5.5E-23 118.1 8.7 104 1-117 55-166 (167)
120 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3.1E-18 6.6E-23 116.8 8.5 103 1-117 48-157 (158)
121 cd04102 RabL3 RabL3 (Rab-like3 99.8 1.9E-18 4E-23 123.0 7.4 98 1-106 59-176 (202)
122 cd00879 Sar1 Sar1 subfamily. 99.8 5.2E-18 1.1E-22 119.1 8.7 106 1-119 68-190 (190)
123 cd04161 Arl2l1_Arl13_like Arl2 99.7 5.8E-18 1.3E-22 116.9 8.3 110 1-117 48-166 (167)
124 KOG3883 Ras family small GTPas 99.7 2.7E-17 5.8E-22 109.8 9.8 114 1-126 65-181 (198)
125 smart00178 SAR Sar1p-like memb 99.7 3.6E-17 7.8E-22 114.7 8.6 105 1-118 66-183 (184)
126 TIGR02528 EutP ethanolamine ut 99.7 1.7E-17 3.7E-22 111.3 6.5 97 1-116 40-141 (142)
127 KOG4423 GTP-binding protein-li 99.7 3.5E-17 7.7E-22 112.4 7.0 112 1-122 80-196 (229)
128 PLN00023 GTP-binding protein; 99.7 5.9E-17 1.3E-21 121.6 8.0 91 1-96 88-191 (334)
129 cd01897 NOG NOG1 is a nucleola 99.7 1.9E-16 4.2E-21 108.8 9.1 106 1-120 52-168 (168)
130 PF00025 Arf: ADP-ribosylation 99.7 3.6E-16 7.7E-21 109.0 10.5 105 1-119 63-175 (175)
131 cd01898 Obg Obg subfamily. Th 99.7 2.5E-16 5.3E-21 108.4 9.0 105 1-118 53-169 (170)
132 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 4.5E-17 9.7E-22 112.1 4.3 109 1-123 64-172 (216)
133 cd04171 SelB SelB subfamily. 99.7 2.2E-16 4.7E-21 107.8 7.7 102 1-117 56-163 (164)
134 cd04159 Arl10_like Arl10-like 99.7 3.6E-16 7.7E-21 105.7 8.3 103 1-117 49-158 (159)
135 COG1100 GTPase SAR1 and relate 99.7 1.1E-15 2.4E-20 109.4 9.8 122 1-123 59-188 (219)
136 cd04155 Arl3 Arl3 subfamily. 99.6 8.1E-16 1.8E-20 106.2 8.3 101 1-117 63-172 (173)
137 KOG1673 Ras GTPases [General f 99.6 1.6E-15 3.4E-20 101.6 9.1 116 1-123 74-189 (205)
138 KOG0070 GTP-binding ADP-ribosy 99.6 1.4E-15 3.1E-20 104.4 8.5 108 1-121 66-179 (181)
139 TIGR01393 lepA GTP-binding pro 99.6 1.4E-15 3.1E-20 123.2 8.9 107 1-123 75-183 (595)
140 PRK12299 obgE GTPase CgtA; Rev 99.6 2.1E-15 4.5E-20 114.7 8.9 109 1-121 211-329 (335)
141 PRK15467 ethanolamine utilizat 99.6 2E-15 4.4E-20 103.5 7.8 101 1-121 42-148 (158)
142 cd01879 FeoB Ferrous iron tran 99.6 4.8E-15 1E-19 100.6 9.3 101 1-119 48-156 (158)
143 cd01891 TypA_BipA TypA (tyrosi 99.6 2.7E-15 5.8E-20 106.0 7.6 94 1-108 70-170 (194)
144 cd01888 eIF2_gamma eIF2-gamma 99.6 4.1E-15 8.9E-20 105.9 7.7 108 1-123 88-202 (203)
145 KOG0073 GTP-binding ADP-ribosy 99.6 5.4E-15 1.2E-19 99.7 7.8 113 1-121 65-179 (185)
146 TIGR00157 ribosome small subun 99.6 1.2E-14 2.7E-19 106.2 10.1 97 6-117 23-120 (245)
147 cd01878 HflX HflX subfamily. 99.6 1.1E-14 2.5E-19 103.4 8.3 101 1-119 94-204 (204)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 2.3E-14 5.1E-19 98.2 9.1 107 1-120 55-166 (168)
149 cd00882 Ras_like_GTPase Ras-li 99.6 3.4E-14 7.4E-19 94.4 9.5 104 1-116 50-156 (157)
150 PRK05433 GTP-binding protein L 99.6 1.8E-14 3.9E-19 117.0 8.8 107 1-123 79-187 (600)
151 cd00881 GTP_translation_factor 99.5 3.3E-14 7.1E-19 99.1 8.8 108 1-120 67-187 (189)
152 TIGR02729 Obg_CgtA Obg family 99.5 2.5E-14 5.5E-19 108.6 8.7 106 1-119 210-328 (329)
153 PRK03003 GTP-binding protein D 99.5 2.3E-14 5E-19 113.7 8.5 102 1-121 91-200 (472)
154 PRK03003 GTP-binding protein D 99.5 1.8E-14 3.9E-19 114.3 7.7 108 1-120 264-382 (472)
155 TIGR00231 small_GTP small GTP- 99.5 4E-14 8.7E-19 95.1 8.0 103 1-115 55-159 (161)
156 cd01894 EngA1 EngA1 subfamily. 99.5 4.9E-14 1.1E-18 95.3 8.1 100 1-119 50-157 (157)
157 KOG0075 GTP-binding ADP-ribosy 99.5 1.2E-14 2.5E-19 96.6 4.8 104 1-119 70-181 (186)
158 cd01881 Obg_like The Obg-like 99.5 4E-14 8.8E-19 97.7 7.7 106 1-118 49-175 (176)
159 TIGR00436 era GTP-binding prot 99.5 5.6E-14 1.2E-18 104.2 8.5 107 1-123 53-167 (270)
160 KOG0071 GTP-binding ADP-ribosy 99.5 2.5E-14 5.5E-19 94.4 5.7 107 1-120 66-178 (180)
161 PRK04213 GTP-binding protein; 99.5 1.4E-14 3E-19 102.7 4.6 105 1-121 57-193 (201)
162 TIGR00487 IF-2 translation ini 99.5 1.2E-13 2.5E-18 111.9 9.7 101 1-118 140-248 (587)
163 PRK15494 era GTPase Era; Provi 99.5 1.1E-13 2.5E-18 105.6 9.2 105 1-122 105-218 (339)
164 TIGR03594 GTPase_EngA ribosome 99.5 1.7E-13 3.6E-18 107.5 9.9 109 1-120 225-344 (429)
165 cd01889 SelB_euk SelB subfamil 99.5 1.6E-13 3.5E-18 96.7 7.8 109 1-122 73-188 (192)
166 PF00009 GTP_EFTU: Elongation 99.5 2.3E-13 4.9E-18 95.7 8.4 107 1-120 75-187 (188)
167 TIGR03156 GTP_HflX GTP-binding 99.5 1.8E-13 4E-18 104.8 8.4 99 1-118 242-350 (351)
168 PRK12297 obgE GTPase CgtA; Rev 99.5 4.5E-13 9.7E-18 104.6 10.4 106 1-122 211-329 (424)
169 CHL00189 infB translation init 99.5 2.3E-13 5E-18 112.1 8.3 103 1-119 300-409 (742)
170 PRK05306 infB translation init 99.4 4.8E-13 1E-17 111.0 9.2 102 1-118 342-450 (787)
171 TIGR00475 selB selenocysteine- 99.4 4.8E-13 1E-17 108.5 9.0 107 1-122 55-168 (581)
172 TIGR00491 aIF-2 translation in 99.4 4.2E-13 9.1E-18 108.6 8.6 110 1-119 74-215 (590)
173 COG2229 Predicted GTPase [Gene 99.4 8.6E-13 1.9E-17 90.8 8.8 102 1-118 73-176 (187)
174 PRK05291 trmE tRNA modificatio 99.4 2.2E-13 4.8E-18 107.5 6.7 96 1-121 268-371 (449)
175 KOG0076 GTP-binding ADP-ribosy 99.4 1.2E-13 2.6E-18 94.1 3.9 109 1-122 74-189 (197)
176 TIGR00450 mnmE_trmE_thdF tRNA 99.4 6.5E-13 1.4E-17 104.5 8.4 98 1-121 256-361 (442)
177 PF08477 Miro: Miro-like prote 99.4 2.2E-13 4.8E-18 88.6 4.3 63 1-63 55-119 (119)
178 TIGR00437 feoB ferrous iron tr 99.4 8.5E-13 1.9E-17 107.1 8.6 101 1-119 46-154 (591)
179 cd01895 EngA2 EngA2 subfamily. 99.4 2.8E-12 6.2E-17 87.8 9.6 104 1-118 55-173 (174)
180 PRK11058 GTPase HflX; Provisio 99.4 2.5E-12 5.4E-17 100.8 9.9 105 1-121 250-363 (426)
181 cd04164 trmE TrmE (MnmE, ThdF, 99.4 1.4E-12 3E-17 88.1 7.4 95 1-119 54-156 (157)
182 PRK00093 GTP-binding protein D 99.4 2.7E-12 5.9E-17 100.9 9.2 100 1-119 54-161 (435)
183 TIGR00483 EF-1_alpha translati 99.4 9.1E-13 2E-17 103.5 6.5 105 1-112 90-199 (426)
184 cd00880 Era_like Era (E. coli 99.4 3.7E-12 8.1E-17 85.5 8.3 105 1-119 50-163 (163)
185 TIGR03594 GTPase_EngA ribosome 99.4 2.4E-12 5.3E-17 101.0 8.4 103 1-122 52-162 (429)
186 TIGR03680 eif2g_arch translati 99.4 2.2E-12 4.9E-17 100.7 7.9 107 1-122 85-198 (406)
187 PRK00089 era GTPase Era; Revie 99.4 4.1E-12 8.9E-17 95.1 8.7 108 1-122 58-173 (292)
188 PRK09518 bifunctional cytidyla 99.3 2.5E-12 5.5E-17 106.6 7.5 109 1-121 503-622 (712)
189 cd04163 Era Era subfamily. Er 99.3 4.9E-12 1.1E-16 85.8 7.7 104 1-118 56-167 (168)
190 PRK10512 selenocysteinyl-tRNA- 99.3 3.9E-12 8.4E-17 103.7 8.0 105 1-120 56-166 (614)
191 PRK04000 translation initiatio 99.3 6E-12 1.3E-16 98.4 8.7 108 1-122 90-203 (411)
192 PRK09518 bifunctional cytidyla 99.3 4.2E-12 9.1E-17 105.3 8.1 102 1-121 328-437 (712)
193 TIGR01394 TypA_BipA GTP-bindin 99.3 4E-12 8.7E-17 103.2 7.2 109 1-123 69-194 (594)
194 PRK00093 GTP-binding protein D 99.3 3.7E-12 8E-17 100.2 6.8 107 1-119 226-343 (435)
195 PRK12298 obgE GTPase CgtA; Rev 99.3 1.2E-11 2.5E-16 96.1 8.9 110 1-122 212-335 (390)
196 PRK12317 elongation factor 1-a 99.3 4.4E-12 9.6E-17 99.6 6.6 103 1-112 89-197 (425)
197 PRK04004 translation initiatio 99.3 1.1E-11 2.3E-16 100.6 8.7 111 1-118 76-216 (586)
198 KOG0072 GTP-binding ADP-ribosy 99.3 9.5E-12 2.1E-16 82.6 6.5 113 1-121 67-180 (182)
199 PRK00454 engB GTP-binding prot 99.3 1.5E-11 3.2E-16 86.6 7.8 107 1-120 75-194 (196)
200 PRK12296 obgE GTPase CgtA; Rev 99.3 2.2E-11 4.7E-16 96.7 9.3 108 1-121 211-341 (500)
201 cd04166 CysN_ATPS CysN_ATPS su 99.3 8.1E-12 1.8E-16 89.3 6.2 102 1-111 82-185 (208)
202 PRK10218 GTP-binding protein; 99.3 1.8E-11 3.9E-16 99.5 8.1 109 1-123 73-198 (607)
203 cd04165 GTPBP1_like GTPBP1-lik 99.3 3.6E-11 7.8E-16 86.9 8.8 103 2-116 90-219 (224)
204 cd04167 Snu114p Snu114p subfam 99.3 1.3E-11 2.8E-16 88.5 6.3 115 1-119 76-210 (213)
205 PRK14845 translation initiatio 99.2 3.1E-11 6.6E-16 102.6 9.0 111 1-118 531-671 (1049)
206 KOG0462 Elongation factor-type 99.2 6.5E-11 1.4E-15 93.3 9.8 108 2-125 131-240 (650)
207 cd04168 TetM_like Tet(M)-like 99.2 4.3E-11 9.3E-16 87.2 8.2 117 1-121 69-236 (237)
208 COG0532 InfB Translation initi 99.2 1E-10 2.2E-15 92.1 10.3 99 1-119 60-169 (509)
209 cd01885 EF2 EF2 (for archaea a 99.2 5E-11 1.1E-15 86.0 8.0 61 1-65 78-138 (222)
210 TIGR03598 GTPase_YsxC ribosome 99.2 1.7E-11 3.8E-16 85.4 5.1 97 1-109 69-179 (179)
211 PRK00098 GTPase RsgA; Reviewed 99.2 7.8E-11 1.7E-15 88.6 8.8 87 17-117 78-164 (298)
212 COG0481 LepA Membrane GTPase L 99.2 1.1E-10 2.4E-15 90.8 9.6 110 1-126 81-192 (603)
213 cd01883 EF1_alpha Eukaryotic e 99.2 1.8E-11 4E-16 88.1 4.7 100 1-109 82-194 (219)
214 KOG0074 GTP-binding ADP-ribosy 99.2 1.2E-11 2.7E-16 81.9 3.1 105 1-118 67-177 (185)
215 PRK12736 elongation factor Tu; 99.2 8.3E-11 1.8E-15 91.6 7.5 110 1-121 80-202 (394)
216 cd01884 EF_Tu EF-Tu subfamily. 99.2 1.4E-10 3E-15 82.2 7.7 96 2-108 71-171 (195)
217 cd01855 YqeH YqeH. YqeH is an 99.2 1.6E-10 3.4E-15 81.4 7.9 95 9-120 24-125 (190)
218 PF10662 PduV-EutP: Ethanolami 99.2 5.5E-11 1.2E-15 79.7 5.3 97 2-116 42-142 (143)
219 cd01859 MJ1464 MJ1464. This f 99.2 1E-10 2.2E-15 79.9 6.6 95 9-120 2-96 (156)
220 cd04105 SR_beta Signal recogni 99.2 8.1E-11 1.8E-15 83.9 6.0 66 1-67 53-124 (203)
221 COG1160 Predicted GTPases [Gen 99.1 2.7E-10 5.9E-15 88.3 8.9 100 2-120 57-165 (444)
222 PRK12289 GTPase RsgA; Reviewed 99.1 4.6E-10 9.9E-15 86.0 9.7 95 9-119 79-174 (352)
223 COG1160 Predicted GTPases [Gen 99.1 2.8E-10 6.1E-15 88.3 8.5 108 2-119 232-350 (444)
224 PRK09554 feoB ferrous iron tra 99.1 5.3E-10 1.2E-14 93.2 9.9 101 1-119 55-167 (772)
225 COG1159 Era GTPase [General fu 99.1 4.4E-10 9.5E-15 83.0 8.3 108 2-123 60-175 (298)
226 TIGR00485 EF-Tu translation el 99.1 1.9E-10 4E-15 89.7 6.7 95 1-106 80-179 (394)
227 cd01854 YjeQ_engC YjeQ/EngC. 99.1 7.4E-10 1.6E-14 82.9 9.2 86 16-117 75-161 (287)
228 PRK12735 elongation factor Tu; 99.1 3.7E-10 8.1E-15 88.0 7.5 109 1-120 80-203 (396)
229 TIGR03597 GTPase_YqeH ribosome 99.1 4.5E-10 9.8E-15 86.5 7.6 96 6-118 50-151 (360)
230 PRK00741 prfC peptide chain re 99.1 9.7E-10 2.1E-14 88.3 8.9 62 1-66 84-145 (526)
231 PRK09866 hypothetical protein; 99.0 1.6E-09 3.5E-14 87.7 9.7 107 2-120 236-353 (741)
232 KOG1707 Predicted Ras related/ 99.0 1.9E-10 4.1E-15 91.2 4.1 99 14-122 74-177 (625)
233 PF02421 FeoB_N: Ferrous iron 99.0 5.7E-10 1.2E-14 76.2 5.9 97 1-115 52-156 (156)
234 cd01896 DRG The developmentall 99.0 1.7E-09 3.7E-14 78.7 8.6 49 53-119 177-225 (233)
235 PRK13351 elongation factor G; 99.0 1.2E-09 2.6E-14 90.5 8.8 63 1-67 78-140 (687)
236 cd01876 YihA_EngB The YihA (En 99.0 1.8E-09 3.9E-14 73.3 8.2 106 1-119 50-170 (170)
237 PTZ00327 eukaryotic translatio 99.0 1.5E-09 3.2E-14 85.9 8.7 111 1-122 122-235 (460)
238 PRK12288 GTPase RsgA; Reviewed 99.0 3E-09 6.4E-14 81.5 9.9 89 18-119 119-207 (347)
239 PRK13768 GTPase; Provisional 99.0 1.5E-09 3.3E-14 79.8 7.4 119 1-120 102-247 (253)
240 TIGR02034 CysN sulfate adenyly 99.0 1.2E-09 2.5E-14 85.5 6.2 101 1-110 85-187 (406)
241 cd01858 NGP_1 NGP-1. Autoanti 98.9 4.6E-09 9.9E-14 71.8 7.7 90 16-119 5-94 (157)
242 PRK12740 elongation factor G; 98.9 5E-09 1.1E-13 86.7 8.4 62 1-66 65-126 (668)
243 PLN00043 elongation factor 1-a 98.9 2.4E-09 5.2E-14 84.6 6.0 102 1-110 90-203 (447)
244 KOG1145 Mitochondrial translat 98.9 1.9E-08 4E-13 79.8 10.3 100 1-119 206-315 (683)
245 PRK05124 cysN sulfate adenylyl 98.9 1.8E-09 3.9E-14 85.9 4.7 102 1-111 112-216 (474)
246 CHL00071 tufA elongation facto 98.9 5.2E-09 1.1E-13 82.0 7.2 95 2-107 81-180 (409)
247 cd04169 RF3 RF3 subfamily. Pe 98.9 4.2E-09 9.1E-14 78.1 6.1 63 1-67 76-138 (267)
248 PRK00049 elongation factor Tu; 98.9 9.1E-09 2E-13 80.3 8.0 108 2-120 81-203 (396)
249 TIGR00503 prfC peptide chain r 98.8 1.7E-08 3.6E-13 81.3 8.9 62 1-66 85-146 (527)
250 TIGR03596 GTPase_YlqF ribosome 98.8 1.5E-08 3.3E-13 75.5 7.3 90 13-121 15-104 (276)
251 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.4E-08 2.9E-13 68.3 6.4 76 16-107 8-84 (141)
252 cd01886 EF-G Elongation factor 98.8 5.9E-09 1.3E-13 77.4 5.1 62 1-66 69-130 (270)
253 PLN03126 Elongation factor Tu; 98.8 1.6E-08 3.5E-13 80.5 7.1 96 1-107 149-249 (478)
254 cd00066 G-alpha G protein alph 98.8 5.4E-08 1.2E-12 73.8 9.6 122 1-122 166-313 (317)
255 PLN03127 Elongation factor Tu; 98.8 2.7E-08 5.8E-13 78.7 8.0 110 2-122 130-254 (447)
256 cd01849 YlqF_related_GTPase Yl 98.8 5.7E-08 1.2E-12 66.3 8.5 83 21-120 1-85 (155)
257 PRK05506 bifunctional sulfate 98.8 8.3E-09 1.8E-13 84.9 4.9 101 1-110 109-211 (632)
258 cd01856 YlqF YlqF. Proteins o 98.8 4.3E-08 9.3E-13 68.0 7.5 90 12-120 12-101 (171)
259 TIGR00484 EF-G translation elo 98.7 2.7E-08 5.8E-13 82.6 6.6 63 1-67 80-142 (689)
260 cd01899 Ygr210 Ygr210 subfamil 98.7 8.3E-08 1.8E-12 72.8 8.6 58 52-123 214-272 (318)
261 COG0486 ThdF Predicted GTPase 98.7 5.3E-08 1.2E-12 76.0 7.3 100 2-122 271-378 (454)
262 PRK12739 elongation factor G; 98.7 9.1E-08 2E-12 79.5 8.7 62 1-66 78-139 (691)
263 PTZ00141 elongation factor 1- 98.7 5.5E-08 1.2E-12 77.0 6.6 101 1-110 90-203 (446)
264 smart00275 G_alpha G protein a 98.6 1.5E-07 3.1E-12 72.2 7.9 120 1-122 189-336 (342)
265 cd04104 p47_IIGP_like p47 (47- 98.6 2.5E-07 5.5E-12 65.5 8.6 115 1-121 57-185 (197)
266 COG2262 HflX GTPases [General 98.6 5.7E-07 1.2E-11 69.3 10.1 88 17-121 269-357 (411)
267 PRK09563 rbgA GTPase YlqF; Rev 98.6 3.1E-07 6.7E-12 68.8 8.2 89 14-121 19-107 (287)
268 COG4917 EutP Ethanolamine util 98.6 1.2E-07 2.7E-12 61.8 5.1 83 16-117 61-143 (148)
269 KOG1144 Translation initiation 98.6 2.3E-07 4.9E-12 76.0 7.3 131 2-140 546-706 (1064)
270 cd04170 EF-G_bact Elongation f 98.6 2E-07 4.3E-12 69.1 6.5 63 1-67 69-131 (268)
271 PRK13796 GTPase YqeH; Provisio 98.6 3.3E-07 7.1E-12 70.9 7.8 84 18-118 67-157 (365)
272 PF04670 Gtr1_RagA: Gtr1/RagA 98.6 3.1E-07 6.7E-12 66.7 7.2 116 1-122 53-178 (232)
273 KOG1489 Predicted GTP-binding 98.5 6.5E-07 1.4E-11 67.0 8.8 87 17-117 272-364 (366)
274 COG2895 CysN GTPases - Sulfate 98.5 3.8E-07 8.3E-12 69.2 6.6 100 2-110 92-193 (431)
275 PF03029 ATP_bind_1: Conserved 98.5 1.2E-07 2.7E-12 69.1 3.6 119 1-119 96-236 (238)
276 COG5257 GCD11 Translation init 98.4 7.6E-07 1.6E-11 66.9 6.8 107 2-123 92-205 (415)
277 KOG1423 Ras-like GTPase ERA [C 98.4 5.8E-07 1.3E-11 67.1 6.1 105 15-122 151-273 (379)
278 COG0218 Predicted GTPase [Gene 98.4 2.9E-06 6.3E-11 59.8 8.8 101 6-121 90-198 (200)
279 COG1217 TypA Predicted membran 98.4 2.6E-06 5.6E-11 66.8 9.0 108 2-123 74-198 (603)
280 COG0536 Obg Predicted GTPase [ 98.3 4E-06 8.7E-11 63.4 8.5 96 17-123 235-336 (369)
281 PRK01889 GTPase RsgA; Reviewed 98.3 4.8E-06 1E-10 64.3 8.6 84 17-116 110-193 (356)
282 COG3276 SelB Selenocysteine-sp 98.3 4.7E-06 1E-10 64.9 7.9 102 2-120 56-162 (447)
283 PF09439 SRPRB: Signal recogni 98.3 1.5E-06 3.2E-11 60.8 4.7 67 2-68 55-128 (181)
284 TIGR00101 ureG urease accessor 98.3 5.1E-06 1.1E-10 59.1 7.3 81 20-120 113-196 (199)
285 PRK00007 elongation factor G; 98.2 3.4E-06 7.3E-11 70.3 7.0 88 2-105 81-171 (693)
286 TIGR00490 aEF-2 translation el 98.2 1.1E-06 2.3E-11 73.6 3.4 62 1-66 91-152 (720)
287 PRK07560 elongation factor EF- 98.1 7.7E-06 1.7E-10 68.6 7.4 62 1-66 92-153 (731)
288 PRK09435 membrane ATPase/prote 98.1 1.2E-05 2.5E-10 61.5 7.7 100 2-120 155-260 (332)
289 KOG1707 Predicted Ras related/ 98.1 1.1E-05 2.4E-10 64.7 7.6 96 18-126 494-589 (625)
290 COG5256 TEF1 Translation elong 98.1 7.6E-06 1.7E-10 63.3 5.8 100 1-112 90-203 (428)
291 KOG0077 Vesicle coat complex C 98.1 5.2E-06 1.1E-10 56.8 4.3 66 1-67 69-136 (193)
292 COG1162 Predicted GTPases [Gen 98.1 4.9E-05 1.1E-09 57.0 9.6 100 7-119 67-166 (301)
293 COG4108 PrfC Peptide chain rel 98.1 2.9E-05 6.4E-10 60.6 8.5 61 1-65 86-146 (528)
294 COG1084 Predicted GTPase [Gene 98.0 2.4E-05 5.3E-10 59.0 7.1 89 20-122 248-338 (346)
295 smart00010 small_GTPase Small 98.0 3.5E-06 7.5E-11 54.6 2.3 77 11-109 38-115 (124)
296 TIGR00073 hypB hydrogenase acc 98.0 5.5E-05 1.2E-09 54.0 8.5 82 19-118 123-205 (207)
297 cd01850 CDC_Septin CDC/Septin. 98.0 9.7E-06 2.1E-10 60.5 4.7 79 12-104 105-186 (276)
298 PRK09602 translation-associate 98.0 3.3E-05 7.1E-10 60.5 7.6 56 52-122 217-273 (396)
299 PF06858 NOG1: Nucleolar GTP-b 98.0 4E-05 8.6E-10 43.3 5.6 43 20-63 14-58 (58)
300 COG0050 TufB GTPases - transla 97.9 2.4E-05 5.2E-10 58.4 5.6 108 2-123 81-204 (394)
301 COG0370 FeoB Fe2+ transport sy 97.9 5.2E-05 1.1E-09 62.0 7.5 87 19-123 81-167 (653)
302 COG3596 Predicted GTPase [Gene 97.9 2.8E-05 6E-10 57.4 5.4 117 1-121 92-223 (296)
303 KOG3886 GTP-binding protein [S 97.9 0.00013 2.8E-09 52.8 8.1 113 1-123 58-181 (295)
304 PLN00116 translation elongatio 97.9 1.5E-05 3.3E-10 67.8 4.0 61 1-65 103-163 (843)
305 PTZ00416 elongation factor 2; 97.8 2.3E-05 5E-10 66.7 3.6 61 1-65 97-157 (836)
306 KOG0090 Signal recognition par 97.7 0.00014 3E-09 51.9 6.3 67 2-68 88-161 (238)
307 TIGR00750 lao LAO/AO transport 97.6 0.00034 7.4E-09 52.8 8.0 89 16-120 144-238 (300)
308 cd01882 BMS1 Bms1. Bms1 is an 97.6 0.00021 4.6E-09 51.7 6.6 92 2-107 89-183 (225)
309 cd04178 Nucleostemin_like Nucl 97.6 0.00021 4.5E-09 49.7 6.0 45 21-67 1-45 (172)
310 COG5258 GTPBP1 GTPase [General 97.6 0.00031 6.7E-09 54.4 7.2 110 2-115 207-334 (527)
311 KOG0458 Elongation factor 1 al 97.6 0.00023 5E-09 57.3 6.4 102 2-111 261-373 (603)
312 KOG0460 Mitochondrial translat 97.6 0.00035 7.5E-09 53.3 6.9 109 2-123 123-248 (449)
313 KOG0468 U5 snRNP-specific prot 97.5 7.7E-05 1.7E-09 61.1 3.0 61 1-65 202-262 (971)
314 KOG3905 Dynein light intermedi 97.4 0.0043 9.4E-08 47.3 10.9 97 22-122 130-292 (473)
315 cd01852 AIG1 AIG1 (avrRpt2-ind 97.4 0.0018 4E-08 45.6 8.4 113 1-121 54-185 (196)
316 COG0480 FusA Translation elong 97.4 0.00018 3.9E-09 59.9 3.6 62 2-67 82-143 (697)
317 KOG1191 Mitochondrial GTPase [ 97.4 0.00026 5.7E-09 56.1 4.3 108 2-120 322-450 (531)
318 KOG0466 Translation initiation 97.3 0.00032 6.9E-09 52.8 4.2 108 2-123 131-244 (466)
319 PF01926 MMR_HSR1: 50S ribosom 97.3 0.00039 8.5E-09 44.7 3.8 55 1-61 52-116 (116)
320 KOG0082 G-protein alpha subuni 97.3 0.00065 1.4E-08 52.1 5.5 120 1-122 200-346 (354)
321 KOG1490 GTP-binding protein CR 97.3 0.0008 1.7E-08 53.7 6.0 95 20-123 248-344 (620)
322 KOG0461 Selenocysteine-specifi 97.3 0.0012 2.7E-08 50.6 6.7 111 2-126 76-199 (522)
323 KOG1424 Predicted GTP-binding 97.2 0.0004 8.7E-09 55.3 4.2 79 9-104 165-244 (562)
324 COG1161 Predicted GTPases [Gen 97.2 0.00057 1.2E-08 52.2 4.9 90 8-116 23-113 (322)
325 KOG1532 GTPase XAB1, interacts 97.2 0.0012 2.6E-08 49.1 6.0 117 2-120 122-264 (366)
326 PF00503 G-alpha: G-protein al 97.1 0.00067 1.5E-08 53.0 4.1 119 1-119 241-389 (389)
327 PF05783 DLIC: Dynein light in 97.0 0.011 2.4E-07 47.4 10.3 68 53-123 197-267 (472)
328 KOG1143 Predicted translation 97.0 0.0057 1.2E-07 47.5 8.2 107 2-112 255-380 (591)
329 PF00350 Dynamin_N: Dynamin fa 96.9 0.0011 2.5E-08 45.2 3.5 59 1-62 106-168 (168)
330 smart00053 DYNc Dynamin, GTPas 96.9 0.0014 3E-08 48.0 4.0 53 12-67 154-207 (240)
331 PRK10463 hydrogenase nickel in 96.7 0.0044 9.5E-08 46.6 5.4 56 53-118 231-287 (290)
332 KOG0705 GTPase-activating prot 96.6 0.0066 1.4E-07 49.1 6.1 98 15-122 91-191 (749)
333 COG0378 HypB Ni2+-binding GTPa 96.6 0.0066 1.4E-07 42.9 5.3 79 21-119 119-200 (202)
334 cd03110 Fer4_NifH_child This p 96.5 0.014 3E-07 40.4 6.7 77 2-98 99-175 (179)
335 KOG2484 GTPase [General functi 96.4 0.0037 8E-08 48.6 3.6 75 15-103 142-216 (435)
336 KOG0465 Mitochondrial elongati 96.4 0.015 3.3E-07 47.6 7.1 61 2-66 110-170 (721)
337 PF03308 ArgK: ArgK protein; 96.3 0.0083 1.8E-07 44.3 4.9 85 17-120 140-230 (266)
338 TIGR02836 spore_IV_A stage IV 96.3 0.025 5.3E-07 44.8 7.7 85 16-118 140-235 (492)
339 KOG0467 Translation elongation 96.1 0.0071 1.5E-07 50.5 4.0 55 2-63 78-135 (887)
340 COG1163 DRG Predicted GTPase [ 96.0 0.04 8.7E-07 42.0 7.2 49 53-119 240-288 (365)
341 KOG3887 Predicted small GTPase 95.4 0.21 4.6E-06 36.8 8.8 118 1-125 80-207 (347)
342 COG1703 ArgK Putative periplas 95.3 0.17 3.6E-06 38.3 8.2 85 17-120 162-254 (323)
343 PF11111 CENP-M: Centromere pr 95.3 0.42 9E-06 33.3 9.4 89 19-120 64-153 (176)
344 KOG2423 Nucleolar GTPase [Gene 95.2 0.1 2.2E-06 41.1 7.0 89 17-119 211-302 (572)
345 KOG2486 Predicted GTPase [Gene 95.2 0.0097 2.1E-07 44.4 1.3 107 6-117 203-313 (320)
346 KOG0463 GTP-binding protein GP 95.0 0.086 1.9E-06 41.2 6.0 59 2-67 225-288 (641)
347 TIGR00991 3a0901s02IAP34 GTP-b 94.7 0.061 1.3E-06 40.9 4.6 64 1-66 91-167 (313)
348 PF05049 IIGP: Interferon-indu 94.5 0.13 2.9E-06 40.1 6.1 114 1-121 91-219 (376)
349 KOG1954 Endocytosis/signaling 94.2 0.036 7.7E-07 43.2 2.3 57 9-68 171-227 (532)
350 PF04548 AIG1: AIG1 family; I 94.1 0.078 1.7E-06 37.9 3.9 96 17-122 81-188 (212)
351 KOG0448 Mitofusin 1 GTPase, in 94.1 0.26 5.6E-06 41.2 7.2 63 2-68 212-277 (749)
352 KOG0410 Predicted GTP binding 93.4 0.16 3.5E-06 39.0 4.5 82 17-120 255-341 (410)
353 KOG4273 Uncharacterized conser 93.2 0.41 8.8E-06 35.5 6.3 99 19-120 78-222 (418)
354 KOG0469 Elongation factor 2 [T 93.1 0.16 3.4E-06 41.3 4.2 59 2-65 104-163 (842)
355 COG3640 CooC CO dehydrogenase 92.9 0.4 8.7E-06 35.1 5.8 56 4-65 143-198 (255)
356 KOG0099 G protein subunit Galp 92.8 0.16 3.4E-06 37.9 3.6 64 1-67 207-284 (379)
357 KOG0459 Polypeptide release fa 92.7 0.23 5.1E-06 39.1 4.5 103 1-113 162-279 (501)
358 COG1149 MinD superfamily P-loo 92.4 0.85 1.8E-05 34.1 7.0 59 16-94 182-240 (284)
359 cd02038 FleN-like FleN is a me 92.3 0.4 8.6E-06 31.9 4.9 60 2-65 51-110 (139)
360 cd01853 Toc34_like Toc34-like 92.0 0.49 1.1E-05 34.9 5.5 65 1-67 84-164 (249)
361 KOG0464 Elongation factor G [T 91.2 0.028 6.1E-07 44.4 -1.8 61 2-66 108-168 (753)
362 COG1163 DRG Predicted GTPase [ 90.4 4.8 0.0001 31.1 9.4 99 15-119 136-237 (365)
363 PHA02518 ParA-like protein; Pr 90.4 1 2.3E-05 31.6 5.7 60 1-63 82-144 (211)
364 TIGR00064 ftsY signal recognit 89.7 1.3 2.8E-05 33.1 5.9 71 19-112 190-260 (272)
365 KOG2485 Conserved ATP/GTP bind 88.1 1.3 2.9E-05 33.7 5.0 82 16-115 43-126 (335)
366 PF09419 PGP_phosphatase: Mito 87.5 7.5 0.00016 27.0 9.6 86 17-116 36-128 (168)
367 PRK13505 formate--tetrahydrofo 87.5 6.4 0.00014 32.5 8.8 67 40-121 362-430 (557)
368 PRK14974 cell division protein 86.7 2.3 5.1E-05 32.8 5.8 72 19-113 252-323 (336)
369 PF14331 ImcF-related_N: ImcF- 86.5 1.4 2.9E-05 32.9 4.3 48 19-66 25-83 (266)
370 PRK10416 signal recognition pa 86.4 2.9 6.2E-05 32.0 6.1 71 19-112 232-302 (318)
371 TIGR03371 cellulose_yhjQ cellu 82.6 6.6 0.00014 28.3 6.4 60 2-65 121-181 (246)
372 PTZ00258 GTP-binding protein; 82.4 2.5 5.3E-05 33.4 4.3 44 52-105 220-265 (390)
373 PF09547 Spore_IV_A: Stage IV 82.3 10 0.00022 30.6 7.5 81 22-117 148-234 (492)
374 KOG0447 Dynamin-like GTP bindi 82.0 3.1 6.8E-05 34.5 4.7 68 11-91 440-508 (980)
375 cd02036 MinD Bacterial cell di 81.9 8.3 0.00018 26.1 6.4 61 1-66 68-128 (179)
376 cd04170 EF-G_bact Elongation f 81.3 3.9 8.5E-05 30.2 4.9 30 92-121 238-267 (268)
377 PF08438 MMR_HSR1_C: GTPase of 80.9 2.7 5.8E-05 27.0 3.4 32 58-103 1-32 (109)
378 PF10087 DUF2325: Uncharacteri 78.1 7.2 0.00016 24.1 4.7 41 13-59 42-82 (97)
379 cd03115 SRP The signal recogni 76.7 8.9 0.00019 26.1 5.3 43 19-67 112-154 (173)
380 cd01886 EF-G Elongation factor 75.9 9.1 0.0002 28.5 5.4 30 92-121 240-269 (270)
381 cd03111 CpaE_like This protein 75.8 7.6 0.00016 24.4 4.4 56 2-61 49-106 (106)
382 TIGR00959 ffh signal recogniti 75.3 7.1 0.00015 31.3 4.9 63 19-102 212-274 (428)
383 PF03709 OKR_DC_1_N: Orn/Lys/A 74.8 13 0.00027 23.9 5.3 42 19-62 36-77 (115)
384 PRK13185 chlL protochlorophyll 74.2 32 0.00069 25.2 8.3 46 16-63 137-185 (270)
385 TIGR00993 3a0901s04IAP86 chlor 72.8 4.9 0.00011 34.1 3.6 65 1-67 171-251 (763)
386 TIGR03348 VI_IcmF type VI secr 72.6 6.9 0.00015 35.4 4.7 48 18-66 200-257 (1169)
387 PRK00771 signal recognition pa 72.5 12 0.00025 30.1 5.6 79 2-102 182-267 (437)
388 COG0012 Predicted GTPase, prob 72.1 13 0.00028 29.2 5.5 43 52-104 206-248 (372)
389 PF03193 DUF258: Protein of un 71.8 12 0.00027 25.7 4.9 34 83-117 2-35 (161)
390 PF01656 CbiA: CobQ/CobB/MinD/ 69.9 4 8.8E-05 28.0 2.3 53 13-67 110-163 (195)
391 KOG0085 G protein subunit Galp 69.6 0.77 1.7E-05 33.8 -1.5 72 51-122 265-351 (359)
392 PF14606 Lipase_GDSL_3: GDSL-l 69.2 4.6 9.9E-05 28.3 2.3 41 19-59 59-100 (178)
393 COG1512 Beta-propeller domains 67.5 51 0.0011 24.8 8.5 103 19-126 63-168 (271)
394 cd02067 B12-binding B12 bindin 67.5 14 0.00031 23.5 4.3 36 24-60 53-89 (119)
395 PRK09601 GTP-binding protein Y 66.7 9.3 0.0002 29.9 3.8 41 53-104 200-241 (364)
396 COG0523 Putative GTPases (G3E 66.6 50 0.0011 25.4 7.7 77 19-113 116-194 (323)
397 KOG3929 Uncharacterized conser 66.4 6.9 0.00015 29.4 2.9 64 53-122 191-254 (363)
398 cd04169 RF3 RF3 subfamily. Pe 65.5 13 0.00029 27.6 4.4 29 93-121 238-266 (267)
399 cd02032 Bchl_like This family 65.2 52 0.0011 24.1 7.8 47 16-64 135-184 (267)
400 PF02492 cobW: CobW/HypB/UreG, 64.4 17 0.00037 25.0 4.5 45 19-68 113-157 (178)
401 TIGR01425 SRP54_euk signal rec 63.3 18 0.00038 29.1 4.8 42 19-66 212-253 (429)
402 KOG1486 GTP-binding protein DR 62.1 37 0.00081 25.6 5.9 50 53-120 239-288 (364)
403 TIGR01968 minD_bact septum sit 61.4 30 0.00064 25.0 5.5 58 2-64 118-175 (261)
404 PRK10867 signal recognition pa 60.7 23 0.00051 28.4 5.1 62 19-102 213-275 (433)
405 cd02117 NifH_like This family 58.6 62 0.0013 22.8 9.1 61 18-94 140-203 (212)
406 COG1010 CobJ Precorrin-3B meth 56.2 34 0.00074 25.2 4.9 46 16-62 151-197 (249)
407 cd00954 NAL N-Acetylneuraminic 55.3 86 0.0019 23.4 7.5 70 19-102 96-165 (288)
408 COG4963 CpaE Flp pilus assembl 55.3 30 0.00065 27.2 4.7 52 13-66 233-285 (366)
409 cd02037 MRP-like MRP (Multiple 55.1 38 0.00083 22.9 4.9 68 18-94 90-159 (169)
410 PF05014 Nuc_deoxyrib_tr: Nucl 53.7 33 0.00071 21.6 4.2 42 16-64 58-101 (113)
411 cd01844 SGNH_hydrolase_like_6 52.0 63 0.0014 21.9 5.6 43 19-61 57-102 (177)
412 cd03114 ArgK-like The function 51.7 31 0.00067 23.1 3.9 26 2-30 98-123 (148)
413 PRK13849 putative crown gall t 51.7 34 0.00073 24.8 4.4 58 2-63 90-151 (231)
414 PRK10818 cell division inhibit 50.3 78 0.0017 23.1 6.2 60 2-65 120-186 (270)
415 cd02033 BchX Chlorophyllide re 49.9 1.2E+02 0.0025 23.5 7.2 44 20-64 173-219 (329)
416 cd00959 DeoC 2-deoxyribose-5-p 49.6 90 0.002 22.0 6.4 68 19-101 82-151 (203)
417 PF12327 FtsZ_C: FtsZ family, 49.2 62 0.0013 20.0 5.3 52 11-63 27-78 (95)
418 cd02042 ParA ParA and ParB of 48.4 48 0.001 20.2 4.2 39 2-44 46-84 (104)
419 cd03112 CobW_like The function 48.2 29 0.00064 23.4 3.4 42 18-64 117-158 (158)
420 cd07379 MPP_239FB Homo sapiens 48.0 50 0.0011 21.3 4.5 44 17-63 17-61 (135)
421 cd01900 YchF YchF subfamily. 47.9 18 0.00039 27.1 2.5 40 53-104 196-237 (274)
422 PF00205 TPP_enzyme_M: Thiamin 47.5 39 0.00086 21.9 3.9 43 41-100 3-45 (137)
423 KOG1547 Septin CDC10 and relat 47.1 83 0.0018 23.6 5.7 88 19-120 155-243 (336)
424 KOG1534 Putative transcription 46.8 66 0.0014 23.7 5.1 69 52-120 164-251 (273)
425 PRK00007 elongation factor G; 46.5 50 0.0011 28.2 5.2 31 93-123 253-283 (693)
426 PF00735 Septin: Septin; Inte 46.0 90 0.002 23.4 6.0 44 19-67 113-157 (281)
427 PRK13695 putative NTPase; Prov 45.2 95 0.0021 21.0 8.3 46 52-118 126-171 (174)
428 cd01840 SGNH_hydrolase_yrhL_li 45.1 88 0.0019 20.6 6.8 66 18-99 49-115 (150)
429 TIGR01007 eps_fam capsular exo 44.7 89 0.0019 21.7 5.6 47 16-66 147-194 (204)
430 PF07015 VirC1: VirC1 protein; 44.7 76 0.0016 23.3 5.2 95 2-113 90-187 (231)
431 PLN02390 molybdopterin synthas 43.9 73 0.0016 20.5 4.5 41 12-56 61-101 (111)
432 cd04506 SGNH_hydrolase_YpmR_li 43.8 88 0.0019 21.6 5.5 43 18-60 67-129 (204)
433 KOG1487 GTP-binding protein DR 43.6 26 0.00056 26.5 2.7 49 53-119 232-280 (358)
434 PF02310 B12-binding: B12 bind 42.4 77 0.0017 19.8 4.6 39 19-60 51-89 (121)
435 cd08166 MPP_Cdc1_like_1 unchar 42.3 1.1E+02 0.0024 21.8 5.6 86 19-114 42-133 (195)
436 CHL00175 minD septum-site dete 42.2 59 0.0013 24.0 4.5 58 2-64 133-190 (281)
437 KOG2961 Predicted hydrolase (H 41.6 1.2E+02 0.0026 21.1 6.9 84 21-117 42-132 (190)
438 COG4502 5'(3')-deoxyribonucleo 41.3 75 0.0016 21.7 4.3 42 20-62 84-125 (180)
439 KOG1249 Predicted GTPases [Gen 41.1 9 0.00019 31.5 0.0 95 19-119 110-210 (572)
440 cd00477 FTHFS Formyltetrahydro 40.4 2.2E+02 0.0047 23.7 7.8 56 52-120 356-413 (524)
441 TIGR01281 DPOR_bchL light-inde 40.3 1.4E+02 0.0031 21.7 9.7 48 16-65 135-185 (268)
442 PF03358 FMN_red: NADPH-depend 39.8 1.1E+02 0.0023 20.1 5.5 67 16-94 67-137 (152)
443 PF00072 Response_reg: Respons 39.3 51 0.0011 19.9 3.4 39 20-63 44-82 (112)
444 PRK12727 flagellar biosynthesi 39.1 1.4E+02 0.003 25.0 6.4 64 22-108 460-523 (559)
445 KOG1533 Predicted GTPase [Gene 39.1 69 0.0015 23.9 4.2 113 1-116 102-249 (290)
446 cd01828 sialate_O-acetylestera 39.1 1.2E+02 0.0025 20.2 7.8 78 18-100 47-130 (169)
447 cd01820 PAF_acetylesterase_lik 38.1 1.4E+02 0.0029 21.0 5.7 42 19-60 89-136 (214)
448 COG2179 Predicted hydrolase of 37.7 1.4E+02 0.0031 20.9 5.4 62 32-119 45-106 (175)
449 PF09827 CRISPR_Cas2: CRISPR a 37.2 42 0.00091 19.6 2.5 24 22-46 3-26 (78)
450 TIGR01969 minD_arch cell divis 36.9 66 0.0014 23.0 4.0 58 2-65 115-173 (251)
451 PRK13556 azoreductase; Provisi 36.9 63 0.0014 22.8 3.8 44 16-60 86-143 (208)
452 TIGR03566 FMN_reduc_MsuE FMN r 36.5 50 0.0011 22.6 3.2 45 16-61 65-110 (174)
453 COG0329 DapA Dihydrodipicolina 36.2 68 0.0015 24.3 4.1 39 19-60 99-137 (299)
454 PF01251 Ribosomal_S7e: Riboso 36.0 1.1E+02 0.0024 21.7 4.7 45 21-65 54-98 (189)
455 cd00756 MoaE MoaE family. Memb 35.8 1.1E+02 0.0024 20.0 4.5 41 12-56 72-112 (124)
456 PRK05428 HPr kinase/phosphoryl 35.5 1.6E+02 0.0035 22.6 5.9 51 52-120 82-132 (308)
457 cd04502 SGNH_hydrolase_like_7 35.2 1.4E+02 0.003 19.9 6.1 41 19-59 50-96 (171)
458 KOG4175 Tryptophan synthase al 34.3 1.2E+02 0.0027 22.0 4.8 43 17-59 168-214 (268)
459 KOG0961 Predicted Zn2+-depende 34.0 57 0.0012 28.2 3.5 46 7-52 196-241 (1022)
460 COG1908 FrhD Coenzyme F420-red 33.8 1.4E+02 0.0031 19.7 7.3 95 16-122 26-124 (132)
461 KOG0861 SNARE protein YKT6, sy 33.7 25 0.00053 24.7 1.2 13 127-139 186-198 (198)
462 PF00056 Ldh_1_N: lactate/mala 33.0 62 0.0013 21.4 3.1 50 14-63 64-122 (141)
463 cd01831 Endoglucanase_E_like E 32.8 1.5E+02 0.0033 19.7 5.2 40 20-59 56-103 (169)
464 TIGR01763 MalateDH_bact malate 32.5 1E+02 0.0022 23.4 4.5 49 17-65 67-124 (305)
465 COG3523 IcmF Type VI protein s 32.3 96 0.0021 28.5 4.8 50 17-66 212-270 (1188)
466 KOG2655 Septin family protein 32.2 2.6E+02 0.0055 22.2 7.6 90 14-120 122-214 (366)
467 KOG0781 Signal recognition par 32.2 1.3E+02 0.0028 25.0 5.1 50 17-67 494-545 (587)
468 COG1358 RPL8A Ribosomal protei 32.0 56 0.0012 21.2 2.6 42 19-66 43-84 (116)
469 PF07905 PucR: Purine cataboli 31.5 1.4E+02 0.0031 19.1 9.0 61 40-119 62-122 (123)
470 cd00952 CHBPH_aldolase Trans-o 31.5 89 0.0019 23.7 4.1 39 19-58 103-141 (309)
471 PRK14723 flhF flagellar biosyn 31.3 2.6E+02 0.0056 24.6 7.0 82 19-121 293-380 (767)
472 COG4359 Uncharacterized conser 31.3 91 0.002 22.3 3.7 35 81-116 77-111 (220)
473 PF02603 Hpr_kinase_N: HPr Ser 30.7 86 0.0019 20.4 3.4 34 52-103 81-114 (127)
474 PF03641 Lysine_decarbox: Poss 30.6 1.2E+02 0.0026 19.8 4.1 43 16-60 50-92 (133)
475 PRK13507 formate--tetrahydrofo 30.5 3.3E+02 0.0072 23.0 7.9 56 52-120 401-458 (587)
476 cd01832 SGNH_hydrolase_like_1 30.5 1.2E+02 0.0025 20.4 4.3 79 18-101 66-152 (185)
477 KOG2052 Activin A type IB rece 30.3 75 0.0016 25.9 3.5 55 4-59 219-273 (513)
478 PF06490 FleQ: Flagellar regul 30.2 1.5E+02 0.0032 18.7 4.8 25 40-64 57-81 (109)
479 TIGR00683 nanA N-acetylneurami 30.2 1.1E+02 0.0025 22.9 4.4 39 19-58 96-134 (290)
480 cd01836 FeeA_FeeB_like SGNH_hy 29.5 1.8E+02 0.004 19.6 5.6 42 18-59 66-113 (191)
481 PRK12726 flagellar biosynthesi 29.4 1.4E+02 0.0031 23.9 4.9 67 19-109 315-382 (407)
482 cd05294 LDH-like_MDH_nadp A la 29.4 1.4E+02 0.003 22.7 4.8 49 16-64 69-126 (309)
483 PRK14722 flhF flagellar biosyn 29.2 2.5E+02 0.0055 22.2 6.3 86 1-101 221-315 (374)
484 TIGR02313 HpaI-NOT-DapA 2,4-di 29.2 2.5E+02 0.0054 21.1 7.9 39 19-58 95-133 (294)
485 PRK12399 tagatose 1,6-diphosph 29.1 1.6E+02 0.0035 22.8 5.0 38 20-57 121-160 (324)
486 PF00478 IMPDH: IMP dehydrogen 29.0 1.2E+02 0.0025 23.9 4.3 36 22-60 121-156 (352)
487 cd02040 NifH NifH gene encodes 28.4 2.3E+02 0.005 20.5 8.7 43 18-62 140-185 (270)
488 PRK05096 guanosine 5'-monophos 28.3 1.4E+02 0.003 23.4 4.5 39 21-62 122-160 (346)
489 cd01833 XynB_like SGNH_hydrola 28.2 1.7E+02 0.0038 19.0 5.1 41 18-59 39-86 (157)
490 PF14784 ECIST_Cterm: C-termin 28.2 1.3E+02 0.0029 19.8 3.9 38 19-57 83-123 (126)
491 TIGR00484 EF-G translation elo 28.2 98 0.0021 26.4 4.1 31 93-123 252-282 (689)
492 cd02070 corrinoid_protein_B12- 28.1 1.4E+02 0.003 21.0 4.4 36 24-60 136-173 (201)
493 PRK13660 hypothetical protein; 28.1 1.6E+02 0.0034 20.8 4.5 41 16-58 126-166 (182)
494 CHL00072 chlL photochlorophyll 28.1 2.6E+02 0.0057 21.0 9.2 102 17-122 136-246 (290)
495 TIGR03677 rpl7ae 50S ribosomal 27.7 94 0.002 20.0 3.1 40 20-65 43-82 (117)
496 PRK06731 flhF flagellar biosyn 27.6 2.3E+02 0.0051 21.2 5.6 61 19-101 184-245 (270)
497 PF00701 DHDPS: Dihydrodipicol 27.1 93 0.002 23.2 3.5 69 19-102 96-164 (289)
498 PRK06242 flavodoxin; Provision 27.1 97 0.0021 20.3 3.3 64 16-94 40-103 (150)
499 PRK05458 guanosine 5'-monophos 27.0 1.3E+02 0.0028 23.3 4.3 32 24-57 114-145 (326)
500 COG3961 Pyruvate decarboxylase 26.7 2.6E+02 0.0055 23.4 5.9 56 28-100 188-243 (557)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-30 Score=179.85 Aligned_cols=111 Identities=32% Similarity=0.615 Sum_probs=104.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||||||+++..+||++|+|+|+|||+|+..||+.+ ..|+.+++++. +++|.+|||||+|+.+...
T Consensus 63 WDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~---------- 131 (205)
T KOG0084|consen 63 WDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV---------- 131 (205)
T ss_pred eeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------
Confidence 99999999999999999999999999999999999999 99999999998 4789999999999998876
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
|..++++.++..+++..++++||+++.||+++|..|+..+...
T Consensus 132 v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 132 VSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred cCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHh
Confidence 4899999999999984499999999999999999999988654
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-30 Score=177.79 Aligned_cols=112 Identities=31% Similarity=0.589 Sum_probs=103.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||||+|.++.++||++|+++|+|||+++.+||..+ +.|+.++.+.. +++-+.|||||+|+.+.+.
T Consensus 59 WDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~---------- 127 (200)
T KOG0092|consen 59 WDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE---------- 127 (200)
T ss_pred EEcCCcccccccccceecCCcEEEEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------
Confidence 99999999999999999999999999999999999998 99999999887 4677889999999998554
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 124 (150)
|..+++..++...++ .|+++||+++.||+++|..|.+.++....
T Consensus 128 V~~~ea~~yAe~~gl-l~~ETSAKTg~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 128 VEFEEAQAYAESQGL-LFFETSAKTGENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred ccHHHHHHHHHhcCC-EEEEEecccccCHHHHHHHHHHhccCccc
Confidence 589999999999997 99999999999999999999999986543
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.2e-30 Score=177.60 Aligned_cols=113 Identities=28% Similarity=0.559 Sum_probs=105.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|||+|..+..+||++|+++++|||+++..||+++ ..|++.|.++.+ ++|++|||||+|+...+.
T Consensus 66 WDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~---------- 134 (207)
T KOG0078|consen 66 WDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ---------- 134 (207)
T ss_pred EEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------
Confidence 99999999999999999999999999999999999999 789999999996 899999999999987654
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcc
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 125 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 125 (150)
|+.+.++++|..+|+ .|+|+||++|.||+++|..|++.+..+...
T Consensus 135 V~~e~ge~lA~e~G~-~F~EtSAk~~~NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 135 VSKERGEALAREYGI-KFFETSAKTNFNIEEAFLSLARDILQKLED 179 (207)
T ss_pred ccHHHHHHHHHHhCC-eEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence 699999999999998 999999999999999999999999865443
No 4
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=3.2e-28 Score=169.86 Aligned_cols=123 Identities=85% Similarity=1.326 Sum_probs=105.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|+++|..+++.++++||++|+|||++++.||+.+...|++.+.+..++.|++|||||+|+.+.......+.+...+
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v 133 (176)
T cd04133 54 WDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPI 133 (176)
T ss_pred EECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCC
Confidence 99999999999999999999999999999999999997468999998877789999999999997643211122233457
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
..+++..+++.++..+++|+||+++.||+++|+.+++.+.+++
T Consensus 134 ~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~~~ 176 (176)
T cd04133 134 TTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQPP 176 (176)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHhcCC
Confidence 8899999999999757999999999999999999999876653
No 5
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.96 E-value=5.8e-28 Score=170.48 Aligned_cols=123 Identities=49% Similarity=0.830 Sum_probs=102.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||+||++|..+++.|+++||++|+|||++++.||+.+...|...+.+..+++|++|||||.|+.+...... ......
T Consensus 56 ~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 135 (191)
T cd01875 56 WDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQA 135 (191)
T ss_pred EECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCC
Confidence 999999999999999999999999999999999999983369888887767899999999999965421100 000112
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
.+..+++..+++.++..+++++||++|.||+++|..+++.+..+.
T Consensus 136 ~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 136 PITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred CCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhccc
Confidence 357788999999998548999999999999999999999998754
No 6
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=5.4e-28 Score=170.43 Aligned_cols=111 Identities=26% Similarity=0.507 Sum_probs=102.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|+++|..+++.|+++||++|+|||++++.||+.+ ..|++++.+..+++|+||||||.|+..... +
T Consensus 60 wDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v 128 (189)
T cd04121 60 WDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------V 128 (189)
T ss_pred EeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------C
Confidence 99999999999999999999999999999999999998 899999988778999999999999976433 4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
..++++.+++..++ +++++||++|.||+++|+.+++.+..+.
T Consensus 129 ~~~~~~~~a~~~~~-~~~e~SAk~g~~V~~~F~~l~~~i~~~~ 170 (189)
T cd04121 129 ATEQAQAYAERNGM-TFFEVSPLCNFNITESFTELARIVLMRH 170 (189)
T ss_pred CHHHHHHHHHHcCC-EEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 78899999999997 9999999999999999999999887543
No 7
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=2.7e-28 Score=163.29 Aligned_cols=114 Identities=32% Similarity=0.649 Sum_probs=105.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||||+|+.++++||++|.++|+|||++.+++|..+ +.|++++..+. +++-.++||||+|..+.+.
T Consensus 65 WDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~--------- 134 (209)
T KOG0080|consen 65 WDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV--------- 134 (209)
T ss_pred EeccchHhhhccCHhHhccCceeEEEEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc---------
Confidence 99999999999999999999999999999999999998 99999999887 4677889999999765544
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcch
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 126 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 126 (150)
|..++...+++.+++ -|+++||++.+||...|++++..|++.|..-
T Consensus 135 -V~reEG~kfAr~h~~-LFiE~SAkt~~~V~~~FeelveKIi~tp~l~ 180 (209)
T KOG0080|consen 135 -VDREEGLKFARKHRC-LFIECSAKTRENVQCCFEELVEKIIETPSLW 180 (209)
T ss_pred -ccHHHHHHHHHhhCc-EEEEcchhhhccHHHHHHHHHHHHhcCcchh
Confidence 699999999999998 9999999999999999999999999876543
No 8
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.6e-28 Score=166.34 Aligned_cols=112 Identities=31% Similarity=0.522 Sum_probs=103.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||||+|+.+.++|+++++++|+|||+++..||++. ..|++.+..... ++-++|||||.||.+...
T Consensus 76 WDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq--------- 145 (221)
T KOG0094|consen 76 WDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ--------- 145 (221)
T ss_pred EecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh---------
Confidence 99999999999999999999999999999999999999 999999998763 477889999999998866
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 124 (150)
+..++....++.++. .|+++||+.|.||.++|..++..+++...
T Consensus 146 -vs~eEg~~kAkel~a-~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 146 -VSIEEGERKAKELNA-EFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred -hhHHHHHHHHHHhCc-EEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 488999999999997 99999999999999999999999887654
No 9
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.3e-28 Score=167.89 Aligned_cols=109 Identities=29% Similarity=0.583 Sum_probs=103.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||||+|+.++..||++|.|+++|||++...+|+.+ .+|+.+++.+. ++++++|||||+||.+.+.
T Consensus 68 WDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra---------- 136 (222)
T KOG0087|consen 68 WDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA---------- 136 (222)
T ss_pred ecccchhhhccccchhhcccceeEEEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------
Confidence 99999999999999999999999999999999999998 99999999998 6899999999999988655
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
|..+++..++...++ .++++||.++.|++++|..++..|..
T Consensus 137 V~te~~k~~Ae~~~l-~f~EtSAl~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 137 VPTEDGKAFAEKEGL-FFLETSALDATNVEKAFERVLTEIYK 177 (222)
T ss_pred cchhhhHhHHHhcCc-eEEEecccccccHHHHHHHHHHHHHH
Confidence 599999999999997 99999999999999999999988864
No 10
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.2e-28 Score=159.12 Aligned_cols=110 Identities=31% Similarity=0.638 Sum_probs=104.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|||+|+.+...|+++|+++|+|||+++.+||..+ +.|.-.|.... .+.|+|+|+||||+.+++.
T Consensus 75 wDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv---------- 143 (193)
T KOG0093|consen 75 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV---------- 143 (193)
T ss_pred EecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------
Confidence 99999999999999999999999999999999999998 99999999887 5899999999999988876
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
|+.+.+++++..+|. .|||+||+.+.|++++|+.++..|...
T Consensus 144 is~e~g~~l~~~LGf-efFEtSaK~NinVk~~Fe~lv~~Ic~k 185 (193)
T KOG0093|consen 144 ISHERGRQLADQLGF-EFFETSAKENINVKQVFERLVDIICDK 185 (193)
T ss_pred eeHHHHHHHHHHhCh-HHhhhcccccccHHHHHHHHHHHHHHH
Confidence 489999999999998 999999999999999999999988764
No 11
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=4.1e-27 Score=170.44 Aligned_cols=122 Identities=32% Similarity=0.629 Sum_probs=102.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||+|+++|..+++.|+++||++|+|||++++.||+.+...|+..+.+..++.|++|||||+|+........ ......
T Consensus 66 wDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~ 145 (232)
T cd04174 66 WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQA 145 (232)
T ss_pred EeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCC
Confidence 999999999999999999999999999999999999854899999998778899999999999864311100 000123
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCC-CHHHHHHHHHHHHhCC
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~~~~~ 122 (150)
.|..+++.++++.+++..|+++||++|. ||+++|..+++.+.+.
T Consensus 146 ~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 146 PISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred cCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 4788999999999997579999999998 8999999999988654
No 12
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.1e-28 Score=164.20 Aligned_cols=109 Identities=27% Similarity=0.544 Sum_probs=102.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|||.|++++++||++|.|+|+|||++..+||.++ ..|+.+++++. +|+-++|+|||+|+...+.
T Consensus 60 wDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~---------- 128 (216)
T KOG0098|consen 60 WDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE---------- 128 (216)
T ss_pred EecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------
Confidence 99999999999999999999999999999999999998 99999999995 8999999999999987654
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
|..++.+.||+++++ .++++||+++.||+++|....+.+..
T Consensus 129 Vs~EEGeaFA~ehgL-ifmETSakt~~~VEEaF~nta~~Iy~ 169 (216)
T KOG0098|consen 129 VSKEEGEAFAREHGL-IFMETSAKTAENVEEAFINTAKEIYR 169 (216)
T ss_pred ccHHHHHHHHHHcCc-eeehhhhhhhhhHHHHHHHHHHHHHH
Confidence 699999999999997 99999999999999999999888754
No 13
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=159.83 Aligned_cols=109 Identities=30% Similarity=0.642 Sum_probs=102.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||||+|..+.+.||++++++++|||++|..||+.+ ..|+.++++... .+.+++||||+|+-+++.
T Consensus 67 WDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~---------- 135 (218)
T KOG0088|consen 67 WDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ---------- 135 (218)
T ss_pred eeccchHhhhccCceEEeCCCceEEEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------
Confidence 99999999999999999999999999999999999999 999999998874 588999999999988766
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
|+.+++..+++.-|. .|+++||+.+.||.++|..|...+++
T Consensus 136 Vt~qeAe~YAesvGA-~y~eTSAk~N~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 136 VTRQEAEAYAESVGA-LYMETSAKDNVGISELFESLTAKMIE 176 (218)
T ss_pred hhHHHHHHHHHhhch-hheecccccccCHHHHHHHHHHHHHH
Confidence 599999999999996 99999999999999999999988865
No 14
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.94 E-value=1.1e-26 Score=162.98 Aligned_cols=121 Identities=36% Similarity=0.661 Sum_probs=102.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||+|+++|..+++.++++||++|+|||++++.||+.+...|++.+.+..++.|++|||||+|+........ ......
T Consensus 58 wDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~ 137 (182)
T cd04172 58 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQT 137 (182)
T ss_pred EECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCC
Confidence 999999999999999999999999999999999999975799999998888899999999999864311000 000123
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCC-HHHHHHHHHHHHhC
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l~~~~~~ 121 (150)
.|..+++.++++.+++.+|+++||+++.| |.++|..+++..+.
T Consensus 138 ~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 138 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHhc
Confidence 47889999999999965899999999998 99999999986553
No 15
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.94 E-value=5.8e-27 Score=163.67 Aligned_cols=124 Identities=57% Similarity=0.947 Sum_probs=113.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc--ccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY--LADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~ 78 (150)
|||||||+|..+++..|.++|.|++||++.++.||+++...|++++.++++++|+||||+|.|+..+... ..++....
T Consensus 58 wDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~ 137 (198)
T KOG0393|consen 58 WDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLE 137 (198)
T ss_pred eecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999854322 22344556
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 124 (150)
.|..+++..+++..|...|+||||++..|+.++|+..++..+.+++
T Consensus 138 ~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 138 PVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred cccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 7899999999999998799999999999999999999999998775
No 16
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=3.2e-26 Score=160.00 Aligned_cols=120 Identities=36% Similarity=0.659 Sum_probs=101.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||+|+++|..+++.++++||++|+|||++++.||+.+...|+..+.+..++.|+++||||+|+........ ++....
T Consensus 54 wDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~ 133 (178)
T cd04131 54 WDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQA 133 (178)
T ss_pred EECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCC
Confidence 999999999999999999999999999999999999965799999998888999999999999865211000 001123
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCC-HHHHHHHHHHHHh
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVI 120 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l~~~~~ 120 (150)
.|..+++.++++.+++.+|+++||++|.+ |+++|..+++..+
T Consensus 134 ~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 134 PVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 47889999999999976899999999995 9999999998654
No 17
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=3e-26 Score=160.69 Aligned_cols=133 Identities=47% Similarity=0.781 Sum_probs=110.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|..+++.++++||++|+|||++++.||+.+...|+..+....++.|+++|+||+|+..... ....+
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~v 127 (187)
T cd04132 54 WDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN------LDRKV 127 (187)
T ss_pred EECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc------ccCCc
Confidence 999999999999999999999999999999999999984569888877667899999999999865431 11235
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcch-hhhhccCCCceee
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ-KEKKKKQRGCLLN 139 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~-~~~~~~~~~c~~~ 139 (150)
...++.+++..++..+++++||++|.|+.++|..+++.+....... ..+++++.+|.+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 128 TPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred CHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 6788889999998768999999999999999999999998765443 3344455666654
No 18
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.94 E-value=5.6e-26 Score=160.02 Aligned_cols=135 Identities=36% Similarity=0.596 Sum_probs=108.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||+|+++|..+++.+++++|++|+|||++++.+|+.+...|+..+....++.|+++|+||+|+........ ......
T Consensus 53 ~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~ 132 (189)
T cd04134 53 WDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKH 132 (189)
T ss_pred EECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCC
Confidence 999999999999999999999999999999999999873469999988777899999999999976432100 001111
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhhccCCCceee
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN 139 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~c~~~ 139 (150)
.+..+++..+++..+..+++++||++|.|++++|..+++.++.+.. ..++++.|+||
T Consensus 133 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~~----~~~~~~~~~~~ 189 (189)
T cd04134 133 TISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVRP----PHPHSSACTIA 189 (189)
T ss_pred CCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhcccc----cCcCCCcceeC
Confidence 3466778888888874489999999999999999999999986543 44556778775
No 19
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=5.1e-27 Score=155.28 Aligned_cols=110 Identities=31% Similarity=0.548 Sum_probs=103.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||||+|+.+...||++.+++++|||+++.+||.++ .+|+++++..++.+|-++||||.|+++.+. |
T Consensus 62 wDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V 130 (198)
T KOG0079|consen 62 WDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------V 130 (198)
T ss_pred eecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------e
Confidence 99999999999999999999999999999999999999 999999999999999999999999987665 5
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..++++.|+..+++ .+|++||+.+.|++.+|.-|.++.+.-
T Consensus 131 ~t~dAr~~A~~mgi-e~FETSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 131 DTEDARAFALQMGI-ELFETSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred ehHHHHHHHHhcCc-hheehhhhhcccchHHHHHHHHHHHHH
Confidence 88999999999998 999999999999999999998877643
No 20
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.94 E-value=2.2e-26 Score=162.19 Aligned_cols=109 Identities=31% Similarity=0.601 Sum_probs=96.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccccccccCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||||+++|..+++.+++++|++|+|||++++.||+.+ ..|+..+.... ++.|+++|+||+|+.....
T Consensus 52 ~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~------- 123 (190)
T cd04144 52 LDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE------- 123 (190)
T ss_pred EECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc-------
Confidence 99999999999999999999999999999999999998 88988886543 4689999999999875433
Q ss_pred CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+...+...+++.+++ +++++||++|.|++++|+.+++.+..
T Consensus 124 ---v~~~~~~~~~~~~~~-~~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 124 ---VSTEEGAALARRLGC-EFIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred ---cCHHHHHHHHHHhCC-EEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 366777888888887 89999999999999999999988753
No 21
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=3.2e-26 Score=162.90 Aligned_cols=110 Identities=28% Similarity=0.602 Sum_probs=98.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..+++.|+++||++|+|||++++.||+.+ ..|+..+.+.. +++|+++||||+|+.....
T Consensus 54 wDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~---------- 122 (202)
T cd04120 54 WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE---------- 122 (202)
T ss_pred EeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------
Confidence 99999999999999999999999999999999999998 89999888765 5799999999999975433
Q ss_pred cCHHHHHHHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 80 VTTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+...++.++++.. ++ .++++||++|.||+++|..+++.+...
T Consensus 123 v~~~~~~~~a~~~~~~-~~~etSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 123 ISRQQGEKFAQQITGM-RFCEASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred cCHHHHHHHHHhcCCC-EEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 5778888898885 65 899999999999999999999988654
No 22
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.94 E-value=4.8e-26 Score=164.00 Aligned_cols=122 Identities=39% Similarity=0.682 Sum_probs=103.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||+|+++|..+++.+++++|++|+|||++++.+|+.+...|...+....+++|++|||||+|+........ ......
T Consensus 54 wDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~ 133 (222)
T cd04173 54 WDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLI 133 (222)
T ss_pred EeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCC
Confidence 999999999999999999999999999999999999986789888887778999999999999965421111 011223
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCC-HHHHHHHHHHHHhCC
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l~~~~~~~ 122 (150)
+|..+++..+++..+..+|+||||+++.+ |.++|..++...+.+
T Consensus 134 pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 134 PVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred ccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 57889999999999966999999999885 999999999987654
No 23
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.94 E-value=3.4e-26 Score=156.21 Aligned_cols=114 Identities=28% Similarity=0.476 Sum_probs=102.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-----CCCEEEEeeCCCcccccccccCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-----GVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||||||+|.+|.-.+|++||++++|||++++.||+.+ ..|.+++...++ ..|+||+|||+|+.....
T Consensus 63 WDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~------ 135 (210)
T KOG0394|consen 63 WDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS------ 135 (210)
T ss_pred EecccHHHhhhcccceecCCceEEEEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc------
Confidence 99999999999999999999999999999999999998 999998887662 589999999999876321
Q ss_pred CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+-|+...++.||+..|-.||||+|||.+.||+++|..+++..+...
T Consensus 136 --r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 136 --RQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred --ceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhcc
Confidence 2268899999999998779999999999999999999999988664
No 24
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=9.1e-26 Score=151.58 Aligned_cols=109 Identities=28% Similarity=0.522 Sum_probs=99.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCC-EEEEeeCCCcccccccccCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVP-VVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~p-iilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||||||+|++++.+||+++-++++|||+++..||+++ +.|+.+...+. |..+ +.|||.|+|+.+.+.
T Consensus 63 wdtagqerfrsitksyyrnsvgvllvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq-------- 133 (213)
T KOG0091|consen 63 WDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ-------- 133 (213)
T ss_pred eeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc--------
Confidence 99999999999999999999999999999999999999 99999888765 3444 579999999987655
Q ss_pred CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
|+.++++.++..+|+ .|+|+||++|.||++.|..+.+.+..
T Consensus 134 --Vt~EEaEklAa~hgM-~FVETSak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 134 --VTAEEAEKLAASHGM-AFVETSAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred --ccHHHHHHHHHhcCc-eEEEecccCCCcHHHHHHHHHHHHHH
Confidence 699999999999998 99999999999999999999887753
No 25
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=1.5e-26 Score=150.89 Aligned_cols=109 Identities=31% Similarity=0.584 Sum_probs=101.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|||+|++..-.||++||+.+++||+.+..||++. +.|+.+|.++. ..+.++++|||+|+..++.
T Consensus 52 wdtagqerfrsvt~ayyrda~allllydiankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~---------- 120 (192)
T KOG0083|consen 52 WDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA---------- 120 (192)
T ss_pred eeccchHHHhhhhHhhhcccceeeeeeecccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------
Confidence 99999999999999999999999999999999999999 99999999887 4688999999999987765
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
|..++...+++.|++ ||+++||++|.|++..|-.+++.+.+
T Consensus 121 v~~ddg~kla~~y~i-pfmetsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 121 VKRDDGEKLAEAYGI-PFMETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cccchHHHHHHHHCC-CceeccccccccHhHHHHHHHHHHHH
Confidence 488999999999998 99999999999999999999987754
No 26
>PTZ00099 rab6; Provisional
Probab=99.93 E-value=2.8e-25 Score=154.99 Aligned_cols=111 Identities=26% Similarity=0.454 Sum_probs=99.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..+++.|+++||++|+|||++++.+|+++ ..|+..+.+.. +++|++||+||+|+.....
T Consensus 34 wDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~---------- 102 (176)
T PTZ00099 34 WDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNERGKDVIIALVGNKTDLGDLRK---------- 102 (176)
T ss_pred EECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------
Confidence 99999999999999999999999999999999999998 89998887654 5799999999999875432
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+...++..+++.+++ .++++||++|.||+++|+.|++.+.+.+
T Consensus 103 v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 103 VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 477788888888887 8999999999999999999999987644
No 27
>PTZ00369 Ras-like protein; Provisional
Probab=99.93 E-value=8.1e-25 Score=154.07 Aligned_cols=110 Identities=31% Similarity=0.565 Sum_probs=97.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..|++++|++|+|||++++.+|+.+ ..|...+.+.. ++.|+++|+||+|+.+...
T Consensus 58 ~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~--------- 127 (189)
T PTZ00369 58 LDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ--------- 127 (189)
T ss_pred EeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc---------
Confidence 99999999999999999999999999999999999998 88988887654 4789999999999865433
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+...++..+++.++. +++++||++|.||.++|..+++.+...
T Consensus 128 -i~~~~~~~~~~~~~~-~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 128 -VSTGEGQELAKSFGI-PFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred -cCHHHHHHHHHHhCC-EEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 366777888888887 999999999999999999999888643
No 28
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.93 E-value=3.7e-25 Score=159.24 Aligned_cols=120 Identities=24% Similarity=0.369 Sum_probs=97.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCccccccc---------
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHY--------- 70 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~--------- 70 (150)
|||+|+++|..+++.|++++|++|+|||++++.||+.+ ..|...+.+.. +++|+|+||||+|+.+....
T Consensus 49 wDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l-~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~ 127 (220)
T cd04126 49 WDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEEL-EDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGD 127 (220)
T ss_pred EeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccc
Confidence 99999999999999999999999999999999999998 66666665543 57999999999999752110
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCC-------------cEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 71 LADHPGLVPVTTAQGEELRKQIGA-------------SYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~-------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
.......+.|..+++..+++..+. .+|+++||++|.||+++|..+++.++.
T Consensus 128 ~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 128 RVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 000111345788999999998761 379999999999999999999988764
No 29
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.5e-25 Score=149.99 Aligned_cols=111 Identities=32% Similarity=0.505 Sum_probs=103.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||||+|+++...++++|-+|+++||+++..||-++ ..|+..+..++ ++..|+++|||+|+.+.+.
T Consensus 72 WDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~--------- 141 (219)
T KOG0081|consen 72 WDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV--------- 141 (219)
T ss_pred eccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh---------
Confidence 99999999999999999999999999999999999999 99999999776 6777999999999998776
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
|...++..++.++++ |||++||-++.||++..+.|+..+++..
T Consensus 142 -Vs~~qa~~La~kygl-PYfETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 142 -VSEDQAAALADKYGL-PYFETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred -hhHHHHHHHHHHhCC-CeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence 588999999999998 9999999999999999999998887643
No 30
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.92 E-value=7.1e-25 Score=155.80 Aligned_cols=108 Identities=25% Similarity=0.464 Sum_probs=96.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|+++|..+++.|++++|++|+|||++++.||+.+ ..|+..+.+..+++|+++||||+|+.... +
T Consensus 49 wDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v 116 (200)
T smart00176 49 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------V 116 (200)
T ss_pred EECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------C
Confidence 99999999999999999999999999999999999998 89999999887889999999999986422 2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..+. ..+++..++ +|+++||++|.||.++|..|++.+.+.
T Consensus 117 ~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 117 KAKS-ITFHRKKNL-QYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred CHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 3333 467788887 999999999999999999999988764
No 31
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=1.1e-24 Score=154.28 Aligned_cols=115 Identities=39% Similarity=0.608 Sum_probs=95.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc--------c-
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY--------L- 71 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~--------~- 71 (150)
|||||+++ .+++.++++||++|+|||++++.||+.+...|+..+.+..++.|+++||||+|+...... +
T Consensus 71 wDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 148 (195)
T cd01873 71 WDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLA 148 (195)
T ss_pred EeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccc
Confidence 99999987 366789999999999999999999999833699999887778999999999998642110 0
Q ss_pred cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 72 ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
........|..+++.++++.+++ +|+++||++|.||+++|+.+++.
T Consensus 149 ~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 149 RPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 00011245789999999999998 99999999999999999999874
No 32
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.92 E-value=1.1e-24 Score=151.73 Aligned_cols=119 Identities=47% Similarity=0.840 Sum_probs=99.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||+|+++|..+++.+++++|++|+|||++++.+|+.+...|+..+....+++|+++||||+|+........ .....+
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~ 133 (175)
T cd01874 54 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQK 133 (175)
T ss_pred EECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCC
Confidence 999999999999999999999999999999999999983369999987777899999999999865421100 011124
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.+..+++.++++..+..+++++||++|.|++++|+.+++..
T Consensus 134 ~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 134 PITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred CcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 57888999999998844899999999999999999998754
No 33
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.92 E-value=2.2e-24 Score=149.37 Aligned_cols=121 Identities=54% Similarity=0.910 Sum_probs=102.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc--cCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~ 78 (150)
|||+|+++|..+++.+++++|++|+|||++++.||+.+...|+..+....+++|+++|+||+|+....... ..+....
T Consensus 51 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 130 (174)
T smart00174 51 WDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQE 130 (174)
T ss_pred EECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCC
Confidence 99999999999999999999999999999999999998456999998877899999999999987532110 0111223
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
.+..+++..+++..+..+++++||+++.|++++|+.+++.++.
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 131 PVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred CccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 4678888999999987689999999999999999999998764
No 34
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.92 E-value=2e-24 Score=150.34 Aligned_cols=118 Identities=54% Similarity=0.920 Sum_probs=98.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||+|+++|..+++.+++++|++|+|||++++.||+.+...|+..+....++.|+++||||+|+.+...... ......
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~ 133 (174)
T cd01871 54 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 133 (174)
T ss_pred EECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCC
Confidence 999999999999999999999999999999999999984469888887777899999999999864321000 001123
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
.+..+++..+++.++..+++++||++|.|++++|+.+++.
T Consensus 134 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 134 PITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred CCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 4788999999999986599999999999999999999864
No 35
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.92 E-value=1.5e-24 Score=150.63 Aligned_cols=109 Identities=22% Similarity=0.516 Sum_probs=98.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..+++.+++++|++|+|||++++.||+.+ ..|...+.+.. +++|+++|+||+|+.+...
T Consensus 55 ~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~--------- 124 (172)
T cd04141 55 LDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ--------- 124 (172)
T ss_pred EeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc---------
Confidence 99999999999999999999999999999999999998 78888777643 5799999999999876433
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||++|.||+++|+.+++.+..
T Consensus 125 -v~~~~~~~~a~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 125 -VTTEEGRNLAREFNC-PFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred -cCHHHHHHHHHHhCC-EEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 477888999999997 99999999999999999999998875
No 36
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.92 E-value=2.8e-24 Score=152.56 Aligned_cols=109 Identities=29% Similarity=0.507 Sum_probs=99.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|..++..++++++++++|||++++.+|+.+ ..|+..+....++.|+++|+||+|+..... +
T Consensus 60 ~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~ 128 (199)
T cd04110 60 WDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------V 128 (199)
T ss_pred EeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------c
Confidence 89999999999999999999999999999999999998 899999988778899999999999876443 3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
...++..+++.+++ +++++||++|.||+++|+.+++.++.
T Consensus 129 ~~~~~~~~~~~~~~-~~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 129 ETEDAYKFAGQMGI-SLFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred CHHHHHHHHHHcCC-EEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 66788888888886 89999999999999999999998865
No 37
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.92 E-value=3e-24 Score=154.12 Aligned_cols=109 Identities=22% Similarity=0.322 Sum_probs=97.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccccccccCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||+|++.|..+++.++++||++|+|||++++.+|+++ ..|+..+.+.. .+.|+++|+||+|+.+...
T Consensus 55 ~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~------- 126 (215)
T cd04109 55 WDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT------- 126 (215)
T ss_pred EECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc-------
Confidence 99999999999999999999999999999999999998 89999988764 2468999999999975433
Q ss_pred CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..++...+++.+++ +++++||++|.|++++|+.+++.+..
T Consensus 127 ---v~~~~~~~~~~~~~~-~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 127 ---VKDDKHARFAQANGM-ESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred ---cCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 477888899999997 89999999999999999999998864
No 38
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.92 E-value=3.7e-24 Score=147.49 Aligned_cols=109 Identities=26% Similarity=0.576 Sum_probs=98.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..+++.+++++|++|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.....
T Consensus 56 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~---------- 124 (166)
T cd04122 56 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD---------- 124 (166)
T ss_pred EECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------
Confidence 99999999999999999999999999999999999998 89998887654 5789999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++..++ +++++||++|.|++++|..+++.+.+
T Consensus 125 ~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 125 VTYEEAKQFADENGL-LFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred cCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 477888899999887 99999999999999999999988753
No 39
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.92 E-value=2.7e-24 Score=149.77 Aligned_cols=109 Identities=31% Similarity=0.544 Sum_probs=98.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..+++.+++++|++++|||++++.||+++ ..|+..+.... ++.|+++|+||+|+.+...
T Consensus 68 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~--------- 137 (180)
T cd04127 68 WDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ--------- 137 (180)
T ss_pred EeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc---------
Confidence 99999999999999999999999999999999999998 89999887654 5789999999999976543
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||+++.|++++|+.+++.+++
T Consensus 138 -v~~~~~~~~~~~~~~-~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 138 -VSEEQAKALADKYGI-PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred -cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 377888999999997 99999999999999999999988764
No 40
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=6e-25 Score=146.30 Aligned_cols=110 Identities=25% Similarity=0.499 Sum_probs=102.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||||+|+++.+.||++|-++++|||++++++|+.+ ..|+..++..+ +++-++++|||.|+.+++.
T Consensus 63 WDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~---------- 131 (214)
T KOG0086|consen 63 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE---------- 131 (214)
T ss_pred eecccHHHHHHHHHHHhccccceEEEEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------
Confidence 99999999999999999999999999999999999998 99999999888 5888999999999987765
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
|+..++..+++...+ -+.++||++|+|+++.|-..++.|+.+
T Consensus 132 VtflEAs~FaqEnel-~flETSa~TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 132 VTFLEASRFAQENEL-MFLETSALTGENVEEAFLKCARTILNK 173 (214)
T ss_pred hhHHHHHhhhcccce-eeeeecccccccHHHHHHHHHHHHHHH
Confidence 588999999999987 899999999999999999999988753
No 41
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=5.5e-24 Score=151.16 Aligned_cols=111 Identities=23% Similarity=0.414 Sum_probs=98.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccccccCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||||+++|..+++.++++|+++|+|||++++.+|+.+ ..|+..+.... .++|+++|+||+|+.....
T Consensus 55 ~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~------ 127 (201)
T cd04107 55 WDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA------ 127 (201)
T ss_pred EECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc------
Confidence 99999999999999999999999999999999999998 89988876432 4789999999999975333
Q ss_pred CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+..+++..+++.++..+++++||++|.|++++|+.+++.+...
T Consensus 128 ----~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 128 ----KDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred ----cCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 4778899999999855999999999999999999999988754
No 42
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.91 E-value=9.7e-24 Score=145.76 Aligned_cols=109 Identities=28% Similarity=0.505 Sum_probs=95.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+.+..+++|+++|+||+|+....
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~------------ 120 (166)
T cd00877 54 WDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK------------ 120 (166)
T ss_pred EECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc------------
Confidence 99999999999999999999999999999999999998 89999999887789999999999987332
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
.......+++..++ +++++||++|.|++++|+.|++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 162 (166)
T cd00877 121 VKAKQITFHRKKNL-QYYEISAKSNYNFEKPFLWLARKLLGNP 162 (166)
T ss_pred CCHHHHHHHHHcCC-EEEEEeCCCCCChHHHHHHHHHHHHhcc
Confidence 22334566666665 8999999999999999999999998644
No 43
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.91 E-value=8.1e-24 Score=152.36 Aligned_cols=108 Identities=25% Similarity=0.441 Sum_probs=96.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|+++|..++..|++++|++|+|||++++.+|+.+ ..|+..+.+..+++|+++||||+|+.... +
T Consensus 67 ~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v 134 (219)
T PLN03071 67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------V 134 (219)
T ss_pred EECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------C
Confidence 99999999999999999999999999999999999998 89999999877889999999999986432 2
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..+++ .+++..++ +|+++||++|.||.++|..|++.+.+.
T Consensus 135 ~~~~~-~~~~~~~~-~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 135 KAKQV-TFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CHHHH-HHHHhcCC-EEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 34444 67777787 899999999999999999999998754
No 44
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1.4e-23 Score=148.00 Aligned_cols=110 Identities=30% Similarity=0.596 Sum_probs=98.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+++++ ..|+..+.+..+ +.|+++|+||+|+.....
T Consensus 55 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~---------- 123 (191)
T cd04112 55 WDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV---------- 123 (191)
T ss_pred EeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------
Confidence 99999999999999999999999999999999999998 889999988764 799999999999875433
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+...+...+++.++. +++++||++|.|++++|..+++.+.+.
T Consensus 124 ~~~~~~~~l~~~~~~-~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 124 VKREDGERLAKEYGV-PFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 366788888888887 999999999999999999999988765
No 45
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.90 E-value=1.8e-23 Score=143.03 Aligned_cols=107 Identities=29% Similarity=0.574 Sum_probs=94.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..+++.+++++|++++|||++++.+++.+ ..|...+.+.. ++.|+++|+||+|+.....
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------- 123 (163)
T cd04136 54 LDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV--------- 123 (163)
T ss_pred EECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce---------
Confidence 99999999999999999999999999999999999998 88988887653 4799999999999875433
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+..++...+++.++. +++++||+++.|+.++|+.+++.+
T Consensus 124 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 124 -VSREEGQALARQWGC-PFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred -ecHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHhc
Confidence 366677788888885 999999999999999999998765
No 46
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.90 E-value=2.2e-23 Score=146.12 Aligned_cols=116 Identities=25% Similarity=0.433 Sum_probs=96.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..+++.++++||++++|||++++.+|+++ ..|+..+.+..+ ..| ++||||+|+...... ....
T Consensus 54 wDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~-----~~~~ 126 (182)
T cd04128 54 WDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLPP-----EEQE 126 (182)
T ss_pred EeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhccccccc-----hhhh
Confidence 99999999999999999999999999999999999998 899999987654 455 789999998642110 0011
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 124 (150)
...+++..+++.+++ +++++||++|.|++++|+.+++.+.+-+.
T Consensus 127 ~~~~~~~~~a~~~~~-~~~e~SAk~g~~v~~lf~~l~~~l~~~~~ 170 (182)
T cd04128 127 EITKQARKYAKAMKA-PLIFCSTSHSINVQKIFKIVLAKAFDLPL 170 (182)
T ss_pred hhHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Confidence 234677888999996 99999999999999999999998876443
No 47
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=2e-23 Score=146.70 Aligned_cols=110 Identities=31% Similarity=0.521 Sum_probs=98.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..+++.+++++|++|+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.+...
T Consensus 54 ~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~---------- 122 (188)
T cd04125 54 WDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV---------- 122 (188)
T ss_pred EECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------
Confidence 99999999999999999999999999999999999998 88999998765 4689999999999876543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+.......+++..++ +++++||+++.|++++|..+++.+...
T Consensus 123 v~~~~~~~~~~~~~~-~~~evSa~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 123 VDSNIAKSFCDSLNI-PFFETSAKQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred CCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 366777888888887 999999999999999999999988653
No 48
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.90 E-value=2.6e-23 Score=142.80 Aligned_cols=107 Identities=26% Similarity=0.570 Sum_probs=95.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..+++.+++++|++++|||++++.+|+.+ ..|...+.... ++.|+++|+||+|+.....
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------- 123 (164)
T cd04175 54 LDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV--------- 123 (164)
T ss_pred EECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE---------
Confidence 99999999999999999999999999999999999998 78888887543 5799999999999976543
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+...++..+++.+++ +++++||+++.|+.++|..+++.+
T Consensus 124 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 124 -VGKEQGQNLARQWGC-AFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred -EcHHHHHHHHHHhCC-EEEEeeCCCCCCHHHHHHHHHHHh
Confidence 366677788888887 999999999999999999998765
No 49
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.90 E-value=2.8e-23 Score=142.72 Aligned_cols=106 Identities=31% Similarity=0.610 Sum_probs=96.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..+++.+++++|++++|||++++.||+.+ ..|++.+....+ +.|+++|+||.|+.....
T Consensus 54 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~---------- 122 (161)
T cd04117 54 WDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ---------- 122 (161)
T ss_pred EeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------
Confidence 99999999999999999999999999999999999998 899998887664 699999999999876543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
+..+++..+++.+++ +++++||++|.|++++|..|++.
T Consensus 123 v~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 123 VGDEQGNKLAKEYGM-DFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHhh
Confidence 477889999999987 99999999999999999999864
No 50
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.90 E-value=4.8e-23 Score=141.46 Aligned_cols=107 Identities=26% Similarity=0.496 Sum_probs=94.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|+++|..+++.+++++|++|+|||++++.+++++ ..|+..+.+..++.|+++|+||+|+...
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~------------- 119 (161)
T cd04124 54 WDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS------------- 119 (161)
T ss_pred EeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------
Confidence 99999999999999999999999999999999999998 8999999877778999999999998432
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
...+...++...++ +++++||+++.|++++|+.+++.+..+
T Consensus 120 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 120 VTQKKFNFAEKHNL-PLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 23445566777776 899999999999999999999988754
No 51
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.90 E-value=5e-23 Score=141.78 Aligned_cols=109 Identities=31% Similarity=0.643 Sum_probs=97.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..++..+++++|++++|||++++.+++.+ ..|++.+.+.. ++.|+++|+||+|+.+...
T Consensus 55 ~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~---------- 123 (165)
T cd01865 55 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV---------- 123 (165)
T ss_pred EECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------
Confidence 99999999999999999999999999999999999998 89999998766 4799999999999976543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+...++++.+++ +++++||+++.|++++|+.+++.+..
T Consensus 124 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 124 VSSERGRQLADQLGF-EFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred cCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 366778888888887 89999999999999999999987653
No 52
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.90 E-value=4.6e-23 Score=141.35 Aligned_cols=107 Identities=25% Similarity=0.577 Sum_probs=94.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..+++.|++++|++++|||++++.+|+++ ..|...+.+.. .++|+++|+||+|+.....
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~--------- 123 (163)
T cd04176 54 LDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE--------- 123 (163)
T ss_pred EECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc---------
Confidence 99999999999999999999999999999999999998 88988887654 5799999999999865432
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+...+...++..++. +++++||+++.|+.++|..+++.+
T Consensus 124 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 124 -VSSAEGRALAEEWGC-PFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred -cCHHHHHHHHHHhCC-EEEEecCCCCCCHHHHHHHHHHhc
Confidence 355677888888886 999999999999999999998754
No 53
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.90 E-value=5.9e-23 Score=141.65 Aligned_cols=109 Identities=29% Similarity=0.549 Sum_probs=98.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..++..++++||++|+|||++++.+|+.+ ..|+..+.+.. .+.|+++|+||+|+.+...
T Consensus 57 ~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~---------- 125 (167)
T cd01867 57 WDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV---------- 125 (167)
T ss_pred EeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------
Confidence 89999999999999999999999999999999999998 88999998765 4799999999999976433
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||+++.|++++|+.+++.+..
T Consensus 126 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 126 VSKEEGEALADEYGI-KFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 366788888998887 99999999999999999999998764
No 54
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.90 E-value=3.8e-23 Score=141.53 Aligned_cols=108 Identities=35% Similarity=0.776 Sum_probs=100.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
||++|+++|..++..+++++|++|+|||++++.||+.+ ..|++.+....+ +.|+++||||.|+.....
T Consensus 53 ~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~---------- 121 (162)
T PF00071_consen 53 WDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE---------- 121 (162)
T ss_dssp EEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccceeeecccccccccc----------
Confidence 99999999999999999999999999999999999998 899999999887 799999999999887443
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+..+++..+++.++. +|+++||+++.||.++|..+++.+.
T Consensus 122 v~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 122 VSVEEAQEFAKELGV-PYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp SCHHHHHHHHHHTTS-EEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhCC-EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999995 9999999999999999999999875
No 55
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.90 E-value=5.8e-23 Score=141.34 Aligned_cols=108 Identities=28% Similarity=0.578 Sum_probs=97.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..++..+++++|++|+|||++++.+|+.+ ..|+..+.+.. ++.|+++|+||+|+.....
T Consensus 56 ~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~---------- 124 (166)
T cd01869 56 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV---------- 124 (166)
T ss_pred EECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------
Confidence 89999999999999999999999999999999999998 88999988766 5799999999999876443
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+..+++..+++.+++ +++++||++|.|++++|..+++.+.
T Consensus 125 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 125 VDYSEAQEFADELGI-PFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCHHHHHHHHHHcCC-eEEEEECCCCcCHHHHHHHHHHHHH
Confidence 367888899999987 9999999999999999999998875
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.90 E-value=5.4e-23 Score=140.70 Aligned_cols=106 Identities=29% Similarity=0.515 Sum_probs=96.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|..+++.+++++|++++|||++++.+++.+ ..|+..+....+++|+++|+||+|+..... +
T Consensus 56 ~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v 124 (162)
T cd04106 56 WDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------I 124 (162)
T ss_pred eeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------C
Confidence 99999999999999999999999999999999999998 899999887778899999999999876443 3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
..+++..+++.+++ +++++||+++.|++++|+.+...
T Consensus 125 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 125 TNEEAEALAKRLQL-PLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred CHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHh
Confidence 66788889999998 99999999999999999998754
No 57
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.90 E-value=1.6e-22 Score=142.09 Aligned_cols=122 Identities=43% Similarity=0.690 Sum_probs=101.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|+++|..+.+.+++.+|++++|||++++++|+.+...|+..+.+..+++|+++|+||+|+...............+
T Consensus 54 ~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~ 133 (187)
T cd04129 54 WDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFV 133 (187)
T ss_pred EECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcC
Confidence 89999999998888899999999999999999999998447999998877889999999999985432110011122345
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
...+...+++.++..+++++||++|.|++++|+.+++.++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 134 PIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLV 175 (187)
T ss_pred CHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcc
Confidence 677888999999866899999999999999999999888754
No 58
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.89 E-value=1.8e-22 Score=142.24 Aligned_cols=114 Identities=31% Similarity=0.484 Sum_probs=98.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|+++|..++..+++++|++++|||++++.+++.+ ..|+..+....++.|+++|+||+|+..... ....+
T Consensus 55 ~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~------~~~~v 127 (193)
T cd04118 55 WDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQV 127 (193)
T ss_pred EECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc------ccCcc
Confidence 99999999999999999999999999999999999998 889999988767899999999999864321 11234
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
...++..++..++. +++++||+++.|++++|+.+++.+...
T Consensus 128 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 128 DFHDVQDFADEIKA-QHFETSSKTGQNVDELFQKVAEDFVSR 168 (193)
T ss_pred CHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 56677888888886 899999999999999999999988653
No 59
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.89 E-value=1.7e-22 Score=140.19 Aligned_cols=117 Identities=45% Similarity=0.837 Sum_probs=97.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc--cCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~ 78 (150)
|||||+++|..+++.+++++|++|+|||++++.+|+.+...|+..+....++.|+++|+||.|+....... ......+
T Consensus 53 ~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 132 (173)
T cd04130 53 CDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEK 132 (173)
T ss_pred EECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCC
Confidence 99999999999999999999999999999999999987457998888766789999999999986532100 0001223
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
.+..+++..+++..+..+++++||+++.|++++|+.++-
T Consensus 133 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 133 PVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 467788999999998768999999999999999998764
No 60
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.89 E-value=1.5e-22 Score=138.81 Aligned_cols=108 Identities=22% Similarity=0.486 Sum_probs=96.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC------CCCCEEEEeeCCCcccccccccCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS------PGVPVVLVGTKLDLREDKHYLADH 74 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~------~~~piilv~nK~D~~~~~~~~~~~ 74 (150)
|||+|+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+.+.. .+.|+++|+||+|+.+...
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----- 127 (168)
T cd04119 54 FDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----- 127 (168)
T ss_pred EECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc-----
Confidence 99999999999999999999999999999999999998 89999888764 3589999999999874332
Q ss_pred CCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 75 PGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+..++...+++..++ +++++||+++.|++++|+.+++.++
T Consensus 128 -----~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 128 -----VSEDEGRLWAESKGF-KYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred -----cCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367788888888886 8999999999999999999998876
No 61
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.89 E-value=3.6e-22 Score=138.29 Aligned_cols=119 Identities=51% Similarity=0.903 Sum_probs=99.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc--cCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~ 78 (150)
|||||+++|..+++.+++++|++++|||++++.+|+.+...|...+....++.|+++|+||+|+.+..... ..+....
T Consensus 53 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~ 132 (174)
T cd04135 53 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEK 132 (174)
T ss_pred EeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCC
Confidence 89999999999999999999999999999999999998557888887766789999999999986543110 0111123
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.+..+++..+++..+..+++++||+++.|++++|+.++..+
T Consensus 133 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 133 PVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 46778899999999977899999999999999999999875
No 62
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.89 E-value=1.5e-22 Score=139.37 Aligned_cols=106 Identities=24% Similarity=0.459 Sum_probs=92.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccccccccCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||+|+++|..++..+++.++++|+|||++++.+++.+ ..|+..+.+.. ++.|+++|+||+|+.....
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~------- 125 (165)
T cd04140 54 TDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE------- 125 (165)
T ss_pred EECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe-------
Confidence 89999999999999999999999999999999999998 88887776543 4799999999999865332
Q ss_pred CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
+...++..++..+++ +++++||++|.|++++|+.|+++
T Consensus 126 ---v~~~~~~~~~~~~~~-~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 126 ---VSSNEGAACATEWNC-AFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred ---ecHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHHHHHhc
Confidence 466777888888887 89999999999999999998753
No 63
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=1.8e-22 Score=138.87 Aligned_cols=107 Identities=30% Similarity=0.509 Sum_probs=96.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..+++.+++++|++++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.....
T Consensus 57 ~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~---------- 125 (165)
T cd01864 57 WDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE---------- 125 (165)
T ss_pred EECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------
Confidence 89999999999999999999999999999999999998 89999998754 5799999999999876543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
+...++..+++.++...++++||++|.|++++|+.+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 126 VLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 367788889998887689999999999999999999875
No 64
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.89 E-value=2.3e-22 Score=139.43 Aligned_cols=112 Identities=26% Similarity=0.447 Sum_probs=95.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-C-CCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-P-GVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~-~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..+++.+++++|++++|||++++.+++.+ ..|+..+.+.. + +.|+++|+||.|+..... .
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~ 124 (170)
T cd04108 54 WDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------Y 124 (170)
T ss_pred EeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------c
Confidence 99999999999999999999999999999999999998 89998876543 3 478999999999865322 1
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
.+...++..+++.++. +++++||+++.|++++|+.+++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~-~~~e~Sa~~g~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 125 ALMEQDAIKLAAEMQA-EYWSVSALSGENVREFFFRVAALTFEL 167 (170)
T ss_pred cccHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 1245677788888887 899999999999999999999988653
No 65
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.89 E-value=2.6e-22 Score=137.64 Aligned_cols=108 Identities=32% Similarity=0.600 Sum_probs=95.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..+++.+++++|++++|||++++.+++.+ ..|...+.+.. .+.|+++|+||+|+.....
T Consensus 53 ~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~--------- 122 (164)
T smart00173 53 LDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV--------- 122 (164)
T ss_pred EECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce---------
Confidence 89999999999999999999999999999999999998 78877776543 3689999999999876443
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+....+..+++.++. +++++||+++.|++++|+.+++.+.
T Consensus 123 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 123 -VSTEEGKELARQWGC-PFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred -EcHHHHHHHHHHcCC-EEEEeecCCCCCHHHHHHHHHHHHh
Confidence 366777888888886 9999999999999999999998765
No 66
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.88 E-value=2.5e-22 Score=137.78 Aligned_cols=107 Identities=25% Similarity=0.478 Sum_probs=94.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|..+++.+++++|++++|||++++.+++.+ ..|+..+.+..++.|+++|+||+|+.+... +
T Consensus 57 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~ 125 (164)
T cd04101 57 FDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------V 125 (164)
T ss_pred EECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------C
Confidence 99999999999999999999999999999999999988 899999887766799999999999865433 3
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.......+...+++ +++++||+++.|++++|+.+++.+
T Consensus 126 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 126 TDAQAQAFAQANQL-KFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred CHHHHHHHHHHcCC-eEEEEeCCCCCChHHHHHHHHHHh
Confidence 55666677777786 899999999999999999999875
No 67
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.88 E-value=3.3e-22 Score=138.15 Aligned_cols=109 Identities=27% Similarity=0.543 Sum_probs=97.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..++..+++++|++++|||++++.+++.+ ..|+..+.+.. ++.|+++|+||.|+.+...
T Consensus 58 ~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~---------- 126 (168)
T cd01866 58 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE---------- 126 (168)
T ss_pred EECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------
Confidence 99999999999999999999999999999999999998 89999887754 6899999999999875433
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..++...++ +++++||+++.|++++|..+++.+.+
T Consensus 127 ~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 127 VSYEEGEAFAKEHGL-IFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 477788888888887 99999999999999999999988754
No 68
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.88 E-value=2e-22 Score=144.30 Aligned_cols=110 Identities=30% Similarity=0.525 Sum_probs=98.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..++..+++++|++|+|||++++.||+++ ..|+..+.+.. ...|+++|+||+|+.....
T Consensus 57 ~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~--------- 126 (211)
T cd04111 57 WDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ--------- 126 (211)
T ss_pred EeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc---------
Confidence 99999999999999999999999999999999999998 89999887654 2578899999999876443
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+..++...+++.+++ +++++||+++.|++++|+.|++.+.+.
T Consensus 127 -v~~~~~~~~~~~~~~-~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 127 -VTREEAEKLAKDLGM-KYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred -cCHHHHHHHHHHhCC-EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 477888899999996 999999999999999999999988654
No 69
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.88 E-value=2.9e-22 Score=138.36 Aligned_cols=106 Identities=32% Similarity=0.582 Sum_probs=93.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccccccCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||+|+++|..++..+++++|++++|||++++.+++.+ ..|...+.... .++|+++|+||.|+....
T Consensus 59 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------- 130 (170)
T cd04116 59 WDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ------- 130 (170)
T ss_pred EeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECccccccc-------
Confidence 99999999999999999999999999999999999998 88988776543 368999999999986322
Q ss_pred CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
+..+++.++++.++..+++++||+++.|+.++|..+++.
T Consensus 131 ----~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 131 ----VSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ----cCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 367888899999886689999999999999999999875
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.88 E-value=2.8e-22 Score=137.26 Aligned_cols=107 Identities=32% Similarity=0.612 Sum_probs=94.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..+++.+++++|++++|||++++.+++.+ ..|...+.+.. .+.|+++|+||+|+.....
T Consensus 55 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~--------- 124 (164)
T cd04145 55 LDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK--------- 124 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce---------
Confidence 89999999999999999999999999999999999998 88888887653 4789999999999876443
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+..++...+++..+. +++++||++|.|+.++|+.+++.+
T Consensus 125 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 125 -VSREEGQELARKLKI-PYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred -ecHHHHHHHHHHcCC-cEEEeeCCCCCCHHHHHHHHHHhh
Confidence 366678888888887 999999999999999999998764
No 71
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.3e-23 Score=137.58 Aligned_cols=109 Identities=28% Similarity=0.561 Sum_probs=97.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||||+|+++.++||+.|+++|+|||++=.+||+-+ ++|+.+|.+++. .+-.|+||||.|+.+.+.
T Consensus 61 wdtagqerfrsitqsyyrsahalilvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre---------- 129 (213)
T KOG0095|consen 61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE---------- 129 (213)
T ss_pred eeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------
Confidence 99999999999999999999999999999999999987 999999999985 466799999999887644
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
|+...+..+...... .|+++||+...|++.+|..++-.+..
T Consensus 130 vp~qigeefs~~qdm-yfletsakea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 130 VPQQIGEEFSEAQDM-YFLETSAKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred hhHHHHHHHHHhhhh-hhhhhcccchhhHHHHHHHHHHHHHH
Confidence 577788888888765 88999999999999999999877654
No 72
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.88 E-value=4.6e-22 Score=136.63 Aligned_cols=107 Identities=29% Similarity=0.545 Sum_probs=96.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..+++.++++++++|+|||++++.+++++ ..|+..+.+..+ +.|+++|+||+|+.....
T Consensus 57 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~---------- 125 (165)
T cd01868 57 WDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA---------- 125 (165)
T ss_pred EeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------
Confidence 89999999999999999999999999999999999998 899999887765 599999999999876443
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+..++...+++..++ +++++||+++.|++++|+.++..+
T Consensus 126 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 126 VPTEEAKAFAEKNGL-SFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHh
Confidence 367788888888886 999999999999999999998765
No 73
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.88 E-value=5.1e-22 Score=135.40 Aligned_cols=106 Identities=34% Similarity=0.605 Sum_probs=93.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..++..|++++|++++|||++++.+++++ ..|...+.+.. .+.|+++|+||+|+....
T Consensus 54 ~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~---------- 122 (162)
T cd04138 54 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART---------- 122 (162)
T ss_pred EECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce----------
Confidence 99999999999999999999999999999999999998 78888887654 479999999999987532
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+...++..+++.+++ +++++||+++.|++++|+.+++.+
T Consensus 123 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 123 -VSSRQGQDLAKSYGI-PYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred -ecHHHHHHHHHHhCC-eEEEecCCCCCCHHHHHHHHHHHh
Confidence 266778888888887 999999999999999999998754
No 74
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.88 E-value=4.7e-22 Score=136.48 Aligned_cols=104 Identities=25% Similarity=0.355 Sum_probs=87.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|++. ..+++++|++++|||++++.||+.+ ..|++.+.... +++|+++||||.|+.... ..
T Consensus 52 ~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--------~~ 117 (158)
T cd04103 52 RDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESN--------PR 117 (158)
T ss_pred EECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC--------Cc
Confidence 99999986 3567899999999999999999998 88999998765 579999999999985321 12
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
.+..+++.++++..+..+|++|||++|.||+++|..+++.
T Consensus 118 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 118 VIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred ccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 3577788888887642399999999999999999999865
No 75
>PLN03110 Rab GTPase; Provisional
Probab=99.88 E-value=4.8e-22 Score=142.85 Aligned_cols=109 Identities=26% Similarity=0.529 Sum_probs=97.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..+++.++++++++|+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 66 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~---------- 134 (216)
T PLN03110 66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS---------- 134 (216)
T ss_pred EECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------
Confidence 99999999999999999999999999999999999998 89999888765 4799999999999865443
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..++..+++ +++++||+++.|++++|+.+++.+.+
T Consensus 135 ~~~~~~~~l~~~~~~-~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 135 VAEEDGQALAEKEGL-SFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 367788888888887 99999999999999999999988753
No 76
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.88 E-value=6.3e-22 Score=135.44 Aligned_cols=107 Identities=27% Similarity=0.541 Sum_probs=96.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..+++.+++++|++++|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.....
T Consensus 54 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------- 122 (161)
T cd04113 54 WDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE---------- 122 (161)
T ss_pred EECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------
Confidence 99999999999999999999999999999999999998 89988887654 6899999999999876433
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+..+++..+++..++ +++++||+++.|++++|+.+++.+
T Consensus 123 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 123 VTFLEASRFAQENGL-LFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHhC
Confidence 477888899999996 999999999999999999998753
No 77
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.87 E-value=1.4e-21 Score=138.37 Aligned_cols=110 Identities=32% Similarity=0.602 Sum_probs=99.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
+||+|+++|..+...|++.+|+|++||+++++.||+.+ ..+...|.+.. ..+|+++||||+|+.....
T Consensus 56 lDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~--------- 125 (196)
T KOG0395|consen 56 LDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ--------- 125 (196)
T ss_pred EcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc---------
Confidence 69999999999999999999999999999999999998 88888884432 3689999999999987654
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
|..+++..++..+++ +|+|+||+.+.+++++|..|++.+..+
T Consensus 126 -V~~eeg~~la~~~~~-~f~E~Sak~~~~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 126 -VSEEEGKALARSWGC-AFIETSAKLNYNVDEVFYELVREIRLP 167 (196)
T ss_pred -cCHHHHHHHHHhcCC-cEEEeeccCCcCHHHHHHHHHHHHHhh
Confidence 599999999999999 799999999999999999999988763
No 78
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.87 E-value=2.3e-21 Score=137.58 Aligned_cols=113 Identities=20% Similarity=0.316 Sum_probs=90.8
Q ss_pred CCCCCccccccc--------ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCccccc
Q 031934 1 MNVIGQEDYNRL--------RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~l--------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~ 68 (150)
|||||+++|... ...+++++|++|+|||++++.||+.+ ..|...+.... +++|+++|+||+|+....
T Consensus 54 ~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~ 132 (198)
T cd04142 54 LDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHR 132 (198)
T ss_pred EeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECccccccc
Confidence 899998765422 23457899999999999999999998 88888877653 579999999999997643
Q ss_pred ccccCCCCCCccCHHHHHHHHH-HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcc
Q 031934 69 HYLADHPGLVPVTTAQGEELRK-QIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 125 (150)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 125 (150)
. +..+++..++. .+++ +++++||++|.||+++|+.+++.+....+.
T Consensus 133 ~----------~~~~~~~~~~~~~~~~-~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 133 F----------APRHVLSVLVRKSWKC-GYLECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred c----------ccHHHHHHHHHHhcCC-cEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 3 25566666654 4576 999999999999999999999999865443
No 79
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.4e-22 Score=131.82 Aligned_cols=109 Identities=27% Similarity=0.553 Sum_probs=100.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|||+|+.+.++||++|-+.++|||++...+++++ ..|+...+... ++..++++|||.|+...+.
T Consensus 65 wdtagqerfravtrsyyrgaagalmvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd---------- 133 (215)
T KOG0097|consen 65 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD---------- 133 (215)
T ss_pred eecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------
Confidence 99999999999999999999999999999999999998 89998887765 6788999999999987665
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
|+.+++.+++...|+ -|+++||++|.++++.|-+.++.+.+
T Consensus 134 v~yeeak~faeengl-~fle~saktg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 134 VTYEEAKEFAEENGL-MFLEASAKTGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred CcHHHHHHHHhhcCe-EEEEecccccCcHHHHHHHHHHHHHH
Confidence 588999999999997 99999999999999999999888754
No 80
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.87 E-value=1.3e-21 Score=135.34 Aligned_cols=107 Identities=28% Similarity=0.465 Sum_probs=95.1
Q ss_pred CCCCCccccc-ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031934 1 MNVIGQEDYN-RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~-~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||+|+++|. .+++.+++++|++++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.....
T Consensus 56 ~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-------- 126 (170)
T cd04115 56 WDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ-------- 126 (170)
T ss_pred EeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC--------
Confidence 8999999997 5888999999999999999999999998 89998888764 4799999999999876543
Q ss_pred CccCHHHHHHHHHHcCCcEEEEeccCC---CCCHHHHHHHHHHHH
Q 031934 78 VPVTTAQGEELRKQIGASYYIECSSKT---QQNVKAVFDAAIKVV 119 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~l~~~~ 119 (150)
+...+...+++.+++ +++++||++ +.+++++|..+++.+
T Consensus 127 --~~~~~~~~~~~~~~~-~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 127 --VPTDLAQRFADAHSM-PLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred --CCHHHHHHHHHHcCC-cEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 467788889998886 999999999 999999999998765
No 81
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.87 E-value=2.4e-21 Score=133.73 Aligned_cols=109 Identities=29% Similarity=0.526 Sum_probs=95.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..+++.++++++++++|||++++.+++.+ ..|...+.+.. .+.|+++++||.|+.....
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~--------- 123 (168)
T cd04177 54 LDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ--------- 123 (168)
T ss_pred EeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc---------
Confidence 89999999999999999999999999999999999998 88888887543 4799999999999865433
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+..++...+++.++..+++++||+++.|++++|+++++.++
T Consensus 124 -~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 124 -VSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred -cCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 36677778888888448999999999999999999998764
No 82
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.87 E-value=4.2e-21 Score=133.02 Aligned_cols=119 Identities=45% Similarity=0.816 Sum_probs=97.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||+|+++|..++..+++++|++++|||++++.+|+.+...|...+.+..++.|+++|+||+|+........ ......
T Consensus 54 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~ 133 (175)
T cd01870 54 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE 133 (175)
T ss_pred EeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCC
Confidence 899999999999999999999999999999999999884568888887667899999999999865321100 000112
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.+...++..+++.++..+++++||++|.|++++|+.+++..
T Consensus 134 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 134 PVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred CccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 35667888888888866899999999999999999998754
No 83
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.87 E-value=2.3e-21 Score=132.63 Aligned_cols=109 Identities=33% Similarity=0.648 Sum_probs=97.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..+++.+++.+|++|+|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.....
T Consensus 54 ~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~---------- 122 (164)
T smart00175 54 WDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ---------- 122 (164)
T ss_pred EECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------
Confidence 89999999999999999999999999999999999998 78999888766 6899999999999876432
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+.+..+++.+++ +++++||+++.|++++|+.+++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 123 VSREEAEAFAEEHGL-PFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred CCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 366778888888887 89999999999999999999998764
No 84
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.86 E-value=3.1e-21 Score=132.66 Aligned_cols=108 Identities=30% Similarity=0.509 Sum_probs=92.9
Q ss_pred CCCCCcccc-cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCC
Q 031934 1 MNVIGQEDY-NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~-~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||+|++++ ......+++.+|++|+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.....
T Consensus 52 ~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------- 123 (165)
T cd04146 52 LDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ------- 123 (165)
T ss_pred EECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc-------
Confidence 999999963 45667789999999999999999999998 88988888754 3799999999999865433
Q ss_pred CCccCHHHHHHHHHHcCCcEEEEeccCCC-CCHHHHHHHHHHHHh
Q 031934 77 LVPVTTAQGEELRKQIGASYYIECSSKTQ-QNVKAVFDAAIKVVI 120 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l~~~~~ 120 (150)
+..+++..+++.++. +++++||+++ .|++++|+.+++.+.
T Consensus 124 ---v~~~~~~~~~~~~~~-~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 124 ---VSTEEGEKLASELGC-LFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred ---cCHHHHHHHHHHcCC-EEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 467888889999996 9999999999 599999999998764
No 85
>PLN03108 Rab family protein; Provisional
Probab=99.86 E-value=3.4e-21 Score=137.84 Aligned_cols=109 Identities=28% Similarity=0.556 Sum_probs=97.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|..+++.+++++|++|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+...
T Consensus 60 ~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~---------- 128 (210)
T PLN03108 60 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA---------- 128 (210)
T ss_pred EeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------
Confidence 99999999999999999999999999999999999998 88988776654 5799999999999876543
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..+++..+++.+++ +++++||+++.|++++|..+++.+..
T Consensus 129 ~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 129 VSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 477888999999997 99999999999999999999988864
No 86
>PLN03118 Rab family protein; Provisional
Probab=99.86 E-value=4.9e-21 Score=137.01 Aligned_cols=112 Identities=29% Similarity=0.581 Sum_probs=96.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++|+|||++++.+|+.+...|...+.... .+.|+++|+||+|+.....
T Consensus 67 ~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~--------- 137 (211)
T PLN03118 67 WDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD--------- 137 (211)
T ss_pred EECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc---------
Confidence 89999999999999999999999999999999999998445766665443 3689999999999876443
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+..++...+++..++ +++++||+++.|++++|+.|++.+.+.+
T Consensus 138 -i~~~~~~~~~~~~~~-~~~e~SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 138 -VSREEGMALAKEHGC-LFLECSAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred -cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 366777788888887 8999999999999999999999987654
No 87
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.86 E-value=5.5e-21 Score=130.83 Aligned_cols=107 Identities=35% Similarity=0.650 Sum_probs=96.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+.... +++|+++++||+|+.....
T Consensus 55 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~---------- 123 (163)
T cd01860 55 WDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ---------- 123 (163)
T ss_pred EeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------
Confidence 89999999999999999999999999999999999998 89999888766 5799999999999875433
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+..++...+++.++. +++++||++|.|+.++|+.+++.+
T Consensus 124 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 124 VSTEEAQEYADENGL-LFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHh
Confidence 366788888888886 899999999999999999999876
No 88
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.86 E-value=6e-21 Score=139.66 Aligned_cols=110 Identities=28% Similarity=0.437 Sum_probs=93.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh----------CCCCCEEEEeeCCCccccccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY----------SPGVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~----------~~~~piilv~nK~D~~~~~~~ 70 (150)
|||+|+++|..+++.++.++|++|+|||++++.||+.+ ..|...+... ..++|+|+|+||+|+.....
T Consensus 53 ~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~- 130 (247)
T cd04143 53 LDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE- 130 (247)
T ss_pred EECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc-
Confidence 99999999999999999999999999999999999998 8888888643 24799999999999975332
Q ss_pred ccCCCCCCccCHHHHHHHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 71 LADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+..+++.+++... ++ .++++||+++.|++++|+.|+.....+
T Consensus 131 ---------v~~~ei~~~~~~~~~~-~~~evSAktg~gI~elf~~L~~~~~~p 173 (247)
T cd04143 131 ---------VQRDEVEQLVGGDENC-AYFEVSAKKNSNLDEMFRALFSLAKLP 173 (247)
T ss_pred ---------cCHHHHHHHHHhcCCC-EEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 3667777776543 44 899999999999999999999977443
No 89
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.86 E-value=5.7e-21 Score=130.52 Aligned_cols=106 Identities=34% Similarity=0.599 Sum_probs=94.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..+++.+++++|++++|||++++.+|+.+ ..|+..+....+ +.|+++|+||+|+.....
T Consensus 54 ~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~---------- 122 (161)
T cd01861 54 WDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ---------- 122 (161)
T ss_pred EECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------
Confidence 99999999999999999999999999999999999998 899998876553 699999999999864433
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
+..++...+++..++ +++++||+++.|++++|+.+++.
T Consensus 123 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 123 VSTEEGEKKAKELNA-MFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred cCHHHHHHHHHHhCC-EEEEEeCCCCCCHHHHHHHHHHh
Confidence 366778888888886 89999999999999999999875
No 90
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=5e-21 Score=132.57 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=92.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|++++..++..+++++|++++|||++++.+++.+ ..|+..+... .++|+++|+||+|+.+... +
T Consensus 59 ~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~ 126 (169)
T cd01892 59 REVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQ----------R 126 (169)
T ss_pred EecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccccc----------c
Confidence 89999999999999999999999999999999999987 7888766432 4799999999999865432 1
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
...+...+++.+++..++++||+++.|+.++|+.+++.+..+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~~~ 168 (169)
T cd01892 127 YEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQYP 168 (169)
T ss_pred cccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhhCC
Confidence 334556777888875579999999999999999999988754
No 91
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.85 E-value=1.5e-20 Score=128.16 Aligned_cols=107 Identities=35% Similarity=0.618 Sum_probs=95.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|++.|..+++.+++++|++++|||++++.+++.+ ..|+..+....+ ++|+++|+||+|+.....
T Consensus 54 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~---------- 122 (162)
T cd04123 54 WDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV---------- 122 (162)
T ss_pred EECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------
Confidence 89999999999999999999999999999999999998 889988887664 699999999999875433
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+..+....+++..+. +++++||+++.|++++++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~-~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 123 VSKSEAEEYAKSVGA-KHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 366777788888887 899999999999999999998865
No 92
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.85 E-value=1.7e-20 Score=129.41 Aligned_cols=111 Identities=29% Similarity=0.529 Sum_probs=96.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-----CCCEEEEeeCCCcccccccccCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-----GVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||||++.|..++..+++++|++|+|||++++.+++.+ ..|...+..... ++|+++|+||+|+.....
T Consensus 54 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------ 126 (172)
T cd01862 54 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ------ 126 (172)
T ss_pred EeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc------
Confidence 89999999999999999999999999999999999987 788877665443 799999999999975332
Q ss_pred CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+..++...+++..+..+++++||++|.|++++|+.+++.+++.
T Consensus 127 ----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 127 ----VSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred ----cCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 2667778888888855999999999999999999999988765
No 93
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.85 E-value=7.8e-21 Score=137.01 Aligned_cols=107 Identities=23% Similarity=0.391 Sum_probs=91.7
Q ss_pred CCCCCccccccccccccc-CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYR-GADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~-~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||+|++. .+...+++ ++|++++|||++++.+|+.+ ..|+..+.+.. .+.|+|+|+||+|+.....
T Consensus 55 ~Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~-------- 123 (221)
T cd04148 55 IDHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE-------- 123 (221)
T ss_pred EeCCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce--------
Confidence 89999993 34456677 99999999999999999998 88988887754 4799999999999876443
Q ss_pred CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+..++...++..+++ +++++||+++.||+++|+.+++.+..
T Consensus 124 --v~~~~~~~~a~~~~~-~~~e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 124 --VSVQEGRACAVVFDC-KFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred --ecHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 466777888888887 89999999999999999999998864
No 94
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.85 E-value=1.9e-20 Score=128.01 Aligned_cols=105 Identities=30% Similarity=0.591 Sum_probs=93.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..++..+++++|++++|||++++.+++.+ ..|+..+.+.. .+.|+++|+||+|+....
T Consensus 54 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~---------- 122 (161)
T cd01863 54 WDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE---------- 122 (161)
T ss_pred EECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc----------
Confidence 89999999999999999999999999999999999998 88998888765 479999999999987433
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
+..++...+++..++ +++++||++|.|++++++.+++.
T Consensus 123 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 123 -VTREEGLKFARKHNM-LFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred -cCHHHHHHHHHHcCC-EEEEEecCCCCCHHHHHHHHHHh
Confidence 266778888888887 89999999999999999999875
No 95
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.84 E-value=5.9e-21 Score=132.16 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=82.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..+++.++++||++|+|||++++.+++.+ ..|+..+... .+++|++||+||+|+...
T Consensus 58 ~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----------- 125 (168)
T cd04149 58 WDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEA-RQELHRIINDREMRDALLLVFANKQDLPDA----------- 125 (168)
T ss_pred EECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHH-HHHHHHHhcCHhhcCCcEEEEEECcCCccC-----------
Confidence 99999999999999999999999999999999999988 5665555432 257999999999998642
Q ss_pred ccCHHHHHHHHHH-----cCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQ-----IGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 79 ~v~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
+..+++..++.. ..+ +++++||++|.|+.++|+.|.+
T Consensus 126 -~~~~~i~~~~~~~~~~~~~~-~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 126 -MKPHEIQEKLGLTRIRDRNW-YVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred -CCHHHHHHHcCCCccCCCcE-EEEEeeCCCCCChHHHHHHHhc
Confidence 144555554421 223 6899999999999999999864
No 96
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.84 E-value=1.7e-21 Score=134.29 Aligned_cols=108 Identities=13% Similarity=0.211 Sum_probs=87.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|+++|..+++.++++||++|+|||++++.++..+ ..|+..+....+++|+++|+||.|+...... ..+
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~-------~~i 120 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARSV-------QEI 120 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCCH-------HHH
Confidence 99999999999999999999999999999999999988 7888877655578999999999998654321 000
Q ss_pred C-HHHHHHHHHHcCCcEEEEeccCC------CCCHHHHHHHHHH
Q 031934 81 T-TAQGEELRKQIGASYYIECSSKT------QQNVKAVFDAAIK 117 (150)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~l~~ 117 (150)
. ...+..+++..++ .++++||++ ++||.++|+.++.
T Consensus 121 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 121 HKELELEPIARGRRW-ILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred HHHhCChhhcCCCce-EEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 0 0123456666676 889988888 9999999998874
No 97
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.84 E-value=2.3e-20 Score=130.04 Aligned_cols=125 Identities=30% Similarity=0.507 Sum_probs=101.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..++..++..++++++|||+++..+++.+ ..|...+.+.. .+.|+++|+||+|+...+.
T Consensus 54 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--------- 123 (180)
T cd04137 54 VDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ--------- 123 (180)
T ss_pred EECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc---------
Confidence 89999999999999999999999999999999999998 77766666543 4689999999999875432
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhhccCCCceee
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN 139 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~c~~~ 139 (150)
+...+...+++.++. +++++||+++.|+.++|..+.+.+...+.... ...+..|.+|
T Consensus 124 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~ 180 (180)
T cd04137 124 -VSTEEGKELAESWGA-AFLESSARENENVEEAFELLIEEIEKVENPLD--PGQKKKCSIM 180 (180)
T ss_pred -cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHhcCCCC--CCCCCCceeC
Confidence 255566777888886 99999999999999999999999876654332 2245567665
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.84 E-value=1.2e-20 Score=132.23 Aligned_cols=105 Identities=11% Similarity=0.165 Sum_probs=83.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
||||||++|..+++.|++++|++|+|||++++.++..+ ..++..+... .++.|++||+||.|+....
T Consensus 66 ~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~-~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~---------- 134 (181)
T PLN00223 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAM---------- 134 (181)
T ss_pred EECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHH-HHHHHHHhcCHhhCCCCEEEEEECCCCCCCC----------
Confidence 99999999999999999999999999999999999988 5555554322 2579999999999986532
Q ss_pred ccCHHHHHHHHHHcCCc-------EEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 79 PVTTAQGEELRKQIGAS-------YYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~-------~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
..++... ..++. .++++||++|+||.++|+.|++.+..
T Consensus 135 --~~~~~~~---~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 135 --NAAEITD---KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred --CHHHHHH---HhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 3233332 22321 35689999999999999999988764
No 99
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.84 E-value=3.6e-20 Score=127.71 Aligned_cols=113 Identities=27% Similarity=0.404 Sum_probs=90.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||++++...+..+++++|++++|||++++.+++.+...|.+.+....++.|+++|+||+|+.+.... ..
T Consensus 52 ~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~ 123 (166)
T cd01893 52 VDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AG 123 (166)
T ss_pred EeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hH
Confidence 9999999988877888899999999999999999998734788888876678999999999999765421 00
Q ss_pred CHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 81 TTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
.......++..++ ..+++++||+++.|++++|+.+.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 124 LEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 1233334444443 2389999999999999999999988765
No 100
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.84 E-value=4.4e-20 Score=127.19 Aligned_cols=117 Identities=54% Similarity=0.964 Sum_probs=97.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC-CCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD-HPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~ 79 (150)
|||||+++|..+++.+++.+|++++|||++++.++......|+..+....++.|+++|+||+|+......... ......
T Consensus 53 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 132 (171)
T cd00157 53 WDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEP 132 (171)
T ss_pred EeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCc
Confidence 8999999999999999999999999999999999998867788888887778999999999998765431000 000122
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
+...+...++..+++.+++++||+++.|++++|+.+++
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 133 ITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred cCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 45677888888898779999999999999999999875
No 101
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.84 E-value=5e-20 Score=125.89 Aligned_cols=108 Identities=31% Similarity=0.548 Sum_probs=94.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..++..+++.++++++|||++++.+++.. ..|...+.... .++|+++|+||+|+.....
T Consensus 53 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~--------- 122 (164)
T cd04139 53 LDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ--------- 122 (164)
T ss_pred EECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc---------
Confidence 89999999999999999999999999999999999998 78887777763 4799999999999876322
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+.......+++.+++ +++++||+++.|++++|+.+++.+.
T Consensus 123 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 123 -VSSEEAANLARQWGV-PYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred -cCHHHHHHHHHHhCC-eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 256677788888887 9999999999999999999998775
No 102
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.84 E-value=2.7e-20 Score=128.74 Aligned_cols=110 Identities=13% Similarity=0.163 Sum_probs=90.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||++++..++..+++++|++++|||++++.++.++ ..|+..+.... .+.|+++|+||.|+...
T Consensus 48 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----------- 115 (169)
T cd04158 48 WDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA----------- 115 (169)
T ss_pred EECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC-----------
Confidence 89999999999999999999999999999999999998 77777776432 46899999999998642
Q ss_pred ccCHHHHHHHHHHcC-----CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 79 PVTTAQGEELRKQIG-----ASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+..+++..+++..+ ...++++||++|.||.++|+.|++.+.+.+
T Consensus 116 -~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 116 -LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred -CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcc
Confidence 25566666654322 126789999999999999999998887654
No 103
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.83 E-value=2.5e-20 Score=130.62 Aligned_cols=110 Identities=20% Similarity=0.255 Sum_probs=87.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..+++.+++++|++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+....
T Consensus 57 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~---------- 125 (183)
T cd04152 57 WDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNAL---------- 125 (183)
T ss_pred EECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCccccC----------
Confidence 99999999999999999999999999999999999887 77877766543 469999999999986431
Q ss_pred ccCHHHHHHHHHH--c---CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 79 PVTTAQGEELRKQ--I---GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 79 ~v~~~~~~~~~~~--~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
...+...+... . ...+++++||+++.|++++|+.|++.+.+..
T Consensus 126 --~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~ 173 (183)
T cd04152 126 --SVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRR 173 (183)
T ss_pred --CHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHH
Confidence 33334433321 1 1126889999999999999999999987543
No 104
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=8e-20 Score=129.54 Aligned_cols=112 Identities=25% Similarity=0.403 Sum_probs=91.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+.... .++|+++|+||.|+......
T Consensus 52 ~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~-------- 122 (198)
T cd04147 52 LDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEERQ-------- 122 (198)
T ss_pred EECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEcccccccccc--------
Confidence 89999999999999999999999999999999999998 88988877654 36999999999998653211
Q ss_pred ccCHHHHHHHHH-HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 79 PVTTAQGEELRK-QIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 79 ~v~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+.......... .++. +++++||++|.|++++|+.+++.+...+
T Consensus 123 -v~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 166 (198)
T cd04147 123 -VPAKDALSTVELDWNC-GFVETSAKDNENVLEVFKELLRQANLPY 166 (198)
T ss_pred -ccHHHHHHHHHhhcCC-cEEEecCCCCCCHHHHHHHHHHHhhccc
Confidence 23444443333 4454 8999999999999999999999876443
No 105
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.82 E-value=3e-20 Score=127.47 Aligned_cols=103 Identities=12% Similarity=0.156 Sum_probs=79.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..+++.++++||++|+|||++++.+++.+ ..|+..+... ..+.|+++++||+|+....
T Consensus 49 ~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---------- 117 (159)
T cd04150 49 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEA-REELQRMLNEDELRDAVLLVFANKQDLPNAM---------- 117 (159)
T ss_pred EECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHhcHHhcCCCEEEEEECCCCCCCC----------
Confidence 99999999999999999999999999999999999998 5555554332 2468999999999986431
Q ss_pred ccCHHHH-HHHH----HHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 79 PVTTAQG-EELR----KQIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 79 ~v~~~~~-~~~~----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
...+. ..+. ...++ .++++||++|.|++++|+.|.+
T Consensus 118 --~~~~i~~~~~~~~~~~~~~-~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 118 --SAAEVTDKLGLHSLRNRNW-YIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred --CHHHHHHHhCccccCCCCE-EEEEeeCCCCCCHHHHHHHHhc
Confidence 22222 2221 11122 5789999999999999998864
No 106
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.82 E-value=6.8e-20 Score=127.55 Aligned_cols=106 Identities=11% Similarity=0.116 Sum_probs=82.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..|+++||++|+|||++++.+++.. ..|+..+... .+++|+++|+||.|+.+..
T Consensus 62 ~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---------- 130 (175)
T smart00177 62 WDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEA-REELHRMLNEDELRDAVILVFANKQDLPDAM---------- 130 (175)
T ss_pred EECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHhhCHhhcCCcEEEEEeCcCcccCC----------
Confidence 99999999999999999999999999999999999998 5665555432 2579999999999986532
Q ss_pred ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
...+..... +...+ .++++||++|.|+.++|+.|.+.+.
T Consensus 131 --~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 131 --KAAEITEKLGLHSIRDRNW-YIQPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred --CHHHHHHHhCccccCCCcE-EEEEeeCCCCCCHHHHHHHHHHHhc
Confidence 222222221 11222 5778999999999999999987653
No 107
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=1.5e-19 Score=124.41 Aligned_cols=107 Identities=28% Similarity=0.569 Sum_probs=92.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||+|+++|...+..+++.+|++++|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.....
T Consensus 61 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~---------- 129 (169)
T cd04114 61 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE---------- 129 (169)
T ss_pred EECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------
Confidence 89999999999989999999999999999999999988 899988877653 699999999999865433
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+.......+.+.... +++++||++|.|+.++|+.+++.+
T Consensus 130 i~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 130 VSQQRAEEFSDAQDM-YYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred cCHHHHHHHHHHcCC-eEEEeeCCCCCCHHHHHHHHHHHh
Confidence 355666677777665 899999999999999999999765
No 108
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.82 E-value=8.6e-21 Score=129.53 Aligned_cols=110 Identities=30% Similarity=0.462 Sum_probs=103.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|||+|..+...||++|.+.++||+.+|..||+.+ ..|.+.+....+++|.++|-||+|+.++.. +
T Consensus 74 WdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~ 142 (246)
T KOG4252|consen 74 WDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------M 142 (246)
T ss_pred HHhccchhHHHHHHHHhccccceEEEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------c
Confidence 99999999999999999999999999999999999998 899999999889999999999999998765 4
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
...++..+++..++ .++.+|++...|+..+|..|+..+.++
T Consensus 143 ~~~evE~lak~l~~-RlyRtSvked~NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 143 DKGEVEGLAKKLHK-RLYRTSVKEDFNVMHVFAYLAEKLTQQ 183 (246)
T ss_pred chHHHHHHHHHhhh-hhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 88899999999997 999999999999999999999888654
No 109
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.81 E-value=1.2e-19 Score=127.16 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=83.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..+++.+++++|++|+|||++++.+++.. ..++..+... ..+.|+++|+||.|+....
T Consensus 66 ~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---------- 134 (182)
T PTZ00133 66 WDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDA-REELERMLSEDELRDAVLLVFANKQDLPNAM---------- 134 (182)
T ss_pred EECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC----------
Confidence 99999999999999999999999999999999999988 5555555332 2468999999999986432
Q ss_pred ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
...+..... +..++ .++++||++|.|+.++|+.|.+.+...
T Consensus 135 --~~~~i~~~l~~~~~~~~~~-~~~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 135 --STTEVTEKLGLHSVRQRNW-YIQGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred --CHHHHHHHhCCCcccCCcE-EEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 222222211 11122 567999999999999999999887654
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.81 E-value=1.3e-19 Score=125.60 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=83.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||++.+..++..+++++|++++|||++++.++... ..|+..+... ..+.|+++|+||+|+.+..
T Consensus 63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---------- 131 (173)
T cd04154 63 WDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGAL---------- 131 (173)
T ss_pred EECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccCC----------
Confidence 89999999999999999999999999999999999887 6777666432 2579999999999986532
Q ss_pred ccCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 79 PVTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 79 ~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
..+++..+.+ ..++ +++++||++|.|++++|+.++.
T Consensus 132 --~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 132 --SEEEIREALELDKISSHHW-RIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred --CHHHHHHHhCccccCCCce-EEEeccCCCCcCHHHHHHHHhc
Confidence 3344444442 2344 8999999999999999998863
No 111
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.80 E-value=4.2e-19 Score=120.74 Aligned_cols=107 Identities=32% Similarity=0.636 Sum_probs=94.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
||++|++++..++..+++++|++++|||++++.+++++ ..|...+..... +.|+++|+||+|+.....
T Consensus 52 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------- 121 (160)
T cd00876 52 LDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ--------- 121 (160)
T ss_pred EECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce---------
Confidence 89999999999999999999999999999999999998 777777776554 799999999999876433
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+..+.+..++..++. +++++||+++.|+.++|+.|++.+
T Consensus 122 -~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 122 -VSKEEGKALAKEWGC-PFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred -ecHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHhhC
Confidence 367788888888886 999999999999999999998753
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.80 E-value=2e-19 Score=122.91 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=80.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccccccccCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||||+++|..++..+++++|++|+|+|++++.++..+ ..|+..+.+.. .++|+++|+||+|+....
T Consensus 50 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-------- 120 (162)
T cd04157 50 FDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL-------- 120 (162)
T ss_pred EECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC--------
Confidence 89999999999999999999999999999999999887 67777665431 479999999999986532
Q ss_pred CCccCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 77 LVPVTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 77 ~~~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
...+...... ...+ +++++||++|.|++++|+.|.+
T Consensus 121 ----~~~~~~~~l~~~~~~~~~~-~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 121 ----TAVKITQLLGLENIKDKPW-HIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred ----CHHHHHHHhCCccccCceE-EEEEeeCCCCCchHHHHHHHhc
Confidence 2222222111 1122 5899999999999999999864
No 113
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.80 E-value=9.6e-19 Score=125.43 Aligned_cols=110 Identities=24% Similarity=0.453 Sum_probs=94.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|+++|..++..++++++++++|||+++..++..+ ..|+..+....++.|+++++||+|+.....
T Consensus 63 ~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~----------- 130 (215)
T PTZ00132 63 WDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQV----------- 130 (215)
T ss_pred EECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCccccC-----------
Confidence 89999999999999999999999999999999999998 899999887777899999999999864321
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~ 124 (150)
..+ ...+++..++ .++++||+++.|++++|..+++.+...+.
T Consensus 131 ~~~-~~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 131 KAR-QITFHRKKNL-QYYDISAKSNYNFEKPFLWLARRLTNDPN 172 (215)
T ss_pred CHH-HHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHhhccc
Confidence 223 3456777776 89999999999999999999999876543
No 114
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.80 E-value=6.6e-19 Score=119.06 Aligned_cols=104 Identities=35% Similarity=0.733 Sum_probs=92.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
||+||++.+..++..+++++|++++|+|++++.+++.+ ..|+..+.... .+.|+++++||+|+.....
T Consensus 54 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------- 122 (159)
T cd00154 54 WDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ---------- 122 (159)
T ss_pred EecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------
Confidence 89999999999999999999999999999999999998 88999888876 5799999999999863322
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 116 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 116 (150)
+..++...++..++. +++++||+++.|++++|+.++
T Consensus 123 ~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 123 VSTEEAQQFAKENGL-LFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ccHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHh
Confidence 367888888888887 999999999999999999886
No 115
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.79 E-value=4.8e-19 Score=123.08 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=82.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|..++..+++++|++|+|||+++..+++.. ..|..... .++|+++|+||+|+.+..
T Consensus 72 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~------------ 135 (179)
T cd01890 72 IDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD------------ 135 (179)
T ss_pred EECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC------------
Confidence 89999999999999999999999999999998777765 55543332 368999999999986421
Q ss_pred CHHHHHHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 81 TTAQGEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
.......+++.+++. +++++||++|.|++++|+.+.+.+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 136 PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 223344556666652 4899999999999999999998764
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=8.2e-19 Score=121.92 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=80.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|...++.+++++|++++|+|++++.++... ..++..+.+.. .+.|+++++||+|+....
T Consensus 64 ~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~-~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~---------- 132 (174)
T cd04153 64 WDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLT-KEELYKMLAHEDLRKAVLLVLANKQDLKGAM---------- 132 (174)
T ss_pred EECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECCCCCCCC----------
Confidence 89999999999999999999999999999999999887 55555554332 469999999999986531
Q ss_pred ccCHHHHH-HHH----HHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 79 PVTTAQGE-ELR----KQIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 79 ~v~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
..++.. .+. +..++ +++++||+++.|++++|+.|++
T Consensus 133 --~~~~i~~~l~~~~~~~~~~-~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 133 --TPAEISESLGLTSIRDHTW-HIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred --CHHHHHHHhCcccccCCce-EEEecccCCCCCHHHHHHHHhc
Confidence 222222 221 23344 7899999999999999999864
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.77 E-value=3.6e-19 Score=121.60 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=78.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..+++.+++++|++|+|+|++++.++......|...+.... .+.|+++|+||+|+....
T Consensus 48 ~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~----------- 116 (158)
T cd04151 48 WDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL----------- 116 (158)
T ss_pred EECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-----------
Confidence 89999999999999999999999999999999888776333433333222 479999999999986432
Q ss_pred cCHHHHH-HHH----HHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 80 VTTAQGE-ELR----KQIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 80 v~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
...+.. .+. ...+. +++++||+++.|+.++|+.|++
T Consensus 117 -~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 117 -SEAEISEKLGLSELKDRTW-SIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred -CHHHHHHHhCccccCCCcE-EEEEeeccCCCCHHHHHHHHhc
Confidence 112221 111 11223 6999999999999999999875
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.77 E-value=1.5e-18 Score=118.46 Aligned_cols=103 Identities=22% Similarity=0.267 Sum_probs=80.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|++++..++..+++++|++|+|+|++++.++..+ ..|+..+.+.. .+.|+++|+||+|+....
T Consensus 49 ~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---------- 117 (160)
T cd04156 49 WDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLPGAL---------- 117 (160)
T ss_pred EECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECcccccCc----------
Confidence 89999999999999999999999999999999999887 66666654432 479999999999986421
Q ss_pred ccCHHHHHH------HHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 79 PVTTAQGEE------LRKQIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 79 ~v~~~~~~~------~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
...+... ++...++ +++++||++|.|++++|+.|++
T Consensus 118 --~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 118 --TAEEITRRFKLKKYCSDRDW-YVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred --CHHHHHHHcCCcccCCCCcE-EEEecccccCCChHHHHHHHhc
Confidence 2222221 2222233 7899999999999999999864
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.77 E-value=2.5e-18 Score=118.12 Aligned_cols=104 Identities=16% Similarity=0.265 Sum_probs=83.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..++..+++++|++++|+|++++.++... ..|+..+.+.. .+.|+++++||+|+....
T Consensus 55 ~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~---------- 123 (167)
T cd04160 55 WDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDAL---------- 123 (167)
T ss_pred EECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccCC----------
Confidence 89999999999999999999999999999999999887 67776665532 479999999999986532
Q ss_pred ccCHHHHHHHHHHc------CCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQI------GASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 79 ~v~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
...+...+.... ...+++++||++|.|++++++.|++
T Consensus 124 --~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 124 --SVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred --CHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 334444443321 1137999999999999999999864
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.76 E-value=3.1e-18 Score=116.79 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=82.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|..+++.+++++|++++|||++++.++... ..|+..+.... .+.|+++|+||+|+....
T Consensus 48 ~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---------- 116 (158)
T cd00878 48 WDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL---------- 116 (158)
T ss_pred EECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc----------
Confidence 99999999999999999999999999999999999988 67766665543 479999999999987643
Q ss_pred ccCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 79 PVTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 79 ~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
...+...... ...+ +++++||++|.|++++|+.|..
T Consensus 117 --~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 117 --SVSELIEKLGLEKILGRRW-HIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred --CHHHHHHhhChhhccCCcE-EEEEeeCCCCCCHHHHHHHHhh
Confidence 2223322222 2233 8999999999999999999875
No 121
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.76 E-value=1.9e-18 Score=123.00 Aligned_cols=98 Identities=22% Similarity=0.308 Sum_probs=78.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--------------------CCCCEEEEee
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--------------------PGVPVVLVGT 60 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--------------------~~~piilv~n 60 (150)
|||+|+++|..+++.+++++|++|+|||++++.||+.+ ..|+.++.... +++|++||||
T Consensus 59 wDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGn 137 (202)
T cd04102 59 WDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGT 137 (202)
T ss_pred EecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEE
Confidence 99999999999999999999999999999999999998 89999987531 3699999999
Q ss_pred CCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 031934 61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 106 (150)
Q Consensus 61 K~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 106 (150)
|.|+.+.... ...........++.+.+. +.+++++++..
T Consensus 138 K~Dl~~~r~~------~~~~~~~~~~~ia~~~~~-~~i~~~c~~~~ 176 (202)
T cd04102 138 KLDQIPEKES------SGNLVLTARGFVAEQGNA-EEINLNCTNGR 176 (202)
T ss_pred Cccchhhccc------chHHHhhHhhhHHHhcCC-ceEEEecCCcc
Confidence 9999765321 001122335567888887 88888888653
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.75 E-value=5.2e-18 Score=119.14 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=85.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||++++..++..+++++|++++|+|+++..++... ..|+..+.+.. .+.|+++++||+|+...
T Consensus 68 ~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~----------- 135 (190)
T cd00879 68 FDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPGA----------- 135 (190)
T ss_pred EECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCCC-----------
Confidence 89999999999999999999999999999999999887 56666665432 46999999999998642
Q ss_pred ccCHHHHHHHHHHc---------------CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQI---------------GASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+..++....+..+ ...+++++||+++.|++++|+.|++.+
T Consensus 136 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 136 -VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred -cCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 2455666555431 112689999999999999999998753
No 123
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.75 E-value=5.8e-18 Score=116.94 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=83.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||++++..+++.|++++|++|+|||++++.+++.+ ..|+..+.+.. .++|+++|+||.|+....... .
T Consensus 48 ~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~------~ 120 (167)
T cd04161 48 FDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGA------D 120 (167)
T ss_pred EECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHH------H
Confidence 89999999999999999999999999999999999998 78888776543 479999999999987643210 0
Q ss_pred ccCHHHHHHHHHHcCC-cEEEEeccCCC------CCHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGA-SYYIECSSKTQ------QNVKAVFDAAIK 117 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~-~~~~~~Sa~~~------~~i~~~~~~l~~ 117 (150)
-+....+..+++..+. .+++++||++| .|+.+.|++|+.
T Consensus 121 i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 121 VIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 0000111233333332 26788999998 899999999864
No 124
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.74 E-value=2.7e-17 Score=109.79 Aligned_cols=114 Identities=20% Similarity=0.267 Sum_probs=100.2
Q ss_pred CCCCCcccc-cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031934 1 MNVIGQEDY-NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~-~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||+|...+ ..+.++|++-+|+|++||+..|++||+.+ +-+...|.+.. .++||++++||+|+.+...
T Consensus 65 yDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~-------- 135 (198)
T KOG3883|consen 65 YDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE-------- 135 (198)
T ss_pred eecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh--------
Confidence 699998877 66889999999999999999999999998 77777777654 3799999999999876544
Q ss_pred CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcch
Q 031934 78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 126 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 126 (150)
+....++.||+...+ ..++++|.+..++.+.|..++..+..+..+.
T Consensus 136 --vd~d~A~~Wa~rEkv-kl~eVta~dR~sL~epf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 136 --VDMDVAQIWAKREKV-KLWEVTAMDRPSLYEPFTYLASRLHQPQSKS 181 (198)
T ss_pred --cCHHHHHHHHhhhhe-eEEEEEeccchhhhhHHHHHHHhccCCcccc
Confidence 588899999999997 9999999999999999999999998776544
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=3.6e-17 Score=114.72 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=82.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|++++..++..|+.++|++|+|+|++++.++... ..++..+.+. ..+.|+++|+||.|+...
T Consensus 66 ~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~----------- 133 (184)
T smart00178 66 FDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPYA----------- 133 (184)
T ss_pred EECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCC-----------
Confidence 89999999999999999999999999999999999887 6666555432 257999999999998643
Q ss_pred ccCHHHHHHHHHH-----------cCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQ-----------IGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 79 ~v~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
+..+++.....- .+...++++||+++.|++++++.|...
T Consensus 134 -~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 134 -ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred -CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 133444333211 122358999999999999999999765
No 126
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.71 E-value=1.7e-17 Score=111.33 Aligned_cols=97 Identities=28% Similarity=0.281 Sum_probs=76.1
Q ss_pred CCCCCc-----ccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031934 1 MNVIGQ-----EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~-----e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||||+ +.|..+.+ ++++||++|+|||++++.++.. ..|.... ..|+++|+||+|+.+..
T Consensus 40 iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~--~~~~~~~-----~~p~ilv~NK~Dl~~~~------- 104 (142)
T TIGR02528 40 IDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP--PGFASIF-----VKPVIGLVTKIDLAEAD------- 104 (142)
T ss_pred ecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC--hhHHHhc-----cCCeEEEEEeeccCCcc-------
Confidence 899998 34555554 5899999999999999999865 3554432 24999999999986532
Q ss_pred CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031934 76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 116 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 116 (150)
+..+....+++..+..+++++||+++.|++++|+.++
T Consensus 105 ----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 105 ----VDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ----cCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 1556667777777765899999999999999998874
No 127
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.70 E-value=3.5e-17 Score=112.42 Aligned_cols=112 Identities=23% Similarity=0.410 Sum_probs=98.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--C---CCCEEEEeeCCCcccccccccCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--P---GVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~---~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
||++|||+|..+.+.||++|++.++|||+++.-+|+.. ..|..++.... + .+|+++.+||||....-..
T Consensus 80 wdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~----- 153 (229)
T KOG4423|consen 80 WDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN----- 153 (229)
T ss_pred hcchhhhhhcceEEEEecCCcceEEEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhhh-----
Confidence 99999999999999999999999999999999999999 89999988665 2 4788999999997654221
Q ss_pred CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
-....+.++++..++..++++|+|.+.++.++-..+++.++-+
T Consensus 154 ----~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 154 ----EATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVN 196 (229)
T ss_pred ----hhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhh
Confidence 1357788899999999999999999999999999999988744
No 128
>PLN00023 GTP-binding protein; Provisional
Probab=99.70 E-value=5.9e-17 Score=121.59 Aligned_cols=91 Identities=21% Similarity=0.345 Sum_probs=74.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-------------CCCCEEEEeeCCCcccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-------------PGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~piilv~nK~D~~~~ 67 (150)
|||+|+++|..+++.|+++++++|+|||++++.+|+.+ ..|+..+.... .++|++|||||+|+...
T Consensus 88 WDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 88 WDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred EECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 99999999999999999999999999999999999998 89999998753 25899999999999653
Q ss_pred cccccCCCCCCccCHHHHHHHHHHcCCcE
Q 031934 68 KHYLADHPGLVPVTTAQGEELRKQIGASY 96 (150)
Q Consensus 68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (150)
... -....+..+++.++++..++.+
T Consensus 167 ~~~----r~~s~~~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 167 EGT----RGSSGNLVDAARQWVEKQGLLP 191 (334)
T ss_pred ccc----cccccccHHHHHHHHHHcCCCc
Confidence 210 0000136789999999988644
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.69 E-value=1.9e-16 Score=108.82 Aligned_cols=106 Identities=19% Similarity=0.194 Sum_probs=75.5
Q ss_pred CCCCCccccccccc---------ccccCCcEEEEEEeCCChhhH--HHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031934 1 MNVIGQEDYNRLRP---------LSYRGADVFVLAFSLVSRASY--ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~e~~~~l~~---------~~~~~ad~~i~v~d~~~~~s~--~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~ 69 (150)
|||||+.+.....+ .....+|++|+|+|+++..++ +.. ..|+..+....++.|+++|+||.|+.....
T Consensus 52 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~ 130 (168)
T cd01897 52 IDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED 130 (168)
T ss_pred EECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh
Confidence 89999854211111 011236899999999987653 554 578888876556899999999999875432
Q ss_pred cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 70 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
......+....+. +++++||+++.|++++|+.+.+.++
T Consensus 131 ------------~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 131 ------------LSEIEEEEELEGE-EVLKISTLTEEGVDEVKNKACELLL 168 (168)
T ss_pred ------------HHHHHHhhhhccC-ceEEEEecccCCHHHHHHHHHHHhC
Confidence 1124445554454 8999999999999999999988763
No 130
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.69 E-value=3.6e-16 Score=108.97 Aligned_cols=105 Identities=19% Similarity=0.287 Sum_probs=83.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
||.+|++.++.+|+.|++++|++|+|+|++++..+... ...+..+... . .++|+++++||.|+.+..
T Consensus 63 ~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~-~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~---------- 131 (175)
T PF00025_consen 63 WDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEA-KEELKELLNDPELKDIPILILANKQDLPDAM---------- 131 (175)
T ss_dssp EEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHH-HHHHHHHHTSGGGTTSEEEEEEESTTSTTSS----------
T ss_pred EeccccccccccceeeccccceeEEEEecccceeeccc-ccchhhhcchhhcccceEEEEeccccccCcc----------
Confidence 89999999999999999999999999999999988887 4444454432 2 479999999999987642
Q ss_pred ccCHHHHHHHHH------HcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 79 PVTTAQGEELRK------QIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
...++..... ...+ .++.+||.+|.|+.+.+++|.+++
T Consensus 132 --~~~~i~~~l~l~~l~~~~~~-~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 132 --SEEEIKEYLGLEKLKNKRPW-SVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp --THHHHHHHTTGGGTTSSSCE-EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred --hhhHHHhhhhhhhcccCCce-EEEeeeccCCcCHHHHHHHHHhcC
Confidence 3344443332 2233 688999999999999999999875
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.68 E-value=2.5e-16 Score=108.39 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=79.8
Q ss_pred CCCCCcc----ccccccccccc---CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccc
Q 031934 1 MNVIGQE----DYNRLRPLSYR---GADVFVLAFSLVSR-ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~e----~~~~l~~~~~~---~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~ 69 (150)
|||||+. .+..+...+++ .+|++++|+|++++ .+++.+ ..|.+.+.... .+.|+++|+||+|+.....
T Consensus 53 ~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 53 ADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred EecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh
Confidence 8999974 22234444444 59999999999999 788887 88888887654 3689999999999865432
Q ss_pred cccCCCCCCccCHHHHHHHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 70 YLADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
..+....+.... +. +++++||+++.|+.++|+.+.+.
T Consensus 132 -----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 132 -----------LFELLKELLKELWGK-PVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred -----------hHHHHHHHHhhCCCC-CEEEEecCCCCCHHHHHHHHHhh
Confidence 334444555553 54 89999999999999999998865
No 132
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.5e-17 Score=112.12 Aligned_cols=109 Identities=27% Similarity=0.444 Sum_probs=96.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||+|||.|..+..-||-.+.++|++||++...++.++ .+|.+.+.+.+.++||++.|||.|..+..
T Consensus 64 wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------ 130 (216)
T KOG0096|consen 64 WDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------ 130 (216)
T ss_pred eecccceeecccccccEEecceeEEEeeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------
Confidence 99999999999999999999999999999999999998 99999999999999999999999976543
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
.......+.+..++ .++++||+++.|.+..|-.+++.+...+
T Consensus 131 ~k~k~v~~~rkknl-~y~~iSaksn~NfekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 131 VKAKPVSFHRKKNL-QYYEISAKSNYNFERPFLWLARKLTGDP 172 (216)
T ss_pred cccccceeeecccc-eeEEeecccccccccchHHHhhhhcCCC
Confidence 22333455566676 9999999999999999999999997654
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.67 E-value=2.2e-16 Score=107.78 Aligned_cols=102 Identities=18% Similarity=0.151 Sum_probs=72.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||||+++|......+++++|++++|+|+++ +.+.+.+ ..+... ...|+++|+||+|+.+....
T Consensus 56 ~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~~------- 122 (164)
T cd04171 56 IDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDWL------- 122 (164)
T ss_pred EECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHHH-------
Confidence 8999999998766778999999999999987 4444432 122221 22499999999998754210
Q ss_pred CccCHHHHHHHHHH---cCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 78 VPVTTAQGEELRKQ---IGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 78 ~~v~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
.....+.....+. .+. +++++||+++.|++++++.+.+
T Consensus 123 -~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 123 -ELVEEEIRELLAGTFLADA-PIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred -HHHHHHHHHHHHhcCcCCC-cEEEEeCCCCcCHHHHHHHHhh
Confidence 0122344444444 344 8999999999999999998764
No 134
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.67 E-value=3.6e-16 Score=105.71 Aligned_cols=103 Identities=22% Similarity=0.298 Sum_probs=79.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+++|..++..+++++|++++|+|++++.++... ..|+..+.... .+.|+++|+||.|+.+...
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--------- 118 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAA-KNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--------- 118 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCCcC---------
Confidence 89999999999999999999999999999999998877 55555544322 4789999999999865421
Q ss_pred ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
..+..... ...+. +++++||+++.|+.++++.+++
T Consensus 119 ---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 119 ---VDELIEQMNLKSITDREV-SCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ---HHHHHHHhCcccccCCce-EEEEEEeccCCChHHHHHHHhh
Confidence 12111111 11223 7899999999999999999875
No 135
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.65 E-value=1.1e-15 Score=109.44 Aligned_cols=122 Identities=27% Similarity=0.466 Sum_probs=91.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccC--CCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLAD--HPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~--~~~~ 77 (150)
|||+||++|..+++.|+.+++++++|||.++..++.+....|...+....+ +.|+++|+||+|+......... ....
T Consensus 59 ~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~ 138 (219)
T COG1100 59 WDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLN 138 (219)
T ss_pred ecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhh
Confidence 999999999999999999999999999999966666666999999998874 7999999999999876421000 0000
Q ss_pred CccCHHHHHHHHHH---cCCcEEEEeccC--CCCCHHHHHHHHHHHHhCCC
Q 031934 78 VPVTTAQGEELRKQ---IGASYYIECSSK--TQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 78 ~~v~~~~~~~~~~~---~~~~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~ 123 (150)
..+........... ... .++++|++ .+.++.++|..+++.+....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 139 REVVLLVLAPKAVLPEVANP-ALLETSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred cCcchhhhHhHHhhhhhccc-ceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence 01122222222222 233 48999999 99999999999999987543
No 136
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.64 E-value=8.1e-16 Score=106.25 Aligned_cols=101 Identities=18% Similarity=0.269 Sum_probs=78.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|++.+...+..+++++|++++|+|+++..++... ..|+..+.+.. .++|+++++||+|+....
T Consensus 63 ~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---------- 131 (173)
T cd04155 63 WDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEA-GAELVELLEEEKLAGVPVLVFANKQDLATAA---------- 131 (173)
T ss_pred EECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECCCCccCC----------
Confidence 89999999998888999999999999999999998887 55554444322 469999999999986432
Q ss_pred ccCHHHHHHHHHHcCC-------cEEEEeccCCCCCHHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGA-------SYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
...+ +.+..++ .+++++||++|.|++++|+.|++
T Consensus 132 --~~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 132 --PAEE---IAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred --CHHH---HHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 1222 2222232 14789999999999999999875
No 137
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.64 E-value=1.6e-15 Score=101.63 Aligned_cols=116 Identities=22% Similarity=0.401 Sum_probs=98.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
||..||++|..+.+...+++.+++++||.+.+.++..+ .+|++..+......-.|+||+|.|+.-.-++ +-++-
T Consensus 74 wdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~fi~lp~-----e~Q~~ 147 (205)
T KOG1673|consen 74 WDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDLFIDLPP-----ELQET 147 (205)
T ss_pred EecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHH-HHHHHHHhccCCccceEEeccchHhhhcCCH-----HHHHH
Confidence 99999999999999999999999999999999999998 8999999887766666889999997543221 11123
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
...++..+++.++. +.+++|+..+.||.++|.-+...++.-+
T Consensus 148 I~~qar~YAk~mnA-sL~F~Sts~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 148 ISRQARKYAKVMNA-SLFFCSTSHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred HHHHHHHHHHHhCC-cEEEeeccccccHHHHHHHHHHHHhCCc
Confidence 55678899999997 9999999999999999999998887654
No 138
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.4e-15 Score=104.39 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=86.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
||..||++++.+|++|+++.+++|||.|.+|++.+..+.+++...+.... .++|+++.+||.|+...-+
T Consensus 66 WDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als---------- 135 (181)
T KOG0070|consen 66 WDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS---------- 135 (181)
T ss_pred EecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC----------
Confidence 99999999999999999999999999999999999988555555555443 4899999999999886532
Q ss_pred cCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
..++.... ....+ .+..++|.+|+|+.+.++.+...+..
T Consensus 136 --~~ei~~~L~l~~l~~~~w-~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 136 --AAEITNKLGLHSLRSRNW-HIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred --HHHHHhHhhhhccCCCCc-EEeeccccccccHHHHHHHHHHHHhc
Confidence 23332222 22344 57889999999999999999988754
No 139
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.62 E-value=1.4e-15 Score=123.18 Aligned_cols=107 Identities=19% Similarity=0.238 Sum_probs=84.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|...+..+++.||++|+|+|+++..+.+.. ..|...+. .+.|+++|+||+|+....
T Consensus 75 iDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------ 138 (595)
T TIGR01393 75 IDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------ 138 (595)
T ss_pred EECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------
Confidence 89999999999999999999999999999998777765 55654443 368999999999986431
Q ss_pred CHHHHHHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 81 TTAQGEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
......++.+.+++. .++++||++|.|+.++|+.+++.+..+.
T Consensus 139 ~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 139 PERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred HHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 222334455555542 4899999999999999999999886653
No 140
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=2.1e-15 Score=114.74 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=83.3
Q ss_pred CCCCCccc----ccccccc---cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCccccccc
Q 031934 1 MNVIGQED----YNRLRPL---SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 1 wDt~G~e~----~~~l~~~---~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~~~~~ 70 (150)
|||||.-+ ...+... ++..++++|+|+|+++..+++++ ..|..++..+.+ ++|+++|+||+|+.....
T Consensus 211 ~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~- 288 (335)
T PRK12299 211 ADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE- 288 (335)
T ss_pred EeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh-
Confidence 89999743 1223333 45579999999999998888887 899988887653 689999999999875432
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+.......+++..+. +++++||+++.|++++++.+.+.+.+
T Consensus 289 ---------~~~~~~~~~~~~~~~-~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 289 ---------EREKRAALELAALGG-PVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred ---------HHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 133344455555665 89999999999999999999988764
No 141
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.62 E-value=2e-15 Score=103.55 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=76.2
Q ss_pred CCCCCcc-----cccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031934 1 MNVIGQE-----DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e-----~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||||+. .+..+. .++++||++++|+|+++..++. ..|+..+ ..+.|+++++||+|+.+.
T Consensus 42 iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~---~~~~~~~---~~~~~ii~v~nK~Dl~~~-------- 106 (158)
T PRK15467 42 IDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRL---PAGLLDI---GVSKRQIAVISKTDMPDA-------- 106 (158)
T ss_pred ccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCccccc---CHHHHhc---cCCCCeEEEEEccccCcc--------
Confidence 8999973 222222 3478999999999999987763 3454443 236899999999998542
Q ss_pred CCCccCHHHHHHHHHHcCC-cEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 76 GLVPVTTAQGEELRKQIGA-SYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 76 ~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
.......++...+. .|++++||+++.|++++|+.+.+.+..
T Consensus 107 -----~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 107 -----DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred -----cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 34556677777764 489999999999999999999887754
No 142
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.61 E-value=4.8e-15 Score=100.63 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=76.1
Q ss_pred CCCCCccccccc------cccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQEDYNRL------RPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~l------~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||++++... +..++. ++|++|+|+|++++.... .|...+.. .++|+++|+||+|+.....
T Consensus 48 iDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~--- 118 (158)
T cd01879 48 VDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL----YLTLQLLE--LGLPVVVALNMIDEAEKRG--- 118 (158)
T ss_pred EECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH----HHHHHHHH--cCCCEEEEEehhhhccccc---
Confidence 899999988753 455664 999999999999865433 33334433 2689999999999875432
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.......+.+.++. +++++||.++.|+.++++.+...+
T Consensus 119 --------~~~~~~~~~~~~~~-~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 119 --------IKIDLDKLSELLGV-PVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred --------chhhHHHHHHhhCC-CeEEEEccCCCCHHHHHHHHHHHh
Confidence 22334566677776 899999999999999999998763
No 143
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.60 E-value=2.7e-15 Score=105.96 Aligned_cols=94 Identities=12% Similarity=0.066 Sum_probs=67.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|..++..+++++|++++|||+++... ... ..|+..+.. .++|+++|+||+|+...... .
T Consensus 70 ~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~-~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~---------~ 136 (194)
T cd01891 70 VDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-PQT-RFVLKKALE--LGLKPIVVINKIDRPDARPE---------E 136 (194)
T ss_pred EECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc-HHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCHH---------H
Confidence 8999999999999999999999999999998432 222 344444433 37899999999998653211 1
Q ss_pred CHHHHHHHHHH-------cCCcEEEEeccCCCCCH
Q 031934 81 TTAQGEELRKQ-------IGASYYIECSSKTQQNV 108 (150)
Q Consensus 81 ~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i 108 (150)
..+++..+.+. .++ +++++||++|.|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~-~iv~~Sa~~g~~~ 170 (194)
T cd01891 137 VVDEVFDLFIELGATEEQLDF-PVLYASAKNGWAS 170 (194)
T ss_pred HHHHHHHHHHHhCCccccCcc-CEEEeehhccccc
Confidence 23444454433 244 8999999999665
No 144
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.59 E-value=4.1e-15 Score=105.92 Aligned_cols=108 Identities=17% Similarity=0.154 Sum_probs=76.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||||+++|.......+..+|++++|+|++++ .+.+.+ ..| .. ....|+++|+||+|+......
T Consensus 88 iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~----~~-~~~~~iiivvNK~Dl~~~~~~------ 155 (203)
T cd01888 88 VDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AAL----EI-MGLKHIIIVQNKIDLVKEEQA------ 155 (203)
T ss_pred EECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHH----HH-cCCCcEEEEEEchhccCHHHH------
Confidence 89999999988777778889999999999974 233332 222 21 123579999999998753210
Q ss_pred CCccCHHHHHHHHHHc---CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 77 LVPVTTAQGEELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
....+.+..++..+ +. +++++||+++.|++++++.+.+.+.+++
T Consensus 156 --~~~~~~i~~~~~~~~~~~~-~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 156 --LENYEQIKKFVKGTIAENA-PIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred --HHHHHHHHHHHhccccCCC-cEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 00123344444433 33 7999999999999999999999887754
No 145
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.59 E-value=5.4e-15 Score=99.71 Aligned_cols=113 Identities=17% Similarity=0.202 Sum_probs=89.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
||+.||..++..|+.||..+|++|+|+|.+|+..+++....+-..+.... .+.|+++++||.|+...-.. .+
T Consensus 65 wDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~-------~~ 137 (185)
T KOG0073|consen 65 WDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSL-------EE 137 (185)
T ss_pred EEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCH-------HH
Confidence 99999999999999999999999999999999999988544444444222 46999999999998743211 00
Q ss_pred c-CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 V-TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+ ..-....+++...+ +++-|||.+|+++.+-|+.++..+..
T Consensus 138 i~~~~~L~~l~ks~~~-~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 138 ISKALDLEELAKSHHW-RLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred HHHhhCHHHhccccCc-eEEEEeccccccHHHHHHHHHHHHHH
Confidence 1 11234456677888 99999999999999999999988875
No 146
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.59 E-value=1.2e-14 Score=106.24 Aligned_cols=97 Identities=23% Similarity=0.283 Sum_probs=79.0
Q ss_pred cccccccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHH
Q 031934 6 QEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 84 (150)
Q Consensus 6 ~e~~~~l~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~ 84 (150)
.|+|+.+.+.+++++|++++|||++++. +++.+ +.|+..+.. .++|+++|+||+|+.+... +..+.
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~----------~~~~~ 89 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDED----------MEKEQ 89 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHH----------HHHHH
Confidence 3789999999999999999999999988 88887 899876654 5799999999999965432 12233
Q ss_pred HHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 85 GEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
...+ +..+. +++++||+++.|++++|+.+..
T Consensus 90 ~~~~-~~~g~-~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 90 LDIY-RNIGY-QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHH-HHCCC-eEEEEecCCchhHHHHHhhhcC
Confidence 4444 45776 8999999999999999998864
No 147
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.57 E-value=1.1e-14 Score=103.37 Aligned_cols=101 Identities=17% Similarity=0.209 Sum_probs=75.7
Q ss_pred CCCCCccc---------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCccccccc
Q 031934 1 MNVIGQED---------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 1 wDt~G~e~---------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~ 70 (150)
|||||..+ |.... ..+.++|++++|+|++++.++.+. ..|.+.+.... .+.|+++|+||+|+.....
T Consensus 94 ~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~- 170 (204)
T cd01878 94 TDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE- 170 (204)
T ss_pred eCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH-
Confidence 89999833 22211 136689999999999999988876 67777776654 4689999999999865432
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
. . ......+. +++++||+++.|+.++++.|...+
T Consensus 171 ----------~-~---~~~~~~~~-~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 171 ----------L-E---ERLEAGRP-DAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ----------H-H---HHhhcCCC-ceEEEEcCCCCCHHHHHHHHHhhC
Confidence 1 1 33444454 899999999999999999987653
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.56 E-value=2.3e-14 Score=98.23 Aligned_cols=107 Identities=17% Similarity=0.226 Sum_probs=73.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||++.|..++..++..+|++++|+|+++....+.. ..+..+.. .++|+++|+||+|+...... -
T Consensus 55 iDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~---------~ 121 (168)
T cd01887 55 IDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNANPE---------R 121 (168)
T ss_pred EeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccccHH---------H
Confidence 89999999999998899999999999999985322221 12222332 36899999999998643210 0
Q ss_pred CHHHHHHHHHH----cC-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 81 TTAQGEELRKQ----IG-ASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 81 ~~~~~~~~~~~----~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
.......+... .+ ..+++++||+++.|+.++++.+.+...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 122 VKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 11122222111 11 137999999999999999999987653
No 149
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.56 E-value=3.4e-14 Score=94.39 Aligned_cols=104 Identities=38% Similarity=0.708 Sum_probs=80.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHH--HHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW--IPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~--~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|+..+......+++.+|++++|+|++++.++... ..| .........+.|+++|+||+|+......
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~-------- 120 (157)
T cd00882 50 WDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERVV-------- 120 (157)
T ss_pred EecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccch--------
Confidence 89999999988888899999999999999999999887 555 2222333358999999999998765431
Q ss_pred ccCHHH-HHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031934 79 PVTTAQ-GEELRKQIGASYYIECSSKTQQNVKAVFDAAI 116 (150)
Q Consensus 79 ~v~~~~-~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 116 (150)
.... ......... .+++++|+.++.|+.++++.+.
T Consensus 121 --~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 121 --SEEELAEQLAKELG-VPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred --HHHHHHHHHHhhcC-CcEEEEecCCCCChHHHHHHHh
Confidence 1111 223333444 4999999999999999999875
No 150
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.55 E-value=1.8e-14 Score=116.98 Aligned_cols=107 Identities=17% Similarity=0.231 Sum_probs=82.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|...+..+++.+|++|+|+|+++....+.. ..|..... .+.|+++|+||+|+....
T Consensus 79 iDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~------------ 142 (600)
T PRK05433 79 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAAD------------ 142 (600)
T ss_pred EECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCccc------------
Confidence 89999999999999999999999999999997666654 45544332 368999999999986432
Q ss_pred CHHHHHHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 81 TTAQGEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
......++...+++. .++++||++|.|+.++++.+.+.+..+.
T Consensus 143 ~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 143 PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 122233444445542 4899999999999999999999887653
No 151
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.55 E-value=3.3e-14 Score=99.10 Aligned_cols=108 Identities=15% Similarity=0.164 Sum_probs=80.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+.++...+..+++.+|++++|+|++++.+... ..++..+.. .+.|+++|+||+|+...... ..
T Consensus 67 iDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~--------~~ 134 (189)
T cd00881 67 IDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT--REHLRIARE--GGLPIIVAINKIDRVGEEDL--------EE 134 (189)
T ss_pred EeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH--HHHHHHHHH--CCCCeEEEEECCCCcchhcH--------HH
Confidence 7999999998888899999999999999998766554 344444444 47999999999998763211 01
Q ss_pred CHHHHHHHHHHc-------------CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 81 TTAQGEELRKQI-------------GASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 81 ~~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
..+.+....+.. ...+++++||+++.|+.+++..+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 223333333332 2348999999999999999999998874
No 152
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.55 E-value=2.5e-14 Score=108.63 Aligned_cols=106 Identities=19% Similarity=0.235 Sum_probs=80.3
Q ss_pred CCCCCcccc----cccccccc---cCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccc
Q 031934 1 MNVIGQEDY----NRLRPLSY---RGADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~----~~l~~~~~---~~ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~ 67 (150)
|||||+.+- ..+...++ ..++++++|+|+++. .+++.+ ..|.+++..+. .+.|+++|+||+|+...
T Consensus 210 ~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 210 ADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred EeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 899998532 23444444 469999999999987 677776 77877776654 37899999999998654
Q ss_pred cccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 68 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.. ..+....+++..+. +++++||+++.|++++++.+.+.+
T Consensus 289 ~~-----------~~~~~~~l~~~~~~-~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 289 EE-----------LAELLKELKKALGK-PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HH-----------HHHHHHHHHHHcCC-cEEEEEccCCcCHHHHHHHHHHHh
Confidence 22 33444556666675 899999999999999999998754
No 153
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.54 E-value=2.3e-14 Score=113.72 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=75.3
Q ss_pred CCCCCccc--------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQED--------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~--------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||++. +......++++||++|+|+|+++..++.+ ..|...+.. .++|+++|+||+|+....
T Consensus 91 ~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~~~~---- 162 (472)
T PRK03003 91 VDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDERGE---- 162 (472)
T ss_pred EeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCccc----
Confidence 89999873 33445668899999999999999877654 355555554 379999999999985421
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
......+ ..++..++++||++|.|++++|+.++..+.+
T Consensus 163 ---------~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 163 ---------ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred ---------hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 1122222 2343356799999999999999999998865
No 154
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.54 E-value=1.8e-14 Score=114.32 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=76.8
Q ss_pred CCCCCc----------cccccccc-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031934 1 MNVIGQ----------EDYNRLRP-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~----------e~~~~l~~-~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~ 69 (150)
|||||+ +.|..+.. .++++||++|+|+|++++.++++. .++..+.. .++|+|+|+||+|+.....
T Consensus 264 ~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~ 339 (472)
T PRK03003 264 VDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDR 339 (472)
T ss_pred EECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhH
Confidence 899995 44544432 467899999999999999999886 45555543 4799999999999975321
Q ss_pred cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 70 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
. .....+...........+++++||++|.||+++|+.+.+.+.
T Consensus 340 ~--------~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 340 R--------YYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred H--------HHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0 001122222222223348999999999999999999988774
No 155
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.53 E-value=4e-14 Score=95.08 Aligned_cols=103 Identities=31% Similarity=0.506 Sum_probs=82.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||+|++++..++..+++.+++++.++|.... .++.+....|...+..... +.|+++++||.|+....
T Consensus 55 ~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---------- 124 (161)
T TIGR00231 55 LDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK---------- 124 (161)
T ss_pred EECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch----------
Confidence 89999999999999999999999999999988 7777763467776766555 89999999999986542
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 115 (150)
............+..+++++||+++.|+.++|+.|
T Consensus 125 --~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 125 --LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred --hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 22333344444444589999999999999999876
No 156
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.53 E-value=4.9e-14 Score=95.35 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=72.8
Q ss_pred CCCCCcccccc--------cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQEDYNR--------LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~--------l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||++.+.. ....+++++|++++|+|..+..+.... .+...+.+. +.|+++|+||+|+.+...
T Consensus 50 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~--- 122 (157)
T cd01894 50 IDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED--- 122 (157)
T ss_pred EECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH---
Confidence 89999988654 234567899999999999886655442 333334332 589999999999875321
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
. .......+..+++++||+++.|++++|+.+++.+
T Consensus 123 --------~----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 123 --------E----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred --------H----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 1 2223345555789999999999999999998753
No 157
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.53 E-value=1.2e-14 Score=96.60 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=82.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
||.+||.+|+++|+.|+++++++++|.|+.++........++...+.+.. .++|++++|||.|++..-
T Consensus 70 wD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL----------- 138 (186)
T KOG0075|consen 70 WDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL----------- 138 (186)
T ss_pred EecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc-----------
Confidence 99999999999999999999999999999999888877555555555544 479999999999987642
Q ss_pred cCHHHHHHHHHHcCC-------cEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 80 VTTAQGEELRKQIGA-------SYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 80 v~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.... +...+|+ .-+|.+|+++..|++-+.+.|+++-
T Consensus 139 -~~~~---li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 139 -SKIA---LIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred -cHHH---HHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence 2222 1222232 2578999999999999999998754
No 158
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.53 E-value=4e-14 Score=97.66 Aligned_cols=106 Identities=22% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCCCCccc----cccccc---ccccCCcEEEEEEeCCCh------hhHHHHHHHHHHHHhhhC--------CCCCEEEEe
Q 031934 1 MNVIGQED----YNRLRP---LSYRGADVFVLAFSLVSR------ASYENVLKKWIPELQHYS--------PGVPVVLVG 59 (150)
Q Consensus 1 wDt~G~e~----~~~l~~---~~~~~ad~~i~v~d~~~~------~s~~~~~~~~~~~i~~~~--------~~~piilv~ 59 (150)
|||||+.+ ...+.. .+++++|++++|+|++++ .++.+. ..|...+.... .+.|+++|+
T Consensus 49 ~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 127 (176)
T cd01881 49 ADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVL 127 (176)
T ss_pred EeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEE
Confidence 89999743 222322 357789999999999998 577776 67776666443 369999999
Q ss_pred eCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 60 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 60 nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
||+|+...... ............+. +++++||+++.|++++++.+.+.
T Consensus 128 NK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 128 NKIDLDDAEEL----------EEELVRELALEEGA-EVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EchhcCchhHH----------HHHHHHHHhcCCCC-CEEEEehhhhcCHHHHHHHHHhh
Confidence 99998754321 11112233333443 79999999999999999998765
No 159
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.52 E-value=5.6e-14 Score=104.17 Aligned_cols=107 Identities=16% Similarity=0.099 Sum_probs=78.3
Q ss_pred CCCCCccccc-cc-------ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQEDYN-RL-------RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~-~l-------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||..+.. .+ ...+++++|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.....
T Consensus 53 vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~---~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~--- 124 (270)
T TIGR00436 53 IDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG---EFVLTKLQN--LKRPVVLTRNKLDNKFKDK--- 124 (270)
T ss_pred EECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH---HHHHHHHHh--cCCCEEEEEECeeCCCHHH---
Confidence 7999976431 11 234678999999999999877664 234444443 3689999999999864321
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
.......++...+..+++++||++|.|++++++.+...+.+.+
T Consensus 125 --------~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 125 --------LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred --------HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence 3344555655556558999999999999999999999886543
No 160
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.5e-14 Score=94.36 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=89.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
||..||++.+.+|++||.+..++|||.|..+....+++..++.+.|.... .+.|+++.+||-|++...
T Consensus 66 wdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~----------- 134 (180)
T KOG0071|consen 66 WDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM----------- 134 (180)
T ss_pred eeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc-----------
Confidence 99999999999999999999999999999999999988777777666443 479999999999998764
Q ss_pred cCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 80 VTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 80 v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
.++++..+.. ..++ -+.++||.++.|+.+-|.++...+-
T Consensus 135 -~pqei~d~leLe~~r~~~W-~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 135 -KPQEIQDKLELERIRDRNW-YVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred -CHHHHHHHhccccccCCcc-EeeccccccchhHHHHHHHHHhhcc
Confidence 4465555443 3344 5789999999999999999987654
No 161
>PRK04213 GTP-binding protein; Provisional
Probab=99.51 E-value=1.4e-14 Score=102.68 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=70.5
Q ss_pred CCCCC-----------ccccccccccccc----CCcEEEEEEeCCChhhHHH---------HHHHHHHHHhhhCCCCCEE
Q 031934 1 MNVIG-----------QEDYNRLRPLSYR----GADVFVLAFSLVSRASYEN---------VLKKWIPELQHYSPGVPVV 56 (150)
Q Consensus 1 wDt~G-----------~e~~~~l~~~~~~----~ad~~i~v~d~~~~~s~~~---------~~~~~~~~i~~~~~~~pii 56 (150)
||||| +++|..++..|+. .++++++|+|.++...... .-..+...+.. .++|++
T Consensus 57 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~i 134 (201)
T PRK04213 57 TDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPI 134 (201)
T ss_pred EeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeE
Confidence 89999 7888887777765 3568888888765322210 00112222222 379999
Q ss_pred EEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC--------cEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 57 LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA--------SYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 57 lv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+|+||+|+.... .+....+++..+. .+++++||++| |++++++.|++.+.+
T Consensus 135 iv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 135 VAVNKMDKIKNR-------------DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred EEEECccccCcH-------------HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 999999986431 2344555555553 14799999999 999999999988653
No 162
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.50 E-value=1.2e-13 Score=111.85 Aligned_cols=101 Identities=15% Similarity=0.290 Sum_probs=72.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
||||||+.|..++..++..+|++|+|+|+++....+.. +.+ ..... .++|+++++||+|+.+.
T Consensus 140 iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~-e~i-~~~~~--~~vPiIVviNKiDl~~~------------- 202 (587)
T TIGR00487 140 LDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTI-EAI-SHAKA--ANVPIIVAINKIDKPEA------------- 202 (587)
T ss_pred EECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHH-HHH-HHHHH--cCCCEEEEEECcccccC-------------
Confidence 89999999999999999999999999999874322221 222 12221 36899999999998642
Q ss_pred CHHHHHHHHHH-------cCC-cEEEEeccCCCCCHHHHHHHHHHH
Q 031934 81 TTAQGEELRKQ-------IGA-SYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 81 ~~~~~~~~~~~-------~~~-~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
..+.....++. ++. .+++++||++|.|+.++++.+...
T Consensus 203 ~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 203 NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhhh
Confidence 12222222222 221 379999999999999999998753
No 163
>PRK15494 era GTPase Era; Provisional
Probab=99.50 E-value=1.1e-13 Score=105.56 Aligned_cols=105 Identities=11% Similarity=0.182 Sum_probs=74.5
Q ss_pred CCCCCcc-ccccccc-------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQE-DYNRLRP-------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e-~~~~l~~-------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||+. .+..+.+ .++++||++++|+|..+. +......|+..+... +.|+++|+||+|+...
T Consensus 105 ~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~----- 175 (339)
T PRK15494 105 YDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL--NIVPIFLLNKIDIESK----- 175 (339)
T ss_pred EECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-----
Confidence 8999985 3444332 247799999999998763 333323566655543 5688899999998542
Q ss_pred CCCCCCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 73 DHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
...++..++...+ ...++++||++|.|++++|+.+...+.+.
T Consensus 176 --------~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 176 --------YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred --------cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence 2244555555443 24799999999999999999999988654
No 164
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.49 E-value=1.7e-13 Score=107.51 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=75.4
Q ss_pred CCCCCcccccccc-----------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031934 1 MNVIGQEDYNRLR-----------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~e~~~~l~-----------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~ 69 (150)
|||||+.++..+. ..+++.||++|+|+|++++.+.++. .+...+.+ .+.|+++|+||+|+.....
T Consensus 225 iDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~ 300 (429)
T TIGR03594 225 IDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL--RIAGLILE--AGKALVIVVNKWDLVKDEK 300 (429)
T ss_pred EECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEECcccCCCHH
Confidence 8999987665443 2368899999999999998888775 45555444 3689999999999972111
Q ss_pred cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 70 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
. .......+.......+..+++++||++|.|+.++|+.+.+.+.
T Consensus 301 ~-------~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 301 T-------REEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred H-------HHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 0001112222222223358999999999999999999887654
No 165
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.48 E-value=1.6e-13 Score=96.72 Aligned_cols=109 Identities=11% Similarity=0.085 Sum_probs=71.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+..+....-...+.+|++++|+|+++..+.+.. +.+. +... .+.|+++|+||+|+...... ..
T Consensus 73 ~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~--------~~ 140 (192)
T cd01889 73 VDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV--IGEI-LCKKLIVVLNKIDLIPEEER--------ER 140 (192)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH--HHHH-cCCCEEEEEECcccCCHHHH--------HH
Confidence 89999976543222345678999999999986544432 2232 1121 25799999999998743210 01
Q ss_pred CHHHHHHHHH-H------cCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 81 TTAQGEELRK-Q------IGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 81 ~~~~~~~~~~-~------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..+++..... . .+. +++++||+++.|++++++.+..++..|
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~-~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 141 KIEKMKKKLQKTLEKTRFKNS-PIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHHHHHHHHHHHHHhcCcCCC-CEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1222322211 1 233 899999999999999999999998765
No 166
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.47 E-value=2.3e-13 Score=95.73 Aligned_cols=107 Identities=21% Similarity=0.311 Sum_probs=78.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
.||||+.+|.......++.+|++|+|+|+.+....+. .+.+..+... ++|+++|.||+|+...... .
T Consensus 75 iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~---------~ 141 (188)
T PF00009_consen 75 IDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILREL--GIPIIVVLNKMDLIEKELE---------E 141 (188)
T ss_dssp EEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHHT--T-SEEEEEETCTSSHHHHH---------H
T ss_pred cccccccceeecccceecccccceeeeeccccccccc--cccccccccc--ccceEEeeeeccchhhhHH---------H
Confidence 4999999999888888999999999999998765544 3444445443 6899999999999843211 0
Q ss_pred CHHHHH-HHHHHcC-----CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 81 TTAQGE-ELRKQIG-----ASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 81 ~~~~~~-~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
..++.. .+.+.++ ..+++++||.+|.|+.++++.+.+.+.
T Consensus 142 ~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 142 IIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 122222 4444443 247999999999999999999998764
No 167
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.47 E-value=1.8e-13 Score=104.78 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=72.1
Q ss_pred CCCCCc---------ccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCccccccc
Q 031934 1 MNVIGQ---------EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 1 wDt~G~---------e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~ 70 (150)
|||+|. +.|.... ..+.+||++++|+|++++.++++. ..|...+.... .+.|+++|+||+|+.....
T Consensus 242 ~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~- 318 (351)
T TIGR03156 242 TDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR- 318 (351)
T ss_pred EecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh-
Confidence 899997 2333322 247899999999999999888776 66666665543 4789999999999864211
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
...... .. .+++++||+++.|++++++.+.+.
T Consensus 319 --------------v~~~~~-~~-~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 319 --------------IERLEE-GY-PEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred --------------HHHHHh-CC-CCEEEEEccCCCCHHHHHHHHHhh
Confidence 111111 12 368999999999999999998764
No 168
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=4.5e-13 Score=104.63 Aligned_cols=106 Identities=22% Similarity=0.300 Sum_probs=80.4
Q ss_pred CCCCCccc----ccccccccc---cCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccc
Q 031934 1 MNVIGQED----YNRLRPLSY---RGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~----~~~l~~~~~---~~ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~~ 67 (150)
|||||..+ ...+...++ ..++++|+|+|+++. .++++. ..|..++..+.+ +.|+++|+||+|+..
T Consensus 211 aD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~- 288 (424)
T PRK12297 211 ADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPE- 288 (424)
T ss_pred EECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcC-
Confidence 79999743 223444444 459999999999865 566666 777777776543 689999999999742
Q ss_pred cccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 68 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..+.+..+++.++. +++++||+++.|++++++.+.+.+...
T Consensus 289 -------------~~e~l~~l~~~l~~-~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 289 -------------AEENLEEFKEKLGP-KVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred -------------CHHHHHHHHHHhCC-cEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 23445566666665 899999999999999999999887654
No 169
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.46 E-value=2.3e-13 Score=112.08 Aligned_cols=103 Identities=16% Similarity=0.283 Sum_probs=73.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||||++.|..++..+++.+|++|+|+|+++. .+++.+ . .+.. .++|+|+++||+|+......
T Consensus 300 iDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~----~~k~--~~iPiIVViNKiDl~~~~~e------- 365 (742)
T CHL00189 300 LDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI-N----YIQA--ANVPIIVAINKIDKANANTE------- 365 (742)
T ss_pred EECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH-H----HHHh--cCceEEEEEECCCccccCHH-------
Confidence 89999999999999999999999999999884 444433 1 2222 36899999999998653210
Q ss_pred CccCHHHHHH---HHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 78 VPVTTAQGEE---LRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 78 ~~v~~~~~~~---~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
....++.. +...++ ..+++++||++|.|+.++++.+....
T Consensus 366 --~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 366 --RIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred --HHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 01111111 122233 24899999999999999999998764
No 170
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.44 E-value=4.8e-13 Score=111.00 Aligned_cols=102 Identities=17% Similarity=0.306 Sum_probs=72.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
||||||+.|..++..+++.+|++|+|+|+++. .+.+.+ . .... .++|+|+++||+|+......
T Consensus 342 iDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i----~-~a~~--~~vPiIVviNKiDl~~a~~e------- 407 (787)
T PRK05306 342 LDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAI----N-HAKA--AGVPIIVAINKIDKPGANPD------- 407 (787)
T ss_pred EECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHH----H-HHHh--cCCcEEEEEECccccccCHH-------
Confidence 89999999999999999999999999999984 444432 1 1111 36999999999998653210
Q ss_pred CccCHHHHH---HHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 78 VPVTTAQGE---ELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 78 ~~v~~~~~~---~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
-...++. .++..++ ..+++++||++|.|+.++++.+...
T Consensus 408 --~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 408 --RVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred --HHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 0111111 1223333 1389999999999999999998754
No 171
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.44 E-value=4.8e-13 Score=108.46 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=80.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||||+++|......++.++|++++|+|+++ +.+++.+ .++ .. .++| +++|+||+|+.+....
T Consensus 55 iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl--~il---~~--lgi~~iIVVlNK~Dlv~~~~~------ 121 (581)
T TIGR00475 55 IDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHL--AVL---DL--LGIPHTIVVITKADRVNEEEI------ 121 (581)
T ss_pred EECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHH--HHH---HH--cCCCeEEEEEECCCCCCHHHH------
Confidence 8999999999888888999999999999998 5566554 222 22 2577 9999999999754321
Q ss_pred CCccCHHHHHHHHHHcC---CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 77 LVPVTTAQGEELRKQIG---ASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
....+++..+.+.++ ..+++++||++|.|+++++..+...+...
T Consensus 122 --~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 122 --KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred --HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 012345556666553 23899999999999999999988776544
No 172
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.44 E-value=4.2e-13 Score=108.59 Aligned_cols=110 Identities=16% Similarity=0.182 Sum_probs=73.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc-------
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY------- 70 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~------- 70 (150)
||||||+.|..++..+++.+|++++|+|+++ +.+++.+ . + +.. .++|+++++||+|+...-..
T Consensus 74 iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~-~---l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~ 146 (590)
T TIGR00491 74 IDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEAL-N-I---LRM--YKTPFVVAANKIDRIPGWRSHEGRPFM 146 (590)
T ss_pred EECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-H-H---HHH--cCCCEEEEEECCCccchhhhccCchHH
Confidence 8999999999999999999999999999997 5566554 2 2 222 26899999999998642100
Q ss_pred --ccCCCCCCccC-------HHHHHHHH-------------HHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 71 --LADHPGLVPVT-------TAQGEELR-------------KQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 71 --~~~~~~~~~v~-------~~~~~~~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
..... ..+. .....++. ...+..+++++||++|+|+++++..+....
T Consensus 147 e~sak~~--~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 147 ESFSKQE--IQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHhhh--HHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 00000 0000 00001111 112234899999999999999999886543
No 173
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.44 E-value=8.6e-13 Score=90.79 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=85.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
+|||||+||..+|+.+++++.++|++.|.+.+.++ +. ..++..+....+ +|+++.+||.|+.+..
T Consensus 73 fgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~------------ 137 (187)
T COG2229 73 FGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDAL------------ 137 (187)
T ss_pred ecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCC------------
Confidence 58999999999999999999999999999999999 43 566666555433 9999999999998765
Q ss_pred CHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 81 TTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 81 ~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
+.+.+.++.... .. +.++.+|..+.+..+.++.+...
T Consensus 138 ppe~i~e~l~~~~~~~-~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 138 PPEKIREALKLELLSV-PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CHHHHHHHHHhccCCC-ceeeeecccchhHHHHHHHHHhh
Confidence 556666666665 54 89999999999999999988876
No 174
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.44 E-value=2.2e-13 Score=107.45 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=73.9
Q ss_pred CCCCCcccccccc--------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQEDYNRLR--------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~l~--------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||++++.... ..+++++|++++|+|++++.++++. ..|.. ..+.|+++|+||+|+.....
T Consensus 268 ~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~--- 338 (449)
T PRK05291 268 IDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID--- 338 (449)
T ss_pred EeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch---
Confidence 8999998765432 2468899999999999999888765 44443 34789999999999865322
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
. . ...+. +++++||+++.|++++++.+.+.+..
T Consensus 339 --------~-~------~~~~~-~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 339 --------L-E------EENGK-PVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred --------h-h------hccCC-ceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 1 1 22333 78999999999999999999988754
No 175
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.2e-13 Score=94.11 Aligned_cols=109 Identities=21% Similarity=0.243 Sum_probs=85.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
||-.||+..+++|..||..++++|+++|+++++.|+.. ..-.+.+.... .++|+++.+||.|+.+..
T Consensus 74 wdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~-~t~~~~v~~~E~leg~p~L~lankqd~q~~~---------- 142 (197)
T KOG0076|consen 74 WDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEES-KTAFEKVVENEKLEGAPVLVLANKQDLQNAM---------- 142 (197)
T ss_pred EEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHH-HHHHHHHHHHHHhcCCchhhhcchhhhhhhh----------
Confidence 99999999999999999999999999999999999887 44444444332 589999999999987653
Q ss_pred ccCHHHHHHHHH---Hc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 79 PVTTAQGEELRK---QI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 79 ~v~~~~~~~~~~---~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
...++..... .. .-.++.++||.+|+||.+-+.++++.+..+
T Consensus 143 --~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 143 --EAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred --hHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 2233333332 11 123689999999999999999999988755
No 176
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.42 E-value=6.5e-13 Score=104.51 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=74.8
Q ss_pred CCCCCcccccccc--------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQEDYNRLR--------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~l~--------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||+.++.... ..+++++|++++|||++++.++++. |+..+.. .+.|+++|+||+|+...
T Consensus 256 ~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~----- 325 (442)
T TIGR00450 256 LDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN----- 325 (442)
T ss_pred eeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc-----
Confidence 8999997655432 3578999999999999999887763 6655543 36899999999998532
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
....+++.++. +++++||++ .||+++|+.+.+.+.+
T Consensus 326 -----------~~~~~~~~~~~-~~~~vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 326 -----------SLEFFVSSKVL-NSSNLSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred -----------chhhhhhhcCC-ceEEEEEec-CCHHHHHHHHHHHHHH
Confidence 11234555665 789999998 6999999999887754
No 177
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.41 E-value=2.2e-13 Score=88.63 Aligned_cols=63 Identities=27% Similarity=0.537 Sum_probs=54.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHH--HHHHHHHhhhCCCCCEEEEeeCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL--KKWIPELQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~--~~~~~~i~~~~~~~piilv~nK~D 63 (150)
||++|++.+...++..+..+|++++|||++++.|++.+. ..|+..+....+++|+++|+||.|
T Consensus 55 ~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 55 WDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 899999999998888899999999999999999999862 346777777667899999999998
No 178
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.41 E-value=8.5e-13 Score=107.15 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=76.0
Q ss_pred CCCCCccccccc------cccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQEDYNRL------RPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~l------~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||++++... .+.++. ++|++++|+|.++.+... .+..++.+ .++|+++|+||+|+.+...
T Consensus 46 vDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l----~l~~ql~~--~~~PiIIVlNK~Dl~~~~~--- 116 (591)
T TIGR00437 46 VDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNL----YLTLQLLE--LGIPMILALNLVDEAEKKG--- 116 (591)
T ss_pred EECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhH----HHHHHHHh--cCCCEEEEEehhHHHHhCC---
Confidence 899999988764 233443 799999999999854321 23333333 3799999999999865433
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
...+...+.+..++ +++++||+++.|++++++.+.+..
T Consensus 117 --------i~~d~~~L~~~lg~-pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 117 --------IRIDEEKLEERLGV-PVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred --------ChhhHHHHHHHcCC-CEEEEECCCCCCHHHHHHHHHHHh
Confidence 23456778888887 999999999999999999998764
No 179
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.40 E-value=2.8e-12 Score=87.79 Aligned_cols=104 Identities=23% Similarity=0.295 Sum_probs=71.0
Q ss_pred CCCCCccccccc----------c-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031934 1 MNVIGQEDYNRL----------R-PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~e~~~~l----------~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~ 69 (150)
|||||..+.... . ..++..+|++++|+|++++.+.... .+...+.. .+.|+++++||+|+.....
T Consensus 55 iDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~~~ 130 (174)
T cd01895 55 IDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEKDS 130 (174)
T ss_pred EECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCccH
Confidence 899997654221 1 1256789999999999998877654 34444333 2689999999999876421
Q ss_pred cccCCCCCCccCHHH-HHHHHHHcC---CcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 70 YLADHPGLVPVTTAQ-GEELRKQIG---ASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 70 ~~~~~~~~~~v~~~~-~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
. .... ...+.+..+ ..+++++||+++.|+.++++.+.+.
T Consensus 131 ~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 131 K----------TMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred H----------HHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 1 1122 222223332 3489999999999999999998764
No 180
>PRK11058 GTPase HflX; Provisional
Probab=99.39 E-value=2.5e-12 Score=100.79 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=73.4
Q ss_pred CCCCCcccc--ccccc------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccc
Q 031934 1 MNVIGQEDY--NRLRP------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYL 71 (150)
Q Consensus 1 wDt~G~e~~--~~l~~------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~ 71 (150)
|||||..+. ..++. ..+++||++|+|+|++++.+++++ ..|...+.... .+.|+++|+||+|+.....
T Consensus 250 ~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-- 326 (426)
T PRK11058 250 ADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-- 326 (426)
T ss_pred EecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh--
Confidence 899998442 12222 246899999999999999888876 55544444433 3799999999999864211
Q ss_pred cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 72 ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
.... ....+...++++||++|.|++++++.+.+.+..
T Consensus 327 -----------~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 327 -----------PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred -----------HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 1111 112344235889999999999999999998854
No 181
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.39 E-value=1.4e-12 Score=88.11 Aligned_cols=95 Identities=18% Similarity=0.223 Sum_probs=71.2
Q ss_pred CCCCCccccccc--------ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQEDYNRL--------RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~l--------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||..++... ....+..+|++++|+|++++.+..+. ..+.. ..+.|+++|+||+|+.+...
T Consensus 54 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~--- 124 (157)
T cd04164 54 IDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE--- 124 (157)
T ss_pred EECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc---
Confidence 899998766432 22467799999999999998888765 33322 34799999999999875432
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
. .....+ .+++++||+++.|+.+++..|...+
T Consensus 125 --------~------~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 125 --------L------LSLLAG-KPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred --------c------ccccCC-CceEEEECCCCCCHHHHHHHHHHhh
Confidence 1 223334 4899999999999999999987753
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=2.7e-12 Score=100.94 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=70.2
Q ss_pred CCCCCccc--------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQED--------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~--------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||++. +......++.++|++|+|+|++++.+..+. .+...+.+. +.|+++|+||+|+....
T Consensus 54 iDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~---- 125 (435)
T PRK00093 54 IDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE---- 125 (435)
T ss_pred EECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch----
Confidence 89999987 222345578899999999999986554432 222223332 68999999999964311
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.....+ ...++..++++||++|.|+.++++.++...
T Consensus 126 ----------~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 126 ----------ADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred ----------hhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 122222 345654689999999999999999998844
No 183
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.38 E-value=9.1e-13 Score=103.46 Aligned_cols=105 Identities=15% Similarity=0.060 Sum_probs=70.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL-KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|......++..+|++++|+|+++..++.... ..+. .+.+.....|+++|+||+|+...... ...
T Consensus 90 iDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~~~~iIVviNK~Dl~~~~~~------~~~ 162 (426)
T TIGR00483 90 VDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLGINQLIVAINKMDSVNYDEE------EFE 162 (426)
T ss_pred EECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcCCCeEEEEEEChhccCccHH------HHH
Confidence 899999999776666789999999999999875432210 1111 12222234579999999998642110 001
Q ss_pred cCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHH
Q 031934 80 VTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF 112 (150)
Q Consensus 80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 112 (150)
....++..+++..++ .+++++||+++.|+.+++
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 134566677777663 379999999999998743
No 184
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.37 E-value=3.7e-12 Score=85.47 Aligned_cols=105 Identities=21% Similarity=0.215 Sum_probs=75.4
Q ss_pred CCCCCccccccccc-------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031934 1 MNVIGQEDYNRLRP-------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 73 (150)
Q Consensus 1 wDt~G~e~~~~l~~-------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 73 (150)
|||||+..+..... .+++.+|++++|+|..+..+.... . +...... .+.|+++|+||.|+......
T Consensus 50 ~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~--- 122 (163)
T cd00880 50 IDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEEE--- 122 (163)
T ss_pred EECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhhH---
Confidence 89999988765554 378899999999999998888765 2 3333332 37999999999998764321
Q ss_pred CCCCCccCHHH--HHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 74 HPGLVPVTTAQ--GEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 74 ~~~~~~v~~~~--~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.... ...........+++++||+++.|+.++++.+.+.+
T Consensus 123 -------~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 123 -------EELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred -------HHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 1110 11222222334899999999999999999998753
No 185
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.37 E-value=2.4e-12 Score=100.97 Aligned_cols=103 Identities=19% Similarity=0.271 Sum_probs=76.5
Q ss_pred CCCCCc--------ccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQ--------EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~--------e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||. +.+......++++||++++|+|.++..+..+. .+...+++. ++|+++|+||+|+.....
T Consensus 52 iDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~--- 124 (429)
T TIGR03594 52 IDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA--- 124 (429)
T ss_pred EECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc---
Confidence 899996 44445566688999999999999986655542 344444442 689999999999865321
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
... . +..+++.+++++||++|.|+.++++.+.+.+...
T Consensus 125 --------~~~---~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 125 --------VAA---E-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred --------cHH---H-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcc
Confidence 111 1 3456666899999999999999999999888553
No 186
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.36 E-value=2.2e-12 Score=100.67 Aligned_cols=107 Identities=20% Similarity=0.159 Sum_probs=75.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChh----hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA----SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~----s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
||||||++|...+..+...+|++++|+|+++.. +.+.+ ..+. .....|+++|+||+|+.+....
T Consensus 85 iDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-----~~l~-~~gi~~iIVvvNK~Dl~~~~~~------ 152 (406)
T TIGR03680 85 VDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHL-----MALE-IIGIKNIVIVQNKIDLVSKEKA------ 152 (406)
T ss_pred EECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHH-----HHHH-HcCCCeEEEEEEccccCCHHHH------
Confidence 799999999887777888899999999999643 34433 2222 2223579999999998753210
Q ss_pred CCccCHHHHHHHHHHc---CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 77 LVPVTTAQGEELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
.....++..+.... ++ +++++||+++.|++++++.|...+..+
T Consensus 153 --~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~~~ 198 (406)
T TIGR03680 153 --LENYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIPTP 198 (406)
T ss_pred --HHHHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCCCC
Confidence 00123334444433 44 899999999999999999999876543
No 187
>PRK00089 era GTPase Era; Reviewed
Probab=99.36 E-value=4.1e-12 Score=95.09 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=77.1
Q ss_pred CCCCCccccc--------ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQEDYN--------RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~--------~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||..... .....++.++|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+......
T Consensus 58 iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~--~~i~~~l~~--~~~pvilVlNKiDl~~~~~~-- 131 (292)
T PRK00089 58 VDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGD--EFILEKLKK--VKTPVILVLNKIDLVKDKEE-- 131 (292)
T ss_pred EECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhH--HHHHHHHhh--cCCCEEEEEECCcCCCCHHH--
Confidence 7999975432 222346789999999999998433222 233444442 36899999999999743221
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
.......+.+..+..+++++||+++.|++++++.+...+...
T Consensus 132 --------l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 132 --------LLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred --------HHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 345556666666666899999999999999999999988653
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.34 E-value=2.5e-12 Score=106.59 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=74.5
Q ss_pred CCCCCcc----------cccccc-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031934 1 MNVIGQE----------DYNRLR-PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~e----------~~~~l~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~ 69 (150)
|||||+. .|..+. ..+++.+|++++|+|+++..++++. .+...+.. .++|+++|+||+|+.+...
T Consensus 503 iDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~--~i~~~~~~--~~~piIiV~NK~DL~~~~~ 578 (712)
T PRK09518 503 IDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDL--KVMSMAVD--AGRALVLVFNKWDLMDEFR 578 (712)
T ss_pred EECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEEchhcCChhH
Confidence 8999953 333332 2357899999999999999888875 34444543 3799999999999875321
Q ss_pred cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 70 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
. .................+++++||++|.|++++++.+.+.+..
T Consensus 579 ~--------~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 579 R--------QRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred H--------HHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 0 0011111111112234477999999999999999999887754
No 189
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.34 E-value=4.9e-12 Score=85.84 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=73.5
Q ss_pred CCCCCcccccc--------cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQEDYNR--------LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~--------l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||...... ....++..+|++++|+|++++.+... ..+...+... +.|+++|+||+|+......
T Consensus 56 iDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~--~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~-- 129 (168)
T cd04163 56 VDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGD--EFILELLKKS--KTPVILVLNKIDLVKDKED-- 129 (168)
T ss_pred EECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchH--HHHHHHHHHh--CCCEEEEEEchhccccHHH--
Confidence 79999765432 23346789999999999998733322 3344444433 5899999999998743221
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
.......+....+..+++++|++++.|++++++.|.+.
T Consensus 130 --------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 130 --------LLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred --------HHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 33444555555544589999999999999999999765
No 190
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.34 E-value=3.9e-12 Score=103.67 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=76.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||||+++|.......+.++|++++|+|+++ +.+.+.+ .+ +... ++| +++|+||+|+.+....
T Consensus 56 IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl--~i---l~~l--gi~~iIVVlNKiDlv~~~~~------ 122 (614)
T PRK10512 56 IDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHL--AI---LQLT--GNPMLTVALTKADRVDEARI------ 122 (614)
T ss_pred EECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHH--HH---HHHc--CCCeEEEEEECCccCCHHHH------
Confidence 7999999998777778999999999999997 4455543 22 2221 456 5799999998753221
Q ss_pred CCccCHHHHHHHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 77 LVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
....+++..+....++ .+++++||++|.|++++++.|.....
T Consensus 123 --~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 123 --AEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred --HHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 0123455555555442 48999999999999999999987654
No 191
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.33 E-value=6e-12 Score=98.41 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=72.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
|||||+++|..........+|++++|+|++++ .+.+.+ . .+.. ....|+++|+||+|+.+....
T Consensus 90 iDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~----~l~~-~~i~~iiVVlNK~Dl~~~~~~------ 157 (411)
T PRK04000 90 VDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-M----ALDI-IGIKNIVIVQNKIDLVSKERA------ 157 (411)
T ss_pred EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-H----HHHH-cCCCcEEEEEEeeccccchhH------
Confidence 89999999876444455567999999999964 333332 1 2222 122479999999998753220
Q ss_pred CCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 77 LVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 77 ~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
....+++..+++.+ ...+++++||+++.|++++++.|...+..+
T Consensus 158 --~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 158 --LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred --HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 00123344444332 113899999999999999999999877543
No 192
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.33 E-value=4.2e-12 Score=105.29 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=72.9
Q ss_pred CCCCCccc--------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQED--------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~--------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
|||||.+. +......+++.||++|+|+|+++..+..+ ..|...+.. .+.|+++|+||+|+....
T Consensus 328 iDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~--~~~pvIlV~NK~D~~~~~---- 399 (712)
T PRK09518 328 VDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD--ERIVRMLRR--AGKPVVLAVNKIDDQASE---- 399 (712)
T ss_pred EeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHh--cCCCEEEEEECcccccch----
Confidence 89999874 22333457899999999999987544433 356666654 379999999999975421
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
.....+ ...+....+++||++|.||.++++.+++.+..
T Consensus 400 ----------~~~~~~-~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 400 ----------YDAAEF-WKLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ----------hhHHHH-HHcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 111222 12343356899999999999999999998854
No 193
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.32 E-value=4e-12 Score=103.18 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=80.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|......+++.+|++++|+|+++...-+. ..|+..+... ++|+|+|+||+|+...... .
T Consensus 69 IDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT--~~~l~~a~~~--~ip~IVviNKiD~~~a~~~---------~ 135 (594)
T TIGR01394 69 VDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQT--RFVLKKALEL--GLKPIVVINKIDRPSARPD---------E 135 (594)
T ss_pred EECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHH--HHHHHHHHHC--CCCEEEEEECCCCCCcCHH---------H
Confidence 7999999999988999999999999999987543332 4555555443 6899999999998653211 0
Q ss_pred CHHHHHHHHHH-------cCCcEEEEeccCCCC----------CHHHHHHHHHHHHhCCC
Q 031934 81 TTAQGEELRKQ-------IGASYYIECSSKTQQ----------NVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~~ 123 (150)
...++..+... ..+ +++++||+++. |+..+|+.+++.+..+.
T Consensus 136 v~~ei~~l~~~~g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 136 VVDEVFDLFAELGADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred HHHHHHHHHHhhccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 22333333322 234 78999999996 79999999999987653
No 194
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.32 E-value=3.7e-12 Score=100.17 Aligned_cols=107 Identities=17% Similarity=0.154 Sum_probs=73.1
Q ss_pred CCCCCccccccc----------c-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031934 1 MNVIGQEDYNRL----------R-PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~e~~~~l----------~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~ 69 (150)
|||||..+...+ . ..+++.+|++|+|+|++++.+.++. .+...+.+. +.|+++|+||+|+.....
T Consensus 226 vDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~ 301 (435)
T PRK00093 226 IDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKT 301 (435)
T ss_pred EECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHH
Confidence 799996543322 2 2367899999999999998888774 455454442 689999999999874321
Q ss_pred cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 70 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
. ..............+..+++++||+++.|++++++.+.+..
T Consensus 302 ~--------~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 302 M--------EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred H--------HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 00112222222223345899999999999999999887654
No 195
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.31 E-value=1.2e-11 Score=96.07 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=79.1
Q ss_pred CCCCCcccccc----ccc---ccccCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccc
Q 031934 1 MNVIGQEDYNR----LRP---LSYRGADVFVLAFSLV---SRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~----l~~---~~~~~ad~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~ 67 (150)
+||||..+=.. +.. .++.+++++++|+|++ +...+++. ..|.+++.... .+.|+++|+||+|+...
T Consensus 212 vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 212 ADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred EeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 69999754111 111 2577899999999998 45566665 77877777654 36899999999998653
Q ss_pred cccccCCCCCCccCHHHHHHHHHHcCCc-EEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 68 KHYLADHPGLVPVTTAQGEELRKQIGAS-YYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
.. ..+.+..+.+..+.. +++++||+++.|++++++.+.+.+.+.
T Consensus 291 ~e-----------l~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 291 EE-----------AEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred HH-----------HHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 22 234444555554432 689999999999999999999988653
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.31 E-value=4.4e-12 Score=99.56 Aligned_cols=103 Identities=15% Similarity=0.070 Sum_probs=67.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC--hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS--RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~--~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|||||+++|.......++.+|++|+|+|+++ ...-+. .+++..+.. ....|+++++||+|+...... ..
T Consensus 89 iDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~--~~~~~~~~~-~~~~~iivviNK~Dl~~~~~~------~~ 159 (425)
T PRK12317 89 VDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQT--REHVFLART-LGINQLIVAINKMDAVNYDEK------RY 159 (425)
T ss_pred EECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcch--HHHHHHHHH-cCCCeEEEEEEccccccccHH------HH
Confidence 8999999987755566789999999999997 222221 122222222 222469999999998752110 00
Q ss_pred ccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHH
Q 031934 79 PVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF 112 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 112 (150)
....+++..+++..++ .+++++||++|.|+.++.
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 0133455666666653 379999999999998744
No 197
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.30 E-value=1.1e-11 Score=100.62 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=72.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc-cc----
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY-LA---- 72 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~-~~---- 72 (150)
|||||++.|..++..+++.+|++++|+|+++ +.+++.+ .. +.. .++|+++++||+|+...-.. .+
T Consensus 76 iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~~----~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~ 148 (586)
T PRK04004 76 IDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-NI----LKR--RKTPFVVAANKIDRIPGWKSTEDAPFL 148 (586)
T ss_pred EECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-HH----HHH--cCCCEEEEEECcCCchhhhhhcCchHH
Confidence 8999999999999889999999999999998 6666654 22 222 37899999999998521100 00
Q ss_pred CCCC--CCccCH------HHHHHHHHHc--------------CCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 73 DHPG--LVPVTT------AQGEELRKQI--------------GASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 73 ~~~~--~~~v~~------~~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
.... ...+.. .+........ +..+++++||++|.|+.+++..+...
T Consensus 149 e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 149 ESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 0000 000000 0011111211 22479999999999999999887643
No 198
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=9.5e-12 Score=82.59 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=80.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
||-.||-..+.+|++||.+.+++|+|.|.+|.....-...+++..+.+.. .+..+++++||.|....... .+
T Consensus 67 wdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~-------~E 139 (182)
T KOG0072|consen 67 WDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTR-------SE 139 (182)
T ss_pred eEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhH-------HH
Confidence 89999999999999999999999999999997655443344555555433 35788999999997653210 00
Q ss_pred cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+......+-.+..-+ .++++||.+|+|++++.++|.+.+..
T Consensus 140 ~~~~L~l~~Lk~r~~-~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 140 VLKMLGLQKLKDRIW-QIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred HHHHhChHHHhhhee-EEEeeccccccCCcHHHHHHHHHHhc
Confidence 111111112222234 89999999999999999999987754
No 199
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.29 E-value=1.5e-11 Score=86.57 Aligned_cols=107 Identities=21% Similarity=0.147 Sum_probs=72.2
Q ss_pred CCCCC----------cccccccccccccCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031934 1 MNVIG----------QEDYNRLRPLSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G----------~e~~~~l~~~~~~~a---d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
||||| ++++..+...+++.+ +++++|+|.+++.+..+. .+...+.. .+.|+++++||.|+.+.
T Consensus 75 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 75 VDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKK 150 (196)
T ss_pred eCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCH
Confidence 89999 455666666677655 678899998876555432 22222322 36899999999998654
Q ss_pred cccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 68 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
... ......+......... +++++||+++.|+.++++.+.+.+-
T Consensus 151 ~~~--------~~~~~~i~~~l~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 151 GER--------KKQLKKVRKALKFGDD-EVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHH--------HHHHHHHHHHHHhcCC-ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 221 0122334444444444 8999999999999999999887654
No 200
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.28 E-value=2.2e-11 Score=96.67 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=72.7
Q ss_pred CCCCCcccc----cccccc---cccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhC------------CCCCEEE
Q 031934 1 MNVIGQEDY----NRLRPL---SYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYS------------PGVPVVL 57 (150)
Q Consensus 1 wDt~G~e~~----~~l~~~---~~~~ad~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~------------~~~piil 57 (150)
|||||..+- ..+... ++..++++|+|+|+++. ..++++ ..|..++..+. .+.|+|+
T Consensus 211 aDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IV 289 (500)
T PRK12296 211 ADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLV 289 (500)
T ss_pred EECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEE
Confidence 799996321 112222 45679999999999863 244443 44554554332 3689999
Q ss_pred EeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 58 VGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 58 v~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
|+||+|+.+... ..+.........++ +++++||+++.|+.+++..|.+.+..
T Consensus 290 VlNKiDL~da~e-----------l~e~l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 290 VLNKIDVPDARE-----------LAEFVRPELEARGW-PVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred EEECccchhhHH-----------HHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999865322 22223333345566 89999999999999999999887754
No 201
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.28 E-value=8.1e-12 Score=89.27 Aligned_cols=102 Identities=19% Similarity=0.125 Sum_probs=66.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|......+++.+|++|+|+|++++..-+.. .....+... ...++|+|+||+|+...... ....
T Consensus 82 iDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~------~~~~ 152 (208)
T cd04166 82 ADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEE------VFEE 152 (208)
T ss_pred EECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHH------HHHH
Confidence 79999999876666678999999999999986433321 222222221 22457889999998642110 0001
Q ss_pred CHHHHHHHHHHcCC--cEEEEeccCCCCCHHHH
Q 031934 81 TTAQGEELRKQIGA--SYYIECSSKTQQNVKAV 111 (150)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~ 111 (150)
...++..+.+.++. .+++++||+++.|+.+.
T Consensus 153 i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 153 IVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 23455566666664 25899999999999854
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.26 E-value=1.8e-11 Score=99.49 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=79.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+.+|...+..+++.+|++|+|+|+++....+.. .++..+.. .++|+++++||+|+...... -
T Consensus 73 iDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~--~gip~IVviNKiD~~~a~~~---------~ 139 (607)
T PRK10218 73 VDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFA--YGLKPIVVINKVDRPGARPD---------W 139 (607)
T ss_pred EECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHH--cCCCEEEEEECcCCCCCchh---------H
Confidence 89999999999999999999999999999986544432 33333333 37899999999998754321 0
Q ss_pred CHHHHHHHHHH-------cCCcEEEEeccCCCC----------CHHHHHHHHHHHHhCCC
Q 031934 81 TTAQGEELRKQ-------IGASYYIECSSKTQQ----------NVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 81 ~~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~~ 123 (150)
...++..+... ..+ |++.+||++|. ++..+++.++..+..+.
T Consensus 140 vl~ei~~l~~~l~~~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 140 VVDQVFDLFVNLDATDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred HHHHHHHHHhccCccccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 22333333322 233 78999999998 58899999999887653
No 203
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.26 E-value=3.6e-11 Score=86.94 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=68.9
Q ss_pred CCCCccccccccccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 2 NVIGQEDYNRLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
||||+++|.......+. .+|++++|+|+.....-++ ..++..+... ++|+++|.||+|+.+.... .
T Consensus 90 DtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~--------~ 157 (224)
T cd04165 90 DLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPANIL--------Q 157 (224)
T ss_pred ECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHHHH--------H
Confidence 99999999765444443 6899999999987655443 3444444443 6899999999998654221 0
Q ss_pred cCHHHHHHHHHH-------------------------cCCcEEEEeccCCCCCHHHHHHHHH
Q 031934 80 VTTAQGEELRKQ-------------------------IGASYYIECSSKTQQNVKAVFDAAI 116 (150)
Q Consensus 80 v~~~~~~~~~~~-------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~ 116 (150)
....++..+.+. ....|++.+||.+|.|++++...|.
T Consensus 158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 012222222221 1134899999999999999987764
No 204
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.26 E-value=1.3e-11 Score=88.46 Aligned_cols=115 Identities=18% Similarity=0.151 Sum_probs=73.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV 78 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~ 78 (150)
|||||+++|......++..+|++++|+|+++..+... ..|+..... .+.|+++|+||+|+...+.... ......
T Consensus 76 iDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~~l 151 (213)
T cd04167 76 IDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYFKL 151 (213)
T ss_pred EECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHHHH
Confidence 8999999998888889999999999999998776654 345554433 2589999999999752110000 000000
Q ss_pred ccCHHHHHHHHHHcCC------cE----EEEeccCCCCCHH--------HHHHHHHHHH
Q 031934 79 PVTTAQGEELRKQIGA------SY----YIECSSKTQQNVK--------AVFDAAIKVV 119 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~------~~----~~~~Sa~~~~~i~--------~~~~~l~~~~ 119 (150)
.-..+++..++..++. .| +++.|++.+.++. ++++.+...+
T Consensus 152 ~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~ 210 (213)
T cd04167 152 RHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI 210 (213)
T ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence 0112334444444432 12 6788999887665 5555555544
No 205
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.25 E-value=3.1e-11 Score=102.59 Aligned_cols=111 Identities=22% Similarity=0.266 Sum_probs=71.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
||||||+.|..++..++..+|++++|+|+++ +.+++.+ . .+.. .++|+++|+||+|+...-.......-.
T Consensus 531 iDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I-~----~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~ 603 (1049)
T PRK14845 531 IDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAI-N----ILRQ--YKTPFVVAANKIDLIPGWNISEDEPFL 603 (1049)
T ss_pred EECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHH-H----HHHH--cCCCEEEEEECCCCccccccccchhhh
Confidence 8999999999988888999999999999997 5555544 2 2222 268999999999986421100000000
Q ss_pred Ccc------CHHHHH----HH---HHH--------------cCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 78 VPV------TTAQGE----EL---RKQ--------------IGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 78 ~~v------~~~~~~----~~---~~~--------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
.++ ...+.. .+ ... .+..+++++||++|+|+++++..+...
T Consensus 604 ~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 604 LNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 000 000000 00 111 233589999999999999999877644
No 206
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=6.5e-11 Score=93.31 Aligned_cols=108 Identities=20% Similarity=0.243 Sum_probs=85.6
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT 81 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~ 81 (150)
|||||-+|+.-....+.-++|+|+|.|++...-.+-+ ..++..+.. +.-+|.|.||+|++....
T Consensus 131 DTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adp------------ 194 (650)
T KOG0462|consen 131 DTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADP------------ 194 (650)
T ss_pred cCCCcccccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCH------------
Confidence 9999999999999999999999999999997777665 455445544 688999999999988753
Q ss_pred HHHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCCcc
Q 031934 82 TAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 125 (150)
Q Consensus 82 ~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 125 (150)
.....++.+.+. ..+.+.+||++|.|++++++.+++.+..|+..
T Consensus 195 e~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 195 ERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred HHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence 223333333333 24789999999999999999999999876543
No 207
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.24 E-value=4.3e-11 Score=87.24 Aligned_cols=117 Identities=13% Similarity=0.096 Sum_probs=81.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc---------c
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY---------L 71 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~---------~ 71 (150)
|||||+.+|...+..+++.+|++++|+|.++....+. ..+...+.+. ++|+++++||+|+...... +
T Consensus 69 iDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~ 144 (237)
T cd04168 69 IDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKL 144 (237)
T ss_pred EeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHH
Confidence 8999999999888899999999999999998765543 4555555543 6899999999998642100 0
Q ss_pred cC------C--------------------------------CCCCccCHHHHH----HHHHHcCCcEEEEeccCCCCCHH
Q 031934 72 AD------H--------------------------------PGLVPVTTAQGE----ELRKQIGASYYIECSSKTQQNVK 109 (150)
Q Consensus 72 ~~------~--------------------------------~~~~~v~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~ 109 (150)
.. - -+..+++.+++. .-...-.+.|++..||.++.|+.
T Consensus 145 ~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~ 224 (237)
T cd04168 145 SSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIE 224 (237)
T ss_pred CCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHH
Confidence 00 0 001122322222 22223344688888999999999
Q ss_pred HHHHHHHHHHhC
Q 031934 110 AVFDAAIKVVIK 121 (150)
Q Consensus 110 ~~~~~l~~~~~~ 121 (150)
.+++.+.+.+..
T Consensus 225 ~ll~~~~~~~p~ 236 (237)
T cd04168 225 ELLEGITKLFPT 236 (237)
T ss_pred HHHHHHHHhcCC
Confidence 999999988754
No 208
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1e-10 Score=92.07 Aligned_cols=99 Identities=17% Similarity=0.335 Sum_probs=75.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
.|||||+-|..|+....+=+|++|+|.|++| |++.+.+ +..+. .++|+++..||+|+.+..
T Consensus 60 iDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI-----~hak~--a~vP~iVAiNKiDk~~~n--------- 123 (509)
T COG0532 60 IDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAI-----NHAKA--AGVPIVVAINKIDKPEAN--------- 123 (509)
T ss_pred EcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHH-----HHHHH--CCCCEEEEEecccCCCCC---------
Confidence 3999999999999999999999999999998 4455443 11111 379999999999998543
Q ss_pred CccCHHHHHHHHHHcCC--------cEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 78 VPVTTAQGEELRKQIGA--------SYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+.....-.+.+++ ..++++||++|+|+.+++..+.-+.
T Consensus 124 ----p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 124 ----PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred ----HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 2333333333333 4689999999999999999887544
No 209
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.22 E-value=5e-11 Score=86.02 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=50.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
|||||+++|......+++.+|++++|+|+++..+.+.. ..+..... .++|+++|+||+|+.
T Consensus 78 iDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 78 IDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred ECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCcc
Confidence 89999999999999999999999999999998766653 33333332 268999999999986
No 210
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.22 E-value=1.7e-11 Score=85.42 Aligned_cols=97 Identities=16% Similarity=0.153 Sum_probs=64.9
Q ss_pred CCCCCc----------ccccccccccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031934 1 MNVIGQ----------EDYNRLRPLSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~----------e~~~~l~~~~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|||||. +.|..+...|++. ++++++|+|++++.+..+. .+...+.. .+.|+++|+||+|+...
T Consensus 69 iDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~--~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 69 VDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE--RGIPVLIVLTKADKLKK 144 (179)
T ss_pred EeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCH
Confidence 899994 3455555566664 5799999999987666654 33344443 26899999999998643
Q ss_pred cccccCCCCCCccCHHHHHHHHHHcCC-cEEEEeccCCCCCHH
Q 031934 68 KHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKTQQNVK 109 (150)
Q Consensus 68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 109 (150)
... ....+++...+...+. .+++++||++|+|++
T Consensus 145 ~~~--------~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 145 SEL--------NKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HHH--------HHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 210 0133444555555432 279999999999973
No 211
>PRK00098 GTPase RsgA; Reviewed
Probab=99.21 E-value=7.8e-11 Score=88.59 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=66.7
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 031934 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 96 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (150)
..++|++++|+|++++.++...++.|+..+.. .++|+++|+||+|+.+... .........+..+. +
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~-----------~~~~~~~~~~~~g~-~ 143 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLE-----------EARELLALYRAIGY-D 143 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHH-----------HHHHHHHHHHHCCC-e
Confidence 38999999999999887665555788776654 4799999999999863221 22334455566776 8
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q 031934 97 YIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 97 ~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
++++||+++.|+++++..+..
T Consensus 144 v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 144 VLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred EEEEeCCCCccHHHHHhhccC
Confidence 999999999999999987743
No 212
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.21 E-value=1.1e-10 Score=90.84 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=89.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
-|||||-+|+.-....+..|.|+++|.|+++....+-+ ...+-.+.. +..+|-|.||+|++...
T Consensus 81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Ad------------ 144 (603)
T COG0481 81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAAD------------ 144 (603)
T ss_pred cCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCC------------
Confidence 39999999999888899999999999999998777766 555555554 68899999999998865
Q ss_pred CHHHHHHHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHHhCCCcch
Q 031934 81 TTAQGEELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 126 (150)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 126 (150)
+.....++-...|+ ...+.+|||+|.||+++++.+++.+..|....
T Consensus 145 pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~ 192 (603)
T COG0481 145 PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDP 192 (603)
T ss_pred HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCC
Confidence 33444555555665 34789999999999999999999998775433
No 213
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.20 E-value=1.8e-11 Score=88.10 Aligned_cols=100 Identities=15% Similarity=0.047 Sum_probs=63.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc--ccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA-------SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK--HYL 71 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~-------s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~--~~~ 71 (150)
|||||+.+|......+++.+|++|+|+|+++.. ..+.. ..+ .... .....|+++++||+|+.... ..
T Consensus 82 iDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~~~- 157 (219)
T cd01883 82 LDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHA-LLAR-TLGVKQLIVAVNKMDDVTVNWSEE- 157 (219)
T ss_pred EECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHH-HHHH-HcCCCeEEEEEEccccccccccHH-
Confidence 799999988766666778899999999999842 11221 222 2222 22336899999999987321 00
Q ss_pred cCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHH
Q 031934 72 ADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVK 109 (150)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~ 109 (150)
...-..+++..+....++ .+++++||++|.|+.
T Consensus 158 -----~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 -----RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred -----HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 000022333344455543 379999999999987
No 214
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.19 E-value=1.2e-11 Score=81.86 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=80.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
||+.||...+.+|..||.+.|++|+|+|.+|...|+++..++.+.+.... ..+|+.+.+||.|+...-.
T Consensus 67 wDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~---------- 136 (185)
T KOG0074|consen 67 WDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK---------- 136 (185)
T ss_pred EecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc----------
Confidence 99999999999999999999999999999999999988555555444332 4799999999999876432
Q ss_pred cCHHHHHH-----HHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 80 VTTAQGEE-----LRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 80 v~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
.++... -.+...+ .+.++||.+++|+.+-.+.+...
T Consensus 137 --~eeia~klnl~~lrdRsw-hIq~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 137 --VEEIALKLNLAGLRDRSW-HIQECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred --hHHHHHhcchhhhhhceE-EeeeCccccccCccCcchhhhcC
Confidence 122211 1122223 67899999999999888877654
No 215
>PRK12736 elongation factor Tu; Reviewed
Probab=99.17 E-value=8.3e-11 Score=91.60 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=74.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|.......+..+|++++|+|+++...-+. .+++..+... ++| +|++.||+|+.+.... .+
T Consensus 80 iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~-------~~ 148 (394)
T PRK12736 80 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDDEEL-------LE 148 (394)
T ss_pred EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcchHHH-------HH
Confidence 6999999997766666788999999999987433332 2233333332 678 6789999998743211 00
Q ss_pred cCHHHHHHHHHHcCC----cEEEEeccCCCC--------CHHHHHHHHHHHHhC
Q 031934 80 VTTAQGEELRKQIGA----SYYIECSSKTQQ--------NVKAVFDAAIKVVIK 121 (150)
Q Consensus 80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~--------~i~~~~~~l~~~~~~ 121 (150)
...+++..+....++ .+++++||+++. ++.++++.+.+.+..
T Consensus 149 ~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 149 LVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred HHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 123455666666653 489999999983 578888888777653
No 216
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.16 E-value=1.4e-10 Score=82.19 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=66.8
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCcc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
||||+.+|.......+..+|++++|+|+.....-+. .+.+..+... ++| +|++.||+|+...... ...
T Consensus 71 DtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~-------~~~ 139 (195)
T cd01884 71 DCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEEL-------LEL 139 (195)
T ss_pred ECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHHH-------HHH
Confidence 999999988777778889999999999987544433 2344444443 566 7899999998632210 011
Q ss_pred CHHHHHHHHHHcCC----cEEEEeccCCCCCH
Q 031934 81 TTAQGEELRKQIGA----SYYIECSSKTQQNV 108 (150)
Q Consensus 81 ~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i 108 (150)
..+++..+....++ .+++++||++|.|+
T Consensus 140 ~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 140 VEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 33455566665543 58999999999885
No 217
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.16 E-value=1.6e-10 Score=81.41 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=65.8
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHH
Q 031934 9 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 88 (150)
Q Consensus 9 ~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~ 88 (150)
|..+++.+++++|++++|+|++++.... ...+.....+.|+++|+||+|+..... .......+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~------~~~l~~~~~~~~~ilV~NK~Dl~~~~~-----------~~~~~~~~ 86 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSL------IPRLRLFGGNNPVILVGNKIDLLPKDK-----------NLVRIKNW 86 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCcc------chhHHHhcCCCcEEEEEEchhcCCCCC-----------CHHHHHHH
Confidence 4567778999999999999999865221 112222224689999999999865322 23333333
Q ss_pred H-----HHcCC--cEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 89 R-----KQIGA--SYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 89 ~-----~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
. +..+. .+++++||+++.|++++++.+...+.
T Consensus 87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 22222 36899999999999999999988763
No 218
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.16 E-value=5.5e-11 Score=79.75 Aligned_cols=97 Identities=21% Similarity=0.218 Sum_probs=72.8
Q ss_pred CCCC----cccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031934 2 NVIG----QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 2 Dt~G----~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|||| ...|..-.-....+||.+++|.|.+++.+..- +.+...+ +.|+|-|.||+|+.....
T Consensus 42 DTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p--P~fa~~f-----~~pvIGVITK~Dl~~~~~-------- 106 (143)
T PF10662_consen 42 DTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP--PGFASMF-----NKPVIGVITKIDLPSDDA-------- 106 (143)
T ss_pred ECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC--chhhccc-----CCCEEEEEECccCccchh--------
Confidence 7887 22333323345569999999999999765443 3333333 479999999999984332
Q ss_pred CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031934 78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 116 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 116 (150)
..+.+.++.+..|+.++|++|+.+++||+++.+.|-
T Consensus 107 ---~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 107 ---NIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred ---hHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 667888899999998999999999999999998763
No 219
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.16 E-value=1e-10 Score=79.86 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=66.3
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHH
Q 031934 9 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 88 (150)
Q Consensus 9 ~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~ 88 (150)
|+.+.+++++++|++|+|+|++++....+ ..+...+.. .+.|+++|+||+|+.+... ......+
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~------------~~~~~~~ 65 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE--LGKKLLIVLNKADLVPKEV------------LEKWKSI 65 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh--CCCcEEEEEEhHHhCCHHH------------HHHHHHH
Confidence 34566778889999999999988754433 123322222 2689999999999854211 1122233
Q ss_pred HHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 89 RKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 89 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
....+. +++++||+++.|++++++.+.+.+.
T Consensus 66 ~~~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 66 KESEGI-PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred HHhCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence 344454 7899999999999999999988775
No 220
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.15 E-value=8.1e-11 Score=83.87 Aligned_cols=66 Identities=14% Similarity=0.235 Sum_probs=53.4
Q ss_pred CCCCCcccccccccccccCC-cEEEEEEeCCCh-hhHHHHHHHHHHHHh----hhCCCCCEEEEeeCCCcccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGA-DVFVLAFSLVSR-ASYENVLKKWIPELQ----HYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~a-d~~i~v~d~~~~-~s~~~~~~~~~~~i~----~~~~~~piilv~nK~D~~~~ 67 (150)
|||||++++...+..+++++ +++|+|+|+++. .++..+ ..|+..+. ...+++|+++++||.|+...
T Consensus 53 ~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~-~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 53 VDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDV-AEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHH-HHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 89999999998888899999 999999999997 677776 44443332 12257999999999998754
No 221
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.14 E-value=2.7e-10 Score=88.33 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=73.8
Q ss_pred CCCCccccc-----c----cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 2 NVIGQEDYN-----R----LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 2 Dt~G~e~~~-----~----l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
||+|.+.-. . .....+..||++|||+|.....+-.+ +...+.+++ .++|+++|+||+|-...
T Consensus 57 DTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D--~~ia~~Lr~--~~kpviLvvNK~D~~~~----- 127 (444)
T COG1160 57 DTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPAD--EEIAKILRR--SKKPVILVVNKIDNLKA----- 127 (444)
T ss_pred ECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEEcccCchh-----
Confidence 889977433 1 12347889999999999998666665 355555553 36999999999995522
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+....-.-.+|+..++.+||.+|.|+.++.+.++..+.
T Consensus 128 ----------e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 128 ----------EELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred ----------hhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 22222334456668999999999999999999999985
No 222
>PRK12289 GTPase RsgA; Reviewed
Probab=99.13 E-value=4.6e-10 Score=86.03 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=70.3
Q ss_pred ccccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHH
Q 031934 9 YNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 87 (150)
Q Consensus 9 ~~~l~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~ 87 (150)
-+.+.+.++.++|.+++|+|+.++. +...+ ..|+..+.. .++|+++|+||+|+.+.. .......
T Consensus 79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~------------~~~~~~~ 143 (352)
T PRK12289 79 KTELDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPT------------EQQQWQD 143 (352)
T ss_pred ccceechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChH------------HHHHHHH
Confidence 3445566899999999999999876 44444 777765532 479999999999986432 1123334
Q ss_pred HHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 88 LRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 88 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
....++. +++++||+++.|++++++.+...+
T Consensus 144 ~~~~~g~-~v~~iSA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 144 RLQQWGY-QPLFISVETGIGLEALLEQLRNKI 174 (352)
T ss_pred HHHhcCC-eEEEEEcCCCCCHHHHhhhhccce
Confidence 4456777 899999999999999999886543
No 223
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.13 E-value=2.8e-10 Score=88.26 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=79.9
Q ss_pred CCCCc----------cccccccc-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031934 2 NVIGQ----------EDYNRLRP-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 2 Dt~G~----------e~~~~l~~-~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 70 (150)
||||. |.|+..+. ..+..||++++|.|++.+.+-++. .+...+.+. +.++++|.||+|+.+....
T Consensus 232 DTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~~ 307 (444)
T COG1160 232 DTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDEA 307 (444)
T ss_pred ECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchhh
Confidence 88884 44544433 367789999999999999998885 677666654 7899999999999875321
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.......++.......++.+.+++||+++.+++++|+.+....
T Consensus 308 ------~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 308 ------TMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred ------HHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHH
Confidence 0011223444555556778999999999999999999887655
No 224
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.11 E-value=5.3e-10 Score=93.25 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=76.4
Q ss_pred CCCCCccccccccc----------ccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031934 1 MNVIGQEDYNRLRP----------LSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~l~~----------~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 68 (150)
|||||+.++..... .++ ..+|++++|+|.++.+... .|...+.+. +.|+++|+||+|+.+..
T Consensus 55 vDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~ 128 (772)
T PRK09554 55 VDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQ 128 (772)
T ss_pred EECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhcc
Confidence 79999988765322 233 3799999999999865432 244444443 69999999999986543
Q ss_pred ccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 69 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
. .......+.+.+++ +++++||+++.|++++.+.+....
T Consensus 129 ~-----------i~id~~~L~~~LG~-pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 129 N-----------IRIDIDALSARLGC-PVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred C-----------cHHHHHHHHHHhCC-CEEEEEeecCCCHHHHHHHHHHhh
Confidence 3 34566777888897 999999999999999999988764
No 225
>COG1159 Era GTPase [General function prediction only]
Probab=99.11 E-value=4.4e-10 Score=83.04 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=79.8
Q ss_pred CCCCccccc--------ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031934 2 NVIGQEDYN--------RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 73 (150)
Q Consensus 2 Dt~G~e~~~--------~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 73 (150)
||||-.+=. ......+.++|+++||.|+++...-.+ +..++.++. .+.|++++.||+|..+....
T Consensus 60 DTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~~--- 132 (298)
T COG1159 60 DTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKTV--- 132 (298)
T ss_pred eCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHHH---
Confidence 999954422 223457889999999999998655543 355666655 35899999999998765421
Q ss_pred CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 74 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
.......+........++++||+++.|++.+.+.+..++.+.+
T Consensus 133 -------l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 133 -------LLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred -------HHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCC
Confidence 2344455555666678999999999999999999999997643
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.11 E-value=1.9e-10 Score=89.65 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=62.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|..........+|++++|+|+++....+. .+.+..+... ++|.+ +++||+|+.+.... ..
T Consensus 80 iDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt--~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~-------~~ 148 (394)
T TIGR00485 80 VDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEEL-------LE 148 (394)
T ss_pred EECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEecccCCHHHH-------HH
Confidence 7999999987655556678899999999998433332 1222233322 57765 68999998753211 00
Q ss_pred cCHHHHHHHHHHcCC----cEEEEeccCCCC
Q 031934 80 VTTAQGEELRKQIGA----SYYIECSSKTQQ 106 (150)
Q Consensus 80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~ 106 (150)
...+++..+++.++. .+++++||.++.
T Consensus 149 ~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 149 LVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 123456677777763 489999999875
No 227
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.09 E-value=7.4e-10 Score=82.89 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=67.0
Q ss_pred cccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031934 16 SYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 94 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (150)
.+.++|++++|+|++++. ++..+ +.|+..+.. .++|+++|+||+|+.... ............+.
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~--~~ip~iIVlNK~DL~~~~------------~~~~~~~~~~~~g~ 139 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEA--AGIEPVIVLTKADLLDDE------------EEELELVEALALGY 139 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHH--cCCCEEEEEEHHHCCChH------------HHHHHHHHHHhCCC
Confidence 388999999999999988 77776 888876654 379999999999986531 11222333445676
Q ss_pred cEEEEeccCCCCCHHHHHHHHHH
Q 031934 95 SYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 95 ~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
+++++||+++.|+++++..+..
T Consensus 140 -~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 140 -PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred -eEEEEECCCCccHHHHHhhhcc
Confidence 8999999999999999988764
No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=99.08 E-value=3.7e-10 Score=88.00 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=74.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
+||||+++|.......+..+|++++|+|+.+....+. .+++..+.. .++|.+ ++.||+|+.+.... ..
T Consensus 80 iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~-------~~ 148 (396)
T PRK12735 80 VDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVDDEEL-------LE 148 (396)
T ss_pred EECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEecCCcchHHH-------HH
Confidence 6999999987766677889999999999987543332 233333433 257865 57999998743210 01
Q ss_pred cCHHHHHHHHHHcCC----cEEEEeccCCCC----------CHHHHHHHHHHHHh
Q 031934 80 VTTAQGEELRKQIGA----SYYIECSSKTQQ----------NVKAVFDAAIKVVI 120 (150)
Q Consensus 80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~l~~~~~ 120 (150)
....++..+.+.++. .+++++||.++. ++.++++.|...+.
T Consensus 149 ~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 123456666666653 479999999984 67788888877654
No 229
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.07 E-value=4.5e-10 Score=86.52 Aligned_cols=96 Identities=24% Similarity=0.352 Sum_probs=71.3
Q ss_pred cccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHH
Q 031934 6 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 85 (150)
Q Consensus 6 ~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~ 85 (150)
.++|..+...+++.++++++|+|+.+.. ..|.+.+.+...+.|+++|+||+|+..... ..+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~k~~-----------~~~~~ 112 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLPKSV-----------NLSKI 112 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCCCCC-----------CHHHH
Confidence 5678888888999999999999997754 234444444445789999999999975321 22333
Q ss_pred H----HHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHH
Q 031934 86 E----ELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 86 ~----~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
. ++++..++. .++++||+++.|++++++.+.+.
T Consensus 113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 3 446666652 58999999999999999999764
No 230
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.05 E-value=9.7e-10 Score=88.35 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=48.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||||+++|......+++.+|++|+|+|+++...... ..+...... .++|+++++||+|+..
T Consensus 84 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 84 LDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRL--RDTPIFTFINKLDRDG 145 (526)
T ss_pred EECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHh--cCCCEEEEEECCcccc
Confidence 8999999999877778999999999999998643332 344444433 3799999999999864
No 231
>PRK09866 hypothetical protein; Provisional
Probab=99.04 E-value=1.6e-09 Score=87.69 Aligned_cols=107 Identities=11% Similarity=0.071 Sum_probs=73.4
Q ss_pred CCCCcccc-----cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC
Q 031934 2 NVIGQEDY-----NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG 76 (150)
Q Consensus 2 Dt~G~e~~-----~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~ 76 (150)
||||...- +......+.+||++++|.|.++..+..+ ....+.+.+.....|+++|.||+|+......
T Consensus 236 DTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~dreed------ 307 (741)
T PRK09866 236 DTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQDRNSD------ 307 (741)
T ss_pred ECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCCcccc------
Confidence 99997642 2223347899999999999998666555 3456666654334699999999998642210
Q ss_pred CCccCHHHHHHHHH----H--cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 77 LVPVTTAQGEELRK----Q--IGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 77 ~~~v~~~~~~~~~~----~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
..+.+..+.. . .....++++||+.|.|++++++.+...-.
T Consensus 308 ----dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~ 353 (741)
T PRK09866 308 ----DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGK 353 (741)
T ss_pred ----hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCC
Confidence 2333333322 1 22457999999999999999999988544
No 232
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.04 E-value=1.9e-10 Score=91.20 Aligned_cols=99 Identities=28% Similarity=0.455 Sum_probs=79.0
Q ss_pred cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCCCCccCHH-HHHHHH
Q 031934 14 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA-QGEELR 89 (150)
Q Consensus 14 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~-~~~~~~ 89 (150)
..-++.||++.++|+.+++.+++.+...|++.+++.. -++||||||||+|....... ..+ ...-+.
T Consensus 74 ~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~----------s~e~~~~pim 143 (625)
T KOG1707|consen 74 RKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN----------SDEVNTLPIM 143 (625)
T ss_pred HHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc----------chhHHHHHHH
Confidence 3457889999999999999999999999999999988 57999999999998765431 111 233333
Q ss_pred HHc-CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 90 KQI-GASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 90 ~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..+ .+...++|||++..++.++|+..-+.++.+
T Consensus 144 ~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 144 IAFAEIETCIECSALTLANVSELFYYAQKAVIHP 177 (625)
T ss_pred HHhHHHHHHHhhhhhhhhhhHhhhhhhhheeecc
Confidence 333 244679999999999999999998888765
No 233
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.03 E-value=5.7e-10 Score=76.19 Aligned_cols=97 Identities=21% Similarity=0.269 Sum_probs=64.8
Q ss_pred CCCCCccccccc------ccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031934 1 MNVIGQEDYNRL------RPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~l------~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~ 72 (150)
.|+||.-..... ...++ ...|++|+|.|+++.+.-.. ...++.+. +.|+++|.||+|......
T Consensus 52 vDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~----l~~ql~e~--g~P~vvvlN~~D~a~~~g--- 122 (156)
T PF02421_consen 52 VDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLY----LTLQLLEL--GIPVVVVLNKMDEAERKG--- 122 (156)
T ss_dssp EE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHH----HHHHHHHT--TSSEEEEEETHHHHHHTT---
T ss_pred EECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHH----HHHHHHHc--CCCEEEEEeCHHHHHHcC---
Confidence 388885433332 23344 57999999999998653332 33344443 699999999999877654
Q ss_pred CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 031934 73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 115 (150)
.......+.+.+++ |++++||+++.|++++++.+
T Consensus 123 --------~~id~~~Ls~~Lg~-pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 123 --------IEIDAEKLSERLGV-PVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp --------EEE-HHHHHHHHTS--EEEEBTTTTBTHHHHHHHH
T ss_pred --------CEECHHHHHHHhCC-CEEEEEeCCCcCHHHHHhhC
Confidence 22245667777897 99999999999999999865
No 234
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.03 E-value=1.7e-09 Score=78.68 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=38.2
Q ss_pred CCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 53 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 53 ~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+|+++|+||+|+.+. ++...++.. .+++++||+++.|++++|+.+.+.+
T Consensus 177 ~p~iiV~NK~Dl~~~---------------~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 177 IPCLYVYNKIDLISI---------------EELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eeEEEEEECccCCCH---------------HHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 699999999998532 333344443 2689999999999999999998765
No 235
>PRK13351 elongation factor G; Reviewed
Probab=99.03 E-value=1.2e-09 Score=90.54 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=52.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|||||+.+|...+..+++.+|++++|+|+++....+.. ..| ..+.. .++|+++++||+|+...
T Consensus 78 iDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 78 IDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADR--YGIPRLIFINKMDRVGA 140 (687)
T ss_pred EECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHh--cCCCEEEEEECCCCCCC
Confidence 89999999999889999999999999999998777654 444 33433 26899999999998753
No 236
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.03 E-value=1.8e-09 Score=73.33 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=67.4
Q ss_pred CCCCCc----------ccccccccccccC---CcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 1 MNVIGQ----------EDYNRLRPLSYRG---ADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~----------e~~~~l~~~~~~~---ad~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||+|. +.+..+...|+.. .+++++++|.++..+.... +..|+... +.|+++|+||+|+..
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~ 124 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLK 124 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCC
Confidence 799993 3455555556654 5688999999876433221 13444332 489999999999854
Q ss_pred ccccccCCCCCCccCHHHHHHHHH-HcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 67 DKHYLADHPGLVPVTTAQGEELRK-QIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.... ...........+ .....+++++||+++.++.++++.|.+.+
T Consensus 125 ~~~~--------~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 125 KSEL--------AKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred hHHH--------HHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 3210 001122223332 23335899999999999999999998753
No 237
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.02 E-value=1.5e-09 Score=85.93 Aligned_cols=111 Identities=11% Similarity=0.090 Sum_probs=73.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
.||||+++|....-..+..+|++++|+|++.. ...+.. +.+ ..+. ...-.|+|+|.||+|+.+.... .
T Consensus 122 IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~-~lgi~~iIVvlNKiDlv~~~~~--------~ 190 (460)
T PTZ00327 122 VDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVE-IMKLKHIIILQNKIDLVKEAQA--------Q 190 (460)
T ss_pred eeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHH-HcCCCcEEEEEecccccCHHHH--------H
Confidence 49999999987767778899999999999974 222221 222 2222 1222468999999998753210 0
Q ss_pred cCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 80 VTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 80 v~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
-..+++..+.+.. ...+++++||++|.|++.+++.|...+..+
T Consensus 191 ~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 191 DQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred HHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 0123333333321 234899999999999999999999866543
No 238
>PRK12288 GTPase RsgA; Reviewed
Probab=99.02 E-value=3e-09 Score=81.52 Aligned_cols=89 Identities=17% Similarity=0.258 Sum_probs=67.2
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031934 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
.++|.+++|++.+...++..+ +.|+..+.. .++|+++|+||+|+...... ..........+..+. ++
T Consensus 119 ANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~~~~---------~~~~~~~~~y~~~g~-~v 185 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDDEGR---------AFVNEQLDIYRNIGY-RV 185 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCcHHH---------HHHHHHHHHHHhCCC-eE
Confidence 569999999999988888887 899775543 47999999999999753210 012233334456676 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 031934 98 IECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 98 ~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+++||+++.|++++++.+...+
T Consensus 186 ~~vSA~tg~GideL~~~L~~ki 207 (347)
T PRK12288 186 LMVSSHTGEGLEELEAALTGRI 207 (347)
T ss_pred EEEeCCCCcCHHHHHHHHhhCC
Confidence 9999999999999999886543
No 239
>PRK13768 GTPase; Provisional
Probab=99.00 E-value=1.5e-09 Score=79.83 Aligned_cols=119 Identities=16% Similarity=0.127 Sum_probs=69.8
Q ss_pred CCCCCccccc---cccccccc---C--CcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCEEEEeeCCCcccccccc
Q 031934 1 MNVIGQEDYN---RLRPLSYR---G--ADVFVLAFSLVSRASYENVL-KKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 71 (150)
Q Consensus 1 wDt~G~e~~~---~l~~~~~~---~--ad~~i~v~d~~~~~s~~~~~-~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~ 71 (150)
|||||+.++. .+++.+++ . ++++++|+|+....+..+.. ..|+........+.|+++|+||+|+.+.....
T Consensus 102 ~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~ 181 (253)
T PRK13768 102 VDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELE 181 (253)
T ss_pred EeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHH
Confidence 7999988743 33333333 2 89999999997544332221 23443333223479999999999987643210
Q ss_pred c--CCCC---------------CCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 72 A--DHPG---------------LVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 72 ~--~~~~---------------~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
. +... +... ...+....+..+ ..+++++||+++.|++++.+.+.+.+.
T Consensus 182 ~~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 182 RILKWLEDPEYLLEELKLEKGLQGLL-SLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred HHHHHHhCHHHHHHHHhcccchHHHH-HHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 0 0000 0000 001111122333 237899999999999999999988774
No 240
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.97 E-value=1.2e-09 Score=85.50 Aligned_cols=101 Identities=20% Similarity=0.128 Sum_probs=65.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|.......+..+|++++|+|+.....-+.. +.| ..+... ...+++++.||+|+...... ....
T Consensus 85 iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~-~~~~~~-~~~~iivviNK~D~~~~~~~------~~~~ 155 (406)
T TIGR02034 85 ADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHS-YIASLL-GIRHVVLAVNKMDLVDYDEE------VFEN 155 (406)
T ss_pred EeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHH-HHHHHc-CCCcEEEEEEecccccchHH------HHHH
Confidence 69999999977666788999999999999875433321 122 122221 23468999999998642210 0000
Q ss_pred CHHHHHHHHHHcCC--cEEEEeccCCCCCHHH
Q 031934 81 TTAQGEELRKQIGA--SYYIECSSKTQQNVKA 110 (150)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 110 (150)
..++...+.+.++. .+++++||++|.|+.+
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 12333344455443 3699999999999886
No 241
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.94 E-value=4.6e-09 Score=71.80 Aligned_cols=90 Identities=14% Similarity=0.053 Sum_probs=60.2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 95 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 95 (150)
.+.+||++++|.|+.++....+ ..+.+.+.....+.|+++|.||+|+..... .......+.+.+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-----------~~~~~~~~~~~~~~- 70 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-----------TARWVKILSKEYPT- 70 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-----------HHHHHHHHhcCCcE-
Confidence 5779999999999998753322 233334433334689999999999864321 12223333333332
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHH
Q 031934 96 YYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 96 ~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
..+.+||+.+.|++++++.+...+
T Consensus 71 ~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 71 IAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EEEEeeccccccHHHHHHHHHHHH
Confidence 357899999999999999997654
No 242
>PRK12740 elongation factor G; Reviewed
Probab=98.92 E-value=5e-09 Score=86.66 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=50.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||||+.+|...+..+++.+|++++|+|+++....... ..| ..+.. .++|+++|+||+|+..
T Consensus 65 iDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 65 IDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVW-RQAEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred EECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHH-HHHHH--cCCCEEEEEECCCCCC
Confidence 79999999988888899999999999999987766654 333 33333 2689999999999864
No 243
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.91 E-value=2.4e-09 Score=84.65 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=67.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhhCCCCC-EEEEeeCCCccccccccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE-------NVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLA 72 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~-------~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~ 72 (150)
.|||||++|......++..+|++|+|+|+++. .|+ .. .+.+..... .++| +|+++||+|+...... .
T Consensus 90 iDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT-~eh~~~~~~--~gi~~iIV~vNKmD~~~~~~~-~ 164 (447)
T PLN00043 90 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQT-REHALLAFT--LGVKQMICCCNKMDATTPKYS-K 164 (447)
T ss_pred EECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchH-HHHHHHHHH--cCCCcEEEEEEcccCCchhhh-H
Confidence 39999999999888899999999999999973 221 22 222222222 2564 7889999997621100 0
Q ss_pred CCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 031934 73 DHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA 110 (150)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 110 (150)
..-.-..+++..+++..++ .+++++||.+|.|+.+
T Consensus 165 ---~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 165 ---ARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred ---HHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 0000134567777777663 3799999999999853
No 244
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.9e-08 Score=79.80 Aligned_cols=100 Identities=19% Similarity=0.289 Sum_probs=74.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
.|||||.-|+.|+...-.-+|++++|....|. .+.+.+ ...+. .++|+|+..||+|.++...
T Consensus 206 LDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaI-----khAk~--A~VpiVvAinKiDkp~a~p-------- 270 (683)
T KOG1145|consen 206 LDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAI-----KHAKS--ANVPIVVAINKIDKPGANP-------- 270 (683)
T ss_pred ecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHH-----HHHHh--cCCCEEEEEeccCCCCCCH--------
Confidence 49999999999999999999999999999984 444443 11111 3799999999999876532
Q ss_pred CccCHHHHHHHH------HHcCC-cEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 78 VPVTTAQGEELR------KQIGA-SYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 78 ~~v~~~~~~~~~------~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
....+++. ..+|. .+++++||++|.|++.+-+.++-+.
T Consensus 271 ----ekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 271 ----EKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred ----HHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 22222222 22332 5789999999999999999887655
No 245
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.89 E-value=1.8e-09 Score=85.94 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=63.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
|||||+++|.......+..+|++++|+|++....-+.. +.+. .+... ...|+|++.||+|+...... ....
T Consensus 112 iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~~-l~~~l-g~~~iIvvvNKiD~~~~~~~------~~~~ 182 (474)
T PRK05124 112 ADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHSF-IATLL-GIKHLVVAVNKMDLVDYSEE------VFER 182 (474)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHHH-HHHHh-CCCceEEEEEeeccccchhH------HHHH
Confidence 69999999976555567999999999999875432211 1111 11111 12478999999998742210 0000
Q ss_pred CHHHHHHHHHHcC---CcEEEEeccCCCCCHHHH
Q 031934 81 TTAQGEELRKQIG---ASYYIECSSKTQQNVKAV 111 (150)
Q Consensus 81 ~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~ 111 (150)
...++..+....+ ..+++++||+++.|+.++
T Consensus 183 i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 183 IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1123333334333 248999999999999864
No 246
>CHL00071 tufA elongation factor Tu
Probab=98.89 E-value=5.2e-09 Score=81.98 Aligned_cols=95 Identities=19% Similarity=0.169 Sum_probs=65.8
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCcc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
||||+.+|.......+..+|++++|+|+.....-+. .+.+..+... ++| +|++.||+|+.+.... .+.
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~-------~~~ 149 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQV--GVPNIVVFLNKEDQVDDEEL-------LEL 149 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEccCCCCHHHH-------HHH
Confidence 999999987766777889999999999987544333 2333344332 678 7789999999753221 011
Q ss_pred CHHHHHHHHHHcCC----cEEEEeccCCCCC
Q 031934 81 TTAQGEELRKQIGA----SYYIECSSKTQQN 107 (150)
Q Consensus 81 ~~~~~~~~~~~~~~----~~~~~~Sa~~~~~ 107 (150)
...++..+.+..++ .+++++||.++.+
T Consensus 150 ~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 150 VELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 23456666666553 4899999999864
No 247
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.88 E-value=4.2e-09 Score=78.09 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=48.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|||||+++|......+++.+|++|+|+|+++...... ..+...... .++|+++++||+|+...
T Consensus 76 iDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 76 LDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred EECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHh--cCCCEEEEEECCccCCC
Confidence 8999999998877778999999999999988644332 344444333 36899999999997654
No 248
>PRK00049 elongation factor Tu; Reviewed
Probab=98.87 E-value=9.1e-09 Score=80.27 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=72.1
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCcccccccccCCCCCCcc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
||||+++|.......+..+|++++|+|+.....-+. .+++..+... ++|.+ ++.||+|+.+.... ...
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~-------~~~ 149 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEEL-------LEL 149 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHHH-------HHH
Confidence 999999987766777899999999999987644433 2344444433 58976 58999998742210 001
Q ss_pred CHHHHHHHHHHcCC----cEEEEeccCCCC----------CHHHHHHHHHHHHh
Q 031934 81 TTAQGEELRKQIGA----SYYIECSSKTQQ----------NVKAVFDAAIKVVI 120 (150)
Q Consensus 81 ~~~~~~~~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~l~~~~~ 120 (150)
...++..+....++ .+++++||+++. ++..+++.|...+.
T Consensus 150 ~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 22344555555443 489999999875 46677777776544
No 249
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.85 E-value=1.7e-08 Score=81.31 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=47.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||||+.+|......+++.+|++|+|+|+++...-.. ..+.+.... .++|+++++||+|+..
T Consensus 85 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 85 LDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRT--RKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHh--cCCCEEEEEECccccC
Confidence 7999999998877778999999999999987533221 344443333 3689999999999853
No 250
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.82 E-value=1.5e-08 Score=75.46 Aligned_cols=90 Identities=20% Similarity=0.117 Sum_probs=63.1
Q ss_pred ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHc
Q 031934 13 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 92 (150)
Q Consensus 13 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 92 (150)
....+..||++++|.|+.++.+.+.. .+.+.+ .+.|+|+|.||+|+.+.. .......+.+..
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~------------~~~~~~~~~~~~ 76 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPA------------VTKQWLKYFEEK 76 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHH------------HHHHHHHHHHHc
Confidence 34578899999999999887665432 233333 268999999999985421 112222233334
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 93 GASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 93 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
+. +++.+||+++.|+.++.+.+.+.+.+
T Consensus 77 ~~-~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 77 GI-KALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 43 78999999999999999999887754
No 251
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.82 E-value=1.4e-08 Score=68.31 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=53.4
Q ss_pred cccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031934 16 SYRGADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 94 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~-~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (150)
.+.++|++++|+|+.++.+..+ .+..|+... ..++|+++|+||+|+.... .........+..+.
T Consensus 8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~------------~~~~~~~~~~~~~~ 72 (141)
T cd01857 8 VVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEE------------QRKAWAEYFKKEGI 72 (141)
T ss_pred HHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHH------------HHHHHHHHHHhcCC
Confidence 5778999999999999876553 113444332 2578999999999986432 22344455666665
Q ss_pred cEEEEeccCCCCC
Q 031934 95 SYYIECSSKTQQN 107 (150)
Q Consensus 95 ~~~~~~Sa~~~~~ 107 (150)
+++++||+++.+
T Consensus 73 -~ii~iSa~~~~~ 84 (141)
T cd01857 73 -VVVFFSALKENA 84 (141)
T ss_pred -eEEEEEecCCCc
Confidence 899999998764
No 252
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.82 E-value=5.9e-09 Score=77.41 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=49.0
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||||+.+|...+..+++.+|++|+|+|+.+...-+. ..+...+... ++|++++.||+|+..
T Consensus 69 iDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~ 130 (270)
T cd01886 69 IDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTG 130 (270)
T ss_pred EECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence 7999999998888889999999999999988654333 2334444432 689999999999875
No 253
>PLN03126 Elongation factor Tu; Provisional
Probab=98.79 E-value=1.6e-08 Score=80.47 Aligned_cols=96 Identities=20% Similarity=0.156 Sum_probs=65.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVP 79 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~ 79 (150)
|||||+++|.......+..+|++++|+|+.+...-+. .+++..+... ++| +|++.||+|+.+.... .+
T Consensus 149 iDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~-------~~ 217 (478)
T PLN03126 149 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEEL-------LE 217 (478)
T ss_pred EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHHH-------HH
Confidence 6999999998777777889999999999997654443 2344344433 678 7889999998753210 01
Q ss_pred cCHHHHHHHHHHcCC----cEEEEeccCCCCC
Q 031934 80 VTTAQGEELRKQIGA----SYYIECSSKTQQN 107 (150)
Q Consensus 80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~ 107 (150)
....++..+.+..++ .+++++||.++.+
T Consensus 218 ~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 218 LVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 123355566665432 4799999988743
No 254
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.79 E-value=5.4e-08 Score=73.85 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=78.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~ 69 (150)
||++||...+..|..++.+++++|+|+|+++- ..+.+.+..+...+.... .++|++|++||.|+.....
T Consensus 166 ~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki 245 (317)
T cd00066 166 FDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKI 245 (317)
T ss_pred ECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhh
Confidence 89999999999999999999999999999973 345544333333333222 5799999999999765432
Q ss_pred c---cc---CCCCCCccCHHHHHHHHHH-----c----CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 70 Y---LA---DHPGLVPVTTAQGEELRKQ-----I----GASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 70 ~---~~---~~~~~~~v~~~~~~~~~~~-----~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
. .. .+.....-..+.+..+... . .......++|.+..++..+|+.+...++..
T Consensus 246 ~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 246 KKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred cCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 1 00 1111101122222222211 1 112446789999999999999988887653
No 255
>PLN03127 Elongation factor Tu; Provisional
Probab=98.79 E-value=2.7e-08 Score=78.73 Aligned_cols=110 Identities=21% Similarity=0.203 Sum_probs=69.2
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCcc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
||||+++|..........+|++++|+|+++...-+. .+.+..+... ++| +|++.||+|+.+.... .+.
T Consensus 130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~~-------~~~ 198 (447)
T PLN03127 130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEEL-------LEL 198 (447)
T ss_pred ECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHHH-------HHH
Confidence 999999987655556778999999999987544333 2333334332 588 5788999998753210 001
Q ss_pred CHHHHHHHHHHcCC----cEEEEeccC---CCCC-------HHHHHHHHHHHHhCC
Q 031934 81 TTAQGEELRKQIGA----SYYIECSSK---TQQN-------VKAVFDAAIKVVIKP 122 (150)
Q Consensus 81 ~~~~~~~~~~~~~~----~~~~~~Sa~---~~~~-------i~~~~~~l~~~~~~~ 122 (150)
...++..+...+++ .+++++||. ++.| +.++++.+...+..+
T Consensus 199 i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p 254 (447)
T PLN03127 199 VEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEP 254 (447)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCC
Confidence 12234444444332 478888876 4444 677777777765533
No 256
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.78 E-value=5.7e-08 Score=66.25 Aligned_cols=83 Identities=18% Similarity=0.088 Sum_probs=56.6
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHH--HHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031934 21 DVFVLAFSLVSRASYENVLKKWIP--ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 98 (150)
Q Consensus 21 d~~i~v~d~~~~~s~~~~~~~~~~--~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 98 (150)
|++++|+|+.++.+.... ++. .+. ..+.|+++|.||+|+..... .......+....+ ..++
T Consensus 1 Dvvl~VvD~~~p~~~~~~---~i~~~~~~--~~~~p~IiVlNK~Dl~~~~~-----------~~~~~~~~~~~~~-~~ii 63 (155)
T cd01849 1 DVILEVLDARDPLGTRSP---DIERVLIK--EKGKKLILVLNKADLVPKEV-----------LRKWLAYLRHSYP-TIPF 63 (155)
T ss_pred CEEEEEEeccCCccccCH---HHHHHHHh--cCCCCEEEEEechhcCCHHH-----------HHHHHHHHHhhCC-ceEE
Confidence 689999999998766542 332 222 23689999999999864321 1111223333333 4789
Q ss_pred EeccCCCCCHHHHHHHHHHHHh
Q 031934 99 ECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 99 ~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
.+||+++.|++++.+.+.+...
T Consensus 64 ~vSa~~~~gi~~L~~~i~~~~~ 85 (155)
T cd01849 64 KISATNGQGIEKKESAFTKQTN 85 (155)
T ss_pred EEeccCCcChhhHHHHHHHHhH
Confidence 9999999999999999877643
No 257
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.77 E-value=8.3e-09 Score=84.86 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=64.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
+||||+++|.......+..+|++++|+|++....-+.. +....+... ...|++++.||+|+.+.... ....
T Consensus 109 iDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~~------~~~~ 179 (632)
T PRK05506 109 ADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQE------VFDE 179 (632)
T ss_pred EECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchhH------HHHH
Confidence 69999999876555678899999999999865433221 111122222 23578999999998742110 0000
Q ss_pred CHHHHHHHHHHcCC--cEEEEeccCCCCCHHH
Q 031934 81 TTAQGEELRKQIGA--SYYIECSSKTQQNVKA 110 (150)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 110 (150)
...++..+...+++ .+++++||++|.|+.+
T Consensus 180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 12333344455554 3589999999999874
No 258
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.76 E-value=4.3e-08 Score=67.96 Aligned_cols=90 Identities=20% Similarity=0.120 Sum_probs=62.1
Q ss_pred cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH
Q 031934 12 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 91 (150)
Q Consensus 12 l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (150)
.....+++||++++|+|++++.+..+. .+...+ .+.|+++|.||+|+.+.. ......++.+.
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~------------~~~~~~~~~~~ 73 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPK------------KTKKWLKYFES 73 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChH------------HHHHHHHHHHh
Confidence 345578899999999999887654332 232222 357999999999985321 11222233333
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 92 IGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 92 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
.+ ..++.+||+++.|++++...+...+.
T Consensus 74 ~~-~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 KG-EKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred cC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 34 37899999999999999999988764
No 259
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.73 E-value=2.7e-08 Score=82.63 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=50.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|||||+.+|......+++.+|++++|+|+++....+.. .+...+... ++|+++++||+|+...
T Consensus 80 iDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 80 IDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGA 142 (689)
T ss_pred EECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence 79999999988888899999999999999987666543 333344432 6899999999998753
No 260
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.72 E-value=8.3e-08 Score=72.81 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=41.9
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHH-HHHHHHhCCC
Q 031934 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD-AAIKVVIKPP 123 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~-~l~~~~~~~~ 123 (150)
.+|+|+|+||.|+.... +....+....+..+++.+||+.+.++.++.+ .+++++.+.+
T Consensus 214 ~KPvI~VlNK~Dl~~~~--------------~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 214 SKPMVIAANKADIPDAE--------------NNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred CCcEEEEEEHHHccChH--------------HHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 37999999999975321 1111222344445899999999999999998 5999887643
No 261
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.71 E-value=5.3e-08 Score=75.99 Aligned_cols=100 Identities=18% Similarity=0.208 Sum_probs=72.0
Q ss_pred CCCCccccccccc--------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031934 2 NVIGQEDYNRLRP--------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 73 (150)
Q Consensus 2 Dt~G~e~~~~l~~--------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 73 (150)
||||..+-....+ ..+++||.+++|+|.+.+.+-.+. ..+. ....+.|+++|.||.|+......
T Consensus 271 DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~~--- 342 (454)
T COG0486 271 DTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIEL--- 342 (454)
T ss_pred ecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhccccccc---
Confidence 8999877665442 367899999999999997444442 2333 22347999999999999875421
Q ss_pred CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 74 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
... +..+-.+++.+||+++.|++.+.+.+.+.+...
T Consensus 343 ---------~~~----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 343 ---------ESE----KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ---------chh----hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 111 112222689999999999999999999888655
No 262
>PRK12739 elongation factor G; Reviewed
Probab=98.69 E-value=9.1e-08 Score=79.53 Aligned_cols=62 Identities=24% Similarity=0.263 Sum_probs=49.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||||+.+|......+++.+|++|+|+|+.+....+.. .....+... ++|+|++.||+|+..
T Consensus 78 iDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 78 IDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIG 139 (691)
T ss_pred EcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence 69999999988888899999999999999987655543 344444432 689999999999874
No 263
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.67 E-value=5.5e-08 Score=76.99 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=64.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhh---H---HHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccc--cccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y---ENVLKKWIPELQHYSPGVP-VVLVGTKLDLRED--KHYL 71 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s---~---~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~--~~~~ 71 (150)
.||||+++|.......+..+|++++|+|++.... + ....+.| ..+... ++| +|++.||.|.... ...
T Consensus 90 IDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~~--gi~~iiv~vNKmD~~~~~~~~~- 165 (446)
T PTZ00141 90 IDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFTL--GVKQMIVCINKMDDKTVNYSQE- 165 (446)
T ss_pred EECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHHc--CCCeEEEEEEccccccchhhHH-
Confidence 3999999998877778899999999999987421 0 0110222 222222 566 6799999995321 000
Q ss_pred cCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 031934 72 ADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA 110 (150)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 110 (150)
.-.....++..+....++ .+++++||.+|.|+.+
T Consensus 166 -----~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 166 -----RYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred -----HHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 000133455555555443 4799999999999864
No 264
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.64 E-value=1.5e-07 Score=72.22 Aligned_cols=120 Identities=15% Similarity=0.205 Sum_probs=77.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCccccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~ 68 (150)
||++||..++..|..++.+++++|+|.|+++- ..+.+.+..+ +.+-.. ..++|++|++||.|+....
T Consensus 189 ~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f-~~l~~~~~~~~~piil~~NK~D~~~~K 267 (342)
T smart00275 189 FDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLF-ESICNSRWFANTSIILFLNKIDLFEEK 267 (342)
T ss_pred EecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHH-HHHHcCccccCCcEEEEEecHHhHHHH
Confidence 89999999999999999999999999999972 3455543333 333322 2579999999999986543
Q ss_pred cc---cc---CCCCCCccCHHHHHHH-----HHHc-----CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 69 HY---LA---DHPGLVPVTTAQGEEL-----RKQI-----GASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 69 ~~---~~---~~~~~~~v~~~~~~~~-----~~~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
.. .. .+....+ ....+..+ .... .......++|.+-.++..+|+.+...++..
T Consensus 268 l~~~~l~~~fp~y~g~~-~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 268 IKKVPLVDYFPDYKGPN-DYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred hCCCchhccCCCCCCCC-CHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 21 00 0111111 22222222 1111 112456788999999999999988887753
No 265
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.64 E-value=2.5e-07 Score=65.54 Aligned_cols=115 Identities=14% Similarity=0.083 Sum_probs=67.7
Q ss_pred CCCCCcccccc-----cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031934 1 MNVIGQEDYNR-----LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 1 wDt~G~e~~~~-----l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|||||..+... +....+.++|+++++.|. .. +-.+ ..|++.+.+. +.|+++|+||+|+...........
T Consensus 57 ~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-~~-~~~d--~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~ 130 (197)
T cd04104 57 WDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-RF-SSND--VKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPR 130 (197)
T ss_pred EeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-CC-CHHH--HHHHHHHHHh--CCCEEEEEecccchhhhhhccccc
Confidence 89999764322 223346789998888442 22 2222 4566666664 689999999999854321100000
Q ss_pred C-CCccCHHHHH----HHHHHc--CCcEEEEeccC--CCCCHHHHHHHHHHHHhC
Q 031934 76 G-LVPVTTAQGE----ELRKQI--GASYYIECSSK--TQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 76 ~-~~~v~~~~~~----~~~~~~--~~~~~~~~Sa~--~~~~i~~~~~~l~~~~~~ 121 (150)
. ..+...++.+ ...... ...++|.+|+. .+.++..+.+.+...+..
T Consensus 131 ~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 131 SFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 0 0011112222 222222 23478999998 578999999999988875
No 266
>COG2262 HflX GTPases [General function prediction only]
Probab=98.60 E-value=5.7e-07 Score=69.32 Aligned_cols=88 Identities=20% Similarity=0.241 Sum_probs=65.9
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 031934 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 95 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 95 (150)
...||+++.|.|+++|...+.+ ..-...+.+.. .+.|+|+|.||+|+..+.. ..... .... .
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--------------~~~~~-~~~~-~ 331 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE--------------ILAEL-ERGS-P 331 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh--------------hhhhh-hhcC-C
Confidence 4579999999999999777776 66666666653 4799999999999775421 11111 1121 1
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 96 YYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 96 ~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
..+.+||+++.|++.+.+.|...+..
T Consensus 332 ~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 332 NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 57899999999999999999998864
No 267
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.58 E-value=3.1e-07 Score=68.81 Aligned_cols=89 Identities=22% Similarity=0.181 Sum_probs=62.6
Q ss_pred cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC
Q 031934 14 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 93 (150)
Q Consensus 14 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (150)
...+..||++|+|.|+.++.+.+.. .+...+ .+.|+++|.||+|+.+.. .......+.+..+
T Consensus 19 ~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~----~~kp~iiVlNK~DL~~~~------------~~~~~~~~~~~~~ 80 (287)
T PRK09563 19 KENLKLVDVVIEVLDARIPLSSENP--MIDKII----GNKPRLLILNKSDLADPE------------VTKKWIEYFEEQG 80 (287)
T ss_pred HHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh----CCCCEEEEEEchhcCCHH------------HHHHHHHHHHHcC
Confidence 4468899999999999887665432 232222 268999999999985421 1122233333445
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 94 ASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 94 ~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
. +++.+||+++.|+.++.+.+...+.+
T Consensus 81 ~-~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 81 I-KALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred C-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 4 78999999999999999998887754
No 268
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.58 E-value=1.2e-07 Score=61.81 Aligned_cols=83 Identities=23% Similarity=0.177 Sum_probs=65.7
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 95 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 95 (150)
...++|.+++|-.++++.+.-.- .+... ...|+|-|.+|.|+.++. ..+....|...-|..
T Consensus 61 t~~dadvi~~v~~and~~s~f~p------~f~~~-~~k~vIgvVTK~DLaed~------------dI~~~~~~L~eaGa~ 121 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPP------GFLDI-GVKKVIGVVTKADLAEDA------------DISLVKRWLREAGAE 121 (148)
T ss_pred HhhccceeeeeecccCccccCCc------ccccc-cccceEEEEecccccchH------------hHHHHHHHHHHcCCc
Confidence 46689999999999998765432 22222 246799999999998643 557777888888888
Q ss_pred EEEEeccCCCCCHHHHHHHHHH
Q 031934 96 YYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 96 ~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
++|++|+.++.|+++++..|..
T Consensus 122 ~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 122 PIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ceEEEeccCcccHHHHHHHHHh
Confidence 9999999999999999998864
No 269
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=2.3e-07 Score=76.02 Aligned_cols=131 Identities=13% Similarity=0.159 Sum_probs=80.3
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc-----ccc---
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED-----KHY--- 70 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~-----~~~--- 70 (150)
||||+|.|..++.....-||.+|+|.|+.. +.+.+.+ +.++. .+.|+|+..||+|..=. ...
T Consensus 546 dtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~ 618 (1064)
T KOG1144|consen 546 DTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVE 618 (1064)
T ss_pred cCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH-----HHHHh--cCCCeEEeehhhhhhcccccCCCchHHH
Confidence 999999999999999999999999999996 4444443 22222 36899999999996311 000
Q ss_pred -ccCCC-----CCCccCHHHHHHHHHH-c------------CCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhhc
Q 031934 71 -LADHP-----GLVPVTTAQGEELRKQ-I------------GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKK 131 (150)
Q Consensus 71 -~~~~~-----~~~~v~~~~~~~~~~~-~------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 131 (150)
..++. +...-....+.+|+.+ + ....++++||.+|+||.+++-.|+......+..+ ..-.
T Consensus 619 ~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k-l~y~ 697 (1064)
T KOG1144|consen 619 ALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK-LAYV 697 (1064)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH-Hhhh
Confidence 00000 0000000111122211 0 1134689999999999999999998776443221 1233
Q ss_pred cCCCceeee
Q 031934 132 KQRGCLLNV 140 (150)
Q Consensus 132 ~~~~c~~~~ 140 (150)
..-.|++|.
T Consensus 698 ~ev~cTVlE 706 (1064)
T KOG1144|consen 698 DEVQCTVLE 706 (1064)
T ss_pred hheeeEEEE
Confidence 355677763
No 270
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.56 E-value=2e-07 Score=69.11 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=49.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|||||+.+|......+++.+|++++|+|+++....... ..| ..+.. .++|+++++||+|+...
T Consensus 69 iDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~--~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 69 IDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADE--AGIPRIIFINKMDRERA 131 (268)
T ss_pred EECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEECCccCCC
Confidence 79999999988888899999999999999987655432 333 23333 26899999999998754
No 271
>PRK13796 GTPase YqeH; Provisional
Probab=98.56 E-value=3.3e-07 Score=70.90 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=59.2
Q ss_pred cCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHH----HHHHHHc
Q 031934 18 RGAD-VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG----EELRKQI 92 (150)
Q Consensus 18 ~~ad-~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~ 92 (150)
.+++ .+++|+|+.|.. ..|.+.+.+...+.|+++|+||+|+..... ..+.+ ..+++..
T Consensus 67 ~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~~-----------~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKSV-----------KKNKVKNWLRQEAKEL 129 (365)
T ss_pred cccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCcc-----------CHHHHHHHHHHHHHhc
Confidence 4455 999999998743 234445555445789999999999965321 22333 3345555
Q ss_pred CCc--EEEEeccCCCCCHHHHHHHHHHH
Q 031934 93 GAS--YYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 93 ~~~--~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
++. .++.+||+++.|++++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 642 58999999999999999999765
No 272
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.55 E-value=3.1e-07 Score=66.69 Aligned_cols=116 Identities=18% Similarity=0.292 Sum_probs=75.2
Q ss_pred CCCCCcccccc-----cccccccCCcEEEEEEeCCChhhHHHH--HHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031934 1 MNVIGQEDYNR-----LRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 73 (150)
Q Consensus 1 wDt~G~e~~~~-----l~~~~~~~ad~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 73 (150)
||.|||..+-. .....++++.++|+|+|+.+.+-.+++ +...+..+.+..|++.+-+...|.|+..+..-..
T Consensus 53 wD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~- 131 (232)
T PF04670_consen 53 WDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREE- 131 (232)
T ss_dssp EEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHH-
T ss_pred EEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHH-
Confidence 99999986644 346689999999999999954433333 1445556667778999999999999875432100
Q ss_pred CCCCCccCHHHHHHHHHHcC---CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 74 HPGLVPVTTAQGEELRKQIG---ASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
...-..+.+...+...+ + .++.+|.-+ ..+.+++-.++..++..
T Consensus 132 ---~~~~~~~~i~~~~~~~~~~~~-~~~~TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 132 ---IFRDIQQRIRDELEDLGIEDI-TFFLTSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp ---HHHHHHHHHHHHHHHTT-TSE-EEEEE-TTS-THHHHHHHHHHHTTSTT
T ss_pred ---HHHHHHHHHHHHhhhccccce-EEEeccCcC-cHHHHHHHHHHHHHccc
Confidence 00002234445555555 4 788888887 79999999999988754
No 273
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.55 E-value=6.5e-07 Score=67.01 Aligned_cols=87 Identities=17% Similarity=0.339 Sum_probs=65.5
Q ss_pred ccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHH
Q 031934 17 YRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 90 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (150)
+..+...++|.|++.+ ..++.+ +.+..++..+. .+.|.++|+||+|+.+.. ...+..+++
T Consensus 272 iER~~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~ 337 (366)
T KOG1489|consen 272 IERCKGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAK 337 (366)
T ss_pred HHhhceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHH
Confidence 4478999999999998 777776 55555665554 479999999999986432 122456666
Q ss_pred HcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 91 QIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 91 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
...-..++++||+.+++++++++.|-.
T Consensus 338 ~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 338 RLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HcCCCcEEEeeeccccchHHHHHHHhh
Confidence 665435899999999999999987654
No 274
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.50 E-value=3.8e-07 Score=69.16 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=68.4
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT 81 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~ 81 (150)
||||||.|....-..-..||++|+++|+...---+ .+-...|.....=..+++..||+||.+-... .=+-.
T Consensus 92 DTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~Q---TrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~------~F~~I 162 (431)
T COG2895 92 DTPGHEQYTRNMATGASTADLAILLVDARKGVLEQ---TRRHSFIASLLGIRHVVVAVNKMDLVDYSEE------VFEAI 162 (431)
T ss_pred cCCcHHHHhhhhhcccccccEEEEEEecchhhHHH---hHHHHHHHHHhCCcEEEEEEeeecccccCHH------HHHHH
Confidence 99999999998877888999999999996532111 1222233332223568999999999875431 00013
Q ss_pred HHHHHHHHHHcCC--cEEEEeccCCCCCHHH
Q 031934 82 TAQGEELRKQIGA--SYYIECSSKTQQNVKA 110 (150)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 110 (150)
..+...++..+++ ..++++||..|.||-.
T Consensus 163 ~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 163 VADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 3456677888775 3589999999998753
No 275
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.48 E-value=1.2e-07 Score=69.12 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=59.1
Q ss_pred CCCCCcccccccccccc--------cCCcEEEEEEeCCChhhHHHHHHHHHHHHh-hhCCCCCEEEEeeCCCcccccccc
Q 031934 1 MNVIGQEDYNRLRPLSY--------RGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDKHYL 71 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~--------~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~-~~~~~~piilv~nK~D~~~~~~~~ 71 (150)
.|||||.++-..+...- ...-+++++.|..-..+.......++-... ...-+.|.|.|.||+|+.+.....
T Consensus 96 ~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~~~~ 175 (238)
T PF03029_consen 96 FDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSKYLEF 175 (238)
T ss_dssp EE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-HHHHH
T ss_pred EeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccchhHH
Confidence 49999999877665433 456799999998744332222122222222 111279999999999998722000
Q ss_pred c----CCC--------CCCccCHHHHHHHHHHcCCc-EEEEeccCCCCCHHHHHHHHHHHH
Q 031934 72 A----DHP--------GLVPVTTAQGEELRKQIGAS-YYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 72 ~----~~~--------~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
. ... ....-....+..+...++.. .++++|+.+++++.+++..+-+.+
T Consensus 176 ~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 176 ILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 0 000 00000112223333344555 799999999999999998876543
No 276
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=7.6e-07 Score=66.88 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=73.5
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|.||||-.-...-+.-.=.|++++|++.+. |++-+++ -. + +|. .-..+|+|-||+|+...+...
T Consensus 92 DaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl-~A-l-eIi---gik~iiIvQNKIDlV~~E~Al------ 159 (415)
T COG5257 92 DAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL-MA-L-EII---GIKNIIIVQNKIDLVSRERAL------ 159 (415)
T ss_pred eCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH-HH-H-hhh---ccceEEEEecccceecHHHHH------
Confidence 788888654433334444699999999996 5666665 11 1 222 236799999999998765420
Q ss_pred CccCHHHHHHHHHHc---CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 78 VPVTTAQGEELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
...+++.+|.+.. + .|++++||..+.||+.+++.+.+.+..+.
T Consensus 160 --E~y~qIk~FvkGt~Ae~-aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 160 --ENYEQIKEFVKGTVAEN-APIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred --HHHHHHHHHhcccccCC-CceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 1223444444332 3 48999999999999999999999998764
No 277
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.43 E-value=5.8e-07 Score=67.05 Aligned_cols=105 Identities=15% Similarity=0.132 Sum_probs=64.3
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc-c----CCCCCCccCHHHHHHHH
Q 031934 15 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL-A----DHPGLVPVTTAQGEELR 89 (150)
Q Consensus 15 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~-~----~~~~~~~v~~~~~~~~~ 89 (150)
..+..||++++|+|++++...-+ ...+..+..+ ..+|-++|.||.|........ . -.+.......-++++-.
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f 227 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF 227 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence 35678999999999997544433 3444444443 468999999999976543210 0 00000000011111111
Q ss_pred HHc-------------CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 90 KQI-------------GASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 90 ~~~-------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
... ++..+|.+||++|.||+++-+.|+.+....
T Consensus 228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 111 123489999999999999999999988643
No 278
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.41 E-value=2.9e-06 Score=59.81 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=70.9
Q ss_pred cccccccccccccCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCH
Q 031934 6 QEDYNRLRPLSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT 82 (150)
Q Consensus 6 ~e~~~~l~~~~~~~a---d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~ 82 (150)
+|.+..+...|++.. .++++++|+..+..-.+. +.++-+... ++|+++|+||+|...... ..
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~-----------~~ 154 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSE-----------RN 154 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhH-----------HH
Confidence 667777778888763 589999999987766553 444444443 799999999999887543 22
Q ss_pred HHHHHHHHHc----CCcE-EEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 83 AQGEELRKQI----GASY-YIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 83 ~~~~~~~~~~----~~~~-~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
......++.. ...+ ++..|+..+.|++++...|...+..
T Consensus 155 k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 155 KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 3333444333 2211 7788999999999999999887653
No 279
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.39 E-value=2.6e-06 Score=66.84 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=77.7
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT 81 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~ 81 (150)
|||||-+|..-.+..++-.|+++++.|+....--+-- --..+.+.. +.+.|+|.||+|.+..++. +|.
T Consensus 74 DTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTr-FVlkKAl~~---gL~PIVVvNKiDrp~Arp~--------~Vv 141 (603)
T COG1217 74 DTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTR-FVLKKALAL---GLKPIVVINKIDRPDARPD--------EVV 141 (603)
T ss_pred cCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchh-hhHHHHHHc---CCCcEEEEeCCCCCCCCHH--------HHH
Confidence 9999999999999999999999999999985544321 112223332 6788899999998876542 222
Q ss_pred HHHHHHHHHH-------cCCcEEEEeccCCC----------CCHHHHHHHHHHHHhCCC
Q 031934 82 TAQGEELRKQ-------IGASYYIECSSKTQ----------QNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 82 ~~~~~~~~~~-------~~~~~~~~~Sa~~~----------~~i~~~~~~l~~~~~~~~ 123 (150)
.+...+.-. +.+ |++..|+++| .+...+|+.+++.+..|.
T Consensus 142 -d~vfDLf~~L~A~deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 142 -DEVFDLFVELGATDEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred -HHHHHHHHHhCCChhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 333333322 344 7888999887 368899999999988765
No 280
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.33 E-value=4e-06 Score=63.41 Aligned_cols=96 Identities=19% Similarity=0.255 Sum_probs=67.2
Q ss_pred ccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHH
Q 031934 17 YRGADVFVLAFSLVSRA---SYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 90 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~---s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (150)
+..+.+.+.|+|++..+ ..++. ..+..++..+. .+.|.++|+||+|+...... .......+.+
T Consensus 235 IERt~vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~----------~~~~~~~l~~ 303 (369)
T COG0536 235 IERTRVLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE----------LEELKKALAE 303 (369)
T ss_pred HHhhheeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHHH----------HHHHHHHHHH
Confidence 34688999999999654 35554 56666666665 47999999999996654321 2233334444
Q ss_pred HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 91 QIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 91 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
..++..++.+||.++.|++++...+...+.+..
T Consensus 304 ~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 304 ALGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred hcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 555533334999999999999999998887653
No 281
>PRK01889 GTPase RsgA; Reviewed
Probab=98.30 E-value=4.8e-06 Score=64.25 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=58.6
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 031934 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 96 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (150)
..++|.+++|+++..+-....+ +.++..+... ++|.++|.||+|+.+.... .......+ ..+. +
T Consensus 110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~~~----------~~~~~~~~--~~g~-~ 173 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDAEE----------KIAEVEAL--APGV-P 173 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCHHH----------HHHHHHHh--CCCC-c
Confidence 5789999999999754444444 6776665543 7888999999999753110 11222222 3344 8
Q ss_pred EEEeccCCCCCHHHHHHHHH
Q 031934 97 YIECSSKTQQNVKAVFDAAI 116 (150)
Q Consensus 97 ~~~~Sa~~~~~i~~~~~~l~ 116 (150)
++.+|++++.|++++...+.
T Consensus 174 Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 174 VLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred EEEEECCCCccHHHHHHHhh
Confidence 89999999999999888874
No 282
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=4.7e-06 Score=64.86 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=73.6
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|+||+++|-...-..+...|.+++|.|.++ +.+.+.+ .+.....-...++|.||+|..+...
T Consensus 56 Dvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL------~iLdllgi~~giivltk~D~~d~~r--------- 120 (447)
T COG3276 56 DVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHL------LILDLLGIKNGIIVLTKADRVDEAR--------- 120 (447)
T ss_pred eCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHH------HHHHhcCCCceEEEEeccccccHHH---------
Confidence 889999987755566778999999999964 5666665 2222233345799999999886532
Q ss_pred ccCHHHHHHHHHH--cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 79 PVTTAQGEELRKQ--IGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 79 ~v~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
..+...++... +...+++.+|++++.||+++-+.|....-
T Consensus 121 --~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 121 --IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred --HHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 22333333333 33458899999999999999999998884
No 283
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.26 E-value=1.5e-06 Score=60.78 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=42.2
Q ss_pred CCCCcccccc-cccc--cccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCccccc
Q 031934 2 NVIGQEDYNR-LRPL--SYRGADVFVLAFSLVS-RASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 2 Dt~G~e~~~~-l~~~--~~~~ad~~i~v~d~~~-~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~D~~~~~ 68 (150)
|+||+++.+. +... +...+.++|||.|.+. +....++-+.++..+... ....|+++++||.|+....
T Consensus 55 D~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 55 DIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred ECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 8999999876 3333 5788999999999984 444555423333333222 2469999999999987654
No 284
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.25 E-value=5.1e-06 Score=59.07 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=54.2
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCE--EEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH-cCCcE
Q 031934 20 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV--VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-IGASY 96 (150)
Q Consensus 20 ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi--ilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~ 96 (150)
++.+|.|+|+.+..+... .+.. ++.. ++++||+|+...... .........+. ....+
T Consensus 113 ~~~~i~vvD~~~~~~~~~---~~~~-------qi~~ad~~~~~k~d~~~~~~~----------~~~~~~~~~~~~~~~~~ 172 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR---KGGP-------GITRSDLLVINKIDLAPMVGA----------DLGVMERDAKKMRGEKP 172 (199)
T ss_pred hCcEEEEEEcchhhhhhh---hhHh-------HhhhccEEEEEhhhccccccc----------cHHHHHHHHHHhCCCCC
Confidence 688999999987655321 1111 2334 889999999742111 23333333333 22358
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHh
Q 031934 97 YIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 97 ~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
++++||++|+|++++|+.+.+...
T Consensus 173 i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 173 FIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999987654
No 285
>PRK00007 elongation factor G; Reviewed
Probab=98.23 E-value=3.4e-06 Score=70.31 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=60.7
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT 81 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~ 81 (150)
||||+.+|..-....++.+|++++|+|+......+.. ..+..+.+. +.|+|++.||+|+.... .
T Consensus 81 DTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~~~------------~ 144 (693)
T PRK00007 81 DTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTGAD------------F 144 (693)
T ss_pred eCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCCCC------------H
Confidence 9999999877667788999999999999877665553 333344433 68999999999987543 2
Q ss_pred HHHHHHHHHHcCC---cEEEEeccCCC
Q 031934 82 TAQGEELRKQIGA---SYYIECSSKTQ 105 (150)
Q Consensus 82 ~~~~~~~~~~~~~---~~~~~~Sa~~~ 105 (150)
......+.+.++. ...+++|+.++
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 145 YRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 2333344444443 34566777665
No 286
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.20 E-value=1.1e-06 Score=73.56 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=47.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||||+.+|......+++.+|++|+|+|+.+....+.. ..|. .... .+.|+++++||+|...
T Consensus 91 iDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~-~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 91 IDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLR-QALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred EeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHH-HHHH--cCCCEEEEEEChhccc
Confidence 79999999988888899999999999999885444332 2232 2222 3678999999999863
No 287
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.15 E-value=7.7e-06 Score=68.57 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=47.2
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
.||||+.+|.......++.+|++|+|+|+......+.. .-|. ...+. +.|+|++.||+|+..
T Consensus 92 iDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~-~~~~~--~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 92 IDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLR-QALRE--RVKPVLFINKVDRLI 153 (731)
T ss_pred EcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHH-HHHHc--CCCeEEEEECchhhc
Confidence 39999999988888899999999999999886554432 3333 32222 578899999999763
No 288
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.15 E-value=1.2e-05 Score=61.47 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=59.7
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT 81 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~ 81 (150)
||+|...-.. .....||.++++.+.......+.. ...+.+ ..-++|+||+|+.+.... .-.
T Consensus 155 eT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~----k~gi~E----~aDIiVVNKaDl~~~~~a--------~~~ 215 (332)
T PRK09435 155 ETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGI----KKGIME----LADLIVINKADGDNKTAA--------RRA 215 (332)
T ss_pred ECCCCccchh---HHHHhCCEEEEEecCCchHHHHHH----Hhhhhh----hhheEEeehhcccchhHH--------HHH
Confidence 5666542111 145679999999764444444332 222332 334899999998754321 001
Q ss_pred HHHHHHHHHHc-----CC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 82 TAQGEELRKQI-----GA-SYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 82 ~~~~~~~~~~~-----~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
..+........ ++ .+++.+||+++.|++++++.+.+.+.
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 12222222211 12 48999999999999999999998764
No 289
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.13 E-value=1.1e-05 Score=64.69 Aligned_cols=96 Identities=24% Similarity=0.272 Sum_probs=73.9
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031934 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
..+|++.++||.+++.+|... ...++.... ....|+++|++|+|+.+...- ..-+...+++++++.+.
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~-a~v~~~~~~-~~~~Pc~~va~K~dlDe~~Q~----------~~iqpde~~~~~~i~~P 561 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYL-AEVYNKYFD-LYKIPCLMVATKADLDEVPQR----------YSIQPDEFCRQLGLPPP 561 (625)
T ss_pred ceeeeEEEecccCCchHHHHH-HHHHHHhhh-ccCCceEEEeeccccchhhhc----------cCCChHHHHHhcCCCCC
Confidence 568999999999999999987 444433322 257999999999999775432 22223789999999888
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCCCcch
Q 031934 98 IECSSKTQQNVKAVFDAAIKVVIKPPQKQ 126 (150)
Q Consensus 98 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 126 (150)
..+|.+.... .++|..|+.....|+.+.
T Consensus 562 ~~~S~~~~~s-~~lf~kL~~~A~~Ph~~~ 589 (625)
T KOG1707|consen 562 IHISSKTLSS-NELFIKLATMAQYPHIPR 589 (625)
T ss_pred eeeccCCCCC-chHHHHHHHhhhCCCccc
Confidence 9999997555 999999999998887433
No 290
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=7.6e-06 Score=63.30 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=67.7
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA----------SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 70 (150)
.|+||+.+|-...-.....||++|||.|+.+.+ +.+++ .+.+...=..+|++.||.|..+-+..
T Consensus 90 iDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~------~La~tlGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 90 IDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA------FLARTLGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred eeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH------HHHHhcCCceEEEEEEcccccccCHH
Confidence 399999999887777889999999999999862 33433 22222223468999999998763211
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHH
Q 031934 71 LADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF 112 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~ 112 (150)
.- +....++..+.+..|+ .+|+++|+..|.|+.+.-
T Consensus 164 -----rf-~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 164 -----RF-EEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred -----HH-HHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 00 0122344446666654 359999999999987643
No 291
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=5.2e-06 Score=56.75 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=52.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~ 67 (150)
+|-.|+-.=+..|..|+..+|++++.+|+-|.+.|.+.. .-+..+.... .++|+++.+||+|....
T Consensus 69 ~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~-~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 69 FDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESK-KELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred EccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHH-HHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 477787777788999999999999999999999998873 3333333322 47999999999998754
No 292
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.08 E-value=4.9e-05 Score=56.96 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=74.4
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHH
Q 031934 7 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 86 (150)
Q Consensus 7 e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~ 86 (150)
++.+.+.+.-+.+.|-.++|+.+.+|+--...+++++-.... .++..+++.||+|+.++... ..++..
T Consensus 67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~~----------~~~~~~ 134 (301)
T COG1162 67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEEA----------AVKELL 134 (301)
T ss_pred cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchHH----------HHHHHH
Confidence 344556666777888889999999887544444777655543 37788888999999986542 114566
Q ss_pred HHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 87 ELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 87 ~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
......+. +.+.+|++++.+++++...+...+
T Consensus 135 ~~y~~~gy-~v~~~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 135 REYEDIGY-PVLFVSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred HHHHhCCe-eEEEecCcCcccHHHHHHHhcCCe
Confidence 67777887 899999999999999998876544
No 293
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=2.9e-05 Score=60.63 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=45.9
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
.|||||++|+.=+-..+.-+|.+++|+|+-....-+-. ++.+--+. .++||+-..||.|..
T Consensus 86 LDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrl--R~iPI~TFiNKlDR~ 146 (528)
T COG4108 86 LDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRL--RDIPIFTFINKLDRE 146 (528)
T ss_pred cCCCCccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhh--cCCceEEEeeccccc
Confidence 49999999988666678889999999999876554443 33222221 389999999999964
No 294
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.02 E-value=2.4e-05 Score=58.96 Aligned_cols=89 Identities=18% Similarity=0.271 Sum_probs=67.3
Q ss_pred CcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031934 20 ADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 20 ad~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
+++++|+||++... +.+.. ..++.++..... .|+++|.||.|..... ..++........+....
T Consensus 248 ~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~~~~~~~~~~~~~~~~~ 313 (346)
T COG1084 248 AGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEE------------KLEEIEASVLEEGGEEP 313 (346)
T ss_pred cCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchh------------HHHHHHHHHHhhccccc
Confidence 68999999999744 56665 678888887776 8999999999988544 33444444555555567
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 98 IECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 98 ~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..+++..+.+++.+-..+.....++
T Consensus 314 ~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 314 LKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred cceeeeehhhHHHHHHHHHHHhhch
Confidence 8899999999998888887775543
No 295
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.01 E-value=3.5e-06 Score=54.56 Aligned_cols=77 Identities=27% Similarity=0.417 Sum_probs=54.7
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHH
Q 031934 11 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 89 (150)
Q Consensus 11 ~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (150)
.+...+++.++++++||+.++..+++.+ |...+.... .+.|.++++||.|+.+... +..+...
T Consensus 38 ~~~~~~~~s~~~~~~v~~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~~--- 101 (124)
T smart00010 38 VYDPTSYESFDVVLQCWRVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEGL--- 101 (124)
T ss_pred hccccccCCCCEEEEEEEccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHHH---
Confidence 3456678899999999999999998753 766665443 4688999999999744321 1322222
Q ss_pred HHcCCcEEEEeccCCCCCHH
Q 031934 90 KQIGASYYIECSSKTQQNVK 109 (150)
Q Consensus 90 ~~~~~~~~~~~Sa~~~~~i~ 109 (150)
+++++|++++.|+.
T Consensus 102 ------~~~~~s~~~~~~~~ 115 (124)
T smart00010 102 ------EFAETSAKTPEEGE 115 (124)
T ss_pred ------HHHHHhCCCcchhh
Confidence 45577888988884
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.00 E-value=5.5e-05 Score=53.98 Aligned_cols=82 Identities=18% Similarity=0.124 Sum_probs=52.0
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC-CcEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYY 97 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 97 (150)
..+..+.|+|..+...... ... .+ ...|.++++||+|+.+.... .........+..+ ..++
T Consensus 123 ~~~~~i~Vvd~~~~d~~~~---~~~-~~----~~~a~iiv~NK~Dl~~~~~~----------~~~~~~~~l~~~~~~~~i 184 (207)
T TIGR00073 123 GEHMRVVLLSVTEGDDKPL---KYP-GM----FKEADLIVINKADLAEAVGF----------DVEKMKADAKKINPEAEI 184 (207)
T ss_pred ccCeEEEEEecCcccchhh---hhH-hH----HhhCCEEEEEHHHccccchh----------hHHHHHHHHHHhCCCCCE
Confidence 3456677888876443211 111 11 14688999999999753211 2233333333332 2489
Q ss_pred EEeccCCCCCHHHHHHHHHHH
Q 031934 98 IECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 98 ~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
+++||+++.|++++|+.+.+.
T Consensus 185 ~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 185 ILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 297
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.00 E-value=9.7e-06 Score=60.48 Aligned_cols=79 Identities=9% Similarity=0.004 Sum_probs=48.5
Q ss_pred cccccccC--CcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHH
Q 031934 12 LRPLSYRG--ADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 88 (150)
Q Consensus 12 l~~~~~~~--ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~ 88 (150)
.+..++.+ +|+++++++.+.. .+..++ ..++.+. ..+|+++|+||+|+...... ......+.+.
T Consensus 105 ~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~--~~lk~l~---~~v~vi~VinK~D~l~~~e~--------~~~k~~i~~~ 171 (276)
T cd01850 105 KRNPRIPDTRVHACLYFIEPTGHGLKPLDI--EFMKRLS---KRVNIIPVIAKADTLTPEEL--------KEFKQRIMED 171 (276)
T ss_pred cccccCCCCceEEEEEEEeCCCCCCCHHHH--HHHHHHh---ccCCEEEEEECCCcCCHHHH--------HHHHHHHHHH
Confidence 33355554 6777777777642 122222 3344443 36899999999998653221 1245677788
Q ss_pred HHHcCCcEEEEeccCC
Q 031934 89 RKQIGASYYIECSSKT 104 (150)
Q Consensus 89 ~~~~~~~~~~~~Sa~~ 104 (150)
+..+++ +++......
T Consensus 172 l~~~~i-~~~~~~~~~ 186 (276)
T cd01850 172 IEEHNI-KIYKFPEDE 186 (276)
T ss_pred HHHcCC-ceECCCCCc
Confidence 888887 787766543
No 298
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.98 E-value=3.3e-05 Score=60.46 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=39.2
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHH-HHHHHHHHHhCC
Q 031934 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA-VFDAAIKVVIKP 122 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-~~~~l~~~~~~~ 122 (150)
.+|+|+|+||.|+.... .....+.+. +...++++||+.+.++.+ +.+.+++++.+.
T Consensus 217 ~KPvI~VlNK~D~~~~~--------------~~l~~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~ 273 (396)
T PRK09602 217 SKPMVIAANKADLPPAE--------------ENIERLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGD 273 (396)
T ss_pred CCCEEEEEEchhcccch--------------HHHHHHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCC
Confidence 48999999999965321 112222222 445799999999999999 777777776553
No 299
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.96 E-value=4e-05 Score=43.28 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=30.6
Q ss_pred CcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031934 20 ADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 20 ad~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D 63 (150)
++++++++|++..- +.++. -.++.+++...++.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 68999999999754 55654 678889999888999999999998
No 300
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=2.4e-05 Score=58.37 Aligned_cols=108 Identities=20% Similarity=0.293 Sum_probs=73.5
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|+||+-+|-...-..-...|+.|+|..++| |.+-++++ ..++. ++| ++++.||+|+.++...
T Consensus 81 DcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larqv--Gvp~ivvflnK~Dmvdd~el------- 146 (394)
T COG0050 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQV--GVPYIVVFLNKVDMVDDEEL------- 146 (394)
T ss_pred cCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhhc--CCcEEEEEEecccccCcHHH-------
Confidence 899999997755555667899999999999 45666651 12222 565 5688899999975431
Q ss_pred CccCHHHHHHHHHHcCC----cEEEEeccCCCC--------CHHHHHHHHHHHHhCCC
Q 031934 78 VPVTTAQGEELRKQIGA----SYYIECSSKTQQ--------NVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~--------~i~~~~~~l~~~~~~~~ 123 (150)
.+...-+...+...|++ .|++.-||...- .|.++++.+-.++..+.
T Consensus 147 lelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe 204 (394)
T COG0050 147 LELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE 204 (394)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence 23455677788888876 246666665432 36777777777776653
No 301
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.89 E-value=5.2e-05 Score=61.99 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=67.5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 98 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 98 (150)
++|++|-|.|+++.+..-.+ .-++.+. +.|++++.|+.|...... ..-+..++.+..|+ |++
T Consensus 81 ~~D~ivnVvDAtnLeRnLyl----tlQLlE~--g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PVv 142 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYL----TLQLLEL--GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PVV 142 (653)
T ss_pred CCCEEEEEcccchHHHHHHH----HHHHHHc--CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CEE
Confidence 47999999999997655433 1133333 789999999999877654 44556677888898 999
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 99 ECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 99 ~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
++||+.|.|++++...+.+....+.
T Consensus 143 ~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 143 PTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred EEEeecCCCHHHHHHHHHHhccccc
Confidence 9999999999999999987665543
No 302
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.89 E-value=2.8e-05 Score=57.44 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=77.7
Q ss_pred CCCCCccc-------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc--c
Q 031934 1 MNVIGQED-------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY--L 71 (150)
Q Consensus 1 wDt~G~e~-------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~--~ 71 (150)
|||||-++ +..+...++...|.++++.+..|+.=--+ ..++..+....-+.|++++.|-+|....... .
T Consensus 92 wDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d--~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~ 169 (296)
T COG3596 92 WDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD--EDFLRDVIILGLDKRVLFVVTQADRAEPGREWDS 169 (296)
T ss_pred ecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC--HHHHHHHHHhccCceeEEEEehhhhhcccccccc
Confidence 99999776 66666778899999999999998763333 2344444444445899999999997654200 0
Q ss_pred cCCCCCCc---cCH---HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 72 ADHPGLVP---VTT---AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 72 ~~~~~~~~---v~~---~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
..+..... -.. +...++++. ..|++.+|...+.|++++...+++.+..
T Consensus 170 ~~~~p~~a~~qfi~~k~~~~~~~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 170 AGHQPSPAIKQFIEEKAEALGRLFQE--VKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHhh--cCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 00000000 011 223344444 3478899999999999999999988863
No 303
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.86 E-value=0.00013 Score=52.81 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=73.1
Q ss_pred CCCCCcccc-----cccccccccCCcEEEEEEeCCChhhHHHH--HHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031934 1 MNVIGQEDY-----NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 73 (150)
Q Consensus 1 wDt~G~e~~-----~~l~~~~~~~ad~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~ 73 (150)
||.+|||.| +.-....+++.+++|+|||+...+-..++ .+.-++.+.++.|+..+.....|.|+......
T Consensus 58 wDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r--- 134 (295)
T KOG3886|consen 58 WDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDAR--- 134 (295)
T ss_pred hccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchH---
Confidence 999999954 23446789999999999999986533333 14445677777788889999999999875431
Q ss_pred CCCCCccCH----HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 74 HPGLVPVTT----AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 74 ~~~~~~v~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
.+.. +....+....++ .++++|.-+ +.+......++..+...+
T Consensus 135 -----~~if~~r~~~l~~~s~~~~~-~~f~TsiwD-etl~KAWS~iv~~lipn~ 181 (295)
T KOG3886|consen 135 -----ELIFQRRKEDLRRLSRPLEC-KCFPTSIWD-ETLYKAWSSIVYNLIPNV 181 (295)
T ss_pred -----HHHHHHHHHHHHHhcccccc-cccccchhh-HHHHHHHHHHHHhhCCCh
Confidence 1111 222233333444 677777664 455556666666555443
No 304
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.85 E-value=1.5e-05 Score=67.81 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=48.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
.||||+.+|.......++.+|++|+|+|+......+.. .-| +.+.. .++|++++.||+|..
T Consensus 103 iDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~-~~~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 103 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred ECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHH-HHHHH--CCCCEEEEEECCccc
Confidence 39999999998888889999999999999987655543 333 33332 268999999999987
No 305
>PTZ00416 elongation factor 2; Provisional
Probab=97.76 E-value=2.3e-05 Score=66.66 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=48.6
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
.||||+.+|..-....++.+|++|+|+|+.+....+.. ...+.+... +.|+|++.||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~--~~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE--TVLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH--HHHHHHHHc--CCCEEEEEEChhhh
Confidence 39999999988788889999999999999986655542 333444432 68999999999987
No 306
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.00014 Score=51.90 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=44.6
Q ss_pred CCCCccccccccccccc---CCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCccccc
Q 031934 2 NVIGQEDYNRLRPLSYR---GADVFVLAFSLVS-RASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~---~ad~~i~v~d~~~-~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~D~~~~~ 68 (150)
|.||+.+.+.-...+++ .+-+++||.|..- +....++-+.++..+... ....|+++.+||.|+....
T Consensus 88 D~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 88 DLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK 161 (238)
T ss_pred eCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence 88999987764455555 7889999999874 334444422333333332 2368999999999986543
No 307
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.63 E-value=0.00034 Score=52.80 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=53.6
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHH----HHHHHHHH
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA----QGEELRKQ 91 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~----~~~~~~~~ 91 (150)
.+..+|.++++-+.. +-+++ ..+...+. ++|.++|.||+|+...... ..... ....+...
T Consensus 144 i~~~aD~i~vv~~~~---~~~el-~~~~~~l~----~~~~ivv~NK~Dl~~~~~~--------~~~~~~~~~~l~~l~~~ 207 (300)
T TIGR00750 144 IANMADTFVVVTIPG---TGDDL-QGIKAGLM----EIADIYVVNKADGEGATNV--------TIARLMLALALEEIRRR 207 (300)
T ss_pred HHHhhceEEEEecCC---ccHHH-HHHHHHHh----hhccEEEEEcccccchhHH--------HHHHHHHHHHHhhcccc
Confidence 456678888885443 33343 34444343 5788999999998754210 00000 01111111
Q ss_pred -cCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 92 -IGA-SYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 92 -~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
.++ .+++++||+++.|++++++.+.+...
T Consensus 208 ~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 208 EDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred ccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 122 26899999999999999999988643
No 308
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.63 E-value=0.00021 Score=51.69 Aligned_cols=92 Identities=17% Similarity=0.086 Sum_probs=53.2
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccccccccCCCCCCcc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHYLADHPGLVPV 80 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~~~~~~~~~~~~~~v 80 (150)
||||.- ..+. ...+.+|++++|+|.+....... ..+...+... +.|. ++|.||+|+.+.... ..-
T Consensus 89 DtPg~~--~~~l-~~ak~aDvVllviDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~-------~~~ 154 (225)
T cd01882 89 ECPNDI--NAMI-DIAKVADLVLLLIDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNKT-------LRK 154 (225)
T ss_pred eCCchH--HHHH-HHHHhcCEEEEEEecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHHH-------HHH
Confidence 777743 1222 23578999999999987555443 2344444432 5775 459999998643210 000
Q ss_pred CHHHHHH-HHH-HcCCcEEEEeccCCCCC
Q 031934 81 TTAQGEE-LRK-QIGASYYIECSSKTQQN 107 (150)
Q Consensus 81 ~~~~~~~-~~~-~~~~~~~~~~Sa~~~~~ 107 (150)
....+.. +.. .....+++.+||++...
T Consensus 155 ~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 155 TKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 1223322 221 23446899999998744
No 309
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.61 E-value=0.00021 Score=49.73 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=30.8
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031934 21 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 21 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|++++|.|+.++.+..+ +.+.+.+.....+.|+|+|.||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence 78999999998754433 2344442211236899999999999653
No 310
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.60 E-value=0.00031 Score=54.38 Aligned_cols=110 Identities=19% Similarity=0.229 Sum_probs=64.6
Q ss_pred CCCCcccccc--cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc-------
Q 031934 2 NVIGQEDYNR--LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA------- 72 (150)
Q Consensus 2 Dt~G~e~~~~--l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~------- 72 (150)
||.|+|.|.+ ++-..=+..|-.+++..+++..+---- +.+--.+. -+.|+|++.||+|+..+.....
T Consensus 207 DtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk-EHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v~~ei~~ 282 (527)
T COG5258 207 DTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK-EHLGIALA---MELPVIVVVTKIDMVPDDRFQGVVEEISA 282 (527)
T ss_pred ecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh-Hhhhhhhh---hcCCEEEEEEecccCcHHHHHHHHHHHHH
Confidence 8999999865 334455578999999999986544321 22211221 2799999999999987643100
Q ss_pred --CCCCCCc-------cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 031934 73 --DHPGLVP-------VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115 (150)
Q Consensus 73 --~~~~~~~-------v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 115 (150)
+-.+..+ .....+.......+..|++.+|+.+++|++-+.+.+
T Consensus 283 ~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 283 LLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 0000000 000111111122235789999999999987655444
No 311
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00023 Score=57.34 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=64.7
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYE---NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 75 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~---s~~---~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~ 75 (150)
|+||+.+|....-.....||.+++|.|++... .|+ .. ++....++. ..-.-+|++.||.|+.+=...
T Consensus 261 DaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQt-rEha~llr~-Lgi~qlivaiNKmD~V~Wsq~----- 333 (603)
T KOG0458|consen 261 DAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQT-REHALLLRS-LGISQLIVAINKMDLVSWSQD----- 333 (603)
T ss_pred cCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCch-HHHHHHHHH-cCcceEEEEeecccccCccHH-----
Confidence 99999999988888888999999999998531 111 11 222222222 223568999999998763221
Q ss_pred CCCccCHHHHHHHH-HHcCC----cEEEEeccCCCCCHHHH
Q 031934 76 GLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQNVKAV 111 (150)
Q Consensus 76 ~~~~v~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~~~ 111 (150)
...+ ....+..+. +..|+ ..|++||+..|+|+...
T Consensus 334 RF~e-Ik~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 334 RFEE-IKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHH-HHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 0011 112223333 44443 26999999999998776
No 312
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00035 Score=53.30 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=73.1
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|+||+-+|-...-..-...|++|+|...+| |++-++++ ..++. .-..+++..||.|+..+.. ..
T Consensus 123 DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlL-----LArQV-GV~~ivvfiNKvD~V~d~e-------~l 189 (449)
T KOG0460|consen 123 DCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLL-----LARQV-GVKHIVVFINKVDLVDDPE-------ML 189 (449)
T ss_pred CCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHH-----HHHHc-CCceEEEEEecccccCCHH-------HH
Confidence 899999998766666677899999999999 45555541 22222 2245788899999986542 23
Q ss_pred ccCHHHHHHHHHHcCC----cEEEEeccC---CCC-------CHHHHHHHHHHHHhCCC
Q 031934 79 PVTTAQGEELRKQIGA----SYYIECSSK---TQQ-------NVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~----~~~~~~Sa~---~~~-------~i~~~~~~l~~~~~~~~ 123 (150)
++..-+++++...+++ .|++.=||+ .+. .|.++++.+-.++..|.
T Consensus 190 eLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~ 248 (449)
T KOG0460|consen 190 ELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE 248 (449)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcc
Confidence 3455577788888875 456665554 342 26677777777776653
No 313
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=7.7e-05 Score=61.08 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=51.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
.|||||-.|..-....++-+|++++|+|+...-+++- +.+++..-+. +.|+.+|.||.|..
T Consensus 202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt--Er~ikhaiq~--~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT--ERIIKHAIQN--RLPIVVVINKVDRL 262 (971)
T ss_pred ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH--HHHHHHHHhc--cCcEEEEEehhHHH
Confidence 4999999999988889999999999999999888875 4555544443 79999999999964
No 314
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.40 E-value=0.0043 Score=47.28 Aligned_cols=97 Identities=22% Similarity=0.305 Sum_probs=69.8
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhh-------------------------------C--------------------
Q 031934 22 VFVLAFSLVSRASYENVLKKWIPELQHY-------------------------------S-------------------- 50 (150)
Q Consensus 22 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~-------------------------------~-------------------- 50 (150)
+||++.|+++|.+.-+-++.|.+-+.++ .
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 7899999999976655568887665543 0
Q ss_pred -----------CCCCEEEEeeCCCcccc----cccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 031934 51 -----------PGVPVVLVGTKLDLRED----KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115 (150)
Q Consensus 51 -----------~~~piilv~nK~D~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 115 (150)
-++|+++|.+|+|.... ..+...| --.....++.||-.+|. ..+.+|++...|++-+...|
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDeh---fdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYi 285 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEH---FDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYI 285 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHH---HHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHH
Confidence 03899999999998432 1110000 00122466788999996 89999999999999999999
Q ss_pred HHHHhCC
Q 031934 116 IKVVIKP 122 (150)
Q Consensus 116 ~~~~~~~ 122 (150)
++.+...
T Consensus 286 vhr~yG~ 292 (473)
T KOG3905|consen 286 VHRSYGF 292 (473)
T ss_pred HHHhcCc
Confidence 9988654
No 315
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.37 E-value=0.0018 Score=45.60 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=68.4
Q ss_pred CCCCCcccccc--------cc---cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCccc
Q 031934 1 MNVIGQEDYNR--------LR---PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~~~~--------l~---~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~ 66 (150)
.||||-.+... +. .....++|++|+|.|+.+ .+-++ ...++.+.+..+ -.++++|.|+.|...
T Consensus 54 iDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 54 IDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred EECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 48999654321 11 123467899999999987 44333 344555555433 268999999999765
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec-----cCCCCCHHHHHHHHHHHHhC
Q 031934 67 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS-----SKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S-----a~~~~~i~~~~~~l~~~~~~ 121 (150)
...... -..-.......+.+..+. .+...+ +..+.++.++++.+.+.+.+
T Consensus 131 ~~~~~~----~~~~~~~~l~~l~~~c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 131 GGTLED----YLENSCEALKRLLEKCGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred CCcHHH----HHHhccHHHHHHHHHhCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 421100 000012455666666664 444443 45678899999999888875
No 316
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00018 Score=59.91 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=50.2
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|||||-+|..-....++-.|++++|+|+......+.. .-| +...+. ++|.+++.||.|....
T Consensus 82 DTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~-rqa~~~--~vp~i~fiNKmDR~~a 143 (697)
T COG0480 82 DTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVW-RQADKY--GVPRILFVNKMDRLGA 143 (697)
T ss_pred CCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHH-HHHhhc--CCCeEEEEECcccccc
Confidence 9999999999999999999999999999987666553 334 333332 7999999999997543
No 317
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00026 Score=56.06 Aligned_cols=108 Identities=17% Similarity=0.086 Sum_probs=65.9
Q ss_pred CCCCccc-ccccc--------cccccCCcEEEEEEeC--CChhhHHHHHHHHHHHHhhhC-------CCCCEEEEeeCCC
Q 031934 2 NVIGQED-YNRLR--------PLSYRGADVFVLAFSL--VSRASYENVLKKWIPELQHYS-------PGVPVVLVGTKLD 63 (150)
Q Consensus 2 Dt~G~e~-~~~l~--------~~~~~~ad~~i~v~d~--~~~~s~~~~~~~~~~~i~~~~-------~~~piilv~nK~D 63 (150)
||||..+ -.... +..+..||++++|+|+ ++..+-..+ .+.+....... ...|++++.||.|
T Consensus 322 DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D 400 (531)
T KOG1191|consen 322 DTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSD 400 (531)
T ss_pred eccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhh
Confidence 8999766 22222 2356789999999999 443333333 34444433221 1379999999999
Q ss_pred cccccccccCCCCCCccCHHHHHHHHHHc---CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 64 LREDKHYLADHPGLVPVTTAQGEELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 64 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+...-.. .......+.... ......++|+++++|++.+.+.+.+...
T Consensus 401 ~~s~~~~----------~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 401 LVSKIPE----------MTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred ccCcccc----------ccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 9876221 111111111111 1224667999999999999999887764
No 318
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00032 Score=52.83 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=71.4
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 77 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~ 77 (150)
|+||++-.-...-..-.=.|++++++..+. |.+-+++ ... ++.+. ..++++-||+|+..+.....
T Consensus 131 DCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL-aav--eiM~L---khiiilQNKiDli~e~~A~e----- 199 (466)
T KOG0466|consen 131 DCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL-AAV--EIMKL---KHIIILQNKIDLIKESQALE----- 199 (466)
T ss_pred cCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH-HHH--HHhhh---ceEEEEechhhhhhHHHHHH-----
Confidence 677777543322222223478888887774 5666665 222 34433 57999999999987654211
Q ss_pred CccCHHHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 78 VPVTTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 78 ~~v~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
..++++.|.+... ..|++++||.-+.||+-+.+.+++++..+.
T Consensus 200 ---q~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 200 ---QHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred ---HHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 2244555555432 248999999999999999999999997654
No 319
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.27 E-value=0.00039 Score=44.73 Aligned_cols=55 Identities=18% Similarity=0.300 Sum_probs=36.2
Q ss_pred CCCCCcccc----------cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 031934 1 MNVIGQEDY----------NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61 (150)
Q Consensus 1 wDt~G~e~~----------~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK 61 (150)
+||||...- ....+. +..+|++++|+|..++..-.. ..+++.++ .+.|+++|.||
T Consensus 52 vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vv~~~~~~~~~~--~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 52 VDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIYVVDASNPITEDD--KNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp EESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEEEEETTSHSHHHH--HHHHHHHH---TTSEEEEEEES
T ss_pred EeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEEEEECCCCCCHHH--HHHHHHHh---cCCCEEEEEcC
Confidence 599995421 122233 378999999999888433222 34555553 47899999998
No 320
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.27 E-value=0.00065 Score=52.15 Aligned_cols=120 Identities=20% Similarity=0.185 Sum_probs=73.8
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChh--hHHH-----H--HHHHHHHHhhhC--CCCCEEEEeeCCCcccccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA--SYEN-----V--LKKWIPELQHYS--PGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~--s~~~-----~--~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~ 69 (150)
+|++||..-+.=|-+.+.+++++|||.+++.-. .+++ . .-.+.+.|-.+. .+.++||..||.|+..+..
T Consensus 200 ~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi 279 (354)
T KOG0082|consen 200 FDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKI 279 (354)
T ss_pred EeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHh
Confidence 599999988888899999999999999998521 1111 1 012233333221 4799999999999876532
Q ss_pred ccc------CCCCCCccCHHHHHHHHH-----H-----cCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 70 YLA------DHPGLVPVTTAQGEELRK-----Q-----IGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 70 ~~~------~~~~~~~v~~~~~~~~~~-----~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
... ...... -..+.+..+.+ . ..+ -...+.|.+-.+|..+|..+...++..
T Consensus 280 ~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~k~i-y~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 280 KKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKDKKI-YVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred ccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccCCcc-eEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 100 011111 11222222211 1 122 345668888999999999999888754
No 321
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.26 E-value=0.0008 Score=53.66 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=67.3
Q ss_pred CcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031934 20 ADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 20 ad~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
..+|+++.|++..- |.... -.++..|+..+.|.|.|+|.||+|+...... .-..+++.+....-+..++
T Consensus 248 raaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~edL--------~~~~~~ll~~~~~~~~v~v 318 (620)
T KOG1490|consen 248 RSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPEDL--------DQKNQELLQTIIDDGNVKV 318 (620)
T ss_pred hhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCcccc--------CHHHHHHHHHHHhccCceE
Confidence 45789999998743 44443 5677788888889999999999998765431 0022233333333332489
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 98 IECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 98 ~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+++|..+.+||.++-...+..++...
T Consensus 319 ~~tS~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 319 VQTSCVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred EEecccchhceeeHHHHHHHHHHHHH
Confidence 99999999999999998888776543
No 322
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0012 Score=50.56 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=64.5
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
|+||+...-...--.-.=-|..++|+|+.... +.+-+ ++.++.. ...++|.||+|...+..- .
T Consensus 76 DCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL---iig~~~c----~klvvvinkid~lpE~qr-------~ 141 (522)
T KOG0461|consen 76 DCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL---IIGELLC----KKLVVVINKIDVLPENQR-------A 141 (522)
T ss_pred eCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhh---hhhhhhc----cceEEEEeccccccchhh-------h
Confidence 67777543222212223347889999998643 44433 2333322 357888899997765320 0
Q ss_pred ccCHHHHHHHHH---Hc---CCcEEEEeccCCC----CCHHHHHHHHHHHHhCCCcch
Q 031934 79 PVTTAQGEELRK---QI---GASYYIECSSKTQ----QNVKAVFDAAIKVVIKPPQKQ 126 (150)
Q Consensus 79 ~v~~~~~~~~~~---~~---~~~~~~~~Sa~~~----~~i~~~~~~l~~~~~~~~~~~ 126 (150)
+-..+...++.+ .. +-.|++++||..| ++|.++.+.|-..+.++....
T Consensus 142 ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~ 199 (522)
T KOG0461|consen 142 SKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE 199 (522)
T ss_pred hHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence 001122222222 22 2268999999999 788888888888888775433
No 323
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.25 E-value=0.0004 Score=55.31 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=56.7
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHH
Q 031934 9 YNRLRPLSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 87 (150)
Q Consensus 9 ~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~ 87 (150)
|+.||+ .+..+|++|.+.|+.+|--|... ++.|+.++. +.+..+|++||.||.... ......+
T Consensus 165 WRQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d---~~K~~~LLvNKaDLl~~~------------qr~aWa~ 228 (562)
T KOG1424|consen 165 WRQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD---PSKANVLLVNKADLLPPE------------QRVAWAE 228 (562)
T ss_pred HHHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccc---cccceEEEEehhhcCCHH------------HHHHHHH
Confidence 444454 46789999999999998766432 244444443 457789999999998654 3456667
Q ss_pred HHHHcCCcEEEEeccCC
Q 031934 88 LRKQIGASYYIECSSKT 104 (150)
Q Consensus 88 ~~~~~~~~~~~~~Sa~~ 104 (150)
+....++ ++++.||..
T Consensus 229 YF~~~ni-~~vf~SA~~ 244 (562)
T KOG1424|consen 229 YFRQNNI-PVVFFSALA 244 (562)
T ss_pred HHHhcCc-eEEEEeccc
Confidence 7888886 888889887
No 324
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.24 E-value=0.00057 Score=52.17 Aligned_cols=90 Identities=24% Similarity=0.167 Sum_probs=61.3
Q ss_pred cccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHH
Q 031934 8 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 87 (150)
Q Consensus 8 ~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~ 87 (150)
++.......+..+|.++-|.|+.+|.+.... .+.+...+.|.++|+||.|+.... ......+
T Consensus 23 k~~~~~~~~~~~~d~vvevvDar~P~~s~~~------~l~~~v~~k~~i~vlNK~DL~~~~------------~~~~W~~ 84 (322)
T COG1161 23 KAKRQLKEVLKSVDVVVEVVDARDPLGTRNP------ELERIVKEKPKLLVLNKADLAPKE------------VTKKWKK 84 (322)
T ss_pred HHHHHHHHhcccCCEEEEEEeccccccccCc------cHHHHHccCCcEEEEehhhcCCHH------------HHHHHHH
Confidence 4455556678899999999999999866543 333333467779999999998653 2334444
Q ss_pred HHHHc-CCcEEEEeccCCCCCHHHHHHHHH
Q 031934 88 LRKQI-GASYYIECSSKTQQNVKAVFDAAI 116 (150)
Q Consensus 88 ~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~ 116 (150)
+.... +. ..+.++++.+.+...+...+.
T Consensus 85 ~~~~~~~~-~~~~v~~~~~~~~~~i~~~~~ 113 (322)
T COG1161 85 YFKKEEGI-KPIFVSAKSRQGGKKIRKALE 113 (322)
T ss_pred HHHhcCCC-ccEEEEeecccCccchHHHHH
Confidence 44444 43 677888888888777775333
No 325
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.20 E-value=0.0012 Score=49.15 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=66.5
Q ss_pred CCCCccc-c--cc---cccccccC--CcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031934 2 NVIGQED-Y--NR---LRPLSYRG--ADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 2 Dt~G~e~-~--~~---l~~~~~~~--ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 70 (150)
|||||-+ | +. ++...+.. .-+++++.|.-. |.+|=.- --|.-.|.- .-..|+|+|.||+|+....-.
T Consensus 122 DTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSN-MlYAcSily-ktklp~ivvfNK~Dv~d~~fa 199 (366)
T KOG1532|consen 122 DTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSN-MLYACSILY-KTKLPFIVVFNKTDVSDSEFA 199 (366)
T ss_pred cCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHH-HHHHHHHHH-hccCCeEEEEecccccccHHH
Confidence 8999875 2 21 22223332 346777777643 4555322 122222221 136999999999998765321
Q ss_pred -------------cc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 71 -------------LA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 71 -------------~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
.+ .+.=..++...+...+-..|+-...+-+||.+|.|.+++|..+-...-
T Consensus 200 ~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 200 LEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred HHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 00 000011123333333444454457889999999999999998877664
No 326
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.09 E-value=0.00067 Score=52.99 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=70.3
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhh-hCCCCCEEEEeeCCCcccccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQH-YSPGVPVVLVGTKLDLREDKH 69 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~~i~~-~~~~~piilv~nK~D~~~~~~ 69 (150)
+|++||...+.-|..++.+++++|+|.++++- ..+.+.+.-|-..... ...+.|+||+.||.|+.....
T Consensus 241 ~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl 320 (389)
T PF00503_consen 241 IDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKL 320 (389)
T ss_dssp EEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHT
T ss_pred ecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHc
Confidence 59999998899999999999999999998741 2233332223222222 125799999999999865432
Q ss_pred cc----c---CCCCCC-ccCHHHHHHHHHH--------c---CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 70 YL----A---DHPGLV-PVTTAQGEELRKQ--------I---GASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 70 ~~----~---~~~~~~-~v~~~~~~~~~~~--------~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.. . .+.... +-....+..+... . ....+..++|.+..++..+|+.+...+
T Consensus 321 ~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 321 KKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp TTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred cCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 10 0 000011 0122333322221 1 111345788888888888888776543
No 327
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.01 E-value=0.011 Score=47.43 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=48.9
Q ss_pred CCEEEEeeCCCcccccccccCCCCCC---ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 53 VPVVLVGTKLDLREDKHYLADHPGLV---PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 53 ~piilv~nK~D~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
+|++||++|+|....-.. .+.... -.....++.+|-.||. .++.+|++...+++-+...|.+.+...+
T Consensus 197 ipi~VV~tksD~~~~Lek--~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h~l~~~~ 267 (472)
T PF05783_consen 197 IPIVVVCTKSDKIETLEK--ETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILHRLYGFP 267 (472)
T ss_pred cceEEEEecccHHHHHhh--hcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHHHhccCC
Confidence 799999999997542100 000001 1344567788888997 8889999999999999999998887654
No 328
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0057 Score=47.50 Aligned_cols=107 Identities=15% Similarity=0.206 Sum_probs=63.5
Q ss_pred CCCCcccccccccccccC--CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc---------
Q 031934 2 NVIGQEDYNRLRPLSYRG--ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY--------- 70 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~--ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~--------- 70 (150)
|-||+.+|....-+.+.+ .|.+++|.+++...+..- ++-+..+.- -++|+.++.+|.|+......
T Consensus 255 DLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~A--L~iPfFvlvtK~Dl~~~~~~~~tv~~l~n 330 (591)
T KOG1143|consen 255 DLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAA--LNIPFFVLVTKMDLVDRQGLKKTVKDLSN 330 (591)
T ss_pred ecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHH--hCCCeEEEEEeeccccchhHHHHHHHHHH
Confidence 789999998866665554 678888888876443322 122222222 27999999999999765211
Q ss_pred ccCCCCCCc----c-CHHHHHHH---HHHcCCcEEEEeccCCCCCHHHHH
Q 031934 71 LADHPGLVP----V-TTAQGEEL---RKQIGASYYIECSSKTQQNVKAVF 112 (150)
Q Consensus 71 ~~~~~~~~~----v-~~~~~~~~---~~~~~~~~~~~~Sa~~~~~i~~~~ 112 (150)
.-...+... | ...++..- ...-++.|+|.+|+.+|+|+.-+-
T Consensus 331 ll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~ 380 (591)
T KOG1143|consen 331 LLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR 380 (591)
T ss_pred HHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence 000001000 0 11222222 333456789999999999986443
No 329
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.90 E-value=0.0011 Score=45.18 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=42.4
Q ss_pred CCCCCcccc----cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 031934 1 MNVIGQEDY----NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 62 (150)
Q Consensus 1 wDt~G~e~~----~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 62 (150)
.||||.... ..++..|+..+|++|+|.++++..+-.+. ..+....... ...+++|.||.
T Consensus 106 vDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 106 VDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred EeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence 389996542 24566788999999999999997766665 6676666654 33488998984
No 330
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.89 E-value=0.0014 Score=48.02 Aligned_cols=53 Identities=17% Similarity=0.101 Sum_probs=36.4
Q ss_pred cccccccC-CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031934 12 LRPLSYRG-ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 12 l~~~~~~~-ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
+...|+++ ++++++|.|++...+-.+. ..+.+.+.. .+.|+++|.||.|....
T Consensus 154 lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~--~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 154 MIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP--QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH--cCCcEEEEEECCCCCCc
Confidence 45568884 5699999998764443333 344444443 26899999999998764
No 331
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.68 E-value=0.0044 Score=46.58 Aligned_cols=56 Identities=11% Similarity=0.017 Sum_probs=39.0
Q ss_pred CCEEEEeeCCCcccccccccCCCCCCccCHHHHH-HHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 53 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 53 ~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
.+-++|.||+|+...... ..+... .+.+.....+++++||++++|++++.++|..+
T Consensus 231 ~ADIVVLNKiDLl~~~~~----------dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNF----------DVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHH----------HHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 567899999999753111 122233 33333334589999999999999999998764
No 332
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.61 E-value=0.0066 Score=49.14 Aligned_cols=98 Identities=21% Similarity=0.360 Sum_probs=72.0
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHH-H
Q 031934 15 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-Q 91 (150)
Q Consensus 15 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 91 (150)
.|...+|++|+||.+.+..+|+.+ +.+...+.... ...|+++++++.-...... ..+......+.+. .
T Consensus 91 Qft~wvdavIfvf~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~--------rv~~da~~r~l~~~~ 161 (749)
T KOG0705|consen 91 QFCQWVDAVVFVFSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKRP--------RVITDDRARQLSAQM 161 (749)
T ss_pred hhhhhccceEEEEEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhcccc--------cccchHHHHHHHHhc
Confidence 456678999999999999999998 77766666433 4789999998755433221 2234444444444 4
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 92 IGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 92 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..+ .+|+.+|.+|-+++..|+.++.++...
T Consensus 162 krc-sy~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 162 KRC-SYYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred Ccc-ceeecchhhhhhHHHHHHHHHHHHHHH
Confidence 555 899999999999999999999877654
No 333
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.57 E-value=0.0066 Score=42.90 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=51.1
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCC--CCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC-CcEE
Q 031934 21 DVFVLAFSLVSRASYENVLKKWIPELQHYSPG--VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYY 97 (150)
Q Consensus 21 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~--~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 97 (150)
+.-|+|+|.+..+.-= ++..|. ..=++|.||.|+...-.. ..+.+..-++..+ -.++
T Consensus 119 ~~~v~VidvteGe~~P----------~K~gP~i~~aDllVInK~DLa~~v~~----------dlevm~~da~~~np~~~i 178 (202)
T COG0378 119 HLRVVVIDVTEGEDIP----------RKGGPGIFKADLLVINKTDLAPYVGA----------DLEVMARDAKEVNPEAPI 178 (202)
T ss_pred ceEEEEEECCCCCCCc----------ccCCCceeEeeEEEEehHHhHHHhCc----------cHHHHHHHHHHhCCCCCE
Confidence 3778888887542110 110111 122688899999875432 4455555555543 3489
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 031934 98 IECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 98 ~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+++|+++|+|++++++.+....
T Consensus 179 i~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 179 IFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EEEeCCCCcCHHHHHHHHHhhc
Confidence 9999999999999998887654
No 334
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.51 E-value=0.014 Score=40.39 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=51.8
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT 81 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~ 81 (150)
|||+... ......+..||.++++...+. .+...+ ..+++.+.+. +.|+.+|.||.|.... .
T Consensus 99 Dtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~~-------------~ 159 (179)
T cd03110 99 DGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDL-ERAVELVRHF--GIPVGVVINKYDLNDE-------------I 159 (179)
T ss_pred ECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCcc-------------h
Confidence 7775432 223346788999999999884 355555 6666666654 5788999999986432 3
Q ss_pred HHHHHHHHHHcCCcEEE
Q 031934 82 TAQGEELRKQIGASYYI 98 (150)
Q Consensus 82 ~~~~~~~~~~~~~~~~~ 98 (150)
..++.++.+.+++ +++
T Consensus 160 ~~~~~~~~~~~~~-~vl 175 (179)
T cd03110 160 AEEIEDYCEEEGI-PIL 175 (179)
T ss_pred HHHHHHHHHHcCC-CeE
Confidence 4566677787776 543
No 335
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.43 E-value=0.0037 Score=48.59 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=50.4
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031934 15 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 94 (150)
Q Consensus 15 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (150)
..+..+|++|.|.|+.||.+-.. ...-+.+.+..++.-.|+|.||+|+.... ..+....+.+..+-
T Consensus 142 kvve~sDVVleVlDARDPlgtR~--~~vE~~V~~~~gnKkLILVLNK~DLVPrE------------v~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 142 KVVEASDVVLEVLDARDPLGTRC--PEVEEAVLQAHGNKKLILVLNKIDLVPRE------------VVEKWLVYLRREGP 207 (435)
T ss_pred HHHhhhheEEEeeeccCCCCCCC--hhHHHHHHhccCCceEEEEeehhccCCHH------------HHHHHHHHHHhhCC
Confidence 34567999999999999976543 23444455555678999999999998654 44556666666664
Q ss_pred cEEEEeccC
Q 031934 95 SYYIECSSK 103 (150)
Q Consensus 95 ~~~~~~Sa~ 103 (150)
.-.|..|..
T Consensus 208 tv~fkast~ 216 (435)
T KOG2484|consen 208 TVAFKASTQ 216 (435)
T ss_pred cceeecccc
Confidence 233444433
No 336
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.015 Score=47.59 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=47.5
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
|||||-+|.--....++--|++++|+|......-+-. .-|.. ..++ ++|.|...||.|...
T Consensus 110 DTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ-~~ry--~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 110 DTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQ-MKRY--NVPRICFINKMDRMG 170 (721)
T ss_pred cCCCceeEEEEehhhhhhccCeEEEEEcccceehhhH-HHHHH-HHhc--CCCeEEEEehhhhcC
Confidence 9999999999888899999999999998876544443 34533 3332 799999999999643
No 337
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.34 E-value=0.0083 Score=44.29 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=52.0
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC---
Q 031934 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--- 93 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--- 93 (150)
..-||.+++|.-+.-.+..+.+ ...+.+ ++=|+|.||.|...... ...++........
T Consensus 140 ~~~aD~~v~v~~Pg~GD~iQ~~----KaGimE----iaDi~vVNKaD~~gA~~-----------~~~~l~~~l~l~~~~~ 200 (266)
T PF03308_consen 140 ADMADTVVLVLVPGLGDEIQAI----KAGIME----IADIFVVNKADRPGADR-----------TVRDLRSMLHLLRERE 200 (266)
T ss_dssp HTTSSEEEEEEESSTCCCCCTB-----TTHHH----H-SEEEEE--SHHHHHH-----------HHHHHHHHHHHCSTSC
T ss_pred HHhcCeEEEEecCCCccHHHHH----hhhhhh----hccEEEEeCCChHHHHH-----------HHHHHHHHHhhccccc
Confidence 3458999999988766655543 222222 33478889999665433 2233333322211
Q ss_pred ---CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 94 ---ASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 94 ---~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
-+|++.+||.++.||+++++.+.+...
T Consensus 201 ~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 201 DGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp TSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 158999999999999999999987553
No 338
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.34 E-value=0.025 Score=44.81 Aligned_cols=85 Identities=13% Similarity=0.177 Sum_probs=55.8
Q ss_pred ccc-CCcEEEEEE-eCC-------ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHH
Q 031934 16 SYR-GADVFVLAF-SLV-------SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 86 (150)
Q Consensus 16 ~~~-~ad~~i~v~-d~~-------~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~ 86 (150)
.+. .+++.|+|. |.+ +....+ .+|+.++++. ++|+++|.|+.|-.... ..+...
T Consensus 140 VI~dhstIgivVtTDgsi~dI~Re~y~~aE---e~~i~eLk~~--~kPfiivlN~~dp~~~e------------t~~l~~ 202 (492)
T TIGR02836 140 VIQEHSTIGVVVTTDGTITDIPREDYVEAE---ERVIEELKEL--NKPFIILLNSTHPYHPE------------TEALRQ 202 (492)
T ss_pred HHHhcCcEEEEEEcCCCccccccccchHHH---HHHHHHHHhc--CCCEEEEEECcCCCCch------------hHHHHH
Confidence 455 789989998 775 333333 5678888775 79999999999933211 334445
Q ss_pred HHHHHcCCcEEEEeccCC--CCCHHHHHHHHHHH
Q 031934 87 ELRKQIGASYYIECSSKT--QQNVKAVFDAAIKV 118 (150)
Q Consensus 87 ~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~~~ 118 (150)
.+...|+. +++.+|+.. ...|..++..+...
T Consensus 203 ~l~eky~v-pvl~v~c~~l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 203 ELEEKYDV-PVLAMDVESMRESDILSVLEEVLYE 235 (492)
T ss_pred HHHHHhCC-ceEEEEHHHcCHHHHHHHHHHHHhc
Confidence 66777886 777776654 45566666655443
No 339
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.13 E-value=0.0071 Score=50.53 Aligned_cols=55 Identities=22% Similarity=0.351 Sum_probs=43.8
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHH---HHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN---VLKKWIPELQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~---~~~~~~~~i~~~~~~~piilv~nK~D 63 (150)
|+|||-+|++......+-+|+++++.|+.....-+- +.+.|.+ +...++|.||+|
T Consensus 78 dspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-------~~~~~lvinkid 135 (887)
T KOG0467|consen 78 DSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-------GLKPILVINKID 135 (887)
T ss_pred cCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-------cCceEEEEehhh
Confidence 999999999999999999999999999987543332 2233433 456889999999
No 340
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.03 E-value=0.04 Score=42.03 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=39.7
Q ss_pred CCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 53 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 53 ~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+|.++|.||+|+... +....+.+.. ..+.+||+.+.|++++.+.+.+.+
T Consensus 240 ~p~l~v~NKiD~~~~---------------e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 240 KPALYVVNKIDLPGL---------------EELERLARKP---NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred eeeEEEEecccccCH---------------HHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhh
Confidence 899999999998752 4444444444 678999999999999999999877
No 341
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=0.21 Score=36.84 Aligned_cols=118 Identities=13% Similarity=0.211 Sum_probs=68.0
Q ss_pred CCCCCcccccc-c--ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHh---hhCCCCCEEEEeeCCCcccccccccCC
Q 031934 1 MNVIGQEDYNR-L--RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ---HYSPGVPVVLVGTKLDLREDKHYLADH 74 (150)
Q Consensus 1 wDt~G~e~~~~-l--~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~---~~~~~~piilv~nK~D~~~~~~~~~~~ 74 (150)
||.|||-.|-. - ..+.++++-+.|+|+|+.+ .+.+.+.++...+. +..+++.+=+..-|.|-.++..-..
T Consensus 80 ~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQd--dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kie-- 155 (347)
T KOG3887|consen 80 WDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQD--DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIE-- 155 (347)
T ss_pred eecCCccccCCCccCHHHHHhccCeEEEEEechH--HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhh--
Confidence 99999986533 1 2457899999999999865 23222234433333 3346788888889999766543100
Q ss_pred CCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHHHHHHHHHhCCCcc
Q 031934 75 PGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 125 (150)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~ 125 (150)
+.+.+. +....-....|. ..|+- .+....+|-+.|..++..++.+-++
T Consensus 156 -tqrdI~-qr~~d~l~d~gle~v~vsf~L-TSIyDHSIfEAFSkvVQkLipqLpt 207 (347)
T KOG3887|consen 156 -TQRDIH-QRTNDELADAGLEKVQVSFYL-TSIYDHSIFEAFSKVVQKLIPQLPT 207 (347)
T ss_pred -hHHHHH-HHhhHHHHhhhhccceEEEEE-eeecchHHHHHHHHHHHHHhhhchh
Confidence 000001 111111122222 13444 4455689999999999888765443
No 342
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.35 E-value=0.17 Score=38.33 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=52.0
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHH---HHHH----
Q 031934 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG---EELR---- 89 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~---~~~~---- 89 (150)
..-+|.+++|.=+--....+. +...+.+ +-=|+|.||.|...... ...++ .+..
T Consensus 162 ~~~aDt~~~v~~pg~GD~~Q~----iK~GimE----iaDi~vINKaD~~~A~~-----------a~r~l~~al~~~~~~~ 222 (323)
T COG1703 162 ANMADTFLVVMIPGAGDDLQG----IKAGIME----IADIIVINKADRKGAEK-----------AARELRSALDLLREVW 222 (323)
T ss_pred hhhcceEEEEecCCCCcHHHH----HHhhhhh----hhheeeEeccChhhHHH-----------HHHHHHHHHHhhcccc
Confidence 345788888876655555544 3334443 23378889999554321 11111 1111
Q ss_pred HHcCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 90 KQIGA-SYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 90 ~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
...++ ++++.+||..+.|++++++.+.....
T Consensus 223 ~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 223 RENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred cccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 11122 47899999999999999999987664
No 343
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=95.25 E-value=0.42 Score=33.30 Aligned_cols=89 Identities=12% Similarity=0.169 Sum_probs=64.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
..|.++|++|.+..-|++.+ +.=+..+.-.. -++ +.++++-....+.- ++...+..+++..|++ |+
T Consensus 64 rIDlIVFvinl~sk~SL~~v-e~SL~~vd~~fflGK-VCfl~t~a~~~~~~----------sv~~~~V~kla~~y~~-pl 130 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSV-EASLSHVDPSFFLGK-VCFLATNAGRESHC----------SVHPNEVRKLAATYNS-PL 130 (176)
T ss_pred eeEEEEEEEecCCcccHHHH-HHHHhhCChhhhccc-eEEEEcCCCccccc----------ccCHHHHHHHHHHhCC-CE
Confidence 46999999999999999887 55555554333 233 44454544433322 2588999999999998 99
Q ss_pred EEeccCCCCCHHHHHHHHHHHHh
Q 031934 98 IECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 98 ~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+.+.-.+..+...+=+.|.+.+.
T Consensus 131 L~~~le~~~~~~~lAqRLL~~lq 153 (176)
T PF11111_consen 131 LFADLENEEGRTSLAQRLLRMLQ 153 (176)
T ss_pred EEeecccchHHHHHHHHHHHHHH
Confidence 99988888888887777777663
No 344
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.24 E-value=0.1 Score=41.06 Aligned_cols=89 Identities=19% Similarity=0.113 Sum_probs=54.1
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 031934 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 96 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (150)
+..+|++|-|.|+.||..-.- ..+.+.+++..+-..+|+|.||+||...- +...=+..+.+.|.. -
T Consensus 211 iDSSDVvvqVlDARDPmGTrc--~~ve~ylkke~phKHli~vLNKvDLVPtw-----------vt~~Wv~~lSkeyPT-i 276 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIYVLNKVDLVPTW-----------VTAKWVRHLSKEYPT-I 276 (572)
T ss_pred hcccceeEEeeeccCCccccc--HHHHHHHhhcCCcceeEEEeeccccccHH-----------HHHHHHHHHhhhCcc-e
Confidence 457899999999999874321 23344455555678899999999998643 244444555566653 2
Q ss_pred EEEeccCCCCCHHH---HHHHHHHHH
Q 031934 97 YIECSSKTQQNVKA---VFDAAIKVV 119 (150)
Q Consensus 97 ~~~~Sa~~~~~i~~---~~~~l~~~~ 119 (150)
-|-.|..+..|=.. ++..+.++.
T Consensus 277 AfHAsi~nsfGKgalI~llRQf~kLh 302 (572)
T KOG2423|consen 277 AFHASINNSFGKGALIQLLRQFAKLH 302 (572)
T ss_pred eeehhhcCccchhHHHHHHHHHHhhc
Confidence 23344444455444 444444444
No 345
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=95.16 E-value=0.0097 Score=44.38 Aligned_cols=107 Identities=15% Similarity=0.056 Sum_probs=58.4
Q ss_pred cccccccccccccCCc---EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC-CCccC
Q 031934 6 QEDYNRLRPLSYRGAD---VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG-LVPVT 81 (150)
Q Consensus 6 ~e~~~~l~~~~~~~ad---~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~-~~~v~ 81 (150)
.+++..+...|+.+.+ .++++.|++.+.---+. ..+..+-+ .++|..+|.||+|......-....+. ...+.
T Consensus 203 ~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~ 278 (320)
T KOG2486|consen 203 PADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKIN 278 (320)
T ss_pred cchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceee
Confidence 4566777788887654 55666677654322221 12222222 27999999999997654321000000 00011
Q ss_pred HHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 82 TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
..+..+-+..-. .|++.+|+.++.|++.+...+..
T Consensus 279 f~~l~~~~f~~~-~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 279 FQGLIRGVFLVD-LPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhhccccceecc-CCceeeecccccCceeeeeehhh
Confidence 112212222222 36788999999999988766554
No 346
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=95.00 E-value=0.086 Score=41.23 Aligned_cols=59 Identities=25% Similarity=0.379 Sum_probs=37.8
Q ss_pred CCCCcccccccccccccC--CcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031934 2 NVIGQEDYNRLRPLSYRG--ADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~--ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
|.||+|+|....-..+.+ .|...+++-.+-. .+-+++ .+ .+. -.+|+.+|.+|+|+-..
T Consensus 225 DLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHL--gL--ALa---L~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 225 DLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHL--GL--ALA---LHVPVFVVVTKIDMCPA 288 (641)
T ss_pred eccchhhhhheeeeccccCCCCceEEEecccccceeccHHhh--hh--hhh---hcCcEEEEEEeeccCcH
Confidence 789999998766544443 6777777766642 222332 11 111 16999999999998654
No 347
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=94.72 E-value=0.061 Score=40.90 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=38.0
Q ss_pred CCCCCccccccccc-------ccc--cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCccc
Q 031934 1 MNVIGQEDYNRLRP-------LSY--RGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~~~~l~~-------~~~--~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~ 66 (150)
|||||..+...+.. .++ .+.|++++|.+++.. .+..+ ...++.+...++ -.+.|+|.|+.|...
T Consensus 91 IDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~D--kqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 91 IDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLD--GQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred EECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHH--HHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 69999775432221 122 168999999665532 22121 234555554442 267999999999763
No 348
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=94.51 E-value=0.13 Score=40.09 Aligned_cols=114 Identities=16% Similarity=0.129 Sum_probs=53.7
Q ss_pred CCCCCccc--ccc---cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCc--ccccccccC
Q 031934 1 MNVIGQED--YNR---LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL--REDKHYLAD 73 (150)
Q Consensus 1 wDt~G~e~--~~~---l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~--~~~~~~~~~ 73 (150)
||.||..- |.. +-.+-+..-|.||++.+-. -+..++ .+...+.+. +.|+.+|-||.|. .+.....-.
T Consensus 91 WDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r--f~~ndv--~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~ 164 (376)
T PF05049_consen 91 WDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER--FTENDV--QLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPR 164 (376)
T ss_dssp EEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS----HHHH--HHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-ST
T ss_pred EeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC--CchhhH--HHHHHHHHc--CCcEEEEEecccccHhhhhccCCc
Confidence 99999542 211 2234466789888876642 233333 556677765 7899999999995 111000000
Q ss_pred CCCCCccCHHHHHHHHHH----cCC--cEEEEeccCC--CCCHHHHHHHHHHHHhC
Q 031934 74 HPGLVPVTTAQGEELRKQ----IGA--SYYIECSSKT--QQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 74 ~~~~~~v~~~~~~~~~~~----~~~--~~~~~~Sa~~--~~~i~~~~~~l~~~~~~ 121 (150)
... .+-..+.+++.+.. .+. +++|-+|+.+ ..+...+.+.|.+.+..
T Consensus 165 ~f~-~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 165 TFN-EEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp T---HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred ccC-HHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 000 00122333333322 232 4788899987 35677788888776654
No 349
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=0.036 Score=43.17 Aligned_cols=57 Identities=16% Similarity=0.136 Sum_probs=40.2
Q ss_pred ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031934 9 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 9 ~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 68 (150)
|....+.+...+|.+|++||+...+--.+. .+.+..++.+ +-.+-+|.||.|.++.+
T Consensus 171 F~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 171 FTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKIRVVLNKADQVDTQ 227 (532)
T ss_pred hHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--cceeEEEeccccccCHH
Confidence 344556778899999999999875543343 5556666544 45688999999977643
No 350
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=94.12 E-value=0.078 Score=37.95 Aligned_cols=96 Identities=21% Similarity=0.210 Sum_probs=57.3
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccccccccCCCCCCccC---HHHHHHHHH
Q 031934 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLREDKHYLADHPGLVPVT---TAQGEELRK 90 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~~~~~~~~~~~~~~v~---~~~~~~~~~ 90 (150)
..+.+++|+|++.. .-+..+ ...++.+.+..+ -..++||.|..|....... ...+. ...+..+.+
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~------~~~l~~~~~~~l~~li~ 151 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDDSL------EDYLKKESNEALQELIE 151 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTH------HHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEEecC-cchHHH--HHHHHHHHHHccHHHHhHhhHHhhhccccccccH------HHHHhccCchhHhHHhh
Confidence 45789999999998 334333 233444444433 1468999998886654321 00011 134667777
Q ss_pred HcCCcEEEEeccC------CCCCHHHHHHHHHHHHhCC
Q 031934 91 QIGASYYIECSSK------TQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 91 ~~~~~~~~~~Sa~------~~~~i~~~~~~l~~~~~~~ 122 (150)
..+. .|...+.+ ....+.+++..+-..+.+.
T Consensus 152 ~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 152 KCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp HTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 7776 67766666 3356778887777766554
No 351
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=94.12 E-value=0.26 Score=41.16 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=43.5
Q ss_pred CCCCcc---cccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031934 2 NVIGQE---DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 2 Dt~G~e---~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 68 (150)
|.||.. ...+-......+||+||+|..+-+.-+.... .++....+. ...|.++.||+|.....
T Consensus 212 DsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 212 DSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--KPNIFILNNKWDASASE 277 (749)
T ss_pred cCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--CCcEEEEechhhhhccc
Confidence 667744 3334445577899999999999988877764 555555543 33467888899987654
No 352
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=93.38 E-value=0.16 Score=38.95 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=58.6
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCC----EEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH
Q 031934 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVP----VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 91 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~p----iilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (150)
+..||.++-|.|+++|..-++. ...+.-+++.. +..| ++=|-||+|..+.... .+ .
T Consensus 255 VaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e------------~E------~ 315 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE------------EE------K 315 (410)
T ss_pred HhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc------------cc------c
Confidence 5589999999999999877775 67777777664 2233 4667888886554321 11 1
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 92 IGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 92 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+ ..+.+||++|.|++++.+.+-....
T Consensus 316 n---~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 316 N---LDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred C---CccccccccCccHHHHHHHHHHHhh
Confidence 1 2568899999999999998766554
No 353
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.24 E-value=0.41 Score=35.55 Aligned_cols=99 Identities=18% Similarity=0.255 Sum_probs=64.6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc----------------------cc---C
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY----------------------LA---D 73 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~----------------------~~---~ 73 (150)
...++++|||.+....+..+ +.|++.-....- --++.+|||.|.+..... +. +
T Consensus 78 pl~a~vmvfdlse~s~l~al-qdwl~htdinsf-dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgis 155 (418)
T KOG4273|consen 78 PLQAFVMVFDLSEKSGLDAL-QDWLPHTDINSF-DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGIS 155 (418)
T ss_pred ceeeEEEEEeccchhhhHHH-Hhhccccccccc-hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccc
Confidence 35689999999999999987 899764332111 234678999996533110 00 0
Q ss_pred CCCCC---------ccCHHHHHHHHHHcCCcEEEEeccCCC------------CCHHHHHHHHHHHHh
Q 031934 74 HPGLV---------PVTTAQGEELRKQIGASYYIECSSKTQ------------QNVKAVFDAAIKVVI 120 (150)
Q Consensus 74 ~~~~~---------~v~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~~~~~l~~~~~ 120 (150)
+-+.. -........|+...++ .+++.+|.+. .|++.+|..|-..+-
T Consensus 156 etegssllgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 156 ETEGSSLLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred ccccccccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 00000 1233466789999998 9999998543 589999998876553
No 354
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=93.08 E-value=0.16 Score=41.26 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=43.5
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHH-HHhhhCCCCCEEEEeeCCCcc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~-~i~~~~~~~piilv~nK~D~~ 65 (150)
|.||+-+|++-....++=.|++++|.|.-+..-.+- +..+. .+.+ .+..+++.||.|..
T Consensus 104 DSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT--ETVLrQA~~E---RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 104 DSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT--ETVLRQAIAE---RIKPVLVMNKMDRA 163 (842)
T ss_pred cCCCcccchhhhhheeEeccCcEEEEEccCceEech--HHHHHHHHHh---hccceEEeehhhHH
Confidence 899999999999999999999999999988654432 22222 2222 35567788999964
No 355
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.94 E-value=0.4 Score=35.13 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=35.8
Q ss_pred CCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031934 4 IGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 4 ~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
||.|.|++ -..+++|.+|+|.|++-. ++.-. +++.+...+. .=.++.+|.||.|..
T Consensus 143 AGiEHfgR---g~~~~vD~vivVvDpS~~-sl~ta-eri~~L~~el-g~k~i~~V~NKv~e~ 198 (255)
T COG3640 143 AGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRTA-ERIKELAEEL-GIKRIFVVLNKVDEE 198 (255)
T ss_pred cchhhhcc---ccccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHHh-CCceEEEEEeeccch
Confidence 56666654 456799999999998753 33332 3333222222 127899999999944
No 356
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=92.77 E-value=0.16 Score=37.95 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=44.5
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHHHH----HHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVL----KKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----------~s~~~~~----~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
+|.+||.+-+.-|-+.+.+.-++|+|...+.- ..+++.+ .-|-+... ..+.+|+..||.|+..
T Consensus 207 fDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL---~tisvIlFLNKqDlla 283 (379)
T KOG0099|consen 207 FDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWL---RTISVILFLNKQDLLA 283 (379)
T ss_pred eccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHH---hhhheeEEecHHHHHH
Confidence 69999999999898999999999999988741 1111111 11222222 2578999999999865
Q ss_pred c
Q 031934 67 D 67 (150)
Q Consensus 67 ~ 67 (150)
.
T Consensus 284 e 284 (379)
T KOG0099|consen 284 E 284 (379)
T ss_pred H
Confidence 4
No 357
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=92.65 E-value=0.23 Score=39.11 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=63.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 70 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~ 70 (150)
.|+||+-.|-...--...+||..++|.++... ++-+++ .+.+...-...|++.||.|.+...-.
T Consensus 162 LDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha------~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 162 LDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA------MLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred eccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHH------HHHHhhccceEEEEEEeccCCccCcc
Confidence 48889888877555567789999999888532 222322 22332334678899999997654310
Q ss_pred ccCCCCCCccCHHHHHHHHHHcCC-----cEEEEeccCCCCCHHHHHH
Q 031934 71 LADHPGLVPVTTAQGEELRKQIGA-----SYYIECSSKTQQNVKAVFD 113 (150)
Q Consensus 71 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~ 113 (150)
.+.-....+....+.+..+. ..++++|..+|.++.+...
T Consensus 236 ----~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 236 ----NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred ----hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 00000122334444443332 3589999999999988765
No 358
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=92.43 E-value=0.85 Score=34.10 Aligned_cols=59 Identities=24% Similarity=0.417 Sum_probs=44.7
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 94 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (150)
.+.+||.+|+|-.+|- ..+.++ ...++..... ++|..+|.||.+.. . .++..++...++
T Consensus 182 sl~~aD~ai~VTEPTp-~glhD~-kr~~el~~~f--~ip~~iViNr~~~g---------------~-s~ie~~~~e~gi 240 (284)
T COG1149 182 SLKGADLAILVTEPTP-FGLHDL-KRALELVEHF--GIPTGIVINRYNLG---------------D-SEIEEYCEEEGI 240 (284)
T ss_pred hhccCCEEEEEecCCc-cchhHH-HHHHHHHHHh--CCceEEEEecCCCC---------------c-hHHHHHHHHcCC
Confidence 5789999999998873 455565 6666666654 79999999999532 2 278888988887
No 359
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=92.32 E-value=0.4 Score=31.86 Aligned_cols=60 Identities=10% Similarity=-0.026 Sum_probs=38.7
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
|+++.. .......+..+|.++++.+.+. .++... ...++.+.+.....++.+|.|+.+..
T Consensus 51 D~p~~~--~~~~~~~l~~aD~vviv~~~~~-~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 51 DTGAGI--SDNVLDFFLAADEVIVVTTPEP-TSITDA-YALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred ECCCCC--CHHHHHHHHhCCeEEEEcCCCh-hHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 676642 2333467889999999999874 444443 34445554433456788999998743
No 360
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=92.02 E-value=0.49 Score=34.86 Aligned_cols=65 Identities=11% Similarity=-0.004 Sum_probs=38.7
Q ss_pred CCCCCcccccc---c-------cccccc--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCc
Q 031934 1 MNVIGQEDYNR---L-------RPLSYR--GADVFVLAFSLVSR-ASYENVLKKWIPELQHYSP---GVPVVLVGTKLDL 64 (150)
Q Consensus 1 wDt~G~e~~~~---l-------~~~~~~--~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~ 64 (150)
|||||-.+... . ...|+. ..+++++|..++.. .+..+ ...++.+....+ -.++++|.|++|.
T Consensus 84 IDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~ 161 (249)
T cd01853 84 IDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAAS 161 (249)
T ss_pred EECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence 69999765421 0 112333 57888888766643 23332 244555554332 2579999999998
Q ss_pred ccc
Q 031934 65 RED 67 (150)
Q Consensus 65 ~~~ 67 (150)
...
T Consensus 162 ~~p 164 (249)
T cd01853 162 SPP 164 (249)
T ss_pred CCC
Confidence 643
No 361
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=91.18 E-value=0.028 Score=44.35 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=47.5
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
||||+-+|.--.+..++--||++.|||.+.....+.+ .-|... .+ -++|-+...||.|...
T Consensus 108 dtpghvdf~leverclrvldgavav~dasagve~qtl-tvwrqa-dk--~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 108 DTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQA-DK--FKIPAHCFINKMDKLA 168 (753)
T ss_pred cCCCcceEEEEHHHHHHHhcCeEEEEeccCCccccee-eeehhc-cc--cCCchhhhhhhhhhhh
Confidence 9999999999888899999999999999976655554 556322 11 1688888889999754
No 362
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=90.41 E-value=4.8 Score=31.09 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=58.5
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH
Q 031934 15 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 91 (150)
Q Consensus 15 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (150)
...+.||++++|+|+..+.+..+ .+..++.... ...|--+...|.+...-.. +...+...+....+..+.+.
T Consensus 136 sv~R~ADlIiiVld~~~~~~~~~---~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i--~~t~~l~~~d~~~ir~iL~E 210 (365)
T COG1163 136 SVARNADLIIIVLDVFEDPHHRD---IIERELEDVGIRLNKRPPDVTIKKKESGGIRI--NGTGPLTHLDEDTVRAILRE 210 (365)
T ss_pred eeeccCCEEEEEEecCCChhHHH---HHHHHHHhcCeEecCCCCceEEEEeccCCEEE--ecccccccCCHHHHHHHHHH
Confidence 46789999999999997776422 2333333322 2233333334433322111 00011122577889999999
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 92 IGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 92 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
|++ .--.+-......++++.+.+....
T Consensus 211 y~I-~nA~V~Ir~dvTlDd~id~l~~nr 237 (365)
T COG1163 211 YRI-HNADVLIREDVTLDDLIDALEGNR 237 (365)
T ss_pred hCc-ccceEEEecCCcHHHHHHHHhhcc
Confidence 987 555555666778888888887653
No 363
>PHA02518 ParA-like protein; Provisional
Probab=90.38 E-value=1 Score=31.58 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=36.1
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCC
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPV-VLVGTKLD 63 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D 63 (150)
+||||.. ..+....+..||.+|++...+.. .....+ ..++..+....++.|. .++.|+.+
T Consensus 82 iD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iv~n~~~ 144 (211)
T PHA02518 82 VDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDL-VELIKARQEVTDGLPKFAFIISRAI 144 (211)
T ss_pred EeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHH-HHHHHHHHhhCCCCceEEEEEeccC
Confidence 4888863 45556788899999999988743 233333 3344443333334554 46667765
No 364
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=89.66 E-value=1.3 Score=33.12 Aligned_cols=71 Identities=8% Similarity=-0.006 Sum_probs=43.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 98 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 98 (150)
.+|..++|.|++... +.+ .....+.+.. -+.-+|.||.|.... ...+..+....+. |+.
T Consensus 190 ~~~~~~LVl~a~~~~--~~~--~~~~~f~~~~--~~~g~IlTKlDe~~~--------------~G~~l~~~~~~~~-Pi~ 248 (272)
T TIGR00064 190 APDEVLLVLDATTGQ--NAL--EQAKVFNEAV--GLTGIILTKLDGTAK--------------GGIILSIAYELKL-PIK 248 (272)
T ss_pred CCceEEEEEECCCCH--HHH--HHHHHHHhhC--CCCEEEEEccCCCCC--------------ccHHHHHHHHHCc-CEE
Confidence 489999999998532 222 1222333221 245688899996543 2344455556676 887
Q ss_pred EeccCCCCCHHHHH
Q 031934 99 ECSSKTQQNVKAVF 112 (150)
Q Consensus 99 ~~Sa~~~~~i~~~~ 112 (150)
+++ +|++++++-
T Consensus 249 ~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 249 FIG--VGEKIDDLA 260 (272)
T ss_pred EEe--CCCChHhCc
Confidence 777 777776654
No 365
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=88.10 E-value=1.3 Score=33.75 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=50.2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 95 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 95 (150)
-++..|++|=|=|+.-|-|-... .+..+. +.+|-|+|.||.||.+..+ ...-++.+... +..
T Consensus 43 ~l~~~D~iiEvrDaRiPLssrn~---~~~~~~---~~k~riiVlNK~DLad~~~-----------~k~~iq~~~~~-~~~ 104 (335)
T KOG2485|consen 43 RLPLVDCIIEVRDARIPLSSRNE---LFQDFL---PPKPRIIVLNKMDLADPKE-----------QKKIIQYLEWQ-NLE 104 (335)
T ss_pred hcccccEEEEeeccccCCccccH---HHHHhc---CCCceEEEEecccccCchh-----------hhHHHHHHHhh-ccc
Confidence 46678999999999887665542 222332 3689999999999987543 44445555444 333
Q ss_pred EEEEeccCCC--CCHHHHHHHH
Q 031934 96 YYIECSSKTQ--QNVKAVFDAA 115 (150)
Q Consensus 96 ~~~~~Sa~~~--~~i~~~~~~l 115 (150)
.++..++... .++..++..+
T Consensus 105 ~~~~~~c~~~~~~~v~~l~~il 126 (335)
T KOG2485|consen 105 SYIKLDCNKDCNKQVSPLLKIL 126 (335)
T ss_pred chhhhhhhhhhhhccccHHHHH
Confidence 4544444433 3355544433
No 366
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=87.52 E-value=7.5 Score=26.96 Aligned_cols=86 Identities=15% Similarity=0.209 Sum_probs=60.3
Q ss_pred ccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHH
Q 031934 17 YRGADVFVLAFSLVSRA-------SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 89 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~-------s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (150)
++...+=.+++|.+|.- -..++ ..|+..+++..+..-+++|-|-.....+. ....+..+.
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~-~~~~~~l~~~~~~~~v~IvSNsaGs~~d~------------~~~~a~~~~ 102 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEY-AEWLNELKKQFGKDRVLIVSNSAGSSDDP------------DGERAEALE 102 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHH-HHHHHHHHHHCCCCeEEEEECCCCcccCc------------cHHHHHHHH
Confidence 66777778888988721 12344 67888888765544688888876443321 568888899
Q ss_pred HHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031934 90 KQIGASYYIECSSKTQQNVKAVFDAAI 116 (150)
Q Consensus 90 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 116 (150)
+.+++ +++.-+++.-.+..++...+.
T Consensus 103 ~~lgI-pvl~h~~kKP~~~~~i~~~~~ 128 (168)
T PF09419_consen 103 KALGI-PVLRHRAKKPGCFREILKYFK 128 (168)
T ss_pred HhhCC-cEEEeCCCCCccHHHHHHHHh
Confidence 99997 888888888866666665553
No 367
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=87.49 E-value=6.4 Score=32.49 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=46.2
Q ss_pred HHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE--eccCCCCCHHHHHHHHHH
Q 031934 40 KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE--CSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 40 ~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~Sa~~~~~i~~~~~~l~~ 117 (150)
.+-++.+++. ++|++++.||.|...+. ..+.+..+|...++ ++.. .=++-|.|-.++-+.+++
T Consensus 362 ~RHIenvr~F--GvPvVVAINKFd~DTe~------------Ei~~I~~~c~e~Gv-~va~~~~~~~Gg~Gai~LA~aVve 426 (557)
T PRK13505 362 ERHIENIRKF--GVPVVVAINKFVTDTDA------------EIAALKELCEELGV-EVALSEVWAKGGEGGVELAEKVVE 426 (557)
T ss_pred HHHHHHHHHc--CCCEEEEEeCCCCCCHH------------HHHHHHHHHHHcCC-CEEEecccccCCcchHHHHHHHHH
Confidence 4444444443 79999999999976543 34678889998887 6553 345557777777777776
Q ss_pred HHhC
Q 031934 118 VVIK 121 (150)
Q Consensus 118 ~~~~ 121 (150)
.+.+
T Consensus 427 A~~~ 430 (557)
T PRK13505 427 LIEE 430 (557)
T ss_pred HHhc
Confidence 6653
No 368
>PRK14974 cell division protein FtsY; Provisional
Probab=86.72 E-value=2.3 Score=32.81 Aligned_cols=72 Identities=11% Similarity=0.031 Sum_probs=42.9
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 98 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 98 (150)
..|..++|.|++...... .....+.+.. -+--+|.||.|.... .-.+..++...+. |+.
T Consensus 252 ~pd~~iLVl~a~~g~d~~----~~a~~f~~~~--~~~giIlTKlD~~~~--------------~G~~ls~~~~~~~-Pi~ 310 (336)
T PRK14974 252 KPDLVIFVGDALAGNDAV----EQAREFNEAV--GIDGVILTKVDADAK--------------GGAALSIAYVIGK-PIL 310 (336)
T ss_pred CCceEEEeeccccchhHH----HHHHHHHhcC--CCCEEEEeeecCCCC--------------ccHHHHHHHHHCc-CEE
Confidence 578889999997643222 2222222211 234678899997543 2333444445676 888
Q ss_pred EeccCCCCCHHHHHH
Q 031934 99 ECSSKTQQNVKAVFD 113 (150)
Q Consensus 99 ~~Sa~~~~~i~~~~~ 113 (150)
.++ +|++++++..
T Consensus 311 ~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 311 FLG--VGQGYDDLIP 323 (336)
T ss_pred EEe--CCCChhhccc
Confidence 777 7888877654
No 369
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=86.54 E-value=1.4 Score=32.87 Aligned_cols=48 Identities=27% Similarity=0.243 Sum_probs=29.9
Q ss_pred CCcEEEEEEeCCChhhH-------HHHHHHH---HHHHhhhC-CCCCEEEEeeCCCccc
Q 031934 19 GADVFVLAFSLVSRASY-------ENVLKKW---IPELQHYS-PGVPVVLVGTKLDLRE 66 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~-------~~~~~~~---~~~i~~~~-~~~piilv~nK~D~~~ 66 (150)
.-+|+|+++|+.+.-.- ......+ +.++.+.. -.+||.+|.||+|+..
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLP 83 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCccc
Confidence 46999999999853211 1111222 22222222 3799999999999865
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=86.42 E-value=2.9 Score=32.04 Aligned_cols=71 Identities=8% Similarity=0.035 Sum_probs=43.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 98 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 98 (150)
..+..++|.|++... +.+ .. .....+. --+.-+|.||.|... ..-.+...+...+. |+.
T Consensus 232 ~p~~~~LVl~a~~g~--~~~-~~-a~~f~~~--~~~~giIlTKlD~t~--------------~~G~~l~~~~~~~~-Pi~ 290 (318)
T PRK10416 232 APHEVLLVLDATTGQ--NAL-SQ-AKAFHEA--VGLTGIILTKLDGTA--------------KGGVVFAIADELGI-PIK 290 (318)
T ss_pred CCceEEEEEECCCCh--HHH-HH-HHHHHhh--CCCCEEEEECCCCCC--------------CccHHHHHHHHHCC-CEE
Confidence 467889999998532 222 11 1222221 124568889999543 22445555666787 888
Q ss_pred EeccCCCCCHHHHH
Q 031934 99 ECSSKTQQNVKAVF 112 (150)
Q Consensus 99 ~~Sa~~~~~i~~~~ 112 (150)
.++ +|++++++-
T Consensus 291 ~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 291 FIG--VGEGIDDLQ 302 (318)
T ss_pred EEe--CCCChhhCc
Confidence 888 778887664
No 371
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=82.62 E-value=6.6 Score=28.25 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=36.6
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhhCCCCCEEEEeeCCCcc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLK-KWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~-~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
|||+. ...+....+..||.++++...+ ..++..+ . .....+.......++-+|.|+.|..
T Consensus 121 D~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 121 DVPRG--PSPITRQALAAADLVLVVVNAD-AACYATL-HQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred ECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHH-HHHHHHHhhcccccccceEEeeccCcc
Confidence 66663 2344456778899999999885 3455554 3 2222232222345677899998854
No 372
>PTZ00258 GTP-binding protein; Provisional
Probab=82.41 E-value=2.5 Score=33.40 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=28.4
Q ss_pred CCCEEEEeeCC--CcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 031934 52 GVPVVLVGTKL--DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 105 (150)
Q Consensus 52 ~~piilv~nK~--D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 105 (150)
.+|+++|+|+. |+...... ..+.+..++...+..+++.+||+..
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~----------~~~~l~~~~~~~~~~~~v~~sa~~E 265 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNK----------WLAKIKEWVGEKGGGPIIPYSAEFE 265 (390)
T ss_pred cCCEEEEEECchhhhcccchH----------HHHHHHHHHHhcCCCeEEEeeHHHH
Confidence 38999999999 75221111 3456666666663238899998654
No 373
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=82.29 E-value=10 Score=30.59 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=51.3
Q ss_pred EEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031934 22 VFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 22 ~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
|+++--|.+- ++.+..+-++.+.+++.. ++|++++.|-.+=... -..+...++..+|+. +.
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pV 212 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PV 212 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cE
Confidence 5555556552 455555535556666665 7899999987652222 155677788889997 88
Q ss_pred EEeccCC--CCCHHHHHHHHHH
Q 031934 98 IECSSKT--QQNVKAVFDAAIK 117 (150)
Q Consensus 98 ~~~Sa~~--~~~i~~~~~~l~~ 117 (150)
+++++.. ...|..++..+.-
T Consensus 213 lpvnc~~l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 213 LPVNCEQLREEDITRILEEVLY 234 (492)
T ss_pred EEeehHHcCHHHHHHHHHHHHh
Confidence 8877654 3455555555443
No 374
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=81.97 E-value=3.1 Score=34.50 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=44.0
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHH
Q 031934 11 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 89 (150)
Q Consensus 11 ~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (150)
.+...|+.+.+++|+|+.-..-+.-.. .....+.+..| +.-.|+|.+|.|+.+.... .+..++++.
T Consensus 440 ~msKayM~NPNAIILCIQDGSVDAERS---nVTDLVsq~DP~GrRTIfVLTKVDlAEknlA----------~PdRI~kIl 506 (980)
T KOG0447|consen 440 SISKAYMQNPNAIILCIQDGSVDAERS---IVTDLVSQMDPHGRRTIFVLTKVDLAEKNVA----------SPSRIQQII 506 (980)
T ss_pred HHHHHHhcCCCeEEEEeccCCcchhhh---hHHHHHHhcCCCCCeeEEEEeecchhhhccC----------CHHHHHHHH
Confidence 455679999999999986543322221 22223334333 6779999999999887554 666666665
Q ss_pred HH
Q 031934 90 KQ 91 (150)
Q Consensus 90 ~~ 91 (150)
..
T Consensus 507 eG 508 (980)
T KOG0447|consen 507 EG 508 (980)
T ss_pred hc
Confidence 44
No 375
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=81.86 E-value=8.3 Score=26.05 Aligned_cols=61 Identities=10% Similarity=-0.080 Sum_probs=38.4
Q ss_pred CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
.||++.... .....+..+|.+|++.+.+. .+...+ ..+++.+... ......+|.|+.+...
T Consensus 68 iD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~-~~~~~~~~~~-~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 68 IDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDA-DRVKGLLEAL-GIKVVGVIVNRVRPDM 128 (179)
T ss_pred EECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHH-HHHHHHHHHc-CCceEEEEEeCCcccc
Confidence 377765432 23456788999999998875 344444 5566555543 2234678999988543
No 376
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=81.30 E-value=3.9 Score=30.18 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=25.7
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 92 IGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 92 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
-.+.|++..||+++.|+..+++.+..++..
T Consensus 238 ~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~ 267 (268)
T cd04170 238 GLLVPVLCGSALTNIGVRELLDALVHLLPS 267 (268)
T ss_pred CCEEEEEEeeCCCCcCHHHHHHHHHHhCCC
Confidence 344689999999999999999999988754
No 377
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=80.89 E-value=2.7 Score=27.01 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=19.7
Q ss_pred EeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 031934 58 VGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 103 (150)
Q Consensus 58 v~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 103 (150)
++||+|+.. ..+.+..+.+.+.-..++++||.
T Consensus 1 AaNK~D~~~--------------a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA--------------ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S---------------HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc--------------cHhHHHHHHHhCCCCceeeccHH
Confidence 589999644 44566667777765588999986
No 378
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.11 E-value=7.2 Score=24.13 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=29.2
Q ss_pred ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEe
Q 031934 13 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVG 59 (150)
Q Consensus 13 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~ 59 (150)
.+.-+..||++|++.|..+......+ ....+ + .++|++.+-
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~~~~~v-k~~ak---k--~~ip~~~~~ 82 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHNAMWKV-KKAAK---K--YGIPIIYSR 82 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChHHHHHH-HHHHH---H--cCCcEEEEC
Confidence 45667899999999999988776655 33322 2 268998774
No 379
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=76.67 E-value=8.9 Score=26.06 Aligned_cols=43 Identities=14% Similarity=0.030 Sum_probs=25.5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
..+.+++|.|.....+.. .+...+.+..+ ..-+|.||.|....
T Consensus 112 ~~~~~~lVv~~~~~~~~~----~~~~~~~~~~~--~~~viltk~D~~~~ 154 (173)
T cd03115 112 KPDEVLLVVDAMTGQDAV----NQAKAFNEALG--ITGVILTKLDGDAR 154 (173)
T ss_pred CCCeEEEEEECCCChHHH----HHHHHHHhhCC--CCEEEEECCcCCCC
Confidence 478999999987544322 23333332222 34577799996553
No 380
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=75.88 E-value=9.1 Score=28.53 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=25.6
Q ss_pred cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 92 IGASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 92 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
-.+.|++..||.++.|+..+++.+..++..
T Consensus 240 ~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~ 269 (270)
T cd01886 240 NKIVPVLCGSAFKNKGVQPLLDAVVDYLPS 269 (270)
T ss_pred CcEEEEEeCcCCCCcCHHHHHHHHHHhcCC
Confidence 345688999999999999999999988754
No 381
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=75.77 E-value=7.6 Score=24.37 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=35.2
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-C-CCCEEEEeeC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-P-GVPVVLVGTK 61 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~-~~piilv~nK 61 (150)
||++... ......+..+|.++++.+.+- .+.... ..+++.+.+.. + ...+.+|+|+
T Consensus 49 Dtpp~~~--~~~~~~l~~aD~vlvvv~~~~-~s~~~~-~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 49 DLGRSLD--EVSLAALDQADRVFLVTQQDL-PSIRNA-KRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred eCCCCcC--HHHHHHHHHcCeEEEEecCCh-HHHHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence 6766543 223446788999999987764 455555 66666666544 2 3456677764
No 382
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=75.31 E-value=7.1 Score=31.26 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=37.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 98 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 98 (150)
..+.+++|.|.+... +. -.+...+.... + ..=+|.||.|-.. ....+..++...+. |+.
T Consensus 212 ~p~e~lLVvda~tgq---~~-~~~a~~f~~~v-~-i~giIlTKlD~~~--------------~~G~~lsi~~~~~~-PI~ 270 (428)
T TIGR00959 212 NPDEILLVVDAMTGQ---DA-VNTAKTFNERL-G-LTGVVLTKLDGDA--------------RGGAALSVRSVTGK-PIK 270 (428)
T ss_pred CCceEEEEEeccchH---HH-HHHHHHHHhhC-C-CCEEEEeCccCcc--------------cccHHHHHHHHHCc-CEE
Confidence 578889999987543 33 23444444221 1 2347789999543 22346666777776 766
Q ss_pred Eecc
Q 031934 99 ECSS 102 (150)
Q Consensus 99 ~~Sa 102 (150)
+++.
T Consensus 271 fi~~ 274 (428)
T TIGR00959 271 FIGV 274 (428)
T ss_pred EEeC
Confidence 6554
No 383
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=74.78 E-value=13 Score=23.88 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=29.2
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 62 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 62 (150)
.+++..+|+|.. ....+.. ...+..++....++|+.++.++.
T Consensus 36 ~~~i~avvi~~d-~~~~~~~-~~ll~~i~~~~~~iPVFl~~~~~ 77 (115)
T PF03709_consen 36 FTDIAAVVISWD-GEEEDEA-QELLDKIRERNFGIPVFLLAERD 77 (115)
T ss_dssp TTTEEEEEEECH-HHHHHHH-HHHHHHHHHHSTT-EEEEEESCC
T ss_pred CCCeeEEEEEcc-cccchhH-HHHHHHHHHhCCCCCEEEEecCC
Confidence 455555555554 4455554 78889999888899999998754
No 384
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=74.21 E-value=32 Score=25.23 Aligned_cols=46 Identities=11% Similarity=0.058 Sum_probs=28.6
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEE-EEeeCCC
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVV-LVGTKLD 63 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~pii-lv~nK~D 63 (150)
.+..||.+|++... +..++..+ ...+..+.+. ..+.+++ +|.|+.+
T Consensus 137 ~l~~AD~viip~~~-~~~sl~~~-~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 137 PLQYADYALIVTAN-DFDSIFAA-NRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred hhhhCcEEEEEecC-chhhHHHH-HHHHHHHHhhhhccCCCceEEEEeccC
Confidence 36679999998866 44555554 4554444432 2356654 7889866
No 385
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=72.79 E-value=4.9 Score=34.15 Aligned_cols=65 Identities=6% Similarity=0.018 Sum_probs=41.1
Q ss_pred CCCCCcccccc-------c---cccccc--CCcEEEEEEeCCChhh-HHHHHHHHHHHHhhhCCC---CCEEEEeeCCCc
Q 031934 1 MNVIGQEDYNR-------L---RPLSYR--GADVFVLAFSLVSRAS-YENVLKKWIPELQHYSPG---VPVVLVGTKLDL 64 (150)
Q Consensus 1 wDt~G~e~~~~-------l---~~~~~~--~ad~~i~v~d~~~~~s-~~~~~~~~~~~i~~~~~~---~piilv~nK~D~ 64 (150)
+||||-.+... + ...+++ ++|++|+|..++.... .++ ..+++.+...+.. .-+|||.|..|.
T Consensus 171 IDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD--~~aLr~Iq~lFG~~Iwk~tIVVFThgD~ 248 (763)
T TIGR00993 171 IDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSND--LPLLRTITDVLGPSIWFNAIVTLTHAAS 248 (763)
T ss_pred EECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHH--HHHHHHHHHHhCHHhHcCEEEEEeCCcc
Confidence 48999665321 1 111333 5899999998764332 233 3566777666642 568999999998
Q ss_pred ccc
Q 031934 65 RED 67 (150)
Q Consensus 65 ~~~ 67 (150)
...
T Consensus 249 lpp 251 (763)
T TIGR00993 249 APP 251 (763)
T ss_pred CCC
Confidence 753
No 386
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=72.65 E-value=6.9 Score=35.36 Aligned_cols=48 Identities=27% Similarity=0.299 Sum_probs=32.4
Q ss_pred cCCcEEEEEEeCCChhh--H-------HHHHHHHHHHHhhhC-CCCCEEEEeeCCCccc
Q 031934 18 RGADVFVLAFSLVSRAS--Y-------ENVLKKWIPELQHYS-PGVPVVLVGTKLDLRE 66 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s--~-------~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~ 66 (150)
+..+|+|+++|+.+.-+ - ..+ ...+.++.+.. -..||.+|.||+|+..
T Consensus 200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~l-R~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 200 QPLNGVVVTVSLADLLTADPAERKAHARAI-RQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCCeEEEEEEHHHHhCCCHHHHHHHHHHH-HHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 35899999999986431 1 122 33444444433 4799999999999863
No 387
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=72.53 E-value=12 Score=30.13 Aligned_cols=79 Identities=14% Similarity=0.086 Sum_probs=43.7
Q ss_pred CCCCccccccc-----cc-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccccccccCC
Q 031934 2 NVIGQEDYNRL-----RP-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHYLADH 74 (150)
Q Consensus 2 Dt~G~e~~~~l-----~~-~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~~~~~~~~~ 74 (150)
||||......- .. .....+|.+++|.|++... +. -.....+.. ..++ -+|.||.|...
T Consensus 182 DTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~a-v~~a~~F~~---~l~i~gvIlTKlD~~a-------- 246 (437)
T PRK00771 182 DTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QA-KNQAKAFHE---AVGIGGIIITKLDGTA-------- 246 (437)
T ss_pred ECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HH-HHHHHHHHh---cCCCCEEEEecccCCC--------
Confidence 89986653211 01 1233678899999997753 22 122333332 2343 47789999643
Q ss_pred CCCCccCHHHHHHHHHHcCCcEEEEecc
Q 031934 75 PGLVPVTTAQGEELRKQIGASYYIECSS 102 (150)
Q Consensus 75 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 102 (150)
..-.+.......+. |+.+++.
T Consensus 247 ------~~G~~ls~~~~~~~-Pi~fig~ 267 (437)
T PRK00771 247 ------KGGGALSAVAETGA-PIKFIGT 267 (437)
T ss_pred ------cccHHHHHHHHHCc-CEEEEec
Confidence 23444555666665 6655544
No 388
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=72.13 E-value=13 Score=29.23 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=30.9
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 031934 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 104 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 104 (150)
.+|+++++||.|...... +-....+..++...+. +++++||..
T Consensus 206 ~KP~lyvaN~~e~~~~~~---------n~~~~~i~~~~~~~~~-~vV~~sA~~ 248 (372)
T COG0012 206 AKPMLYVANVSEDDLANL---------NEYVKRLKELAAKENA-EVVPVSAAI 248 (372)
T ss_pred cCCeEEEEECCcccccch---------hHHHHHHHHHhhhcCC-cEEEeeHHH
Confidence 589999999999765431 0025667777777774 899999873
No 389
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=71.78 E-value=12 Score=25.69 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031934 83 AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
++.....+..+. +++.+|++++.+++++...+..
T Consensus 2 ~~~~~~y~~~gy-~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 2 EELLEQYEKLGY-PVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp HHHHHHHHHTTS-EEEE-BTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHcCC-cEEEEeCCCCcCHHHHHHHhcC
Confidence 345566777887 9999999999999999886644
No 390
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=69.94 E-value=4 Score=28.02 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=37.7
Q ss_pred ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCC-CEEEEeeCCCcccc
Q 031934 13 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV-PVVLVGTKLDLRED 67 (150)
Q Consensus 13 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-piilv~nK~D~~~~ 67 (150)
....+..+|.+|++.+.+. .+...+ ..+++.+....... .+-+|.|+.+..+.
T Consensus 110 ~~~~l~~ad~viv~~~~~~-~~i~~~-~~~~~~l~~~~~~~~~~~vv~N~v~~~~~ 163 (195)
T PF01656_consen 110 VRNALAAADYVIVPIEPDP-SSIEGA-ERLIELLKRLGKKLKIIGVVINRVDPGNE 163 (195)
T ss_dssp HHHHHHTSSEEEEEEESSH-HHHHHH-HHHHHHHHHHTHTEEEEEEEEEEETSCCH
T ss_pred HHHHHHhCceeeeecCCcH-HHHHHH-HHHHHHHHHhccccceEEEEEeeeCCCcc
Confidence 3456779999999999876 446666 67777777664332 45689999976543
No 391
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=69.59 E-value=0.77 Score=33.78 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCCCEEEEeeCCCccccccccc------CCCCCCccCHHHHHH----HHHHcCC--c---EEEEeccCCCCCHHHHHHHH
Q 031934 51 PGVPVVLVGTKLDLREDKHYLA------DHPGLVPVTTAQGEE----LRKQIGA--S---YYIECSSKTQQNVKAVFDAA 115 (150)
Q Consensus 51 ~~~piilv~nK~D~~~~~~~~~------~~~~~~~v~~~~~~~----~~~~~~~--~---~~~~~Sa~~~~~i~~~~~~l 115 (150)
.+.++|+..||.|+.++...++ -+...-....+.+.. +...++- . .--++.|.+-+||.-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 4789999999999987643211 000000012222222 2222221 1 12256788889999999988
Q ss_pred HHHHhCC
Q 031934 116 IKVVIKP 122 (150)
Q Consensus 116 ~~~~~~~ 122 (150)
...++..
T Consensus 345 kDtiLq~ 351 (359)
T KOG0085|consen 345 KDTILQL 351 (359)
T ss_pred HHHHHHh
Confidence 8877654
No 392
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=69.15 E-value=4.6 Score=28.32 Aligned_cols=41 Identities=24% Similarity=0.471 Sum_probs=27.0
Q ss_pred CCcEEEEEEeCC-ChhhHHHHHHHHHHHHhhhCCCCCEEEEe
Q 031934 19 GADVFVLAFSLV-SRASYENVLKKWIPELQHYSPGVPVVLVG 59 (150)
Q Consensus 19 ~ad~~i~v~d~~-~~~s~~~~~~~~~~~i~~~~~~~piilv~ 59 (150)
++|++++-+-++ ++..|.......+..++...|+.||++|-
T Consensus 59 ~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 59 DADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp --SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred CCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 456666655554 45566665588899999988999999886
No 393
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=67.48 E-value=51 Score=24.81 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=63.6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHH--HhhhCCCCCEEEEeeCCCcccccccccCCCC-CCccCHHHHHHHHHHcCCc
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPE--LQHYSPGVPVVLVGTKLDLREDKHYLADHPG-LVPVTTAQGEELRKQIGAS 95 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~--i~~~~~~~piilv~nK~D~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~ 95 (150)
.+++++++.+.++.++.++.-.+..+. +-+...+-=++|+..|.|...--.. ... +.-++..+..++.+..=.
T Consensus 63 ~~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~~dr~~rIev---GyGLEg~ltD~~a~~iIr~~i~- 138 (271)
T COG1512 63 GAQIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVAMNDRRVRIEV---GYGLEGVLTDAQAGRIIRETIA- 138 (271)
T ss_pred CCeEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEEcCCCeEEEEE---ecCcccccChHHHHHHHHhhhC-
Confidence 689999999999988777653444444 3333335558888888883211000 000 011466666666666644
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhCCCcch
Q 031934 96 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 126 (150)
Q Consensus 96 ~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~ 126 (150)
|.|.=-. ...+|+..++.+.+.+..++...
T Consensus 139 P~fr~gn-y~~gi~~~id~l~~~l~g~~~~~ 168 (271)
T COG1512 139 PAFRDGN-YAGGLEAGIDRLVALLAGEPLPS 168 (271)
T ss_pred cccccCc-HHHHHHHHHHHHHHHHcCCCCCC
Confidence 6554333 56789999999999887665443
No 394
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=67.47 E-value=14 Score=23.46 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=25.7
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEee
Q 031934 24 VLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGT 60 (150)
Q Consensus 24 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~n 60 (150)
++++..+....+..+ ..+.+.+++..+ ++++++.|.
T Consensus 53 vV~iS~~~~~~~~~~-~~~i~~l~~~~~~~~~i~vGG~ 89 (119)
T cd02067 53 AIGLSGLLTTHMTLM-KEVIEELKEAGLDDIPVLVGGA 89 (119)
T ss_pred EEEEeccccccHHHH-HHHHHHHHHcCCCCCeEEEECC
Confidence 455566666777777 889999988766 666666664
No 395
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=66.71 E-value=9.3 Score=29.93 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=27.6
Q ss_pred CCEEEEeeCCCccc-ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 031934 53 VPVVLVGTKLDLRE-DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 104 (150)
Q Consensus 53 ~piilv~nK~D~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 104 (150)
+|+++|+|+.|..- ... -..+.+..++...+. +++++||..
T Consensus 200 KP~i~v~N~~e~~~~~~~----------~~~~~i~~~~~~~~~-~~i~~sa~~ 241 (364)
T PRK09601 200 KPVLYVANVDEDDLADGN----------PYVKKVREIAAKEGA-EVVVICAKI 241 (364)
T ss_pred CCeEEEEECCcccccccc----------HHHHHHHHHHHHcCC-eEEEEEHHH
Confidence 89999999998421 111 134566667767765 889988853
No 396
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=66.64 E-value=50 Score=25.43 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=43.2
Q ss_pred CCcEEEEEEeCCChhhHHH-HHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC-CcE
Q 031934 19 GADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASY 96 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~-~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~ 96 (150)
.-|+++-|.|+.+-..... . ......... .-=++|.||.|+.+.. .........+..+ ..+
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~-~~~~~~Qia----~AD~ivlNK~Dlv~~~------------~l~~l~~~l~~lnp~A~ 178 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAI-AELAEDQLA----FADVIVLNKTDLVDAE------------ELEALEARLRKLNPRAR 178 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHH-HHHHHHHHH----hCcEEEEecccCCCHH------------HHHHHHHHHHHhCCCCe
Confidence 3578999999987554333 2 233222222 1236778999998753 2344555556554 246
Q ss_pred EEEeccCCCCCHHHHHH
Q 031934 97 YIECSSKTQQNVKAVFD 113 (150)
Q Consensus 97 ~~~~Sa~~~~~i~~~~~ 113 (150)
++.+|. .+....+++.
T Consensus 179 i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 179 IIETSY-GDVDLAELLD 194 (323)
T ss_pred EEEccc-cCCCHHHhhc
Confidence 777666 3444443433
No 397
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.35 E-value=6.9 Score=29.43 Aligned_cols=64 Identities=23% Similarity=0.189 Sum_probs=34.6
Q ss_pred CCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 53 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 53 ~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
+|+++||.|.|-...-.. +.+.-.-..++.++..||. ..+..|++-..-...+-+.+.+..+..
T Consensus 191 ~PV~IVgsKYDvFq~Fes-----ekRkH~C~~LRf~Ah~yGa-aLlmfSskMe~l~K~~r~~i~HlaFG~ 254 (363)
T KOG3929|consen 191 VPVVIVGSKYDVFQDFES-----EKRKHICKTLRFVAHYYGA-ALLMFSSKMEALLKKIRGVINHLAFGI 254 (363)
T ss_pred CceEEeccchhhhccccH-----HHHHHHHHHHHHHHHHhhh-HHHHHHHhhHHHHHHHHhhHHHhhcCC
Confidence 899999999996543210 0000022345556666775 566667775433344444444444544
No 398
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=65.55 E-value=13 Score=27.57 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=25.3
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031934 93 GASYYIECSSKTQQNVKAVFDAAIKVVIK 121 (150)
Q Consensus 93 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~ 121 (150)
.+.|++..||.++.|+..+++.+.+.+..
T Consensus 238 ~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~ 266 (267)
T cd04169 238 ELTPVFFGSALNNFGVQELLDALVDLAPA 266 (267)
T ss_pred CEEEEEecccccCcCHHHHHHHHHHHCCC
Confidence 34688999999999999999999998754
No 399
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=65.23 E-value=52 Score=24.09 Aligned_cols=47 Identities=13% Similarity=0.062 Sum_probs=27.4
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEE-EEeeCCCc
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVV-LVGTKLDL 64 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~pii-lv~nK~D~ 64 (150)
.+..||.+|++...+. .++..+ ...++.+... ..+.+++ +|.|+.+.
T Consensus 135 al~~aD~vlip~~p~~-~~l~~~-~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 135 PLNYADYALIVTDNDF-DSIFAA-NRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred hhhhcCEEEEEecCCc-ccHHHH-HHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 3678999999887753 334343 3333333322 2355543 78899873
No 400
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=64.35 E-value=17 Score=25.03 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=27.2
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 68 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~ 68 (150)
.-+.+|.|.|+.+..........+.+.+.. . =++|.||+|+.+..
T Consensus 113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~----A-DvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 113 RLDSIITVVDATNFDELENIPELLREQIAF----A-DVIVLNKIDLVSDE 157 (178)
T ss_dssp SESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH
T ss_pred cccceeEEeccccccccccchhhhhhcchh----c-CEEEEeccccCChh
Confidence 357899999997754444442334444432 2 25677999988754
No 401
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=63.32 E-value=18 Score=29.08 Aligned_cols=42 Identities=14% Similarity=0.006 Sum_probs=26.0
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
..+-+++|.|++......+ ....+.+. --+--+|.||.|...
T Consensus 212 ~p~e~lLVlda~~Gq~a~~----~a~~F~~~--~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 212 QPDNIIFVMDGSIGQAAEA----QAKAFKDS--VDVGSVIITKLDGHA 253 (429)
T ss_pred CCcEEEEEeccccChhHHH----HHHHHHhc--cCCcEEEEECccCCC
Confidence 5688999999876533322 22333321 135678899999653
No 402
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=62.06 E-value=37 Score=25.61 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=39.9
Q ss_pred CCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 53 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 53 ~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+|++.|.||+|-. +.++...+++..+ -+-+|+.-+-|++.+++.+-..+-
T Consensus 239 ~~ClYvYnKID~v---------------s~eevdrlAr~Pn---svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 239 IKCLYVYNKIDQV---------------SIEEVDRLARQPN---SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEeecccee---------------cHHHHHHHhcCCC---cEEEEeccccCHHHHHHHHHHHhc
Confidence 7899999999943 6678888887776 345688888999999998887763
No 403
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=61.41 E-value=30 Score=24.95 Aligned_cols=58 Identities=10% Similarity=-0.021 Sum_probs=37.2
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 64 (150)
|+|+.-. ......+..+|.+|++.... ..+...+ ...++.+.... ..++.++.|+.+.
T Consensus 118 D~p~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~-~~~~~~l~~~~-~~~~~iviN~~~~ 175 (261)
T TIGR01968 118 DCPAGIE--SGFRNAVAPADEAIVVTTPE-VSAVRDA-DRVIGLLEAKG-IEKIHLIVNRLRP 175 (261)
T ss_pred eCCCCcC--HHHHHHHHhCCeEEEEcCCC-cHHHHHH-HHHHHHHHHcC-CCceEEEEeCcCc
Confidence 6666432 22234567899999998875 4556665 56666665543 2467788898874
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=60.67 E-value=23 Score=28.43 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=35.6
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
..+.+++|.|.+... ++ -.....+.+ ..+ .=+|.||.|-... .-.+..+....+. |+
T Consensus 213 ~p~evllVlda~~gq---~a-v~~a~~F~~---~~~i~giIlTKlD~~~r--------------gG~alsi~~~~~~-PI 270 (433)
T PRK10867 213 NPDEILLVVDAMTGQ---DA-VNTAKAFNE---ALGLTGVILTKLDGDAR--------------GGAALSIRAVTGK-PI 270 (433)
T ss_pred CCCeEEEEEecccHH---HH-HHHHHHHHh---hCCCCEEEEeCccCccc--------------ccHHHHHHHHHCc-CE
Confidence 567789999987543 22 233333333 222 2467799995432 2335566667776 76
Q ss_pred EEecc
Q 031934 98 IECSS 102 (150)
Q Consensus 98 ~~~Sa 102 (150)
.+++.
T Consensus 271 ~fig~ 275 (433)
T PRK10867 271 KFIGT 275 (433)
T ss_pred EEEeC
Confidence 66554
No 405
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=58.56 E-value=62 Score=22.80 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=37.0
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCE-EEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031934 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPV-VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 94 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~pi-ilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (150)
+.||.+|++.+.+ ..+...+ ....+.+..... +.++ -++.|+.+... ......++.+.++.
T Consensus 140 ~~ad~vliv~~p~-~~sl~~~-~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~--------------~~~~~~~~~~~~~~ 203 (212)
T cd02117 140 GKADEIYIVTSGE-FMALYAA-NNICKGIRKYAKSGGVRLGGLICNSRNTDR--------------ETELIDAFAERLGT 203 (212)
T ss_pred ccCcEEEEEeccc-HHHHHHH-HHHHHHHHHhCcccCCcEEEEEEeCCCCcc--------------HHHHHHHHHHHcCC
Confidence 3799999999874 4455444 444444444321 4443 48999988431 33455677777765
No 406
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=56.24 E-value=34 Score=25.24 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=32.8
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCC
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKL 62 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~ 62 (150)
....+|.++..|.+.+...-+.+ .+-.+.+.++. ++.|+.+|-|=-
T Consensus 151 aAA~adfVi~~YNP~s~~R~~~~-~~a~eil~~~r~~~tpVgivrnag 197 (249)
T COG1010 151 AAAEADFVIALYNPISKRRPEQL-GRAFEILREHRSPDTPVGIVRNAG 197 (249)
T ss_pred HHhhCCEEEEEECCccccchHHH-HHHHHHHHHhcCCCCcEEEEecCC
Confidence 34579999999999887655454 45555566655 489999987644
No 407
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=55.29 E-value=86 Score=23.44 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=42.9
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 98 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 98 (150)
++|+++++-...-+.+-+.+ ..++..+....++.|+++ -|--..... .++.+.+.++++.-++ --+
T Consensus 96 Gad~v~~~~P~y~~~~~~~i-~~~~~~v~~a~~~lpi~i-Yn~P~~tg~-----------~l~~~~~~~L~~~pni-vgi 161 (288)
T cd00954 96 GYDAISAITPFYYKFSFEEI-KDYYREIIAAAASLPMII-YHIPALTGV-----------NLTLEQFLELFEIPNV-IGV 161 (288)
T ss_pred CCCEEEEeCCCCCCCCHHHH-HHHHHHHHHhcCCCCEEE-EeCccccCC-----------CCCHHHHHHHhcCCCE-EEE
Confidence 78998887776666666676 778888877654688776 454332221 2466777777753333 334
Q ss_pred Eecc
Q 031934 99 ECSS 102 (150)
Q Consensus 99 ~~Sa 102 (150)
.-|+
T Consensus 162 K~s~ 165 (288)
T cd00954 162 KFTA 165 (288)
T ss_pred EeCC
Confidence 4443
No 408
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=55.26 E-value=30 Score=27.19 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=41.1
Q ss_pred ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCccc
Q 031934 13 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLRE 66 (150)
Q Consensus 13 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~ 66 (150)
...++..+|.+++|.+.+- .+.... .+++..+.+..+ +.+..+|.|+.+...
T Consensus 233 t~~vL~~Sd~iviv~e~sl-~slR~a-k~lld~l~~~r~~~~~p~lv~n~~~~~~ 285 (366)
T COG4963 233 TRQVLSGSDEIVIVAEPSL-ASLRNA-KELLDELKRLRPNDPKPILVLNRVGVPK 285 (366)
T ss_pred HHHHHhcCCeEEEEecccH-HHHHHH-HHHHHHHHHhCCCCCCceEEeeecCCCC
Confidence 3567889999999999864 466666 788888888774 578899999998543
No 409
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=55.12 E-value=38 Score=22.86 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=40.8
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccccccccCCCCCCcc-CHHHHHHHHHHcCC
Q 031934 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHYLADHPGLVPV-TTAQGEELRKQIGA 94 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~ 94 (150)
..+|.+|++.... +.+...+ ..+++.+.+. +.++ -+|.|+.+....... ...+. .....+++++.++.
T Consensus 90 ~~ad~viiV~~p~-~~s~~~~-~~~~~~l~~~--~~~~~gvv~N~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 159 (169)
T cd02037 90 LPIDGAVIVTTPQ-EVALDDV-RKAIDMFKKV--NIPILGVVENMSYFVCPHCG-----KKIYIFGKGGGEKLAEELGV 159 (169)
T ss_pred cCCCeEEEEECCc-hhhHHHH-HHHHHHHHhc--CCCeEEEEEcCCcccCCCCC-----CcccccCCccHHHHHHHcCC
Confidence 5789999998776 4566665 6777777765 4454 478899875311100 00011 22456777777775
No 410
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=53.66 E-value=33 Score=21.62 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=27.8
Q ss_pred cccCCcEEEEEEeCCC--hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 031934 16 SYRGADVFVLAFSLVS--RASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~--~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 64 (150)
.+++||++|..+|... .-+.-++ -|... .++|++++.+....
T Consensus 58 ~i~~~D~via~l~~~~~d~Gt~~El--G~A~a-----lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 58 GIRECDIVIANLDGFRPDSGTAFEL--GYAYA-----LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHSSEEEEEECSSS--HHHHHHH--HHHHH-----TTSEEEEEECCCCT
T ss_pred HHHHCCEEEEECCCCCCCCcHHHHH--HHHHH-----CCCEEEEEEcCCcc
Confidence 5778999999999844 3333332 22222 26899999887664
No 411
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.98 E-value=63 Score=21.86 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=30.3
Q ss_pred CCcEEEEEEeCCChhh---HHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 031934 19 GADVFVLAFSLVSRAS---YENVLKKWIPELQHYSPGVPVVLVGTK 61 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s---~~~~~~~~~~~i~~~~~~~piilv~nK 61 (150)
.+|.+++.+=.+|... +..-+...++.+++..++.|++++...
T Consensus 57 ~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~p~~~iil~~~~ 102 (177)
T cd01844 57 PADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETHPDTPILLVSPR 102 (177)
T ss_pred CCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHCcCCCEEEEecC
Confidence 6799999888887432 222236777777777788899888754
No 412
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=51.72 E-value=31 Score=23.10 Aligned_cols=26 Identities=15% Similarity=0.028 Sum_probs=18.6
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLV 30 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~ 30 (150)
||||..... ..++..||-+|++..+.
T Consensus 98 DtaG~~~~~---~~~~~~Ad~~ivv~tpe 123 (148)
T cd03114 98 ETVGVGQSE---VDIASMADTTVVVMAPG 123 (148)
T ss_pred ECCccChhh---hhHHHhCCEEEEEECCC
Confidence 788855321 24788899889988876
No 413
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=51.66 E-value=34 Score=24.84 Aligned_cols=58 Identities=9% Similarity=0.164 Sum_probs=35.5
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHH----HhhhCCCCCEEEEeeCCC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE----LQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~----i~~~~~~~piilv~nK~D 63 (150)
||||... .+....+..||.+|+....+. .++... ...+.. .....++.|..++.|..+
T Consensus 90 D~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~-~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 90 DTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEA-LSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred eCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHH-HHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 7777553 344557788999988887753 334333 222222 222335788889999876
No 414
>PRK10818 cell division inhibitor MinD; Provisional
Probab=50.30 E-value=78 Score=23.14 Aligned_cols=60 Identities=12% Similarity=-0.008 Sum_probs=35.7
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-------CCCCEEEEeeCCCcc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-------PGVPVVLVGTKLDLR 65 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------~~~piilv~nK~D~~ 65 (150)
|+|+.-.. .....+..+|.++++.+.+. .++..+ ..+++.+.... .+.+..+|.|+.+..
T Consensus 120 D~p~~~~~--~~~~~l~~ad~vivv~~p~~-~sl~~~-~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 120 DSPAGIET--GALMALYFADEAIITTNPEV-SSVRDS-DRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred eCCCCccH--HHHHHHHhCCeEEEEcCCCc-hHHHhH-HHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 66554432 22345778999999988874 455554 55555554211 123456788888753
No 415
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=49.94 E-value=1.2e+02 Score=23.51 Aligned_cols=44 Identities=14% Similarity=-0.055 Sum_probs=23.7
Q ss_pred CcEEEEEEeCCChhhHHHH--HHHHHHHHhhhCCCCC-EEEEeeCCCc
Q 031934 20 ADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVP-VVLVGTKLDL 64 (150)
Q Consensus 20 ad~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~p-iilv~nK~D~ 64 (150)
++.+|+|- ..+..+.... ....++.+++...+.+ +-+|.||.|.
T Consensus 173 ad~VIVVt-~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~ 219 (329)
T cd02033 173 AQKVIVVG-SNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG 219 (329)
T ss_pred CceEEEeC-CchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC
Confidence 55555553 3344555432 1344555655433444 4589999884
No 416
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=49.62 E-value=90 Score=22.01 Aligned_cols=68 Identities=22% Similarity=0.299 Sum_probs=46.0
Q ss_pred CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 031934 19 GADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 96 (150)
Q Consensus 19 ~ad~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (150)
+||.+-++++.... ..++.. .+.+..+.+.+.+.|+.++.....+..+ ....+.+.+...|. .
T Consensus 82 GAdevdvv~~~g~~~~~~~~~~-~~ei~~v~~~~~g~~lkvI~e~~~l~~~-------------~i~~a~ria~e~Ga-D 146 (203)
T cd00959 82 GADEIDMVINIGALKSGDYEAV-YEEIAAVVEACGGAPLKVILETGLLTDE-------------EIIKACEIAIEAGA-D 146 (203)
T ss_pred CCCEEEEeecHHHHhCCCHHHH-HHHHHHHHHhcCCCeEEEEEecCCCCHH-------------HHHHHHHHHHHhCC-C
Confidence 79999999998732 233434 4556666666667888777766555311 34556677888886 8
Q ss_pred EEEec
Q 031934 97 YIECS 101 (150)
Q Consensus 97 ~~~~S 101 (150)
|+.+|
T Consensus 147 ~IKTs 151 (203)
T cd00959 147 FIKTS 151 (203)
T ss_pred EEEcC
Confidence 99998
No 417
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=49.19 E-value=62 Score=19.98 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=34.0
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031934 11 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 11 ~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 63 (150)
++...-+++|.++++-+-.....++.++ ....+.+.+...+-.-|+.|...|
T Consensus 27 pLl~~~i~~A~~vLvni~~~~d~~l~ev-~~~~~~i~~~~~~~a~ii~G~~id 78 (95)
T PF12327_consen 27 PLLDVDIKGAKGVLVNITGGPDLSLSEV-NEAMEIIREKADPDANIIWGASID 78 (95)
T ss_dssp TTSTS-GGG-SEEEEEEEE-TTS-HHHH-HHHHHHHHHHSSTTSEEEEEEEE-
T ss_pred ccccCChHHhceEEEEEEcCCCCCHHHH-HHHHHHHHHHhhcCceEEEEEEEC
Confidence 4555678899999999988877889888 888888887764333444554454
No 418
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=48.41 E-value=48 Score=20.16 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=24.6
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHH
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP 44 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~ 44 (150)
|+++... ......+..+|.++++.+.+ ..++..+ ..+++
T Consensus 46 D~p~~~~--~~~~~~l~~ad~viv~~~~~-~~s~~~~-~~~~~ 84 (104)
T cd02042 46 DTPPSLG--LLTRNALAAADLVLIPVQPS-PLDLDGL-EKLLE 84 (104)
T ss_pred eCcCCCC--HHHHHHHHHCCEEEEeccCC-HHHHHHH-HHHHH
Confidence 6666432 22235677899999999875 4455555 55544
No 419
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=48.15 E-value=29 Score=23.39 Aligned_cols=42 Identities=10% Similarity=-0.039 Sum_probs=24.0
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 031934 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 64 (150)
-..+.++++.|+........-...+.+++.. .. ++|.||+|+
T Consensus 117 ~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----ad-~ivlnk~dl 158 (158)
T cd03112 117 YLLDGVITLVDAKHANQHLDQQTEAQSQIAF----AD-RILLNKTDL 158 (158)
T ss_pred eeeccEEEEEEhhHhHHHhhccHHHHHHHHH----CC-EEEEecccC
Confidence 3578999999986543322111233344432 23 457799985
No 420
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=47.97 E-value=50 Score=21.33 Aligned_cols=44 Identities=27% Similarity=0.450 Sum_probs=24.6
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCC
Q 031934 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLD 63 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D 63 (150)
..++|.+|++=|+.+....... ..+.+.+.+. +..+ +++.|| .|
T Consensus 17 ~~~~D~vi~~GD~~~~~~~~~~-~~~~~~l~~~-~~~~~~~v~GN-HD 61 (135)
T cd07379 17 IPDGDVLIHAGDLTERGTLEEL-QKFLDWLKSL-PHPHKIVIAGN-HD 61 (135)
T ss_pred CCCCCEEEECCCCCCCCCHHHH-HHHHHHHHhC-CCCeEEEEECC-CC
Confidence 3578999999998875544332 3333333332 1222 346666 44
No 421
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=47.93 E-value=18 Score=27.13 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=25.6
Q ss_pred CCEEEEeeCCCc--ccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC
Q 031934 53 VPVVLVGTKLDL--REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 104 (150)
Q Consensus 53 ~piilv~nK~D~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 104 (150)
+|+++++|+.|. ..... .......++...+. +++.+||.-
T Consensus 196 KP~i~v~N~~e~d~~~~~~-----------~~~~~~~~~~~~~~-~~i~~sa~~ 237 (274)
T cd01900 196 KPVLYVANVSEDDLANGNN-----------KVLKVREIAAKEGA-EVIPISAKI 237 (274)
T ss_pred CCceeecccCHHHhccccH-----------HHHHHHHHHhcCCC-eEEEeeHHH
Confidence 899999999883 21111 22344455556665 899999874
No 422
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=47.48 E-value=39 Score=21.94 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=29.2
Q ss_pred HHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 031934 41 KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 100 (150)
Q Consensus 41 ~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 100 (150)
+....+.+. ..|++++|.-..... ..+++.++++..++ |++.+
T Consensus 3 ~~~~~L~~A--~rP~il~G~g~~~~~--------------a~~~l~~lae~~~~-Pv~~t 45 (137)
T PF00205_consen 3 EAADLLSSA--KRPVILAGRGARRSG--------------AAEELRELAEKLGI-PVATT 45 (137)
T ss_dssp HHHHHHHH---SSEEEEE-HHHHHTT--------------CHHHHHHHHHHHTS-EEEEE
T ss_pred HHHHHHHhC--CCEEEEEcCCcChhh--------------HHHHHHHHHHHHCC-CEEec
Confidence 344445543 689999997654322 67899999999998 77665
No 423
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=47.11 E-value=83 Score=23.64 Aligned_cols=88 Identities=11% Similarity=0.042 Sum_probs=50.2
Q ss_pred CCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031934 19 GADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
..+++++.+..+-.. .--++ +.++.+.+ -+.++-|.-|.|...... +.--.+.+++-...+++ .+
T Consensus 155 RVHcclyFi~ptGhsLrplDi--eflkrLt~---vvNvvPVIakaDtlTleE--------r~~FkqrI~~el~~~~i-~v 220 (336)
T KOG1547|consen 155 RVHCCLYFIPPTGHSLRPLDI--EFLKRLTE---VVNVVPVIAKADTLTLEE--------RSAFKQRIRKELEKHGI-DV 220 (336)
T ss_pred eEEEEEEEeCCCCCccCcccH--HHHHHHhh---hheeeeeEeecccccHHH--------HHHHHHHHHHHHHhcCc-cc
Confidence 368889888887532 22222 33344443 356777778999654321 11123445555566776 77
Q ss_pred EEeccCCCCCHHHHHHHHHHHHh
Q 031934 98 IECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 98 ~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
++-.+-+...-+..++.-++.++
T Consensus 221 YPq~~fded~ed~~lN~kvR~~i 243 (336)
T KOG1547|consen 221 YPQDSFDEDLEDKTLNDKVRESI 243 (336)
T ss_pred ccccccccchhHHHHHHHHHhhC
Confidence 77666665555666666665543
No 424
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=46.83 E-value=66 Score=23.65 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=45.0
Q ss_pred CCCEEEEeeCCCccccccc---------------ccCCCCCCc----cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHH
Q 031934 52 GVPVVLVGTKLDLREDKHY---------------LADHPGLVP----VTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~---------------~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 112 (150)
++|-|=|.+|.|+....+. ..++....+ -....+.++...++...|++....+.++|..++
T Consensus 164 E~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL 243 (273)
T KOG1534|consen 164 EVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIIL 243 (273)
T ss_pred cCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHH
Confidence 7999999999998765220 000111111 011234455566788889999999999999988
Q ss_pred HHHHHHHh
Q 031934 113 DAAIKVVI 120 (150)
Q Consensus 113 ~~l~~~~~ 120 (150)
..+-..+.
T Consensus 244 ~~ID~aiQ 251 (273)
T KOG1534|consen 244 SYIDDAIQ 251 (273)
T ss_pred HHHHHHHH
Confidence 88766664
No 425
>PRK00007 elongation factor G; Reviewed
Probab=46.46 E-value=50 Score=28.21 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=27.2
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 93 GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 93 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
.+.|++..||.++.|+..+++.+++.+..+.
T Consensus 253 ~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~ 283 (693)
T PRK00007 253 EIVPVLCGSAFKNKGVQPLLDAVVDYLPSPL 283 (693)
T ss_pred cEEEEEecccccCcCHHHHHHHHHHHCCChh
Confidence 4557888899999999999999999998764
No 426
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=45.96 E-value=90 Score=23.44 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=28.1
Q ss_pred CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031934 19 GADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 67 (150)
Q Consensus 19 ~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~ 67 (150)
..|++|++++++.. -+-.++ ...+.+. .-+++|-|..|+|....
T Consensus 113 RVH~cLYfI~pt~~~L~~~Di--~~mk~Ls---~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 113 RVHACLYFIPPTGHGLKPLDI--EFMKRLS---KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp -EEEEEEEE-TTSSSS-HHHH--HHHHHHT---TTSEEEEEESTGGGS-H
T ss_pred CcceEEEEEcCCCccchHHHH--HHHHHhc---ccccEEeEEecccccCH
Confidence 47899999998753 233333 3444444 45889999999998764
No 427
>PRK13695 putative NTPase; Provisional
Probab=45.19 E-value=95 Score=21.01 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=25.7
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031934 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 118 (150)
+.|++++.+|.. .......+....++ .++.+ +.+|-+++.+.+.+.
T Consensus 126 ~~~~i~v~h~~~-----------------~~~~~~~i~~~~~~-~i~~~---~~~~r~~~~~~~~~~ 171 (174)
T PRK13695 126 EKPVIATLHRRS-----------------VHPFVQEIKSRPGG-RVYEL---TPENRDSLPFEILNR 171 (174)
T ss_pred CCeEEEEECchh-----------------hHHHHHHHhccCCc-EEEEE---cchhhhhHHHHHHHH
Confidence 578888888743 22333344444554 56666 344555666665553
No 428
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=45.10 E-value=88 Score=20.60 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=42.1
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHc-CCcE
Q 031934 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-GASY 96 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~ 96 (150)
+..|.+++.+=.+|....+++ +..++.+. ++.+++++.......- .........++++.+ ++ .
T Consensus 49 ~~~d~vvi~lGtNd~~~~~nl-~~ii~~~~---~~~~ivlv~~~~~~~~-----------~~~~n~~~~~~a~~~~~v-~ 112 (150)
T cd01840 49 KLRKTVVIGLGTNGPFTKDQL-DELLDALG---PDRQVYLVNPHVPRPW-----------EPDVNAYLLDAAKKYKNV-T 112 (150)
T ss_pred CCCCeEEEEecCCCCCCHHHH-HHHHHHcC---CCCEEEEEECCCCcch-----------HHHHHHHHHHHHHHCCCc-E
Confidence 357999999999998766665 66665553 3578888776521110 011345667788888 54 6
Q ss_pred EEE
Q 031934 97 YIE 99 (150)
Q Consensus 97 ~~~ 99 (150)
++.
T Consensus 113 ~id 115 (150)
T cd01840 113 IID 115 (150)
T ss_pred Eec
Confidence 654
No 429
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=44.71 E-value=89 Score=21.74 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=30.2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCccc
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLRE 66 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~ 66 (150)
..+.+|.+|+|.+.... +...+ ..-++.+.+. +.++ -+|.||.+...
T Consensus 147 ~~~~~D~vilV~~~~~~-~~~~~-~~~~~~l~~~--~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 147 IARACDASILVTDAGEI-KKRDV-QKAKEQLEQT--GSNFLGVVLNKVDISV 194 (204)
T ss_pred HHHhCCeEEEEEECCCC-CHHHH-HHHHHHHHhC--CCCEEEEEEeCccccc
Confidence 34568999999998643 34444 4555555543 4454 58899998654
No 430
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=44.67 E-value=76 Score=23.30 Aligned_cols=95 Identities=12% Similarity=0.206 Sum_probs=51.0
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhH--HHHHHHHHHHHhh-hCCCCCEEEEeeCCCcccccccccCCCCCC
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASY--ENVLKKWIPELQH-YSPGVPVVLVGTKLDLREDKHYLADHPGLV 78 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~--~~~~~~~~~~i~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~ 78 (150)
||.|... .+....+..+|.+|+=.-.+..+.- -.. -.|+..+.+ ...++|.-++.|+..-.....
T Consensus 90 DleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t-~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~~--------- 157 (231)
T PF07015_consen 90 DLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKT-FKWVRRLEKAERRDIPAAVLFTRVPAARLTR--------- 157 (231)
T ss_pred eCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHH-HHHHHHHHHhhCCCCCeeEEEecCCcchhhH---------
Confidence 5555432 2234567789998887777743322 222 234444433 335899999999986321111
Q ss_pred ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHH
Q 031934 79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113 (150)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 113 (150)
.......+.. ++ |++.+.-....-..++|.
T Consensus 158 --~~~~~~e~~~--~l-pvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 158 --AQRIISEQLE--SL-PVLDTELHERDAFRAMFS 187 (231)
T ss_pred --HHHHHHHHHh--cC-CccccccccHHHHHHHHH
Confidence 1112223322 34 777777766655555555
No 431
>PLN02390 molybdopterin synthase catalytic subunit
Probab=43.86 E-value=73 Score=20.46 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=30.4
Q ss_pred cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEE
Q 031934 12 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV 56 (150)
Q Consensus 12 l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii 56 (150)
+.....-++.++|.|......+.|+.. ...++.++. .+||.
T Consensus 61 ~G~l~vge~~v~v~v~s~HR~~Af~A~-~~~id~lK~---~vPIW 101 (111)
T PLN02390 61 LGPVPVGETSVFVAVSSVHRADALDAC-KFLIDELKA---SVPIW 101 (111)
T ss_pred eecccCCCEEEEEEEECCCHHHHHHHH-HHHHHHHhh---cCCEE
Confidence 344455567788888888888899987 778888876 46765
No 432
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=43.83 E-value=88 Score=21.56 Aligned_cols=43 Identities=33% Similarity=0.553 Sum_probs=28.9
Q ss_pred cCCcEEEEEEeCCChh--------------------hHHHHHHHHHHHHhhhCCCCCEEEEee
Q 031934 18 RGADVFVLAFSLVSRA--------------------SYENVLKKWIPELQHYSPGVPVVLVGT 60 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~--------------------s~~~~~~~~~~~i~~~~~~~piilv~n 60 (150)
..+|++++.+=.+|.. .+..-+..++..+++..+++++++++.
T Consensus 67 ~~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~~ 129 (204)
T cd04506 67 KKADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVGL 129 (204)
T ss_pred ccCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4789999998888742 132223566667776667788887763
No 433
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=43.64 E-value=26 Score=26.53 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=35.6
Q ss_pred CCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 53 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 53 ~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
+|.+.+.||+|-..-+ +..- -+.+...+++||-++.|++++++.+-..+
T Consensus 232 Vp~iyvLNkIdsISiE---------------ELdi---i~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 232 VPCIYVLNKIDSISIE---------------ELDI---IYTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred eeeeeeecccceeeee---------------ccce---eeeccceeecccccccchHHHHHHHhhcc
Confidence 8999999999954422 2111 12334678999999999999999887655
No 434
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=42.38 E-value=77 Score=19.81 Aligned_cols=39 Identities=21% Similarity=0.441 Sum_probs=25.4
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEee
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~n 60 (150)
+.|. ++++.....++... .++.+.+++..++.++++.|.
T Consensus 51 ~pd~--V~iS~~~~~~~~~~-~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 51 RPDV--VGISVSMTPNLPEA-KRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp TCSE--EEEEESSSTHHHHH-HHHHHHHHTTCTTSEEEEEES
T ss_pred CCcE--EEEEccCcCcHHHH-HHHHHHHHhcCCCCEEEEECC
Confidence 4565 44455444555555 677777887777877777774
No 435
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=42.27 E-value=1.1e+02 Score=21.80 Aligned_cols=86 Identities=12% Similarity=0.152 Sum_probs=46.4
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHH---HHhhh---CCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHc
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIP---ELQHY---SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 92 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~---~i~~~---~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 92 (150)
..|++|++=|+.|....... ++|.+ .+... .++.|++.|.--=|...... ....+....+.+.+
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~-~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~---------~~~~~~v~RF~~~F 111 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIAND-DEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEE---------DPIESKIRRFEKYF 111 (195)
T ss_pred CCCEEEEeccccCCCCCCCH-HHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCC---------CcCHHHHHHHHHhh
Confidence 68999999999986543222 33433 33322 23678776654445543211 12455566666665
Q ss_pred CCcEEEEeccCCCCCHHHHHHH
Q 031934 93 GASYYIECSSKTQQNVKAVFDA 114 (150)
Q Consensus 93 ~~~~~~~~Sa~~~~~i~~~~~~ 114 (150)
=....+++.+..+.....++..
T Consensus 112 i~lsH~P~~~~~~~~~~~~~~~ 133 (195)
T cd08166 112 IMLSHVPLLAEGGQALKHVVTD 133 (195)
T ss_pred eeeecccccccccHHHHHHHHh
Confidence 3334556655555533333333
No 436
>CHL00175 minD septum-site determining protein; Validated
Probab=42.19 E-value=59 Score=24.01 Aligned_cols=58 Identities=9% Similarity=-0.089 Sum_probs=35.3
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~ 64 (150)
|||+.-. ......+..||.+++|.+.+ +.+..++ ...++.+.+.. ...+-+|.|+.+-
T Consensus 133 Dtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~-~~~~~~l~~~~-~~~~~lvvN~~~~ 190 (281)
T CHL00175 133 DCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDA-DRVAGLLEANG-IYNVKLLVNRVRP 190 (281)
T ss_pred eCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHH-HHHHHHHHHcC-CCceEEEEeccCh
Confidence 6665432 22234566789999988765 4455555 55666665532 2345678899874
No 437
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=41.60 E-value=1.2e+02 Score=21.06 Aligned_cols=84 Identities=11% Similarity=0.085 Sum_probs=55.4
Q ss_pred cEEEEEEeCCChhhH-------HHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC
Q 031934 21 DVFVLAFSLVSRASY-------ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 93 (150)
Q Consensus 21 d~~i~v~d~~~~~s~-------~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 93 (150)
++--+|+|-++..++ ...++.|. ..+...++..++++.|-..+.+... ..+.+..+-++.|
T Consensus 42 ~ikavVlDKDNcit~P~~~~Iwp~~l~~ie-~~~~vygek~i~v~SNsaG~~~~D~-----------d~s~Ak~le~k~g 109 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITAPYSLAIWPPLLPSIE-RCKAVYGEKDIAVFSNSAGLTEYDH-----------DDSKAKALEAKIG 109 (190)
T ss_pred CceEEEEcCCCeeeCCcccccCchhHHHHH-HHHHHhCcccEEEEecCcCccccCC-----------chHHHHHHHHhhC
Confidence 444566666653332 11113332 2233335688999999887765544 6678888888999
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHH
Q 031934 94 ASYYIECSSKTQQNVKAVFDAAIK 117 (150)
Q Consensus 94 ~~~~~~~Sa~~~~~i~~~~~~l~~ 117 (150)
+ |++.-|.+....-.|+.+....
T Consensus 110 I-pVlRHs~kKP~ct~E~~~y~~~ 132 (190)
T KOG2961|consen 110 I-PVLRHSVKKPACTAEEVEYHFG 132 (190)
T ss_pred C-ceEeecccCCCccHHHHHHHhC
Confidence 8 9999999998888877776654
No 438
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=41.30 E-value=75 Score=21.69 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=30.1
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 031934 20 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 62 (150)
Q Consensus 20 ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 62 (150)
-+++|+--..+.|.|+++- .+|+.+.--..+--.+++.|||-
T Consensus 84 y~vYivtaamdhp~s~~dK-~eWl~E~FPFi~~qn~vfCgnKn 125 (180)
T COG4502 84 YNVYIVTAAMDHPKSCEDK-GEWLKEKFPFISYQNIVFCGNKN 125 (180)
T ss_pred heEEEEEeccCCchhHHHH-HHHHHHHCCCCChhhEEEecCCC
Confidence 3666666666689999997 78887765444445688999874
No 439
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=41.08 E-value=9 Score=31.52 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=47.1
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc-c-----ccCCCCCCccCHHHHHHHHHHc
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH-Y-----LADHPGLVPVTTAQGEELRKQI 92 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~-~-----~~~~~~~~~v~~~~~~~~~~~~ 92 (150)
+--++..|.|.++.... +.+.+.......-.++.+||.|+..... + +.+.-+..-+....+......+
T Consensus 110 ~~~~~~~vvd~~d~p~~------i~p~~~~~v~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~ 183 (572)
T KOG1249|consen 110 NPALARKVVDLSDEPCS------IDPLLTNDVGSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDF 183 (572)
T ss_pred cccceEEeeecccCccc------cccchhhcccCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCccc
Confidence 44567778888775441 1222222222223699999999876543 1 0000000000000000000011
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 93 GASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 93 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
.+.....++++++.|+++++-.+....
T Consensus 184 ~f~~~~~~r~ktgyg~eeLI~~lvd~~ 210 (572)
T KOG1249|consen 184 DFDHVDLIRAKTGYGIEELIVMLVDIV 210 (572)
T ss_pred chhhhhhhhhhhcccHHHHHHHhhhee
Confidence 122345689999999999998887654
No 440
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=40.44 E-value=2.2e+02 Score=23.73 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=40.6
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE--eccCCCCCHHHHHHHHHHHHh
Q 031934 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE--CSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+.|+++..|+....++. ..+.+..++...+. ++.. .=++-|.|-.++-+.+++.+.
T Consensus 356 g~p~VVaiN~F~~Dt~~------------Ei~~v~~~~~~~g~-~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 356 GVPVVVAINKFSTDTDA------------ELALVRKLAEEAGA-FVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred CCCeEEEecCCCCCCHH------------HHHHHHHHHHHcCC-CEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 79999999998743332 34667788888886 5443 345668888888888887665
No 441
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=40.33 E-value=1.4e+02 Score=21.70 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=28.4
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCE-EEEeeCCCcc
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPV-VLVGTKLDLR 65 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~pi-ilv~nK~D~~ 65 (150)
.+..||.+|++... +..++..+ ...++.+.+. ..+.++ .+|.|+.+..
T Consensus 135 ~l~aAD~vlip~~~-~~~sl~~~-~~l~~~i~~~~~~~~l~~~gIV~N~~~~~ 185 (268)
T TIGR01281 135 PLQYADYALVVAAN-DFDALFAA-NRIAASVQEKAKNYDVRLAGIIGNRSDAT 185 (268)
T ss_pred chhhcCEEEEEecC-chhHHHHH-HHHHHHHHHHhhcCCCceEEEEEeCCChH
Confidence 46779999888765 34455544 4444444432 235554 4788998743
No 442
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=39.83 E-value=1.1e+02 Score=20.07 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=38.2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHH----hhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPEL----QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 91 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i----~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (150)
.+..||++|++-......---.+ +.++..+ .....++|+.++++--...... .....+..+...
T Consensus 67 ~l~~aD~iI~~sP~y~~~~s~~l-K~~lD~~~~~~~~~~~~K~~~~i~~~g~~~g~~-----------~~~~~l~~~~~~ 134 (152)
T PF03358_consen 67 KLKEADGIIFASPVYNGSVSGQL-KNFLDRLSCWFRRALRGKPVAIIAVGGGRRGGL-----------RALEQLRQILDY 134 (152)
T ss_dssp HHHHSSEEEEEEEEBTTBE-HHH-HHHHHTHHHTHTTTTTTSEEEEEEEESSSSTTH-----------HHHHHHHHHHHH
T ss_pred ceecCCeEEEeecEEcCcCChhh-hHHHHHhccccccccCCCEEEEEEEecCCcHHH-----------HHHHHHHHHHHH
Confidence 46789999999888763311111 3333333 2333578888776543322221 155667777777
Q ss_pred cCC
Q 031934 92 IGA 94 (150)
Q Consensus 92 ~~~ 94 (150)
+++
T Consensus 135 ~~~ 137 (152)
T PF03358_consen 135 LGM 137 (152)
T ss_dssp TTB
T ss_pred CCC
Confidence 775
No 443
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=39.31 E-value=51 Score=19.88 Aligned_cols=39 Identities=15% Similarity=0.501 Sum_probs=22.5
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031934 20 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 20 ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D 63 (150)
.|++++=++..+.... .+++.+++..+..|+|++.+..|
T Consensus 44 ~d~iiid~~~~~~~~~-----~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 44 PDLIIIDLELPDGDGL-----ELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp ESEEEEESSSSSSBHH-----HHHHHHHHHTTTSEEEEEESSTS
T ss_pred ceEEEEEeeecccccc-----ccccccccccccccEEEecCCCC
Confidence 4555555555553333 34445555556788888876554
No 444
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.14 E-value=1.4e+02 Score=25.05 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=36.2
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 031934 22 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 101 (150)
Q Consensus 22 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 101 (150)
..++|++.+. +..++ ...+..+.. ..+.-+|.||.|... ....+..+....++ ++..++
T Consensus 460 a~lLVLpAts--s~~Dl-~eii~~f~~---~~~~gvILTKlDEt~--------------~lG~aLsv~~~~~L-PI~yvt 518 (559)
T PRK12727 460 TSLLVLPANA--HFSDL-DEVVRRFAH---AKPQGVVLTKLDETG--------------RFGSALSVVVDHQM-PITWVT 518 (559)
T ss_pred CcEEEEECCC--ChhHH-HHHHHHHHh---hCCeEEEEecCcCcc--------------chhHHHHHHHHhCC-CEEEEe
Confidence 3566677664 33333 344444443 246779999999643 33555566666676 655544
Q ss_pred cCCCCCH
Q 031934 102 SKTQQNV 108 (150)
Q Consensus 102 a~~~~~i 108 (150)
. |..|
T Consensus 519 ~--GQ~V 523 (559)
T PRK12727 519 D--GQRV 523 (559)
T ss_pred C--CCCc
Confidence 3 4444
No 445
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=39.09 E-value=69 Score=23.93 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=62.1
Q ss_pred CCCCCcccccccccc------cccCCcEEEEE---EeC---CChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccc
Q 031934 1 MNVIGQEDYNRLRPL------SYRGADVFVLA---FSL---VSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRED 67 (150)
Q Consensus 1 wDt~G~e~~~~l~~~------~~~~ad~~i~v---~d~---~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~ 67 (150)
+|.|||-++-..+.. ++..-+.-+.+ .|. ++|..|-.. ++-.+.... -+.|-+=|..|+|+...
T Consensus 102 FDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK~Dl~~~ 178 (290)
T KOG1533|consen 102 FDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSKADLLKK 178 (290)
T ss_pred EeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhHhHHHHh
Confidence 589998875443321 23333333333 332 456666543 333333333 37888889999998654
Q ss_pred ccc--------------------ccCCCCCC--ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031934 68 KHY--------------------LADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 116 (150)
Q Consensus 68 ~~~--------------------~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 116 (150)
... .......+ .-..+++-.+.+.+++..|..++.-+.+++-.+...+-
T Consensus 179 ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~ID 249 (290)
T KOG1533|consen 179 YGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTID 249 (290)
T ss_pred hcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHH
Confidence 320 00000000 01224555677778887788888887777777666553
No 446
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.07 E-value=1.2e+02 Score=20.21 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=42.9
Q ss_pred cCCcEEEEEEeCCCh------hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH
Q 031934 18 RGADVFVLAFSLVSR------ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 91 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~------~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 91 (150)
..+|.+++.+-.+|. ..+..-+..++..+.+..++.+++++.. ......... ..+......+.+..+++.
T Consensus 47 ~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~-~p~~~~~~~---~~~~~~~~n~~l~~~a~~ 122 (169)
T cd01828 47 LQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSI-LPVGELKSI---PNEQIEELNRQLAQLAQQ 122 (169)
T ss_pred cCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEec-CCcCccCcC---CHHHHHHHHHHHHHHHHH
Confidence 357999999887773 3443334667777776666788777653 111100000 000001233456677788
Q ss_pred cCCcEEEEe
Q 031934 92 IGASYYIEC 100 (150)
Q Consensus 92 ~~~~~~~~~ 100 (150)
.++ +++.+
T Consensus 123 ~~~-~~id~ 130 (169)
T cd01828 123 EGV-TFLDL 130 (169)
T ss_pred CCC-EEEec
Confidence 886 77654
No 447
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=38.12 E-value=1.4e+02 Score=20.98 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=28.2
Q ss_pred CCcEEEEEEeCCC------hhhHHHHHHHHHHHHhhhCCCCCEEEEee
Q 031934 19 GADVFVLAFSLVS------RASYENVLKKWIPELQHYSPGVPVVLVGT 60 (150)
Q Consensus 19 ~ad~~i~v~d~~~------~~s~~~~~~~~~~~i~~~~~~~piilv~n 60 (150)
..+.+++.+=.+| .+.+..-+..++..+++..++.+++++..
T Consensus 89 ~pd~VvI~~G~ND~~~~~~~~~~~~~l~~ii~~l~~~~P~~~Iil~~~ 136 (214)
T cd01820 89 NPKVVVLLIGTNNIGHTTTAEEIAEGILAIVEEIREKLPNAKILLLGL 136 (214)
T ss_pred CCCEEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 5799999998887 33333223566666766667788887763
No 448
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=37.68 E-value=1.4e+02 Score=20.87 Aligned_cols=62 Identities=21% Similarity=0.427 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHH
Q 031934 32 RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 111 (150)
Q Consensus 32 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 111 (150)
++.-..+ ..|+.+++.. ++-+++|-|. .......+++.+++ +|+. .|+. -....
T Consensus 45 ~~~tpe~-~~W~~e~k~~--gi~v~vvSNn-------------------~e~RV~~~~~~l~v-~fi~-~A~K--P~~~~ 98 (175)
T COG2179 45 PDATPEL-RAWLAELKEA--GIKVVVVSNN-------------------KESRVARAAEKLGV-PFIY-RAKK--PFGRA 98 (175)
T ss_pred CCCCHHH-HHHHHHHHhc--CCEEEEEeCC-------------------CHHHHHhhhhhcCC-ceee-cccC--ccHHH
Confidence 3333444 7899999875 5667777663 44566677888887 6653 3332 34444
Q ss_pred HHHHHHHH
Q 031934 112 FDAAIKVV 119 (150)
Q Consensus 112 ~~~l~~~~ 119 (150)
|...++.+
T Consensus 99 fr~Al~~m 106 (175)
T COG2179 99 FRRALKEM 106 (175)
T ss_pred HHHHHHHc
Confidence 55544444
No 449
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=37.16 E-value=42 Score=19.60 Aligned_cols=24 Identities=13% Similarity=0.422 Sum_probs=16.4
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHH
Q 031934 22 VFVLAFSLVSRASYENVLKKWIPEL 46 (150)
Q Consensus 22 ~~i~v~d~~~~~s~~~~~~~~~~~i 46 (150)
.++++||+.+......+ .+.++..
T Consensus 3 ~~lv~YDi~~~k~~~kv-~k~L~~~ 26 (78)
T PF09827_consen 3 LYLVAYDISDNKRRNKV-RKILKSY 26 (78)
T ss_dssp EEEEEEEEHSHHHHHHH-HHHHHHT
T ss_pred EEEEEEECCCcHHHHHH-HHHHHHh
Confidence 57999999888666665 4444433
No 450
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=36.93 E-value=66 Score=23.00 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=33.9
Q ss_pred CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcc
Q 031934 2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLR 65 (150)
Q Consensus 2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~ 65 (150)
||++.-. ......+..||.+|++.+.+- .+..++ ......... .+.+ +.+|.|+.+..
T Consensus 115 D~p~~~~--~~~~~~l~~ad~vliv~~~~~-~s~~~~-~~~~~~~~~--~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 115 DAPAGLE--RDAVTALAAADELLLVVNPEI-SSITDA-LKTKIVAEK--LGTAILGVVLNRVTRD 173 (251)
T ss_pred eCCCccC--HHHHHHHHhCCeEEEEECCCC-chHHHH-HHHHHHHHh--cCCceEEEEEECCCch
Confidence 6666443 223345668999999998864 344444 233333332 2445 45899998753
No 451
>PRK13556 azoreductase; Provisional
Probab=36.87 E-value=63 Score=22.81 Aligned_cols=44 Identities=25% Similarity=0.250 Sum_probs=29.3
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--------------CCCCCEEEEee
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--------------SPGVPVVLVGT 60 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--------------~~~~piilv~n 60 (150)
-++.||++|+++..-+-.---. ++.|+..+... ..+.|++++.+
T Consensus 86 ~l~~AD~iVi~~P~yn~~~Pa~-LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~t 143 (208)
T PRK13556 86 QFLEADKVVFAFPLWNFTIPAV-LHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNA 143 (208)
T ss_pred HHHHCCEEEEeccccccCCcHH-HHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEe
Confidence 4678999999999887432222 36777776653 13567777665
No 452
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=36.48 E-value=50 Score=22.55 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=28.1
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-hCCCCCEEEEeeC
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTK 61 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~-~~~~~piilv~nK 61 (150)
-+..||++|++...-+..---. ++.|+..+.. ...++|++++++-
T Consensus 65 ~i~~AD~iIi~tP~Y~~s~~~~-LKn~lD~~~~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 65 AIESADLLVVGSPVYRGSYTGL-FKHLFDLVDPNALIGKPVLLAATG 110 (174)
T ss_pred HHHHCCEEEEECCcCcCcCcHH-HHHHHHhcCHhHhCCCEEEEEEec
Confidence 4668999999988776432222 2455544432 2247899888874
No 453
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=36.22 E-value=68 Score=24.31 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=30.9
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEee
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~n 60 (150)
++|+++++-....+.+.+.+ ..++..+.... +.|+| +-|
T Consensus 99 Gad~il~v~PyY~k~~~~gl-~~hf~~ia~a~-~lPvi-lYN 137 (299)
T COG0329 99 GADGILVVPPYYNKPSQEGL-YAHFKAIAEAV-DLPVI-LYN 137 (299)
T ss_pred CCCEEEEeCCCCcCCChHHH-HHHHHHHHHhc-CCCEE-EEe
Confidence 78999999999998888887 77888887766 78854 444
No 454
>PF01251 Ribosomal_S7e: Ribosomal protein S7e; InterPro: IPR000554 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of Xenopus S8, and mammalian, insect and yeast S7. These proteins have about 200 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_3 2XZM_3 3U5G_H 3U5C_H.
Probab=35.98 E-value=1.1e+02 Score=21.73 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=31.3
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031934 21 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 21 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
-++++-+..-...+|+.++..+..++.+..++..+++++...=+.
T Consensus 54 KAivIfVP~~~lk~f~KIq~rLv~ELEKKfsgk~Vv~iAqRrIl~ 98 (189)
T PF01251_consen 54 KAIVIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIAQRRILP 98 (189)
T ss_dssp EEEEEEE-CCCCHHHHHHCHHHHHHHHHCTTTCEEEEEE------
T ss_pred EEEEEEEcHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeccceEcC
Confidence 345555666678899999788899999999999999999766444
No 455
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=35.81 E-value=1.1e+02 Score=20.01 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=28.4
Q ss_pred cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEE
Q 031934 12 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV 56 (150)
Q Consensus 12 l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii 56 (150)
+.....-+.-.+|.|......+.|+.. +..++.++. ..|+.
T Consensus 72 ~G~l~vGe~~v~i~v~a~hR~~af~A~-~~~id~lK~---~~PiW 112 (124)
T cd00756 72 VGRLPPGEAIVLVAVSSPHRKEAFEAC-EFLIDRLKH---RAPIW 112 (124)
T ss_pred EcccCCCCEEEEEEEecCCHHHHHHHH-HHHHHHHHh---hCCEE
Confidence 334444456677777777777888887 788888887 46763
No 456
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=35.54 E-value=1.6e+02 Score=22.62 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=32.7
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
+.|++++..... .+.++...|+.+++ |.+.+...+..=+..+-..|...+.
T Consensus 82 ~~P~iIvt~~~~-----------------~p~~l~~~a~~~~i-pll~t~~~t~~~i~~l~~~L~~~la 132 (308)
T PRK05428 82 EPPCIIVTRGLE-----------------PPPELLEAAKEAGI-PLLRTPLSTTRLISKLTNYLDRKLA 132 (308)
T ss_pred CCCEEEEECcCC-----------------CCHHHHHHHHHcCC-cEEEeCCcHHHHHHHHHHHHHHHhh
Confidence 688888765332 45678899999998 8887766554444444444444443
No 457
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=35.23 E-value=1.4e+02 Score=19.92 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=27.3
Q ss_pred CCcEEEEEEeCCC------hhhHHHHHHHHHHHHhhhCCCCCEEEEe
Q 031934 19 GADVFVLAFSLVS------RASYENVLKKWIPELQHYSPGVPVVLVG 59 (150)
Q Consensus 19 ~ad~~i~v~d~~~------~~s~~~~~~~~~~~i~~~~~~~piilv~ 59 (150)
..+.+++++=.+| .+.+...+...++.++...++.+++++.
T Consensus 50 ~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~~~~~iil~~ 96 (171)
T cd04502 50 QPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKLPDTPIAIIS 96 (171)
T ss_pred CCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 6788899886655 2333333466677777666778888776
No 458
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=34.29 E-value=1.2e+02 Score=21.96 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=31.8
Q ss_pred ccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEe
Q 031934 17 YRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVG 59 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~ 59 (150)
..-||.||+|.+..- .+|....++.++..+++...+.|+.+-.
T Consensus 168 ~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGF 214 (268)
T KOG4175|consen 168 VEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAVGF 214 (268)
T ss_pred HHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeEee
Confidence 346899999998653 4555555588999999988888876543
No 459
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=34.01 E-value=57 Score=28.22 Aligned_cols=46 Identities=11% Similarity=0.147 Sum_probs=35.4
Q ss_pred ccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCC
Q 031934 7 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG 52 (150)
Q Consensus 7 e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~ 52 (150)
|+.+..+..+|...+.+++|+-.-+...+-.+-..|.++|..+...
T Consensus 196 ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~ 241 (1022)
T KOG0961|consen 196 EKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMST 241 (1022)
T ss_pred HHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhcccc
Confidence 4455566778888999999999888887777768898888776543
No 460
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=33.84 E-value=1.4e+02 Score=19.68 Aligned_cols=95 Identities=11% Similarity=0.010 Sum_probs=55.2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC-
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA- 94 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 94 (150)
|=..+.++=+.++..--.+ ..++.+++-.. -++++|-|.+.-+-.. .+..-.-..+.+.++....++
T Consensus 26 yp~~vRiIrv~CsGrvn~~------fvl~Al~~GaD--GV~v~GC~~geCHy~~----GN~ka~rR~~~lke~l~elgie 93 (132)
T COG1908 26 YPPNVRIIRVMCSGRVNPE------FVLKALRKGAD--GVLVAGCKIGECHYIS----GNYKAKRRMELLKELLKELGIE 93 (132)
T ss_pred CCCceEEEEeeccCccCHH------HHHHHHHcCCC--eEEEecccccceeeec----cchHHHHHHHHHHHHHHHhCCC
Confidence 3334555555555543222 23444554322 3778888877432211 000001123455566666665
Q ss_pred ---cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031934 95 ---SYYIECSSKTQQNVKAVFDAAIKVVIKP 122 (150)
Q Consensus 95 ---~~~~~~Sa~~~~~i~~~~~~l~~~~~~~ 122 (150)
..++.+||..++.+.+.++...+.+.+-
T Consensus 94 ~eRv~~~wiSa~E~ekf~e~~~efv~~i~~l 124 (132)
T COG1908 94 PERVRVLWISAAEGEKFAETINEFVERIKEL 124 (132)
T ss_pred cceEEEEEEehhhHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999999999988654
No 461
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.74 E-value=25 Score=24.69 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=9.5
Q ss_pred hhhhccCCCceee
Q 031934 127 KEKKKKQRGCLLN 139 (150)
Q Consensus 127 ~~~~~~~~~c~~~ 139 (150)
+.-||.++||.+|
T Consensus 186 KsAKK~NsCC~i~ 198 (198)
T KOG0861|consen 186 KSAKKTNSCCIIM 198 (198)
T ss_pred HHHhhcCCceecC
Confidence 4457788889875
No 462
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=33.00 E-value=62 Score=21.43 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=30.6
Q ss_pred cccccCCcEEEEEEeCCCh--hhH-------HHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031934 14 PLSYRGADVFVLAFSLVSR--ASY-------ENVLKKWIPELQHYSPGVPVVLVGTKLD 63 (150)
Q Consensus 14 ~~~~~~ad~~i~v~d~~~~--~s~-------~~~~~~~~~~i~~~~~~~piilv~nK~D 63 (150)
...+++||++|+.-..... .+. -.+..++.+.+.+.+++..++++.|=.|
T Consensus 64 ~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd 122 (141)
T PF00056_consen 64 YEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVD 122 (141)
T ss_dssp GGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHH
T ss_pred ccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHH
Confidence 4567899998887765432 122 2223667777778777766666665444
No 463
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=32.76 E-value=1.5e+02 Score=19.74 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=26.2
Q ss_pred CcEEEEEEeCCChh--------hHHHHHHHHHHHHhhhCCCCCEEEEe
Q 031934 20 ADVFVLAFSLVSRA--------SYENVLKKWIPELQHYSPGVPVVLVG 59 (150)
Q Consensus 20 ad~~i~v~d~~~~~--------s~~~~~~~~~~~i~~~~~~~piilv~ 59 (150)
+|++++.+-.+|.. .+...+...++.+++..++.+++++.
T Consensus 56 pd~vii~~G~ND~~~~~~~~~~~~~~~~~~li~~i~~~~p~~~i~~~~ 103 (169)
T cd01831 56 PDLVVINLGTNDFSTGNNPPGEDFTNAYVEFIEELRKRYPDAPIVLML 103 (169)
T ss_pred CCEEEEECCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 78999998888732 23222356677777766777776654
No 464
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=32.54 E-value=1e+02 Score=23.43 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=33.2
Q ss_pred ccCCcEEEEEEeCCChh---------hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031934 17 YRGADVFVLAFSLVSRA---------SYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~---------s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
+.+||.+|+....-... ....+...+.+.+.+..++..+|++.|=.|..
T Consensus 67 ~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~ 124 (305)
T TIGR01763 67 TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAM 124 (305)
T ss_pred hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHH
Confidence 67899999988753321 12222366777777777777788888877753
No 465
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.33 E-value=96 Score=28.50 Aligned_cols=50 Identities=28% Similarity=0.335 Sum_probs=31.4
Q ss_pred ccCCcEEEEEEeCCChhhHHH-----H---HHHHHHHHhhhC-CCCCEEEEeeCCCccc
Q 031934 17 YRGADVFVLAFSLVSRASYEN-----V---LKKWIPELQHYS-PGVPVVLVGTKLDLRE 66 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~-----~---~~~~~~~i~~~~-~~~piilv~nK~D~~~ 66 (150)
.+.-+|+|+..|+.+.-+... . +..-+.++...- -..|+.++.||.|+..
T Consensus 212 ~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 212 RRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 346799999999986322211 1 122233333222 3799999999999875
No 466
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.21 E-value=2.6e+02 Score=22.17 Aligned_cols=90 Identities=7% Similarity=-0.011 Sum_probs=50.9
Q ss_pred ccccc--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHH
Q 031934 14 PLSYR--GADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 90 (150)
Q Consensus 14 ~~~~~--~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 90 (150)
+..+. ..|++++.+.++.. -.-.++ . ..++....+++|-|..|+|....... ......+.+-..
T Consensus 122 R~~~~D~RVH~cLYFI~P~ghgL~p~Di--~---~Mk~l~~~vNiIPVI~KaD~lT~~El--------~~~K~~I~~~i~ 188 (366)
T KOG2655|consen 122 RSKIKDNRVHCCLYFISPTGHGLKPLDI--E---FMKKLSKKVNLIPVIAKADTLTKDEL--------NQFKKRIRQDIE 188 (366)
T ss_pred cccccCCceEEEEEEeCCCCCCCcHhhH--H---HHHHHhccccccceeeccccCCHHHH--------HHHHHHHHHHHH
Confidence 34444 57899999998764 222333 2 22333346888888899998765431 123445556666
Q ss_pred HcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031934 91 QIGASYYIECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 91 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
.+++ +++....... ++.+....+.+.
T Consensus 189 ~~nI-~vf~fp~~~~---d~~~~~~~~~l~ 214 (366)
T KOG2655|consen 189 EHNI-KVFDFPTDES---DEELKEEEQDLK 214 (366)
T ss_pred HcCc-ceecCCCCcc---hhhhHHHHHHHh
Confidence 7776 6555444433 444434444443
No 467
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.17 E-value=1.3e+02 Score=24.97 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=31.6
Q ss_pred ccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccc
Q 031934 17 YRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLRED 67 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~ 67 (150)
....|.+|+|-.+.-. ++.+.+ ..+-..+..... ..-=-++.+|+|...+
T Consensus 494 ~~~pd~i~~vgealvg~dsv~q~-~~fn~al~~~~~~r~id~~~ltk~dtv~d 545 (587)
T KOG0781|consen 494 VNKPDLILFVGEALVGNDSVDQL-KKFNRALADHSTPRLIDGILLTKFDTVDD 545 (587)
T ss_pred cCCCceEEEehhhhhCcHHHHHH-HHHHHHHhcCCCccccceEEEEeccchhh
Confidence 4568999999776643 466665 677666665531 1111367799997654
No 468
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=32.04 E-value=56 Score=21.21 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=27.3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 66 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~ 66 (150)
.+..+++.=|++-++....+ +.. -. ..++|++.|.+|..|..
T Consensus 43 ~a~LVviA~Dv~P~~~~~~l-~~l----c~-~~~vpyv~V~sk~~LG~ 84 (116)
T COG1358 43 KAKLVVIAEDVSPEELVKHL-PAL----CE-EKNVPYVYVGSKKELGK 84 (116)
T ss_pred CCcEEEEecCCCHHHHHHHH-HHH----HH-hcCCCEEEeCCHHHHHH
Confidence 47788888887655444443 222 22 23799999999887654
No 469
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=31.55 E-value=1.4e+02 Score=19.09 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=41.4
Q ss_pred HHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031934 40 KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119 (150)
Q Consensus 40 ~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~ 119 (150)
..+++.+.+. ++--+.+........ .++++.+.|+.+++ |.+++.. .....++.+.+.+.+
T Consensus 62 ~~~i~~L~~~--~~agL~i~~~~~~~~--------------iP~~~i~~A~~~~l-Pli~ip~--~~~f~~I~~~v~~~I 122 (123)
T PF07905_consen 62 REFIRELAEK--GAAGLGIKTGRYLDE--------------IPEEIIELADELGL-PLIEIPW--EVPFSDITREVMRAI 122 (123)
T ss_pred HHHHHHHHHC--CCeEEEEeccCcccc--------------CCHHHHHHHHHcCC-CEEEeCC--CCCHHHHHHHHHHHh
Confidence 5666666653 444455544333221 55888899999998 9999888 567788888777665
No 470
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=31.47 E-value=89 Score=23.74 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=28.1
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
++|+++++-...-+.+.+.+ ..+++.+....++.|+++=
T Consensus 103 Gad~vlv~~P~y~~~~~~~l-~~yf~~va~a~~~lPv~iY 141 (309)
T cd00952 103 GADGTMLGRPMWLPLDVDTA-VQFYRDVAEAVPEMAIAIY 141 (309)
T ss_pred CCCEEEECCCcCCCCCHHHH-HHHHHHHHHhCCCCcEEEE
Confidence 78999888776655666676 6777788776545787753
No 471
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.32 E-value=2.6e+02 Score=24.57 Aligned_cols=82 Identities=13% Similarity=-0.039 Sum_probs=43.4
Q ss_pred CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031934 19 GADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 19 ~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
..+-.++|.|.+.. ..+.+ ....+.....--+-=+|.||.|-.. ..-.+..+....++ |+
T Consensus 293 ~p~e~~LVLsAt~~~~~l~~----i~~~f~~~~~~~i~glIlTKLDEt~--------------~~G~iL~i~~~~~l-PI 353 (767)
T PRK14723 293 RPVRRLLLLNAASHGDTLNE----VVHAYRHGAGEDVDGCIITKLDEAT--------------HLGPALDTVIRHRL-PV 353 (767)
T ss_pred CCCeEEEEECCCCcHHHHHH----HHHHHhhcccCCCCEEEEeccCCCC--------------CccHHHHHHHHHCC-Ce
Confidence 35567889998742 33333 3333332211013347789999554 33455566666676 65
Q ss_pred EEeccCCCCCH-HHHHH----HHHHHHhC
Q 031934 98 IECSSKTQQNV-KAVFD----AAIKVVIK 121 (150)
Q Consensus 98 ~~~Sa~~~~~i-~~~~~----~l~~~~~~ 121 (150)
..++ +|++| +++.. .+++.++.
T Consensus 354 ~yit--~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 354 HYVS--TGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred EEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence 5544 35556 44332 44555554
No 472
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=31.26 E-value=91 Score=22.33 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031934 81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 116 (150)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 116 (150)
.-.+...+++..++ +++-+|+-.+.-|..+|+.++
T Consensus 77 ~fKef~e~ike~di-~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 77 GFKEFVEWIKEHDI-PFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cHHHHHHHHHHcCC-CEEEEeCCCchHHHHHHHhhc
Confidence 44677899999998 999999999999999998887
No 473
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=30.70 E-value=86 Score=20.42 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=20.4
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 031934 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 103 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 103 (150)
+.|.+++..... ....+.+.|+.+++ |++.++..
T Consensus 81 ~~P~iIvt~~~~-----------------~p~~l~e~a~~~~i-pll~t~~~ 114 (127)
T PF02603_consen 81 NPPCIIVTRGLE-----------------PPPELIELAEKYNI-PLLRTPLS 114 (127)
T ss_dssp T-S-EEEETTT--------------------HHHHHHHHHCT---EEEESS-
T ss_pred CCCEEEEECcCC-----------------CCHHHHHHHHHhCC-cEEEcCCc
Confidence 688888864432 66888899999997 88776654
No 474
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=30.64 E-value=1.2e+02 Score=19.83 Aligned_cols=43 Identities=12% Similarity=0.184 Sum_probs=24.6
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEee
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~n 60 (150)
.++.+|++|++ +----|++++...|.-........+|++++..
T Consensus 50 m~~~sda~I~l--PGG~GTl~El~~~~~~~~l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 50 MIESSDAFIAL--PGGIGTLDELFEALTLMQLGRHNKVPIILLNI 92 (133)
T ss_dssp HHHHESEEEEE--S-SHHHHHHHHHHHHHHHTTSSTS-EEEEEEC
T ss_pred HHHhCCEEEEE--ecCCchHHHHHHHHHHHhhccccCCCEEEeCC
Confidence 35578888877 44456777775555322223234458888864
No 475
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=30.51 E-value=3.3e+02 Score=22.98 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=39.0
Q ss_pred CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE--EeccCCCCCHHHHHHHHHHHHh
Q 031934 52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI--ECSSKTQQNVKAVFDAAIKVVI 120 (150)
Q Consensus 52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~Sa~~~~~i~~~~~~l~~~~~ 120 (150)
++|+++..|+.....+. ..+.+.+++...+. .+. ..=++-|.|-.++-+.+++.+-
T Consensus 401 g~pvVVaiN~F~~Dt~~------------Ei~~l~~~~~~~g~-~~~v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 401 GINPVVCINAFYTDTHA------------EIAIVRRLAEQAGA-RVAVSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred CCCeEEEeCCCCCCCHH------------HHHHHHHHHHHcCC-CEEEechhhccchhHHHHHHHHHHHhh
Confidence 79999999998743322 33566778888775 443 3345567888888888887665
No 476
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=30.48 E-value=1.2e+02 Score=20.43 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=39.6
Q ss_pred cCCcEEEEEEeCCChhh-------HHHHHHHHHHHHhhhCCCCCEEEEeeCCCc-ccccccccCCCCCCccCHHHHHHHH
Q 031934 18 RGADVFVLAFSLVSRAS-------YENVLKKWIPELQHYSPGVPVVLVGTKLDL-REDKHYLADHPGLVPVTTAQGEELR 89 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s-------~~~~~~~~~~~i~~~~~~~piilv~nK~D~-~~~~~~~~~~~~~~~v~~~~~~~~~ 89 (150)
..+|.+|+.+-.+|... +...+..+++.++ .++.+++++.. .+. ...... ....+......+.+..++
T Consensus 66 ~~~d~vii~~G~ND~~~~~~~~~~~~~~~~~~i~~i~--~~~~~vil~~~-~~~~~~~~~~-~~~~~~~~~~n~~l~~~a 141 (185)
T cd01832 66 LRPDLVTLLAGGNDILRPGTDPDTYRADLEEAVRRLR--AAGARVVVFTI-PDPAVLEPFR-RRVRARLAAYNAVIRAVA 141 (185)
T ss_pred cCCCEEEEeccccccccCCCCHHHHHHHHHHHHHHHH--hCCCEEEEecC-CCccccchhH-HHHHHHHHHHHHHHHHHH
Confidence 37899999887776532 2222256666665 24667766643 222 100000 000000011334566778
Q ss_pred HHcCCcEEEEec
Q 031934 90 KQIGASYYIECS 101 (150)
Q Consensus 90 ~~~~~~~~~~~S 101 (150)
+.+++ +++.+-
T Consensus 142 ~~~~v-~~vd~~ 152 (185)
T cd01832 142 ARYGA-VHVDLW 152 (185)
T ss_pred HHcCC-EEEecc
Confidence 88886 766543
No 477
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.27 E-value=75 Score=25.93 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=43.5
Q ss_pred CCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEe
Q 031934 4 IGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVG 59 (150)
Q Consensus 4 ~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~ 59 (150)
-|.-+|.-.|+--+++-++++=+|..++..|+-.- .++++.+.-..+|+--.+.+
T Consensus 219 IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrE-tEIYqTvmLRHENILgFIaa 273 (513)
T KOG2052|consen 219 IGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRE-TEIYQTVMLRHENILGFIAA 273 (513)
T ss_pred ecCccccceeeccccCCceEEEEecccchhhhhhH-HHHHHHHHhccchhhhhhhc
Confidence 47788999999999999999999999999988765 67777776655665444444
No 478
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=30.22 E-value=1.5e+02 Score=18.73 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=18.8
Q ss_pred HHHHHHHhhhCCCCCEEEEeeCCCc
Q 031934 40 KKWIPELQHYSPGVPVVLVGTKLDL 64 (150)
Q Consensus 40 ~~~~~~i~~~~~~~piilv~nK~D~ 64 (150)
...++.+.+..+..|+++++.+...
T Consensus 57 ~~~l~~l~~~~~~~Pvlllg~~~~~ 81 (109)
T PF06490_consen 57 AELLKELLKWAPHIPVLLLGEHDSP 81 (109)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcc
Confidence 4566667777788999999987654
No 479
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=30.22 E-value=1.1e+02 Score=22.92 Aligned_cols=39 Identities=13% Similarity=0.292 Sum_probs=28.4
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
++|+++++-...-+.+.+.+ ..++..+....++.|+++=
T Consensus 96 Gad~v~v~~P~y~~~~~~~i-~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 96 GYDCLSAVTPFYYKFSFPEI-KHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred CCCEEEEeCCcCCCCCHHHH-HHHHHHHHhhCCCCCEEEE
Confidence 78998887776777777776 6777777665556788754
No 480
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.55 E-value=1.8e+02 Score=19.64 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=27.2
Q ss_pred cCCcEEEEEEeCCC------hhhHHHHHHHHHHHHhhhCCCCCEEEEe
Q 031934 18 RGADVFVLAFSLVS------RASYENVLKKWIPELQHYSPGVPVVLVG 59 (150)
Q Consensus 18 ~~ad~~i~v~d~~~------~~s~~~~~~~~~~~i~~~~~~~piilv~ 59 (150)
...|++++.+=.+| ...+..-+..+++.++...++.+++++.
T Consensus 66 ~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~ 113 (191)
T cd01836 66 TRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTA 113 (191)
T ss_pred CCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 36788888776665 2334333366677777655678887765
No 481
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.44 E-value=1.4e+02 Score=23.91 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=35.7
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
..+..++|.+.+. ...++ ..++..+. ..| --+|.||.|-.. ..-.+..++...+. |+
T Consensus 315 ~p~~~~LVLsag~--~~~d~-~~i~~~f~----~l~i~glI~TKLDET~--------------~~G~~Lsv~~~tgl-PI 372 (407)
T PRK12726 315 HPDLTCFTFSSGM--KSADV-MTILPKLA----EIPIDGFIITKMDETT--------------RIGDLYTVMQETNL-PV 372 (407)
T ss_pred CCceEEEECCCcc--cHHHH-HHHHHhcC----cCCCCEEEEEcccCCC--------------CccHHHHHHHHHCC-CE
Confidence 3466677777632 22222 23333322 233 357889999543 33555666677776 65
Q ss_pred EEeccCCCCCHH
Q 031934 98 IECSSKTQQNVK 109 (150)
Q Consensus 98 ~~~Sa~~~~~i~ 109 (150)
..++. |++|.
T Consensus 373 sylt~--GQ~Vp 382 (407)
T PRK12726 373 LYMTD--GQNIT 382 (407)
T ss_pred EEEec--CCCCC
Confidence 55443 44444
No 482
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=29.35 E-value=1.4e+02 Score=22.72 Aligned_cols=49 Identities=16% Similarity=0.520 Sum_probs=32.6
Q ss_pred cccCCcEEEEEEeCCChh--h-HH------HHHHHHHHHHhhhCCCCCEEEEeeCCCc
Q 031934 16 SYRGADVFVLAFSLVSRA--S-YE------NVLKKWIPELQHYSPGVPVVLVGTKLDL 64 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~--s-~~------~~~~~~~~~i~~~~~~~piilv~nK~D~ 64 (150)
.+++||++|++......+ + .+ .+.....+.+.+..++..+|++.|=.|.
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~ 126 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDV 126 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHH
Confidence 478999999998853321 2 11 1226667777777777777788877774
No 483
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.22 E-value=2.5e+02 Score=22.19 Aligned_cols=86 Identities=13% Similarity=0.052 Sum_probs=42.0
Q ss_pred CCCCCccccccc----ccc--cccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCC--CEEEEeeCCCcccccccc
Q 031934 1 MNVIGQEDYNRL----RPL--SYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGV--PVVLVGTKLDLREDKHYL 71 (150)
Q Consensus 1 wDt~G~e~~~~l----~~~--~~~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~--piilv~nK~D~~~~~~~~ 71 (150)
.||+|...+... ... ....+.-.++|.+.+.. ....++...+........... +-=+|.||.|-..
T Consensus 221 IDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~----- 295 (374)
T PRK14722 221 IDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS----- 295 (374)
T ss_pred EcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC-----
Confidence 389995533221 111 12234456888888763 344443233322211110111 2347779999544
Q ss_pred cCCCCCCccCHHHHHHHHHHcCCcEEEEec
Q 031934 72 ADHPGLVPVTTAQGEELRKQIGASYYIECS 101 (150)
Q Consensus 72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 101 (150)
..-.+..+....++ |+..++
T Consensus 296 ---------~~G~~l~~~~~~~l-Pi~yvt 315 (374)
T PRK14722 296 ---------NLGGVLDTVIRYKL-PVHYVS 315 (374)
T ss_pred ---------CccHHHHHHHHHCc-CeEEEe
Confidence 33455566666665 554443
No 484
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=29.22 E-value=2.5e+02 Score=21.12 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=29.8
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
++|+++++-...-+.+.+.+ ..|+..+....++.|+++=
T Consensus 95 Gad~v~v~pP~y~~~~~~~l-~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 95 GADAAMVIVPYYNKPNQEAL-YDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred CCCEEEEcCccCCCCCHHHH-HHHHHHHHHhccCCCEEEE
Confidence 78999998887777777776 7788888776557887654
No 485
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=29.15 E-value=1.6e+02 Score=22.80 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=28.6
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEE
Q 031934 20 ADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVL 57 (150)
Q Consensus 20 ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piil 57 (150)
|--+++-||++.+...+.....+++.+...+ .++|+++
T Consensus 121 avK~Llyy~pD~~~~in~~k~a~vervg~eC~a~dipf~l 160 (324)
T PRK12399 121 AVKFLLYYDVDEPDEINEQKKAYIERIGSECVAEDIPFFL 160 (324)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence 3357888999988766665578888888766 4899876
No 486
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=28.96 E-value=1.2e+02 Score=23.87 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=23.1
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEee
Q 031934 22 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60 (150)
Q Consensus 22 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~n 60 (150)
+=++|+|+.+..+-..+ ..++.+++..+++|+| +||
T Consensus 121 vD~ivID~a~g~s~~~~--~~ik~ik~~~~~~~vi-aGN 156 (352)
T PF00478_consen 121 VDVIVIDSAHGHSEHVI--DMIKKIKKKFPDVPVI-AGN 156 (352)
T ss_dssp -SEEEEE-SSTTSHHHH--HHHHHHHHHSTTSEEE-EEE
T ss_pred CCEEEccccCccHHHHH--HHHHHHHHhCCCceEE-ecc
Confidence 33568999987766554 5566777777765555 777
No 487
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=28.39 E-value=2.3e+02 Score=20.47 Aligned_cols=43 Identities=14% Similarity=0.073 Sum_probs=24.8
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEE-EEeeCC
Q 031934 18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVV-LVGTKL 62 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~pii-lv~nK~ 62 (150)
.-||.+|++..++ +.++..+ ..+.+.+.... .+.++. +|.|+.
T Consensus 140 ~aaD~vlip~~p~-~~sl~~~-~~l~~~i~~~~~~~~~~l~gVv~n~~ 185 (270)
T cd02040 140 GKAQEIYIVTSGE-MMALYAA-NNICKGILKYAKSGGVRLGGLICNSR 185 (270)
T ss_pred ccccEEEEEecCc-hHHHHHH-HHHHHHHHHhCccCCCceEEEEEecC
Confidence 3589999998875 3455554 45554444332 245655 444553
No 488
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=28.29 E-value=1.4e+02 Score=23.40 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=26.6
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 031934 21 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 62 (150)
Q Consensus 21 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~ 62 (150)
.+=++|+|+.+..|...+ +.++.+++..|+.+ |++||=.
T Consensus 122 g~D~iviD~AhGhs~~~i--~~ik~ik~~~P~~~-vIaGNV~ 160 (346)
T PRK05096 122 ALNFICIDVANGYSEHFV--QFVAKAREAWPDKT-ICAGNVV 160 (346)
T ss_pred CCCEEEEECCCCcHHHHH--HHHHHHHHhCCCCc-EEEeccc
Confidence 344578899988777664 66677777777755 6666643
No 489
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.24 E-value=1.7e+02 Score=18.99 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=27.3
Q ss_pred cCCcEEEEEEeCCChh------h-HHHHHHHHHHHHhhhCCCCCEEEEe
Q 031934 18 RGADVFVLAFSLVSRA------S-YENVLKKWIPELQHYSPGVPVVLVG 59 (150)
Q Consensus 18 ~~ad~~i~v~d~~~~~------s-~~~~~~~~~~~i~~~~~~~piilv~ 59 (150)
..+|.+++.+=.+|.. . .+.+ ..+++.++...++.+++++.
T Consensus 39 ~~pd~vvi~~G~ND~~~~~~~~~~~~~~-~~~i~~i~~~~p~~~ii~~~ 86 (157)
T cd01833 39 AKPDVVLLHLGTNDLVLNRDPDTAPDRL-RALIDQMRAANPDVKIIVAT 86 (157)
T ss_pred CCCCEEEEeccCcccccCCCHHHHHHHH-HHHHHHHHHhCCCeEEEEEe
Confidence 3678999988777632 2 2333 67777777766777777654
No 490
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=28.20 E-value=1.3e+02 Score=19.80 Aligned_cols=38 Identities=24% Similarity=0.531 Sum_probs=26.4
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC---CCCEEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVL 57 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piil 57 (150)
.-||-|+..-++...+-..+ ..|++.+.+-.+ ++|+++
T Consensus 83 q~dGti~Amc~tg~~~~~sL-~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 83 QEDGTIFAMCMTGTSDKDSL-LSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred eccceEEEEEeccCCCHHHH-HHHHHHHHhhCCchhcceEEE
Confidence 35677777777766555555 789999988664 567664
No 491
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=28.16 E-value=98 Score=26.42 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=26.7
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031934 93 GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123 (150)
Q Consensus 93 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~ 123 (150)
.+.|++.-||.++.|+..+++.+++.+..+.
T Consensus 252 ~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~ 282 (689)
T TIGR00484 252 EFFPVLCGSAFKNKGVQLLLDAVVDYLPSPT 282 (689)
T ss_pred CEEEEEeccccCCccHHHHHHHHHHHCCCch
Confidence 3357788899999999999999999998764
No 492
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=28.14 E-value=1.4e+02 Score=21.03 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=24.9
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEee
Q 031934 24 VLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGT 60 (150)
Q Consensus 24 i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~n 60 (150)
++.++.+...+...+ ..+++.+++..+ ++++++.|.
T Consensus 136 ~v~lS~~~~~~~~~~-~~~i~~lr~~~~~~~~~i~vGG~ 173 (201)
T cd02070 136 ILGLSALMTTTMGGM-KEVIEALKEAGLRDKVKVMVGGA 173 (201)
T ss_pred EEEEeccccccHHHH-HHHHHHHHHCCCCcCCeEEEECC
Confidence 455566555667776 888888888765 666666664
No 493
>PRK13660 hypothetical protein; Provisional
Probab=28.11 E-value=1.6e+02 Score=20.78 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=23.3
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEE
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv 58 (150)
.+..+|++|++||...+.+-... -+......+ ..+.|++++
T Consensus 126 mv~~sd~~i~~YD~e~~Ggt~y~-~~~A~k~~~-~~~y~i~~I 166 (182)
T PRK13660 126 MLEHTDGALLVYDEENEGSPKYF-YEAAKKKQE-KEDYPLDLI 166 (182)
T ss_pred HHHccCeEEEEEcCCCCCChHHH-HHHHHHhhh-ccCceEEEe
Confidence 45679999999998765433222 122222211 136777776
No 494
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=28.07 E-value=2.6e+02 Score=20.97 Aligned_cols=102 Identities=10% Similarity=0.061 Sum_probs=49.9
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEE-EEeeCCCcccccccccCCCC---CCccCHHHHHHHHH
Q 031934 17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVV-LVGTKLDLREDKHYLADHPG---LVPVTTAQGEELRK 90 (150)
Q Consensus 17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~pii-lv~nK~D~~~~~~~~~~~~~---~~~v~~~~~~~~~~ 90 (150)
+..||.+|++.+.+ +.++..+ ...++.+... .++.++. +|.|+.+....-.......+ ...|.......-+.
T Consensus 136 l~~AD~viIp~~p~-~~sl~~~-~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~~~~~~~~~~~vl~~Ip~~~~v~~A~ 213 (290)
T CHL00072 136 LNYADYCIIITDNG-FDALFAA-NRIAASVREKARTHPLRLAGLVGNRTSKRDLIDKYVEACPMPVLEVLPLIEDIRVSR 213 (290)
T ss_pred hhcCCEEEEEecCC-HHHHHHH-HHHHHHHHHHhccCCCceEEEEEeCCCchhHHHHHHHHcCCceEEECCCChHHHHHH
Confidence 55699999988764 4455554 4554444432 2344443 78898873211000000000 00133333344445
Q ss_pred HcCCcEEEEeccCCCCC---HHHHHHHHHHHHhCC
Q 031934 91 QIGASYYIECSSKTQQN---VKAVFDAAIKVVIKP 122 (150)
Q Consensus 91 ~~~~~~~~~~Sa~~~~~---i~~~~~~l~~~~~~~ 122 (150)
..+. ++++.+... .+ ....+..+++.+.+.
T Consensus 214 ~~g~-pv~~~~p~s-~~~~~~a~~y~~La~ell~~ 246 (290)
T CHL00072 214 VKGK-TLFEMVESE-PSLNYVCDYYLNIADQLLSQ 246 (290)
T ss_pred hCCC-ceEEeCCCC-cchhHHHHHHHHHHHHHHhC
Confidence 5554 666655432 22 455567777766543
No 495
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=27.67 E-value=94 Score=20.03 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=22.5
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031934 20 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65 (150)
Q Consensus 20 ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~ 65 (150)
+-.+|+.=|++....-.++ ..+-+ . .++|++.+++|.++.
T Consensus 43 a~LVilA~D~s~~~~~~~i-~~lc~----~-~~Ip~~~~~sk~eLG 82 (117)
T TIGR03677 43 AKLVVIAEDVEPPEIVAHL-PALCE----E-KGIPYVYVKKKEDLG 82 (117)
T ss_pred ccEEEEeCCCCcHHHHHHH-HHHHH----H-cCCCEEEeCCHHHHH
Confidence 5566666665543333333 23322 1 379999999887653
No 496
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=27.60 E-value=2.3e+02 Score=21.18 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=32.4
Q ss_pred CCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031934 19 GADVFVLAFSLVS-RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 97 (150)
Q Consensus 19 ~ad~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 97 (150)
..+-.++|.|++. .... ..++..+... -+-=++.||.|-.. ..-.+..++...+. |+
T Consensus 184 ~~~~~~LVl~a~~~~~d~----~~~~~~f~~~---~~~~~I~TKlDet~--------------~~G~~l~~~~~~~~-Pi 241 (270)
T PRK06731 184 EPDYICLTLSASMKSKDM----IEIITNFKDI---HIDGIVFTKFDETA--------------SSGELLKIPAVSSA-PI 241 (270)
T ss_pred CCCeEEEEEcCccCHHHH----HHHHHHhCCC---CCCEEEEEeecCCC--------------CccHHHHHHHHHCc-CE
Confidence 4566788888763 3222 2333333321 22357789999554 22344455556665 55
Q ss_pred EEec
Q 031934 98 IECS 101 (150)
Q Consensus 98 ~~~S 101 (150)
..++
T Consensus 242 ~~it 245 (270)
T PRK06731 242 VLMT 245 (270)
T ss_pred EEEe
Confidence 4443
No 497
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=27.12 E-value=93 Score=23.17 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=41.7
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031934 19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 98 (150)
Q Consensus 19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 98 (150)
++|+++++-....+.+.+.+ ..|++.+... .+.|+++ -|.-..... .++.+.+.++++--++ .-+
T Consensus 96 Gad~v~v~~P~~~~~s~~~l-~~y~~~ia~~-~~~pi~i-Yn~P~~tg~-----------~ls~~~l~~L~~~~nv-~gi 160 (289)
T PF00701_consen 96 GADAVLVIPPYYFKPSQEEL-IDYFRAIADA-TDLPIII-YNNPARTGN-----------DLSPETLARLAKIPNV-VGI 160 (289)
T ss_dssp T-SEEEEEESTSSSCCHHHH-HHHHHHHHHH-SSSEEEE-EEBHHHHSS-----------TSHHHHHHHHHTSTTE-EEE
T ss_pred CceEEEEeccccccchhhHH-HHHHHHHHhh-cCCCEEE-EECCCcccc-----------CCCHHHHHHHhcCCcE-EEE
Confidence 78999998887777777777 7888888843 5678875 443221111 1355666666663333 344
Q ss_pred Eecc
Q 031934 99 ECSS 102 (150)
Q Consensus 99 ~~Sa 102 (150)
..|+
T Consensus 161 K~s~ 164 (289)
T PF00701_consen 161 KDSS 164 (289)
T ss_dssp EESS
T ss_pred EcCc
Confidence 4444
No 498
>PRK06242 flavodoxin; Provisional
Probab=27.08 E-value=97 Score=20.27 Aligned_cols=64 Identities=14% Similarity=0.000 Sum_probs=38.0
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031934 16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 94 (150)
Q Consensus 16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 94 (150)
-+.++|++++...+....-...+ ..++..+.. ..+.++++++|--- .... ....+...++..|+
T Consensus 40 ~~~~~d~ii~g~pvy~~~~~~~~-~~fl~~~~~-~~~k~~~~f~t~g~-~~~~------------~~~~l~~~l~~~g~ 103 (150)
T PRK06242 40 DLSEYDLIGFGSGIYFGKFHKSL-LKLIEKLPP-VSGKKAFIFSTSGL-PFLK------------YHKALKKKLKEKGF 103 (150)
T ss_pred cHhHCCEEEEeCchhcCCcCHHH-HHHHHhhhh-hcCCeEEEEECCCC-Ccch------------HHHHHHHHHHHCCC
Confidence 46688999998876543333333 455555433 24789999988532 1110 24566677777776
No 499
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=27.03 E-value=1.3e+02 Score=23.28 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=22.6
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEE
Q 031934 24 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 57 (150)
Q Consensus 24 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piil 57 (150)
++++|++++.+..- .+.++.+++..++.|++.
T Consensus 114 ~i~iD~a~gh~~~~--~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 114 YITIDIAHGHSDSV--INMIQHIKKHLPETFVIA 145 (326)
T ss_pred EEEEECCCCchHHH--HHHHHHHHhhCCCCeEEE
Confidence 67889999655543 567778887767766554
No 500
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=26.67 E-value=2.6e+02 Score=23.41 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=39.3
Q ss_pred eCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 031934 28 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 100 (150)
Q Consensus 28 d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 100 (150)
..+|++....+.....+.|.+. ..|+||++-+.+... ..++..+++...++ +++.+
T Consensus 188 ~~sd~e~~~e~i~~i~~lI~~a--k~p~ILad~~~~r~~--------------~~~~~~~l~~~t~~-p~~~~ 243 (557)
T COG3961 188 KTSDPEALSEVIDTIAELINKA--KKPVILADALVSRFG--------------LEKELKKLINATGF-PVATL 243 (557)
T ss_pred CCCCHHHHHHHHHHHHHHHhcc--CCcEEecchhhhhhh--------------hHHHHHHHHHhcCC-CeEEe
Confidence 4567777755546666666543 689999998887544 56788888998887 65544
Done!