BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031935
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 1 MESGYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVF 60
+ G++F P+D I ++D + +PWDLP + + +
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVD-LYKFDPWDLPERALFGARE--- 70
Query: 61 YFFYEPR-YKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVP 119
++F+ PR KY N +R +R G WK T D + G KK L FY K P
Sbjct: 71 WYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYA----GKAP 126
Query: 120 --VKTDWLMHEYHV 131
VKTDW+MHEY +
Sbjct: 127 RGVKTDWIMHEYRL 140
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 4 GYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
G++F P+D + I +ID + +PW LP ++ ++ ++F
Sbjct: 20 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLPNKALFGEKE---WYF 75
Query: 64 YEPR-YKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVP--V 120
+ PR KY N +R +R +G WK T D I G KK L FY K P
Sbjct: 76 FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI----GKAPKGT 131
Query: 121 KTDWLMHEYHV 131
KT+W+MHEY +
Sbjct: 132 KTNWIMHEYRL 142
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 4 GYKFQPSDXXXXXXXXXXXXNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFF 63
G++F P+D + I +ID + +PW LP ++ ++ ++F
Sbjct: 23 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEID-LYKFDPWVLPNKALFGEKE---WYF 78
Query: 64 YEPR-YKYRNSNRVDRRTEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVP--V 120
+ PR KY N +R +R +G WK T D I G KK L FY K P
Sbjct: 79 FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI----GKAPKGT 134
Query: 121 KTDWLMHEYHV 131
KT+W+MHEY +
Sbjct: 135 KTNWIMHEYRL 145
>pdb|4GB3|3 Chain 3, Human Coxsackievirus B3 Strain Rd Coat Protein
Length = 238
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 32 PIKDI-DHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRRTEAGQ------ 84
P++++ + + S+E + +P S S QVF F +P Y + V RT G+
Sbjct: 54 PVQNVGEKVNSMEAYQIPVRSNEGSGTQVFGFPLQPGY-----SSVFSRTLLGEILNYYT 108
Query: 85 -WKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVPVKTDWLMHEYHVKDDPHYEAVLKC 143
W + + + + G+ + T KFL Y P + P K M HV D ++ C
Sbjct: 109 HWSGSIKLTFMFCGSAM-ATGKFLLAY-SPPGAGAPTKRVDAMLGTHVVWDVGLQS--SC 164
Query: 144 TSLLP 148
+P
Sbjct: 165 VLCIP 169
>pdb|1COV|3 Chain 3, Coxsackievirus B3 Coat Protein
pdb|1JEW|3 Chain 3, Cryo-Em Structure Of Coxsackievirus B3(M Strain) With Its
Cellular Receptor, Coxsackievirus And Adenovirus
Receptor (Car)
Length = 238
Score = 32.7 bits (73), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 32 PIKDI-DHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRRTEAGQ------ 84
P++++ + + S+E + +P S S QVF F +P Y + V RT G+
Sbjct: 54 PVQNVGEKVNSMEAYQIPVRSNEGSGTQVFGFPLQPGY-----SSVFSRTLLGEILNYYT 108
Query: 85 -WKITSEDSHIEAGNGLTGTKKFLTFYCRGPDSKVPVKTDWLMHEYHVKDDPHYEAVLKC 143
W + + + + G+ + T KFL Y P + P K M HV D ++ C
Sbjct: 109 HWSGSIKLTFMFCGSAM-ATGKFLLAY-SPPGAGAPTKRVDAMLGTHVVWDVGLQS--SC 164
Query: 144 TSLLP 148
+P
Sbjct: 165 VLCIP 169
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 94 IEAGNGLTGTKKFLTFYCRG---PDSKVPVKTDWLMHEYHVKDD 134
+ GNG G + YC+G D K + D+L + V D+
Sbjct: 9 VVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDE 52
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 26.6 bits (57), Expect = 5.6, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 113 GPDSKVPVKTDWLMHEYHVKDDPH 136
GPDS VPVK +W HV D H
Sbjct: 1 GPDSMVPVKKEWA----HVVDLNH 20
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 26.2 bits (56), Expect = 6.5, Method: Composition-based stats.
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 105 KFLTFYCRGPDSKVPVKTDWLMHEYHVKDD 134
++LT +C P +P+ DW + + +D
Sbjct: 635 QYLTLHCSVPGGDLPLNIDWTLDGQAISED 664
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,829,843
Number of Sequences: 62578
Number of extensions: 189635
Number of successful extensions: 323
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 10
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)