BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031936
MSLMSSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEI
QLFLAVPAECSILKDELQKKPDSALFEIGCSQSVETNKFKDLLVRVQDGRAISKEDINGG
LKARKLIVNQMCKGYSVSNALKKEESLLLI

High Scoring Gene Products

Symbol, full name Information P value
AT4G39280 protein from Arabidopsis thaliana 1.1e-21

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031936
        (150 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2136328 - symbol:AT4G39280 species:3702 "Arabi...   259  1.1e-21   1


>TAIR|locus:2136328 [details] [associations]
            symbol:AT4G39280 species:3702 "Arabidopsis thaliana"
            [GO:0000049 "tRNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0004812 "aminoacyl-tRNA ligase activity"
            evidence=IEA] [GO:0004826 "phenylalanine-tRNA ligase activity"
            evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
            [GO:0005737 "cytoplasm" evidence=ISM;IEA] [GO:0006418 "tRNA
            aminoacylation for protein translation" evidence=IEA] [GO:0006432
            "phenylalanyl-tRNA aminoacylation" evidence=IEA;ISS] [GO:0043039
            "tRNA aminoacylation" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0009165 "nucleotide biosynthetic process"
            evidence=RCA] InterPro:IPR002319 InterPro:IPR004529
            InterPro:IPR006195 Pfam:PF01409 PROSITE:PS50862 GO:GO:0005829
            GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000049
            EMBL:AL161594 EMBL:AL050351 GO:GO:0004826 GO:GO:0006432
            EMBL:AY094460 EMBL:BT002310 IPI:IPI00517773 RefSeq:NP_195639.2
            UniGene:At.27786 ProteinModelPortal:Q9T034 SMR:Q9T034 STRING:Q9T034
            PaxDb:Q9T034 PRIDE:Q9T034 DNASU:830084 EnsemblPlants:AT4G39280.1
            GeneID:830084 KEGG:ath:AT4G39280 GeneFarm:2617 TAIR:At4g39280
            eggNOG:COG0016 HOGENOM:HOG000230294 InParanoid:Q9T034 KO:K01889
            PhylomeDB:Q9T034 ProtClustDB:PLN02853 Genevestigator:Q9T034
            GermOnline:AT4G39280 TIGRFAMs:TIGR00468 Uniprot:Q9T034
        Length = 485

 Score = 259 (96.2 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 71/133 (53%), Positives = 87/133 (65%)

Query:    22 SVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKP 81
             +VIK    F  +  QDIK+ET +LTDEGKKYAAEGS E+QLFLAVP E SI KDELQKK 
Sbjct:    35 NVIKSLHGFRYIDVQDIKKETWILTDEGKKYAAEGSPEVQLFLAVPEEGSISKDELQKKL 94

Query:    82 DSALFEIGCSQS-----VE-----TNKFKDLLVRVQDGRAIS----KE---DINGGLKAR 124
               A+F+IGCSQ+     VE     + K KD+  +V+ G+ +     KE   +    LKAR
Sbjct:    95 APAVFKIGCSQAGKNKWVEMGKQVSRKVKDVEDKVK-GQLLQIQQGKEFDKESINSLKAR 153

Query:   125 KLIVNQMCKGYSV 137
             KLIV Q+ KGYSV
Sbjct:   154 KLIVPQIWKGYSV 166


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.133   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      150       139   0.00091  102 3  11 22  0.46    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  495 (53 KB)
  Total size of DFA:  103 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.03u 0.16s 14.19t   Elapsed:  00:00:01
  Total cpu time:  14.03u 0.16s 14.19t   Elapsed:  00:00:01
  Start:  Fri May 10 07:44:38 2013   End:  Fri May 10 07:44:39 2013

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