BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031936
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L4G|A Chain A, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|C Chain C, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|E Chain E, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|G Chain G, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|I Chain I, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|K Chain K, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|M Chain M, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|O Chain O, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 508
Score = 31.6 bits (70), Expect = 0.16, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 36/135 (26%)
Query: 45 LTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKPDSALFEIGCSQSVETNKFKDLLV 104
LT EG++ A EGS E ++F ++P E + + EL + P ++G S+++ +NK+ +
Sbjct: 63 LTAEGEEIAREGSHEARVFRSIPPE-GLAQSELMRLPSG---KVGFSKAM-SNKWIRVDK 117
Query: 105 RVQDGRAI-----SKED--------INGG------------LKARKLIVN------QMCK 133
DG + S ED + GG L+ RKL+ + K
Sbjct: 118 SAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSK 177
Query: 134 GYSVSNALKKEESLL 148
G + S ++ K+E+ L
Sbjct: 178 GSAFSTSISKQETEL 192
>pdb|1PK5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|1PK5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|3F5C|A Chain A, Structure Of Dax-1:lrh-1 Complex
Length = 248
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 77 LQKKPDSALFEIG-CSQSVETNKFKDLLVRVQDGRAISKE--------DINGGLKARKLI 127
+Q++ ++AL + C+ +T KF LL+R+ + RAISK+ +NG + L+
Sbjct: 180 VQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPELRAISKQAEDYLYYKHVNGDVPYNNLL 239
Query: 128 VNQM 131
+ +
Sbjct: 240 IEML 243
>pdb|1ZH7|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
pdb|1ZH7|B Chain B, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
Length = 243
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 77 LQKKPDSALFEIG-CSQSVETNKFKDLLVRVQDGRAISKE--------DINGGLKARKLI 127
+Q++ ++AL + C+ +T KF LL+R+ + RAISK+ +NG + L+
Sbjct: 175 VQEQVNAALLDYTVCNYPQQTEKFGQLLLRLPEIRAISKQAEDYLYYKHVNGDVPYNNLL 234
Query: 128 VNQM 131
+ +
Sbjct: 235 IEML 238
>pdb|2DKA|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKA|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKC|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKC|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKD|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
pdb|2DKD|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
Length = 544
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 34 PAQDIKRETRVLTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKPDSALFEIGCSQS 93
P+ D + E L + K S++++ L++PA I +D + P ++ I QS
Sbjct: 103 PSNDSEGEKNSLVEVIKNLV----SDLKIDLSIPANVVIARDSRESSPALSMATIDGFQS 158
Query: 94 VETNKFKDL 102
V K++D
Sbjct: 159 VPNTKYQDF 167
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 28.9 bits (63), Expect = 1.3, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 42 TRVLTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKPDSALFEIGCSQSVETNKFKD 101
TRV+ D+G+ A + E+ L A AE + + EL + + + +SV + D
Sbjct: 362 TRVVGDDGRDVAPGETGELWLSGAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGD 421
Query: 102 LLVRVQDGR 110
L+ + DGR
Sbjct: 422 LVSELPDGR 430
>pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 352
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 73 LKDELQKKPDSALFEIG-CSQSVETNKFKDLLVRVQDGRAISKE--------DINGGLKA 123
L + +Q++ ++AL + C+ +T KF LL+R+ + RAIS + +NG +
Sbjct: 280 LVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPY 339
Query: 124 RKLIV 128
L++
Sbjct: 340 NNLLI 344
>pdb|2IVF|A Chain A, Ethylbenzene Dehydrogenase From Aromatoleum Aromaticum
Length = 976
Score = 27.7 bits (60), Expect = 2.8, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 84 ALFEIGCSQSVETNKFKD-----------LLVRVQDGRAISKEDINGG 120
A F +G SQ + K D LLVR+ G+ +S ED++GG
Sbjct: 304 AAFWLGLSQVMIDEKLFDRQFVCEQTDLPLLVRMDTGKFLSAEDVDGG 351
>pdb|4DOS|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Dlpc And A Fragment Of Tif-2
Length = 242
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 77 LQKKPDSALFEIG-CSQSVETNKFKDLLVRVQDGRAISKE--------DINGGLKARKLI 127
+Q++ ++AL + C+ +T KF LL+R+ + RAIS + +NG + L+
Sbjct: 177 VQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLL 236
Query: 128 V 128
+
Sbjct: 237 I 237
>pdb|1ZDU|A Chain A, The Crystal Structure Of Human Liver Receptor Homologue-1
Length = 245
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 77 LQKKPDSALFEIG-CSQSVETNKFKDLLVRVQDGRAISKE--------DINGGLKARKLI 127
+Q++ ++AL + C+ +T KF LL+R+ + RAIS + +NG + L+
Sbjct: 177 VQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLL 236
Query: 128 V 128
+
Sbjct: 237 I 237
>pdb|1YUC|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|1YUC|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|4DOR|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
pdb|4DOR|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
Length = 255
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 77 LQKKPDSALFEIG-CSQSVETNKFKDLLVRVQDGRAISKE--------DINGGLKARKLI 127
+Q++ ++AL + C+ +T KF LL+R+ + RAIS + +NG + L+
Sbjct: 187 VQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLL 246
Query: 128 V 128
+
Sbjct: 247 I 247
>pdb|1YOK|A Chain A, Crystal Structure Of Human Lrh-1 Bound With Tif-2 Peptide
And Phosphatidylglycerol
Length = 256
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 77 LQKKPDSALFEIG-CSQSVETNKFKDLLVRVQDGRAISKE--------DINGGLKARKLI 127
+Q++ ++AL + C+ +T KF LL+R+ + RAIS + +NG + L+
Sbjct: 188 VQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLL 247
Query: 128 VNQM 131
+ +
Sbjct: 248 IEML 251
>pdb|3PLZ|A Chain A, Human Lrh1 Lbd Bound To Gr470
pdb|3PLZ|B Chain B, Human Lrh1 Lbd Bound To Gr470
Length = 257
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 77 LQKKPDSALFEIG-CSQSVETNKFKDLLVRVQDGRAISKE--------DINGGLKARKLI 127
+Q++ ++AL + C+ +T KF LL+R+ + RAIS + +NG + L+
Sbjct: 189 VQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLL 248
Query: 128 VNQM 131
+ +
Sbjct: 249 IEML 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,441,903
Number of Sequences: 62578
Number of extensions: 119161
Number of successful extensions: 326
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 14
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)