BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031936
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9T034|SYFA_ARATH Probable phenylalanine--tRNA ligase alpha subunit OS=Arabidopsis
thaliana GN=At4g39280 PE=2 SV=3
Length = 485
Score = 120 bits (301), Expect = 3e-27, Method: Composition-based stats.
Identities = 74/133 (55%), Positives = 89/133 (66%), Gaps = 18/133 (13%)
Query: 22 SVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKP 81
+VIK F + QDIK+ET +LTDEGKKYAAEGS E+QLFLAVP E SI KDELQKK
Sbjct: 35 NVIKSLHGFRYIDVQDIKKETWILTDEGKKYAAEGSPEVQLFLAVPEEGSISKDELQKKL 94
Query: 82 DSALFEIGCSQS-----VE-----TNKFKDL-------LVRVQDGRAISKEDINGGLKAR 124
A+F+IGCSQ+ VE + K KD+ L+++Q G+ KE IN LKAR
Sbjct: 95 APAVFKIGCSQAGKNKWVEMGKQVSRKVKDVEDKVKGQLLQIQQGKEFDKESIN-SLKAR 153
Query: 125 KLIVNQMCKGYSV 137
KLIV Q+ KGYSV
Sbjct: 154 KLIVPQIWKGYSV 166
>sp|Q0W0X9|SYFA_UNCMA Phenylalanine--tRNA ligase alpha subunit OS=Uncultured methanogenic
archaeon RC-I GN=pheS PE=3 SV=1
Length = 495
Score = 36.2 bits (82), Expect = 0.076, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 44 VLTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKPDSAL 85
VLTDEG+KYAAEG E + A+PA+ L D ++ P + +
Sbjct: 59 VLTDEGRKYAAEGLPERVIHDALPADGITLNDLKKQFPPATV 100
>sp|A2ST81|SYFA_METLZ Phenylalanine--tRNA ligase alpha subunit OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=pheS
PE=3 SV=1
Length = 474
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 41 ETRVLTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKPDSALFEIGCSQSVETNKFK 100
E LT+EG+KYA EG E Q+ ++ + SI EL K P S + IG + K
Sbjct: 57 EQAKLTEEGEKYAKEGLPERQILNSI--DGSIPMSELTKNPLSKI-AIGWLRKKNWVTIK 113
Query: 101 DLLVRVQDGRAISKEDI 117
D +V V + A+ ++++
Sbjct: 114 DGIVFVNENTAVGEDEL 130
>sp|Q5RFA2|SYFA_PONAB Phenylalanine--tRNA ligase alpha subunit OS=Pongo abelii GN=FARSA
PE=2 SV=1
Length = 508
Score = 32.7 bits (73), Expect = 0.90, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 36/135 (26%)
Query: 45 LTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKPDSALFEIGCSQSVETNKFKDLLV 104
LT EG++ A EGS E ++F ++P E + + EL + P ++G S+++ +NK+ +
Sbjct: 63 LTAEGEEIAREGSHEARVFRSIPPE-GLAQSELMRLPSG---KVGFSKAM-SNKWIRVDK 117
Query: 105 RVQDGRAI-----SKED--------INGG------------LKARKLIVNQMCKGYSV-- 137
DG + S ED + GG L+ RKL+ + K Y V
Sbjct: 118 SAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVILKTYWVSK 177
Query: 138 ----SNALKKEESLL 148
S ++ K+E+ L
Sbjct: 178 GSAFSTSISKQETEL 192
>sp|Q6AZG6|SYFAA_XENLA Phenylalanine--tRNA ligase alpha subunit A OS=Xenopus laevis
GN=farsa-a PE=2 SV=1
Length = 498
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 38/136 (27%)
Query: 45 LTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKPDSALFEIGCSQSVETNKF----- 99
L+ EG++ EGS E ++F +P E +L+ +L K+P S ++G S+++ +NK+
Sbjct: 64 LSSEGEEIGREGSHEARVFQTLPKE-GLLQAQLMKQPFS---KVGFSKAM-SNKWIRLDK 118
Query: 100 -------------------KDLLVRVQDGRA--ISKEDINGGLKARKLIVNQMCKGYSV- 137
K+ L + GRA ++++D N LK RKL+ K Y V
Sbjct: 119 AAEGGPRIYRVVDSIEDTVKEKLQLILKGRADDVNEKDRN-ELKKRKLVNEVTVKSYWVT 177
Query: 138 -----SNALKKEESLL 148
S ++ K+E+ L
Sbjct: 178 KGSGFSTSITKQETDL 193
>sp|Q9Y285|SYFA_HUMAN Phenylalanine--tRNA ligase alpha subunit OS=Homo sapiens GN=FARSA
PE=1 SV=3
Length = 508
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 36/135 (26%)
Query: 45 LTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKPDSALFEIGCSQSVETNKFKDLLV 104
LT EG++ A EGS E ++F ++P E + + EL + P ++G S+++ +NK+ +
Sbjct: 63 LTAEGEEIAREGSHEARVFRSIPPE-GLAQSELMRLPSG---KVGFSKAM-SNKWIRVDK 117
Query: 105 RVQDGRAI-----SKED--------INGG------------LKARKLIVN------QMCK 133
DG + S ED + GG L+ RKL+ + K
Sbjct: 118 SAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSK 177
Query: 134 GYSVSNALKKEESLL 148
G + S ++ K+E+ L
Sbjct: 178 GSAFSTSISKQETEL 192
>sp|Q1JPX3|SYFA_DANRE Phenylalanine--tRNA ligase alpha subunit OS=Danio rerio GN=farsa
PE=2 SV=2
Length = 497
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 4 MSSSASTVSVTVDAQLNESVIKKF-GLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEIQL 62
+ S + ++ VD QL +K L + A+ + LT EG++ A +GS E ++
Sbjct: 21 VDSQDVSAALGVDHQLVVGAVKSLQALGEVISAEQKSSKHWELTGEGREIAEQGSHEARV 80
Query: 63 FLAVPAE 69
F A+PAE
Sbjct: 81 FNAIPAE 87
>sp|Q505J8|SYFA_RAT Phenylalanine--tRNA ligase alpha subunit OS=Rattus norvegicus
GN=Farsa PE=1 SV=1
Length = 508
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 30/119 (25%)
Query: 45 LTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKPDSALFEIGCSQSVET-------- 96
LT EG++ A EGS E ++F ++P E +++ EL + P ++G S+++
Sbjct: 63 LTTEGEEIAREGSHEARVFRSIPLE-GLVQSELMQLPSG---KVGFSKAMSNKWIRVDKS 118
Query: 97 ---------------NKFKDLLVRVQDGRA--ISKEDINGGLKARKLIVNQMCKGYSVS 138
++ + L +VQ G+A +++++ N L+ RKL+ + K Y VS
Sbjct: 119 AADGPRVFRVVDSIEDEVQRRLQQVQAGQAEKLAEKERN-ELRKRKLLTEVILKTYWVS 176
>sp|Q7SYV0|SYFAB_XENLA Phenylalanine--tRNA ligase alpha subunit B OS=Xenopus laevis
GN=farsa-b PE=2 SV=1
Length = 499
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 36/135 (26%)
Query: 45 LTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKPDSALFEIGCSQS----------- 93
L+ EG++ A GS E ++F ++P E +L+ EL K P ++G S++
Sbjct: 64 LSSEGEEIAQVGSHEARVFQSLPKE-GLLQAELMKLP---FAKVGFSKAMSNKWIRLDKA 119
Query: 94 ----------VET--NKFKDLLVRVQDGRA--ISKEDINGGLKARKLIVNQMCKGYSV-- 137
VET + K+ L + GRA ++++D N LK RKL+ K Y V
Sbjct: 120 AAGGPCVYRVVETIEDTVKEKLQLILKGRADDVNEKDKN-ELKKRKLVNEVTVKSYWVTK 178
Query: 138 ----SNALKKEESLL 148
S ++ K+E+ L
Sbjct: 179 GSGFSTSITKQETDL 193
>sp|Q8C0C7|SYFA_MOUSE Phenylalanine--tRNA ligase alpha subunit OS=Mus musculus GN=Farsa
PE=2 SV=1
Length = 508
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 45 LTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKPDSALFEIGCSQSVETNKFKDLLV 104
LT EG++ A EGS E ++F ++P E +++ EL P ++G S+++ +NK+ +
Sbjct: 63 LTTEGEEIAREGSHEARVFRSIPLE-GLVQSELMHLPSG---KVGFSKAM-SNKWIRVDK 117
Query: 105 RVQDG 109
DG
Sbjct: 118 SAADG 122
>sp|A6GZB7|OBG_FLAPJ GTPase obg OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC
49511) GN=obg PE=3 SV=1
Length = 335
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 35 AQDIKRETRVLTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQ 78
A DIK+E +L DE ++Y E + +L V ++C +L +ELQ
Sbjct: 252 ADDIKKEYDILLDELRRYNPEMLDKDRLI--VVSKCDMLDEELQ 293
>sp|Q5ZJQ2|SYFA_CHICK Phenylalanine--tRNA ligase alpha subunit OS=Gallus gallus GN=FARSA
PE=1 SV=1
Length = 443
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 35/130 (26%)
Query: 38 IKRETRV-----LTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKPDSALFEIGCSQ 92
I+ ETR L+ EG++ +GS E++LF +VP+E + + + K P + ++G S+
Sbjct: 54 IEAETRATTRWELSAEGEEVLRDGSPEVRLFRSVPSE-GLPQSDAMKLPGA---QVGFSK 109
Query: 93 SVETNKFKDLLVRVQDGRAISK-----EDI-----------NGG---------LKARKLI 127
++ NK+ L G I + +D+ NGG LK RKL+
Sbjct: 110 AM-ANKWLRLDKGAPGGPRIFRAVDAVQDVVQSSLRQVQEGNGGSLSERERTDLKRRKLL 168
Query: 128 VNQMCKGYSV 137
+ K Y +
Sbjct: 169 LEVTLKSYWI 178
>sp|Q66H04|FBX43_RAT F-box only protein 43 OS=Rattus norvegicus GN=Fbxo43 PE=2 SV=2
Length = 664
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 80 KPDSALFEIGCSQSVETNKFKDLLVRVQDGRAISKEDIN 118
K D LFE+ C +E N FKD + D +S D N
Sbjct: 195 KDDCGLFEVECLSPIEGNDFKDSVTHFSDS-GLSASDEN 232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,967,292
Number of Sequences: 539616
Number of extensions: 1662760
Number of successful extensions: 3718
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 3712
Number of HSP's gapped (non-prelim): 35
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)