Query 031935
Match_columns 150
No_of_seqs 105 out of 834
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 11:38:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031935.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031935hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 7E-57 2.4E-61 335.9 13.9 142 1-149 15-169 (174)
2 1ut7_A No apical meristem prot 100.0 1.2E-56 4.1E-61 334.2 13.1 142 1-149 17-166 (171)
3 3nr5_A MAF1, repressor of RNA 50.1 7.7 0.00026 27.9 1.9 13 33-46 119-131 (164)
4 3vdj_A Circumsporozoite (CS) p 39.9 20 0.00068 22.5 2.4 20 5-25 2-21 (77)
5 1ldd_A APC2WHB, anaphase promo 34.6 18 0.00061 22.4 1.6 25 2-27 37-63 (74)
6 1cmb_A Met APO-repressor; DNA- 29.2 68 0.0023 20.6 3.7 38 8-51 50-88 (104)
7 2oh5_A Polyhedrin, C-polyhedri 21.2 87 0.003 22.6 3.4 28 82-109 140-168 (248)
8 2cs7_A Pneumococcal histidine 16.4 31 0.0011 20.2 0.0 6 43-48 13-18 (55)
9 3dct_B Nuclear receptor coacti 16.0 66 0.0022 14.8 1.1 10 9-18 3-13 (21)
10 4dox_A Coat protein; all helix 14.0 72 0.0025 24.0 1.5 20 4-23 158-178 (226)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=7e-57 Score=335.87 Aligned_cols=142 Identities=32% Similarity=0.628 Sum_probs=126.2
Q ss_pred CCCCceecCCH-HHHHHHhHHhhcCCCCCCCCCeeecCcccCCCCCCCCCcccCCCCCceEEEEecccccccCCCccccc
Q 031935 1 MESGYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRR 79 (150)
Q Consensus 1 lp~G~rF~PtD-ELi~~yL~~k~~g~~~~~~~~I~~~D~vy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~g~r~~R~ 79 (150)
|||||||+||| |||.|||++|+.|.++ +.++|+++| ||.+|||+||+.+.. ++.+||||+++.+++++|.|.+|+
T Consensus 15 LPpGfRF~PTDeELV~~YL~~K~~g~~~-~~~~I~evD-vy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 15 LPPGFRFHPTDDELVEHYLCRKAAGQRL-PVPIIAEVD-LYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp CCTTCCCCCCHHHHHHHTHHHHHHTCCC-SSSCCEECC-GGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSCEE
T ss_pred CCCcceeCCCHHHHHHHHHHHHhcCCCC-CcCeeeecc-cccCCchhhhhhhcc--CCceEEEEeccccccCCCCCceee
Confidence 89999999999 9999999999999998 789999999 999999999988754 367999999999999999999999
Q ss_pred ccCceeEeccCceEEeeCCeEEeeeEEEEEEecC-CCCCCCCcCCeEEEEEEeCCCCC-----------CCcEEEEEEee
Q 031935 80 TEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRG-PDSKVPVKTDWLMHEYHVKDDPH-----------YEAVLKCTSLL 147 (150)
Q Consensus 80 ~~~G~W~~~g~~~~i~~~g~~iG~kk~l~f~~~~-~~~~~~~kt~W~M~EY~l~~~~~-----------~~~~VlCki~l 147 (150)
+++|+||++|+++.|.++|.+||+||+|+||.++ |+ +.+|+|+||||+|.++.. .+++||||||.
T Consensus 91 t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~---g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPR---GVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp ETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTS---CEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred cCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCC---CCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 9999999999999999889999999999999998 66 889999999999987632 46899999998
Q ss_pred cC
Q 031935 148 PI 149 (150)
Q Consensus 148 ~~ 149 (150)
+.
T Consensus 168 K~ 169 (174)
T 3ulx_A 168 KK 169 (174)
T ss_dssp SC
T ss_pred cC
Confidence 74
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.2e-56 Score=334.23 Aligned_cols=142 Identities=32% Similarity=0.624 Sum_probs=124.3
Q ss_pred CCCCceecCCH-HHHHHHhHHhhcCCCCCCCCCeeecCcccCCCCCCCCCcccCCCCCceEEEEecccccccCCCccccc
Q 031935 1 MESGYKFQPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTESKTESEDQVFYFFYEPRYKYRNSNRVDRR 79 (150)
Q Consensus 1 lp~G~rF~PtD-ELi~~yL~~k~~g~~~~~~~~I~~~D~vy~~~P~~L~~~~~~~~~~~~~yFF~~~~~~~~~g~r~~R~ 79 (150)
|||||||+||| |||.|||++|+.|.++ +.++|+++| ||.+|||+||+.... ++++||||+++.+++++|.|.+|+
T Consensus 17 lPpGfRF~PTDeELv~~YL~~K~~g~~~-~~~~I~e~D-iy~~~Pw~Lp~~~~~--g~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 17 LPPGFRFYPTDEELMVQYLCRKAAGYDF-SLQLIAEID-LYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp CCTTEEECCCHHHHHHHTHHHHHTTCCC-SSCCSEECC-GGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CCEE
T ss_pred CCCcceeCCChHHHHHHHHHHHhcCCCC-CCCeEeecc-cccCChhHhhchhhc--CCccEEEEeccccccCCCCccccc
Confidence 89999999999 9999999999999998 788999999 999999999988643 468999999999999999999999
Q ss_pred ccCceeEeccCceEEeeCCeEEeeeEEEEEEecC-CCCCCCCcCCeEEEEEEeCCCC------CCCcEEEEEEeecC
Q 031935 80 TEAGQWKITSEDSHIEAGNGLTGTKKFLTFYCRG-PDSKVPVKTDWLMHEYHVKDDP------HYEAVLKCTSLLPI 149 (150)
Q Consensus 80 ~~~G~W~~~g~~~~i~~~g~~iG~kk~l~f~~~~-~~~~~~~kt~W~M~EY~l~~~~------~~~~~VlCki~l~~ 149 (150)
+++|+||++|+++.|.+++.+||+|++|+||.++ ++ +.+|+|+||||+|.++. ..+++||||||.+.
T Consensus 93 t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~---g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~ 166 (171)
T 1ut7_A 93 AGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK---GTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166 (171)
T ss_dssp ETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTS---CEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred CCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCC---CCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcC
Confidence 9999999999999999989999999999999998 66 88999999999999764 35789999999875
No 3
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=50.13 E-value=7.7 Score=27.90 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=11.0
Q ss_pred eeecCcccCCCCCC
Q 031935 33 IKDIDHICSLEPWD 46 (150)
Q Consensus 33 I~~~D~vy~~~P~~ 46 (150)
+.+|| ||+++|..
T Consensus 119 l~dC~-IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECD-IYSYNPDL 131 (164)
T ss_dssp GGGCE-EEEECCCG
T ss_pred ccCCe-EEEEcCCC
Confidence 57899 99999983
No 4
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Probab=39.93 E-value=20 Score=22.47 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=15.3
Q ss_pred ceecCCHHHHHHHhHHhhcCC
Q 031935 5 YKFQPSDELILRLLKEKRLNP 25 (150)
Q Consensus 5 ~rF~PtDELi~~yL~~k~~g~ 25 (150)
+.|-||+|.|..||. ||.+.
T Consensus 2 ~~~~p~~~~i~~~l~-ki~~~ 21 (77)
T 3vdj_A 2 VEFEPSDKHIKEYLN-KIQNS 21 (77)
T ss_dssp CCCSCCHHHHHHHHH-HHTTT
T ss_pred ccccccHHHHHHHHH-HHhcc
Confidence 358899977788998 66654
No 5
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=34.64 E-value=18 Score=22.44 Aligned_cols=25 Identities=8% Similarity=0.050 Sum_probs=20.3
Q ss_pred CCCceecC-CH-HHHHHHhHHhhcCCCC
Q 031935 2 ESGYKFQP-SD-ELILRLLKEKRLNPHF 27 (150)
Q Consensus 2 p~G~rF~P-tD-ELi~~yL~~k~~g~~~ 27 (150)
|.|+.|+. |+ ||-. ||..++...-+
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 66889998 88 7755 99999988765
No 6
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=29.21 E-value=68 Score=20.62 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=28.9
Q ss_pred cCCH-HHHHHHhHHhhcCCCCCCCCCeeecCcccCCCCCCCCCcc
Q 031935 8 QPSD-ELILRLLKEKRLNPHFSQHHPIKDIDHICSLEPWDLPTES 51 (150)
Q Consensus 8 ~PtD-ELi~~yL~~k~~g~~~~~~~~I~~~D~vy~~~P~~L~~~~ 51 (150)
|-|. ||++.-...-..|+|+ |. +.| +-...|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPL-P~----D~D-l~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPL-PD----DAD-LRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCC-CC----GGG-GBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCC-CC----chh-hhhcCCccchHHH
Confidence 4688 8888766667889998 32 456 8889999998765
No 7
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=21.23 E-value=87 Score=22.57 Aligned_cols=28 Identities=14% Similarity=0.445 Sum_probs=22.6
Q ss_pred CceeEecc-CceEEeeCCeEEeeeEEEEE
Q 031935 82 AGQWKITS-EDSHIEAGNGLTGTKKFLTF 109 (150)
Q Consensus 82 ~G~W~~~g-~~~~i~~~g~~iG~kk~l~f 109 (150)
+--|.++| +-+.|..+|+++|+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 45699998 46678889999999987765
No 8
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=16.41 E-value=31 Score=20.17 Aligned_cols=6 Identities=17% Similarity=0.157 Sum_probs=2.6
Q ss_pred CCCCCC
Q 031935 43 EPWDLP 48 (150)
Q Consensus 43 ~P~~L~ 48 (150)
+|.++.
T Consensus 13 ~p~dIv 18 (55)
T 2cs7_A 13 NASDII 18 (55)
T ss_dssp CGGGCC
T ss_pred CHHHhe
Confidence 344443
No 9
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=16.00 E-value=66 Score=14.75 Aligned_cols=10 Identities=40% Similarity=0.590 Sum_probs=7.1
Q ss_pred CCH-HHHHHHh
Q 031935 9 PSD-ELILRLL 18 (150)
Q Consensus 9 PtD-ELi~~yL 18 (150)
+.| +|+.+.|
T Consensus 3 ~kdhqllryll 13 (21)
T 3dct_B 3 SKDHQLLRYLL 13 (26)
T ss_pred hhHHHHHHHHH
Confidence 678 8888544
No 10
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=14.00 E-value=72 Score=23.98 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=14.4
Q ss_pred CceecCCH-HHHHHHhHHhhc
Q 031935 4 GYKFQPSD-ELILRLLKEKRL 23 (150)
Q Consensus 4 G~rF~PtD-ELi~~yL~~k~~ 23 (150)
|..+.||+ |+|.|=..+++.
T Consensus 158 GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 158 GLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp CCSSCCCHHHHHHHHTC----
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 89999999 999986665443
Done!