Query 031936
Match_columns 150
No_of_seqs 109 out of 348
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:39:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l4g_A Phenylalanyl-tRNA synth 99.9 2.2E-28 7.5E-33 214.0 -0.1 135 7-146 24-184 (508)
2 2x4h_A Hypothetical protein SS 96.8 0.00055 1.9E-08 48.4 2.3 57 6-65 34-90 (139)
3 2qvo_A Uncharacterized protein 96.8 0.0019 6.5E-08 43.3 4.9 52 8-59 35-87 (95)
4 2nnn_A Probable transcriptiona 96.8 0.0018 6.2E-08 45.0 5.0 53 9-61 58-114 (140)
5 1tbx_A ORF F-93, hypothetical 96.8 0.0026 9.1E-08 42.5 5.5 51 10-60 33-84 (99)
6 3l7w_A Putative uncharacterize 96.7 0.0041 1.4E-07 43.0 6.0 51 13-63 36-91 (108)
7 3f8b_A Transcriptional regulat 96.6 0.0036 1.2E-07 44.0 5.3 51 13-63 43-99 (116)
8 3bdd_A Regulatory protein MARR 96.6 0.0027 9.4E-08 44.2 4.7 54 9-62 51-109 (142)
9 3hhh_A Transcriptional regulat 96.5 0.0055 1.9E-07 43.2 5.7 49 13-61 42-96 (116)
10 3hsr_A HTH-type transcriptiona 96.4 0.0035 1.2E-07 44.2 4.6 53 10-62 57-113 (140)
11 2bv6_A MGRA, HTH-type transcri 96.4 0.0039 1.3E-07 43.6 4.7 54 10-63 58-115 (142)
12 1r7j_A Conserved hypothetical 96.4 0.0024 8.2E-08 43.6 3.3 44 8-54 25-68 (95)
13 3oop_A LIN2960 protein; protei 96.4 0.0038 1.3E-07 43.9 4.3 52 10-61 58-113 (143)
14 3fm5_A Transcriptional regulat 96.3 0.0021 7.1E-08 45.7 2.9 54 8-61 59-116 (150)
15 3ri2_A Transcriptional regulat 96.3 0.0073 2.5E-07 43.1 5.7 51 13-63 48-103 (123)
16 4esf_A PADR-like transcription 96.3 0.007 2.4E-07 42.7 5.5 48 13-60 40-93 (117)
17 3eco_A MEPR; mutlidrug efflux 96.3 0.0047 1.6E-07 43.0 4.6 53 9-61 53-109 (139)
18 4esb_A Transcriptional regulat 96.3 0.0093 3.2E-07 41.8 6.0 50 13-62 38-93 (115)
19 3bpv_A Transcriptional regulat 96.3 0.0038 1.3E-07 43.3 3.9 51 10-60 50-104 (138)
20 2fbh_A Transcriptional regulat 96.3 0.0028 9.6E-08 44.3 3.2 52 9-60 58-113 (146)
21 3s2w_A Transcriptional regulat 96.2 0.005 1.7E-07 44.1 4.5 52 10-61 71-126 (159)
22 2fbi_A Probable transcriptiona 96.2 0.0077 2.6E-07 41.8 5.3 52 9-60 56-111 (142)
23 3f3x_A Transcriptional regulat 96.2 0.0057 2E-07 43.0 4.5 52 10-61 57-112 (144)
24 1xma_A Predicted transcription 96.2 0.01 3.5E-07 43.4 6.0 48 13-60 72-125 (145)
25 2gxg_A 146AA long hypothetical 96.2 0.0067 2.3E-07 42.4 4.8 51 10-60 57-111 (146)
26 2rdp_A Putative transcriptiona 96.2 0.0042 1.4E-07 43.8 3.7 53 9-61 62-118 (150)
27 2dql_A PEX protein; circadian 96.2 0.0072 2.5E-07 42.4 4.9 48 13-60 52-106 (115)
28 2a61_A Transcriptional regulat 96.1 0.0042 1.4E-07 43.4 3.6 51 9-59 53-107 (145)
29 1jgs_A Multiple antibiotic res 96.1 0.0027 9.2E-08 44.2 2.5 52 10-61 55-110 (138)
30 1lj9_A Transcriptional regulat 96.1 0.0035 1.2E-07 43.9 3.1 53 9-61 49-105 (144)
31 3bro_A Transcriptional regulat 96.1 0.0025 8.5E-08 44.4 2.3 52 9-60 56-111 (141)
32 2xzm_7 Plectin/S10 domain cont 96.1 0.005 1.7E-07 46.1 3.9 41 15-55 37-78 (162)
33 3e6m_A MARR family transcripti 96.1 0.0061 2.1E-07 43.9 4.4 52 10-61 74-129 (161)
34 2eth_A Transcriptional regulat 96.1 0.0049 1.7E-07 44.0 3.8 52 9-60 64-119 (154)
35 2pex_A Transcriptional regulat 96.1 0.0082 2.8E-07 42.6 5.0 54 10-63 68-125 (153)
36 2pg4_A Uncharacterized protein 96.1 0.0017 5.8E-08 43.4 1.2 56 7-62 34-92 (95)
37 3cjn_A Transcriptional regulat 96.0 0.0069 2.4E-07 43.4 4.4 51 10-60 73-127 (162)
38 3df8_A Possible HXLR family tr 96.0 0.0056 1.9E-07 42.5 3.7 44 10-53 49-93 (111)
39 3jw4_A Transcriptional regulat 96.0 0.0026 9E-08 45.0 2.0 53 9-61 63-119 (148)
40 3k0l_A Repressor protein; heli 96.0 0.0055 1.9E-07 44.2 3.8 53 9-61 66-122 (162)
41 1ub9_A Hypothetical protein PH 96.0 0.0053 1.8E-07 40.5 3.4 49 8-56 35-87 (100)
42 3nrv_A Putative transcriptiona 96.0 0.0026 8.8E-08 44.9 1.8 51 9-59 60-114 (148)
43 2co5_A Viral protein F93; vira 96.0 0.0063 2.2E-07 42.0 3.7 44 13-56 40-84 (99)
44 3elk_A Putative transcriptiona 95.9 0.014 4.7E-07 41.1 5.5 50 14-63 44-99 (117)
45 3b73_A PHIH1 repressor-like pr 95.9 0.0038 1.3E-07 44.0 2.5 46 7-54 31-78 (111)
46 3hrs_A Metalloregulator SCAR; 95.9 0.0027 9.3E-08 49.0 1.9 58 7-66 24-81 (214)
47 3nqo_A MARR-family transcripti 95.9 0.006 2.1E-07 45.5 3.8 55 7-61 61-119 (189)
48 4b8x_A SCO5413, possible MARR- 95.9 0.0051 1.8E-07 44.2 3.3 52 9-60 57-112 (147)
49 1bja_A Transcription regulator 95.9 0.0043 1.5E-07 42.9 2.7 53 5-60 32-85 (95)
50 3bja_A Transcriptional regulat 95.9 0.0071 2.4E-07 41.9 3.9 51 10-60 54-108 (139)
51 3kp7_A Transcriptional regulat 95.9 0.0032 1.1E-07 44.8 2.0 52 10-61 58-115 (151)
52 3deu_A Transcriptional regulat 95.9 0.0071 2.4E-07 44.1 3.9 52 9-60 74-129 (166)
53 2hr3_A Probable transcriptiona 95.8 0.0048 1.7E-07 43.3 2.8 52 9-60 56-111 (147)
54 4aik_A Transcriptional regulat 95.8 0.0069 2.4E-07 43.8 3.5 52 10-61 53-108 (151)
55 2qww_A Transcriptional regulat 95.8 0.0036 1.2E-07 44.4 1.8 51 9-59 61-117 (154)
56 1z7u_A Hypothetical protein EF 95.8 0.0086 3E-07 41.3 3.8 45 10-54 42-91 (112)
57 3g3z_A NMB1585, transcriptiona 95.8 0.0022 7.5E-08 45.2 0.7 52 10-61 52-107 (145)
58 3bj6_A Transcriptional regulat 95.7 0.0073 2.5E-07 42.6 3.4 51 10-60 61-115 (152)
59 2esh_A Conserved hypothetical 95.7 0.0095 3.3E-07 41.7 3.9 45 15-59 46-96 (118)
60 1s3j_A YUSO protein; structura 95.7 0.012 4E-07 41.7 4.4 51 10-60 58-112 (155)
61 3u5c_K 40S ribosomal protein S 95.7 0.0087 3E-07 42.0 3.4 43 13-55 35-78 (105)
62 1z91_A Organic hydroperoxide r 95.7 0.0087 3E-07 42.0 3.5 54 10-63 61-118 (147)
63 2p8t_A Hypothetical protein PH 95.7 0.0073 2.5E-07 46.9 3.3 44 8-54 35-78 (200)
64 2fa5_A Transcriptional regulat 95.6 0.0048 1.6E-07 44.2 1.9 53 9-61 69-125 (162)
65 3tgn_A ADC operon repressor AD 95.6 0.0048 1.6E-07 43.3 1.8 49 9-57 57-109 (146)
66 3u2r_A Regulatory protein MARR 95.5 0.014 4.9E-07 42.2 4.4 51 9-59 68-122 (168)
67 3ech_A MEXR, multidrug resista 95.5 0.004 1.4E-07 43.8 1.3 51 10-60 58-112 (142)
68 2qq9_A Diphtheria toxin repres 95.4 0.0071 2.4E-07 46.9 2.3 54 8-63 29-82 (226)
69 3cdh_A Transcriptional regulat 95.4 0.0069 2.4E-07 43.1 2.1 52 9-60 63-118 (155)
70 2hzt_A Putative HTH-type trans 95.3 0.015 5E-07 39.8 3.7 44 10-53 34-82 (107)
71 4hbl_A Transcriptional regulat 95.3 0.0063 2.2E-07 43.2 1.8 50 10-59 62-115 (149)
72 1yg2_A Gene activator APHA; vi 95.2 0.018 6.1E-07 43.0 4.1 43 13-55 33-81 (179)
73 2fsw_A PG_0823 protein; alpha- 95.2 0.023 7.8E-07 38.7 4.3 44 10-53 45-93 (107)
74 3boq_A Transcriptional regulat 95.1 0.012 4.1E-07 41.9 2.8 51 10-60 69-123 (160)
75 1on2_A Transcriptional regulat 95.1 0.0088 3E-07 42.3 2.0 55 7-63 26-80 (142)
76 1xmk_A Double-stranded RNA-spe 95.0 0.0096 3.3E-07 39.6 1.9 44 10-53 32-76 (79)
77 1yyv_A Putative transcriptiona 95.0 0.03 1E-06 39.9 4.6 44 10-53 55-103 (131)
78 2xvc_A ESCRT-III, SSO0910; cel 94.9 0.013 4.4E-07 36.9 2.2 27 10-36 32-58 (59)
79 2frh_A SARA, staphylococcal ac 94.9 0.008 2.7E-07 42.1 1.3 50 10-59 60-113 (127)
80 4fx0_A Probable transcriptiona 94.9 0.0067 2.3E-07 43.7 1.0 54 8-61 57-113 (148)
81 2nyx_A Probable transcriptiona 94.8 0.02 6.8E-07 41.5 3.4 51 10-60 66-120 (168)
82 2e1n_A PEX, period extender; c 94.8 0.019 6.5E-07 41.7 3.1 45 13-57 64-115 (138)
83 3l9f_A Putative uncharacterize 94.7 0.031 1E-06 43.2 4.2 42 13-54 67-114 (204)
84 1bm9_A RTP, TER, replication t 94.5 0.051 1.7E-06 39.1 4.7 45 11-55 48-102 (122)
85 1fx7_A Iron-dependent represso 94.4 0.017 5.8E-07 44.7 2.3 53 9-63 30-82 (230)
86 1okr_A MECI, methicillin resis 94.4 0.048 1.6E-06 37.3 4.3 44 15-58 40-85 (123)
87 4a5n_A Uncharacterized HTH-typ 94.1 0.044 1.5E-06 39.4 3.7 43 11-53 47-94 (131)
88 2f2e_A PA1607; transcription f 94.0 0.036 1.2E-06 40.1 3.1 44 10-53 44-90 (146)
89 3cta_A Riboflavin kinase; stru 93.9 0.045 1.6E-06 42.1 3.7 57 5-61 29-86 (230)
90 2fxa_A Protease production reg 93.7 0.049 1.7E-06 41.4 3.6 50 9-58 68-121 (207)
91 2obp_A Putative DNA-binding pr 93.4 0.069 2.4E-06 36.7 3.5 48 11-58 44-93 (96)
92 1sfx_A Conserved hypothetical 93.4 0.058 2E-06 35.5 3.1 49 10-58 41-92 (109)
93 2zfw_A PEX; five alpha-helices 93.3 0.014 4.7E-07 43.1 -0.1 45 13-57 74-125 (148)
94 2h09_A Transcriptional regulat 93.2 0.038 1.3E-06 39.6 2.1 49 8-58 59-107 (155)
95 2fbk_A Transcriptional regulat 93.0 0.0083 2.8E-07 44.1 -1.8 54 7-60 90-147 (181)
96 2oqg_A Possible transcriptiona 92.0 0.15 5.1E-06 34.3 3.7 51 9-59 40-91 (114)
97 1y0u_A Arsenical resistance op 91.8 0.042 1.4E-06 36.5 0.7 40 9-51 49-88 (96)
98 2wte_A CSA3; antiviral protein 91.5 0.075 2.6E-06 41.9 1.9 48 7-55 170-217 (244)
99 3cuo_A Uncharacterized HTH-typ 91.2 0.14 4.8E-06 33.4 2.8 45 10-54 45-90 (99)
100 1sd4_A Penicillinase repressor 91.1 0.86 2.9E-05 30.9 6.9 37 14-50 39-77 (126)
101 2l02_A Uncharacterized protein 91.0 0.1 3.4E-06 35.0 1.9 38 61-98 12-51 (82)
102 1p4x_A Staphylococcal accessor 90.6 0.085 2.9E-06 41.6 1.5 53 8-60 179-235 (250)
103 2rkh_A Putative APHA-like tran 90.5 0.062 2.1E-06 40.8 0.6 32 23-54 54-90 (180)
104 3f6o_A Probable transcriptiona 90.1 0.24 8.3E-06 34.1 3.3 54 8-61 36-90 (118)
105 3l09_A Putative transcriptiona 89.9 0.82 2.8E-05 36.7 6.7 52 11-64 53-105 (266)
106 3u1d_A Uncharacterized protein 89.9 0.43 1.5E-05 35.3 4.7 41 15-55 58-107 (151)
107 2l01_A Uncharacterized protein 89.7 0.14 4.7E-06 34.0 1.6 38 61-98 14-54 (77)
108 1hsj_A Fusion protein consisti 87.5 0.33 1.1E-05 40.6 3.0 49 8-56 425-477 (487)
109 3f6v_A Possible transcriptiona 86.8 0.55 1.9E-05 34.1 3.5 47 8-54 76-123 (151)
110 2ijl_A AGR_C_4647P, molybdenum 86.6 0.24 8E-06 35.8 1.4 51 5-55 40-95 (135)
111 2jsc_A Transcriptional regulat 86.5 0.66 2.3E-05 31.9 3.7 45 7-51 38-83 (118)
112 1p4x_A Staphylococcal accessor 86.4 0.34 1.2E-05 38.1 2.3 52 10-61 57-112 (250)
113 3jth_A Transcription activator 85.8 0.6 2E-05 30.6 3.0 44 10-53 43-87 (98)
114 2kko_A Possible transcriptiona 85.4 0.6 2E-05 31.6 2.9 43 10-52 45-88 (108)
115 3szp_A Transcriptional regulat 85.3 0.22 7.5E-06 37.4 0.7 54 5-58 17-70 (291)
116 2esn_A Probable transcriptiona 85.1 0.24 8E-06 38.0 0.8 54 5-58 26-79 (310)
117 1r1u_A CZRA, repressor protein 85.1 0.54 1.9E-05 31.5 2.6 43 9-51 45-88 (106)
118 2heo_A Z-DNA binding protein 1 84.6 0.35 1.2E-05 30.3 1.3 39 6-46 28-66 (67)
119 2h9b_A HTH-type transcriptiona 84.3 0.2 6.7E-06 38.9 0.0 54 5-58 17-70 (312)
120 2v79_A DNA replication protein 84.2 0.62 2.1E-05 33.4 2.7 42 7-48 55-102 (135)
121 3fxq_A LYSR type regulator of 83.6 0.24 8.1E-06 38.1 0.2 52 5-56 18-69 (305)
122 1ixc_A CBNR, LYSR-type regulat 83.6 0.16 5.5E-06 38.5 -0.8 52 5-56 17-68 (294)
123 1ku9_A Hypothetical protein MJ 83.1 0.33 1.1E-05 33.4 0.8 49 9-57 47-97 (152)
124 3pqk_A Biofilm growth-associat 82.6 0.28 9.7E-06 32.6 0.3 44 10-53 43-87 (102)
125 2o0m_A Transcriptional regulat 82.6 0.25 8.6E-06 40.3 0.0 45 7-54 38-82 (345)
126 2vn2_A DNAD, chromosome replic 82.5 0.62 2.1E-05 32.8 2.0 34 7-40 55-88 (128)
127 2d1h_A ST1889, 109AA long hypo 82.5 1.6 5.4E-05 28.3 4.0 44 10-53 43-93 (109)
128 1uth_A LYSR-type regulatory pr 82.3 0.26 9E-06 38.3 0.0 52 5-56 30-81 (315)
129 2h98_A HTH-type transcriptiona 82.2 0.27 9.1E-06 38.4 0.0 53 5-57 17-69 (313)
130 3mz1_A Putative transcriptiona 81.8 0.28 9.6E-06 36.9 0.0 53 5-57 14-66 (300)
131 1oyi_A Double-stranded RNA-bin 81.6 0.46 1.6E-05 31.7 1.0 41 9-49 36-76 (82)
132 1al3_A Cys regulon transcripti 81.5 0.29 1E-05 38.1 0.0 54 5-58 18-72 (324)
133 1u2w_A CADC repressor, cadmium 81.2 0.71 2.4E-05 31.9 1.9 45 8-52 61-106 (122)
134 1r1t_A Transcriptional repress 80.7 0.79 2.7E-05 31.9 2.0 44 7-50 63-107 (122)
135 2hgc_A YJCQ protein; SR346, st 80.7 0.67 2.3E-05 32.1 1.6 60 9-68 22-88 (102)
136 2dk5_A DNA-directed RNA polyme 80.5 0.87 3E-05 30.5 2.1 25 10-34 43-67 (91)
137 3isp_A HTH-type transcriptiona 80.3 0.51 1.8E-05 36.0 1.0 52 5-58 22-74 (303)
138 3fzv_A Probable transcriptiona 80.3 0.28 9.7E-06 37.3 -0.4 52 5-56 20-72 (306)
139 3hhg_A Transcriptional regulat 79.6 0.22 7.6E-06 37.9 -1.3 53 5-57 19-71 (306)
140 2g9w_A Conserved hypothetical 79.6 1.8 6.2E-05 30.2 3.7 37 14-50 39-78 (138)
141 4a6d_A Hydroxyindole O-methylt 78.4 1.8 6.1E-05 35.1 3.8 52 9-60 49-101 (353)
142 1sfu_A 34L protein; protein/Z- 78.0 1.6 5.4E-05 28.6 2.7 38 10-47 36-73 (75)
143 2qlz_A Transcription factor PF 77.3 2.5 8.6E-05 32.9 4.2 48 4-51 26-80 (232)
144 1qbj_A Protein (double-strande 76.5 1.4 4.8E-05 28.9 2.1 41 9-49 33-73 (81)
145 3b02_A Transcriptional regulat 75.5 2.3 7.7E-05 30.6 3.3 48 10-59 146-193 (195)
146 2p4w_A Transcriptional regulat 75.3 0.99 3.4E-05 34.4 1.3 42 10-51 35-82 (202)
147 3kfw_X Uncharacterized protein 74.2 2.9 9.9E-05 33.0 3.8 48 11-63 31-78 (247)
148 2lkp_A Transcriptional regulat 73.1 0.97 3.3E-05 30.6 0.7 41 7-47 49-90 (119)
149 3aaf_A Werner syndrome ATP-dep 72.8 4.2 0.00014 28.9 4.1 46 14-59 64-112 (134)
150 3mcz_A O-methyltransferase; ad 72.8 2.1 7E-05 34.1 2.7 48 10-60 63-110 (352)
151 1qgp_A Protein (double strande 71.4 1.5 5.1E-05 28.3 1.3 39 8-46 36-74 (77)
152 1q1h_A TFE, transcription fact 65.1 2.9 9.8E-05 27.8 1.7 31 6-36 36-66 (110)
153 4ev0_A Transcription regulator 64.0 8.1 0.00028 27.7 4.2 46 10-57 170-215 (216)
154 2zkz_A Transcriptional repress 62.1 6.4 0.00022 25.8 3.0 45 8-53 46-91 (99)
155 2y75_A HTH-type transcriptiona 62.1 3.3 0.00011 28.4 1.7 47 5-51 28-74 (129)
156 2zcw_A TTHA1359, transcription 61.1 9.2 0.00032 27.4 4.0 46 10-57 153-198 (202)
157 2htj_A P fimbrial regulatory p 60.4 2.1 7.2E-05 27.1 0.3 40 9-48 20-62 (81)
158 1p6r_A Penicillinase repressor 60.2 9.2 0.00032 23.9 3.5 25 14-38 38-62 (82)
159 3e6c_C CPRK, cyclic nucleotide 60.1 5.6 0.00019 29.7 2.8 49 10-60 184-232 (250)
160 3lmm_A Uncharacterized protein 59.0 4 0.00014 35.9 2.0 72 8-82 449-541 (583)
161 2r3s_A Uncharacterized protein 58.7 6.4 0.00022 30.7 3.0 47 10-59 46-92 (335)
162 4ham_A LMO2241 protein; struct 57.7 4.8 0.00016 28.0 1.9 35 9-43 44-78 (134)
163 3r0a_A Putative transcriptiona 55.6 8.2 0.00028 26.4 2.8 29 10-38 49-77 (123)
164 2b0l_A GTP-sensing transcripti 55.6 6.9 0.00024 26.3 2.3 30 8-37 48-77 (102)
165 2jt1_A PEFI protein; solution 55.4 5.5 0.00019 25.8 1.7 27 10-36 31-57 (77)
166 1x19_A CRTF-related protein; m 54.9 7.1 0.00024 31.1 2.7 46 10-58 71-116 (359)
167 2g7u_A Transcriptional regulat 53.8 12 0.0004 28.8 3.7 51 10-63 36-86 (257)
168 1b9m_A Protein (mode); DNA-bin 52.8 5.2 0.00018 30.5 1.5 50 5-55 36-91 (265)
169 2ek5_A Predicted transcription 50.7 9.3 0.00032 26.6 2.4 33 9-41 34-66 (129)
170 2k02_A Ferrous iron transport 50.6 8.2 0.00028 25.6 2.0 31 7-37 20-50 (87)
171 3tqn_A Transcriptional regulat 50.4 7.5 0.00026 26.3 1.9 32 9-40 39-70 (113)
172 2k4b_A Transcriptional regulat 50.2 13 0.00044 24.9 3.0 25 14-38 64-88 (99)
173 2xrn_A HTH-type transcriptiona 49.8 11 0.00036 28.8 2.8 47 8-55 26-72 (241)
174 1mkm_A ICLR transcriptional re 48.7 7.8 0.00027 29.7 1.9 42 8-51 28-69 (249)
175 2fmy_A COOA, carbon monoxide o 46.2 17 0.00057 26.3 3.3 39 10-50 174-213 (220)
176 1xn7_A Hypothetical protein YH 46.0 5.3 0.00018 25.8 0.5 31 6-36 19-49 (78)
177 3neu_A LIN1836 protein; struct 45.8 9.7 0.00033 26.2 1.9 37 9-45 43-79 (125)
178 2fu4_A Ferric uptake regulatio 45.2 20 0.00068 22.2 3.2 32 14-45 49-82 (83)
179 3by6_A Predicted transcription 43.6 11 0.00037 26.1 1.9 36 8-43 40-75 (126)
180 3dp7_A SAM-dependent methyltra 43.6 8.1 0.00028 31.1 1.3 47 9-59 56-102 (363)
181 3ic7_A Putative transcriptiona 42.9 15 0.00052 25.3 2.5 39 5-43 37-75 (126)
182 3e97_A Transcriptional regulat 42.7 14 0.00047 26.9 2.4 39 10-50 182-220 (231)
183 2o0y_A Transcriptional regulat 42.7 9 0.00031 29.6 1.4 40 10-51 45-84 (260)
184 3vhs_A ATPase wrnip1; zinc fin 41.6 1.6 5.5E-05 23.0 -2.1 8 56-63 1-8 (29)
185 1v4r_A Transcriptional repress 41.0 9.3 0.00032 25.0 1.1 31 8-38 40-70 (102)
186 3p9c_A Caffeic acid O-methyltr 40.4 12 0.00042 30.1 1.9 50 9-58 62-122 (364)
187 3k2z_A LEXA repressor; winged 39.8 7.4 0.00025 28.7 0.5 39 9-47 30-68 (196)
188 3dv8_A Transcriptional regulat 38.5 17 0.00058 26.0 2.3 38 10-49 176-213 (220)
189 2gau_A Transcriptional regulat 38.3 19 0.00064 26.1 2.5 39 10-50 187-225 (232)
190 1hw1_A FADR, fatty acid metabo 37.1 20 0.00068 26.7 2.5 34 10-43 38-71 (239)
191 3ihu_A Transcriptional regulat 36.8 15 0.0005 27.4 1.7 34 10-43 46-79 (222)
192 4g6q_A Putative uncharacterize 36.5 18 0.0006 26.6 2.1 42 10-51 43-91 (182)
193 2yu3_A DNA-directed RNA polyme 36.5 17 0.00058 24.5 1.8 27 12-38 62-88 (95)
194 1ylf_A RRF2 family protein; st 36.3 7 0.00024 27.7 -0.2 46 5-51 32-77 (149)
195 3pfi_A Holliday junction ATP-d 36.2 13 0.00046 28.9 1.5 51 9-63 285-336 (338)
196 3qph_A TRMB, A global transcri 35.6 5 0.00017 32.7 -1.1 41 7-47 36-76 (342)
197 3la7_A Global nitrogen regulat 35.3 20 0.00069 26.5 2.3 28 10-37 200-227 (243)
198 2vxz_A Pyrsv_GP04; viral prote 34.1 43 0.0015 24.8 3.8 44 9-54 30-74 (165)
199 3sxy_A Transcriptional regulat 34.1 14 0.00047 27.5 1.2 34 10-43 42-75 (218)
200 3d0s_A Transcriptional regulat 33.9 43 0.0015 24.0 3.9 38 10-49 184-221 (227)
201 3dkw_A DNR protein; CRP-FNR, H 32.9 18 0.00061 26.1 1.6 29 10-38 185-213 (227)
202 2hs5_A Putative transcriptiona 32.6 20 0.00067 27.2 1.9 34 10-43 58-91 (239)
203 3lst_A CALO1 methyltransferase 32.4 11 0.00038 29.9 0.5 43 10-55 62-104 (348)
204 2cfx_A HTH-type transcriptiona 32.4 13 0.00045 25.8 0.8 29 7-35 23-51 (144)
205 1hqc_A RUVB; extended AAA-ATPa 31.4 18 0.00062 27.8 1.5 54 7-63 268-322 (324)
206 3fx3_A Cyclic nucleotide-bindi 31.3 47 0.0016 24.0 3.8 48 10-60 185-232 (237)
207 2pn6_A ST1022, 150AA long hypo 30.9 11 0.00038 26.1 0.2 29 7-35 21-49 (150)
208 3c7j_A Transcriptional regulat 30.8 22 0.00075 27.0 1.9 32 10-41 56-87 (237)
209 3reo_A (ISO)eugenol O-methyltr 30.5 42 0.0014 26.9 3.6 41 18-58 78-124 (368)
210 2w25_A Probable transcriptiona 30.3 15 0.00052 25.5 0.8 29 7-35 25-53 (150)
211 2lnb_A Z-DNA-binding protein 1 30.2 19 0.00066 23.7 1.2 36 9-46 40-75 (80)
212 2bgc_A PRFA; bacterial infecti 29.8 29 0.00098 25.5 2.3 42 10-53 176-218 (238)
213 1ft9_A Carbon monoxide oxidati 29.8 22 0.00074 25.7 1.6 29 10-38 170-198 (222)
214 2ia2_A Putative transcriptiona 28.9 22 0.00074 27.4 1.6 36 10-48 43-78 (265)
215 2p5v_A Transcriptional regulat 28.7 17 0.00058 25.7 0.8 28 8-35 29-56 (162)
216 3t8r_A Staphylococcus aureus C 28.3 9 0.00031 27.1 -0.7 46 5-50 30-75 (143)
217 2di3_A Bacterial regulatory pr 27.4 18 0.00063 27.1 0.9 30 9-38 34-65 (239)
218 3i53_A O-methyltransferase; CO 26.9 12 0.0004 29.4 -0.4 46 9-56 44-89 (332)
219 2dbb_A Putative HTH-type trans 26.7 17 0.00057 25.3 0.5 28 7-34 27-54 (151)
220 1zg3_A Isoflavanone 4'-O-methy 26.5 61 0.0021 25.6 3.9 48 10-58 52-110 (358)
221 2ip2_A Probable phenazine-spec 26.0 26 0.0009 27.2 1.6 45 10-58 48-92 (334)
222 1tw3_A COMT, carminomycin 4-O- 26.0 20 0.0007 28.2 0.9 46 10-58 59-104 (360)
223 3r4k_A Transcriptional regulat 25.8 31 0.001 26.5 1.9 39 10-49 28-66 (260)
224 3mq0_A Transcriptional repress 25.8 22 0.00074 27.7 1.0 38 10-49 52-89 (275)
225 3r8n_O 30S ribosomal protein S 25.2 26 0.0009 23.3 1.2 23 54-81 20-42 (88)
226 2ia0_A Putative HTH-type trans 25.0 21 0.00073 25.7 0.8 28 8-35 36-63 (171)
227 3edp_A LIN2111 protein; APC883 24.8 37 0.0013 25.7 2.2 35 9-43 39-73 (236)
228 2cg4_A Regulatory protein ASNC 24.6 17 0.00057 25.4 0.1 29 7-35 26-54 (152)
229 1a32_A Ribosomal protein S15; 24.5 27 0.00094 23.2 1.2 11 54-64 20-30 (88)
230 3u5c_T 40S ribosomal protein S 24.4 33 0.0011 24.9 1.7 37 16-54 97-133 (144)
231 2v7f_A RPS19, RPS19E SSU ribos 24.4 34 0.0012 24.7 1.8 37 15-53 93-129 (150)
232 4a5u_B 30S ribosomal protein S 24.3 28 0.00096 23.2 1.2 23 54-81 20-42 (88)
233 2vqe_O 30S ribosomal protein S 24.2 27 0.00093 23.3 1.1 23 54-81 21-43 (89)
234 3iz6_S 40S ribosomal protein S 24.1 87 0.003 22.7 3.9 39 15-55 98-136 (146)
235 1fp1_D Isoliquiritigenin 2'-O- 23.8 24 0.00083 28.2 1.0 48 10-58 69-128 (372)
236 1o5l_A Transcriptional regulat 23.7 17 0.00057 26.3 0.0 29 10-38 171-199 (213)
237 3f8m_A GNTR-family protein tra 23.5 45 0.0016 25.4 2.5 31 9-40 42-72 (248)
238 3ulw_A 30S ribosomal protein S 23.0 31 0.0011 23.2 1.3 12 54-65 24-35 (93)
239 1fp2_A Isoflavone O-methyltran 22.8 42 0.0014 26.5 2.2 48 10-58 58-108 (352)
240 1wi9_A Protein C20ORF116 homol 22.5 22 0.00075 22.9 0.4 26 10-35 28-53 (72)
241 1i1g_A Transcriptional regulat 22.4 15 0.0005 25.1 -0.5 27 8-34 23-49 (141)
242 3bwg_A Uncharacterized HTH-typ 22.4 45 0.0015 25.2 2.2 31 9-39 35-65 (239)
243 3lwf_A LIN1550 protein, putati 22.2 29 0.001 25.1 1.1 45 5-49 46-90 (159)
244 3i4p_A Transcriptional regulat 21.8 21 0.00071 25.4 0.2 29 6-34 20-48 (162)
245 2cyy_A Putative HTH-type trans 21.6 16 0.00054 25.5 -0.5 29 7-35 25-53 (151)
246 2qc0_A Uncharacterized protein 21.3 53 0.0018 26.8 2.6 49 11-59 319-367 (373)
247 2wv0_A YVOA, HTH-type transcri 20.5 39 0.0014 25.6 1.6 32 9-40 40-71 (243)
248 1uly_A Hypothetical protein PH 20.5 35 0.0012 25.2 1.2 29 8-36 38-66 (192)
249 3m8e_A Putative DNA-binding pr 20.3 2E+02 0.007 19.3 4.9 47 8-54 65-112 (124)
250 2e1c_A Putative HTH-type trans 20.1 24 0.00081 25.5 0.2 29 7-35 45-73 (171)
No 1
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.94 E-value=2.2e-28 Score=214.03 Aligned_cols=135 Identities=24% Similarity=0.323 Sum_probs=1.0
Q ss_pred cccccccCCChHHHHHHHHhhccCC-ceEEeeEeeeEEEcCHhHHHHHHcCChHHHHHhhcccCCCCChHHHhcCCCchh
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFV-GLPAQDIKRETRVLTDEGKKYAAEGSSEIQLFLAVPAECSILKDELQKKPDSAL 85 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kg-lI~~e~~~~~~~~LTeEG~~yl~~GsPE~rl~~~l~~~g~~~~~eL~~~lg~~~ 85 (150)
..-|...|++|++|+++++||+++| ||++++.+.+.|+||+||++|+++||||+|||++++.+| ++++||.+ + +.
T Consensus 24 ~~~a~~~~~~~~~v~~~~~~L~~~~~~v~~~~~~~~~~~Lt~eg~~~~~~G~pE~~~~~~~~~~~-~~~~~l~~-~--~~ 99 (508)
T 3l4g_A 24 AELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGSHEARVFRSIPPEG-LAQSELMR-L--PS 99 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCeEEEEEEEEEEEEECHHHHHHHHcCCHHHHHHHHhhhcC-ccHHHHhc-C--cc
Confidence 3345568999999999999999998 999999999999999999999999999999999998766 89999987 3 46
Q ss_pred hhhHhhhhhc-------c----------------hHHHHHHHHHhcCCC--CCHhhHHhHhhhcCceeeEEEEEEEEecC
Q 031936 86 FEIGCSQSVE-------T----------------NKFKDLLVRVQDGRA--ISKEDINGGLKARKLIVNQMCKGYSVSNA 140 (150)
Q Consensus 86 ~kIg~g~a~K-------~----------------d~~~~~L~~i~~g~~--~~~~~l~~~LKKRkLi~~~~~~~~~V~kg 140 (150)
++||+|||+| . |.++..|..|..++. ++++.+ ++|||||||+.++.++|.|+||
T Consensus 100 ~~i~~~~~~k~~wi~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~-~~lkkRklv~~~~~~~~~v~~g 178 (508)
T 3l4g_A 100 GKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKER-SELRKRKLLAEVTLKTYWVSKG 178 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHCCCEEecCCCcCcceEeeccCccchHHHHHHHHHHcCCCCCCCHHHH-HHHHhcCCeEEEEEEEEEEecc
Confidence 8999999999 1 334567888876653 567889 9999999999999999999999
Q ss_pred CCchhh
Q 031936 141 LKKEES 146 (150)
Q Consensus 141 ~~f~~~ 146 (150)
++|++.
T Consensus 179 ~~~~~~ 184 (508)
T 3l4g_A 179 SAFSTS 184 (508)
T ss_dssp ----CC
T ss_pred hhhhhh
Confidence 999754
No 2
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=96.79 E-value=0.00055 Score=48.43 Aligned_cols=57 Identities=4% Similarity=-0.061 Sum_probs=46.1
Q ss_pred CcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChHHHHHhh
Q 031936 6 SSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEIQLFLA 65 (150)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE~rl~~~ 65 (150)
.+.-|..+++++..|.+.++.|+.+|+|.... ..|.||+.|+.++..-.+..+++..
T Consensus 34 ~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~---~~~~Lt~~g~~~~~~~~~~~~~~~~ 90 (139)
T 2x4h_A 34 INRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE---DGVWITNNGTRSINYLIKAHRVIEI 90 (139)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---TEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCEEecC---CeEEEChhHHHHHHHHHHHHHHHHH
Confidence 34445668999999999999999999999876 6799999999988776665555533
No 3
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.79 E-value=0.0019 Score=43.30 Aligned_cols=52 Identities=23% Similarity=0.102 Sum_probs=40.1
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHHHHcCChH
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~yl~~GsPE 59 (150)
.-+..+++++..|.+.++.|+.+|||..... -...+.||++|+.+++.-.+.
T Consensus 35 eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~~~ 87 (95)
T 2qvo_A 35 YIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIKSI 87 (95)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHHHH
Confidence 3456689999999999999999999943222 245789999999998654443
No 4
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=96.78 E-value=0.0018 Score=45.03 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=43.7
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcCChHHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
-+..+++++..|.+.++.|+.+|+|.... .....+.||++|+.++....+..+
T Consensus 58 la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 114 (140)
T 2nnn_A 58 LGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGLAAAR 114 (140)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHHHHHHH
Confidence 35568999999999999999999999853 445678999999999987666543
No 5
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.77 E-value=0.0026 Score=42.54 Aligned_cols=51 Identities=14% Similarity=0.018 Sum_probs=41.7
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHHHHcCChHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
|..++++...|.+.++.|+.+|||..... ....+.||++|+++++.-.+.+
T Consensus 33 a~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~~~~ 84 (99)
T 1tbx_A 33 NAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLKTAI 84 (99)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHHHHH
Confidence 56689999999999999999999987544 3557899999999986654433
No 6
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=96.65 E-value=0.0041 Score=42.96 Aligned_cols=51 Identities=20% Similarity=0.181 Sum_probs=42.6
Q ss_pred cCCChHHHHHHHHhhccCCceEEeeE-----eeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQDI-----KRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~~-----~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
.++++..|...++.|+..|+|+.... ....|.||+.|++.+..=.++.+-+
T Consensus 36 ~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~~~~ 91 (108)
T 3l7w_A 36 ASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEWSVY 91 (108)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred hCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999998753 3567999999999987766665544
No 7
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=96.59 E-value=0.0036 Score=44.00 Aligned_cols=51 Identities=10% Similarity=-0.022 Sum_probs=43.1
Q ss_pred cCCChHHHHHHHHhhccCCceEEee------EeeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQD------IKRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~------~~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
.++++..|...++.|+..|+|+... .....|.||+.|++++..-.++.+-+
T Consensus 43 ~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~~~~ 99 (116)
T 3f8b_A 43 MELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFESWSRV 99 (116)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999864 34678999999999998777766544
No 8
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.57 E-value=0.0027 Score=44.18 Aligned_cols=54 Identities=9% Similarity=-0.041 Sum_probs=45.0
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHH-HcCChHHHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYA-AEGSSEIQL 62 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl-~~GsPE~rl 62 (150)
-+..+++++..|.+.++.|+.+|+|..... ....+.||++|++++ ..-.+...-
T Consensus 51 la~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~~ 109 (142)
T 3bdd_A 51 LQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQA 109 (142)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTSCCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHHH
Confidence 355679999999999999999999998753 356789999999999 888776543
No 9
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=96.46 E-value=0.0055 Score=43.19 Aligned_cols=49 Identities=12% Similarity=-0.013 Sum_probs=40.6
Q ss_pred cCCChHHHHHHHHhhccCCceEEeeE------eeeEEEcCHhHHHHHHcCChHHH
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQDI------KRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~~------~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
.++++..|...++.|+.+|+|+.... .+..|.||+.|++++..=..+..
T Consensus 42 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~~~~ 96 (116)
T 3hhh_A 42 TEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQRWT 96 (116)
T ss_dssp SSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHHHH
Confidence 36789999999999999999998653 46789999999999976555443
No 10
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=96.45 E-value=0.0035 Score=44.15 Aligned_cols=53 Identities=15% Similarity=0.017 Sum_probs=42.1
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcCChHHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEGSSEIQL 62 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~GsPE~rl 62 (150)
|..+++++..|.+.++.|+.+|+|+... .-...+.||++|+++++.-.|...-
T Consensus 57 a~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~ 113 (140)
T 3hsr_A 57 GERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVK 113 (140)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHHHHHHH
T ss_pred HHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHHHHHHH
Confidence 4557999999999999999999999874 3455789999999999876654443
No 11
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=96.43 E-value=0.0039 Score=43.64 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=44.8
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
+..+++++..|.+.++.|+.+|+|..... ....+.||++|+.++..-.+...-+
T Consensus 58 a~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~ 115 (142)
T 2bv6_A 58 VTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKV 115 (142)
T ss_dssp HHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHTTHHHHH
T ss_pred HHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999998653 3457899999999998887765544
No 12
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.39 E-value=0.0024 Score=43.59 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=37.6
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHH
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAA 54 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~ 54 (150)
.-+...|+++..+...+..|+.+|+|..... .|.||++|+++++
T Consensus 25 ~La~~~~ls~~~~~~~l~~L~~~GLI~~~~~---~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 25 RIMYGANLSYALTGRYIKMLMDLEIIRQEGK---QYMLTKKGEELLE 68 (95)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEETT---EEEECHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHCCCeEEECC---eeEEChhHHHHHH
Confidence 3456679999999999999999999998743 4999999998763
No 13
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=96.35 E-value=0.0038 Score=43.88 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=42.3
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
+..+++++..|.+.++.|+.+|+|.-... -...+.||++|++++..-.+...
T Consensus 58 a~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 113 (143)
T 3oop_A 58 ALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRDIVE 113 (143)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHHHHHH
Confidence 45679999999999999999999987643 34578999999999977666443
No 14
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=96.33 E-value=0.0021 Score=45.71 Aligned_cols=54 Identities=7% Similarity=0.087 Sum_probs=40.0
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeEe----eeEEEcCHhHHHHHHcCChHHH
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDIK----RETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~----~~~~~LTeEG~~yl~~GsPE~r 61 (150)
.-+..+++++..|.+.++.|+.+|||...... ...+.||++|+++++.-.+...
T Consensus 59 eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 116 (150)
T 3fm5_A 59 GVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKARVD 116 (150)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHHHHH
Confidence 34556799999999999999999999875544 3447999999999987666544
No 15
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=96.32 E-value=0.0073 Score=43.10 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=42.3
Q ss_pred cCCChHHHHHHHHhhccCCceEEeeE-----eeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQDI-----KRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~~-----~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
.++++..|...++.|+..|+|+.... .++.|.||+.|++++..=..+.+-+
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~~~~~~ 103 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQWHVL 103 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998753 4678999999999997765554433
No 16
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=96.31 E-value=0.007 Score=42.66 Aligned_cols=48 Identities=8% Similarity=-0.038 Sum_probs=39.8
Q ss_pred cCCChHHHHHHHHhhccCCceEEeeE------eeeEEEcCHhHHHHHHcCChHH
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQDI------KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~~------~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
.++++..|...++.|+..|+|+.... .+..|.||+.|++++..=.-+.
T Consensus 40 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~ 93 (117)
T 4esf_A 40 TEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKKW 93 (117)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 36789999999999999999998753 4778999999999987644443
No 17
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=96.30 E-value=0.0047 Score=43.04 Aligned_cols=53 Identities=11% Similarity=0.002 Sum_probs=43.0
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
-+..+++++..|.+.++.|+.+|+|..... -...+.||++|++++..-.+...
T Consensus 53 la~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 109 (139)
T 3eco_A 53 IAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFD 109 (139)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHHHHHH
Confidence 345679999999999999999999998643 35678999999999976655443
No 18
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=96.29 E-value=0.0093 Score=41.84 Aligned_cols=50 Identities=14% Similarity=0.004 Sum_probs=41.5
Q ss_pred cCCChHHHHHHHHhhccCCceEEeeE------eeeEEEcCHhHHHHHHcCChHHHH
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQDI------KRETRVLTDEGKKYAAEGSSEIQL 62 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~~------~~~~~~LTeEG~~yl~~GsPE~rl 62 (150)
.++++..|...++.|+..|+|+.... .+..|.||+.|++++..=..+..-
T Consensus 38 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~~~ 93 (115)
T 4esb_A 38 TFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQSWGM 93 (115)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 36789999999999999999998653 467899999999999776655443
No 19
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=96.26 E-value=0.0038 Score=43.29 Aligned_cols=51 Identities=10% Similarity=-0.027 Sum_probs=42.2
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcCChHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
+..+++++..|.+.++.|+.+|+|.... .....+.||++|+.++..-.+..
T Consensus 50 a~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 104 (138)
T 3bpv_A 50 ATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLILKVE 104 (138)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHHHHH
Confidence 4567999999999999999999999854 34566899999999988765544
No 20
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.25 E-value=0.0028 Score=44.34 Aligned_cols=52 Identities=13% Similarity=0.003 Sum_probs=42.5
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcCChHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
-+..+++++..|.+.++.|+.+|+|.... .-...+.||++|+.++..-.+..
T Consensus 58 la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 113 (146)
T 2fbh_A 58 LAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEAIA 113 (146)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHHHHH
T ss_pred HHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHHHHH
Confidence 34567999999999999999999999875 34556899999999987765443
No 21
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=96.22 E-value=0.005 Score=44.15 Aligned_cols=52 Identities=17% Similarity=0.065 Sum_probs=42.6
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
|..+++++..|.+.++.|+.+|+|..... -...+.||++|++++..-.+...
T Consensus 71 a~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 126 (159)
T 3s2w_A 71 SDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKKIAS 126 (159)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 55679999999999999999999988643 35578999999999876655443
No 22
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.20 E-value=0.0077 Score=41.81 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=42.2
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcCChHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
-+..+++++..|.+.++.|+.+|+|.... .....+.||++|++++..-.+..
T Consensus 56 la~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 111 (142)
T 2fbi_A 56 LANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDM 111 (142)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 34567999999999999999999998864 34566899999999987655543
No 23
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=96.19 E-value=0.0057 Score=42.96 Aligned_cols=52 Identities=10% Similarity=-0.013 Sum_probs=42.8
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEe----eeEEEcCHhHHHHHHcCChHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIK----RETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~----~~~~~LTeEG~~yl~~GsPE~r 61 (150)
+..+++++..|.+.++.|+.+|+|...... ...+.||++|+.++..-.+...
T Consensus 57 a~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 112 (144)
T 3f3x_A 57 ANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANEVLR 112 (144)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHHHHHH
Confidence 455799999999999999999999986543 4468999999999887666543
No 24
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=96.18 E-value=0.01 Score=43.35 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=40.1
Q ss_pred cCCChHHHHHHHHhhccCCceEEeeE------eeeEEEcCHhHHHHHHcCChHH
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQDI------KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~~------~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
.++++..|...++.|+..|+|+.... ....|.||+.|++.+..-.++.
T Consensus 72 ~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~ 125 (145)
T 1xma_A 72 YVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEEW 125 (145)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHHH
T ss_pred cCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHHHH
Confidence 46899999999999999999988653 4678999999999987654443
No 25
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=96.16 E-value=0.0067 Score=42.43 Aligned_cols=51 Identities=10% Similarity=-0.014 Sum_probs=42.4
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
+..+++++..|.+.++.|+.+|+|..... -...+.||++|+.++....+..
T Consensus 57 a~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~ 111 (146)
T 2gxg_A 57 ANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGIEIY 111 (146)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHHHHH
Confidence 55689999999999999999999987653 3456899999999998766544
No 26
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=96.16 E-value=0.0042 Score=43.79 Aligned_cols=53 Identities=8% Similarity=0.015 Sum_probs=42.2
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcCChHHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
-+..+++++..|.+.++.|+.+|+|.... .....+.||++|++++..-.+...
T Consensus 62 la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 118 (150)
T 2rdp_A 62 LSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIEKRQ 118 (150)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHHHHHH
Confidence 34557999999999999999999999864 335568999999999877666543
No 27
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=96.15 E-value=0.0072 Score=42.41 Aligned_cols=48 Identities=13% Similarity=-0.065 Sum_probs=39.7
Q ss_pred cCCChHHHHHHHHhhccCCceEEeeE-------eeeEEEcCHhHHHHHHcCChHH
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQDI-------KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~~-------~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
.++++..|...++.|+..|+|+.... ..+.|.||+.|++.+..-.-+.
T Consensus 52 ~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~ 106 (115)
T 2dql_A 52 YRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARLW 106 (115)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 46899999999999999999998643 3588999999999987654443
No 28
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.14 E-value=0.0042 Score=43.43 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=42.0
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcCChH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~GsPE 59 (150)
-+..+++++..|.+.++.|+.+|+|+... .....+.||++|+.++..-.+.
T Consensus 53 la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~ 107 (145)
T 2a61_A 53 LSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIER 107 (145)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHHHH
Confidence 35567999999999999999999999864 3456789999999998765554
No 29
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=96.12 E-value=0.0027 Score=44.21 Aligned_cols=52 Identities=10% Similarity=-0.017 Sum_probs=43.3
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
+..+++++..|.+.++.|+.+|+|..... -...+.||++|++++..-.+...
T Consensus 55 a~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 110 (138)
T 1jgs_A 55 KKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVG 110 (138)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHHHHHH
Confidence 45579999999999999999999998643 34568999999999988777653
No 30
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=96.12 E-value=0.0035 Score=43.94 Aligned_cols=53 Identities=21% Similarity=0.052 Sum_probs=43.2
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
-+..+++++..|.+.++.|+.+|+|..... ....+.||++|+.++..-.+...
T Consensus 49 la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 105 (144)
T 1lj9_A 49 IAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQ 105 (144)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHHHHHH
Confidence 345679999999999999999999998653 35568999999999977666543
No 31
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=96.12 E-value=0.0025 Score=44.45 Aligned_cols=52 Identities=10% Similarity=0.053 Sum_probs=42.2
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
-+..+++++..|.+.++.|+.+|+|..... -...+.||++|+.++..-.+..
T Consensus 56 la~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~~~~ 111 (141)
T 3bro_A 56 LESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILSYM 111 (141)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHHHHH
Confidence 355679999999999999999999988653 3457889999999887666543
No 32
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=96.10 E-value=0.005 Score=46.13 Aligned_cols=41 Identities=15% Similarity=-0.095 Sum_probs=34.5
Q ss_pred CChHHHHHHHHhhccCCceEEeeEe-eeEEEcCHhHHHHHHc
Q 031936 15 VDAQLNESVIKKFGLFVGLPAQDIK-RETRVLTDEGKKYAAE 55 (150)
Q Consensus 15 ~~~~~v~~~l~sL~~kglI~~e~~~-~~~~~LTeEG~~yl~~ 55 (150)
++--.|+.++.||.++|||+-.-.= .-.|.||+||.+||.+
T Consensus 37 vpNL~ViKamqSLkSRGyVkEqFaWrhyYw~LTnEGIeYLR~ 78 (162)
T 2xzm_7 37 VPNLHCYILVRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKT 78 (162)
T ss_dssp CBHHHHHHHHHHHHHHTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred cCcHHHHHHHhcccccccccceeeeEEEEEEEchHHHHHHHH
Confidence 5566799999999999999876654 4678999999999965
No 33
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=96.10 E-value=0.0061 Score=43.89 Aligned_cols=52 Identities=21% Similarity=0.070 Sum_probs=42.2
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEe----eeEEEcCHhHHHHHHcCChHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIK----RETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~----~~~~~LTeEG~~yl~~GsPE~r 61 (150)
+..+++++..|.+.++.|+.+|+|..+... ...+.||++|+++++.-.+..+
T Consensus 74 a~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~ 129 (161)
T 3e6m_A 74 ATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLIN 129 (161)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHHHHHH
Confidence 556899999999999999999999986543 4678999999999987666443
No 34
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.09 E-value=0.0049 Score=43.99 Aligned_cols=52 Identities=15% Similarity=0.024 Sum_probs=42.5
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
-+..+++++..|.+.++.|+.+|+|+.... ....+.||++|+.++..-.+..
T Consensus 64 la~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 119 (154)
T 2eth_A 64 IAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILSNF 119 (154)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHHHHH
Confidence 355679999999999999999999998653 3567899999999987755543
No 35
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=96.09 E-value=0.0082 Score=42.57 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=43.2
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
+..+++++..|.+.++.|+.+|+|..... ....+.||++|+.+++.-.+...-+
T Consensus 68 a~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~ 125 (153)
T 2pex_A 68 GERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSKAGAVPEQV 125 (153)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGGSTTHHHHH
T ss_pred HHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999998643 3446899999999998887765544
No 36
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=96.08 E-value=0.0017 Score=43.40 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=42.7
Q ss_pred cccccccCCChHH-HHHHHHhhccCCceEEeeE--eeeEEEcCHhHHHHHHcCChHHHH
Q 031936 7 SASTVSVTVDAQL-NESVIKKFGLFVGLPAQDI--KRETRVLTDEGKKYAAEGSSEIQL 62 (150)
Q Consensus 7 ~~~~~~~~~~~~~-v~~~l~sL~~kglI~~e~~--~~~~~~LTeEG~~yl~~GsPE~rl 62 (150)
+.-+..+++++.. |.+.++.|+.+|+|..... ....+.||++|+++++.=.|..+.
T Consensus 34 ~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~~~~~~~ 92 (95)
T 2pg4_A 34 AEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECLEKCRDV 92 (95)
T ss_dssp HHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHHHHHHHH
Confidence 3345567999999 9999999999999993322 345689999999998765555443
No 37
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=96.03 E-value=0.0069 Score=43.36 Aligned_cols=51 Identities=8% Similarity=-0.032 Sum_probs=41.9
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcCChHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
+..+++++..|.+.++.|+.+|+|.... .....+.||++|+.++..-.+..
T Consensus 73 a~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 127 (162)
T 3cjn_A 73 GIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHM 127 (162)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 4557999999999999999999998864 33467899999999987765544
No 38
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.02 E-value=0.0056 Score=42.48 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=38.4
Q ss_pred cccc-CCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHH
Q 031936 10 TVSV-TVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYA 53 (150)
Q Consensus 10 ~~~~-~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl 53 (150)
+..+ |+++..+.+.++.|+..|+|+-.......|.||+.|+...
T Consensus 49 ~~~l~gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 49 RSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVR 93 (111)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHH
Confidence 4557 8999999999999999999987665678899999999865
No 39
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=96.01 E-value=0.0026 Score=45.04 Aligned_cols=53 Identities=6% Similarity=-0.082 Sum_probs=35.5
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcCChHHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
-+..+++++..|.+.++.|+.+|||.... .-...+.||++|+++++.-.+...
T Consensus 63 La~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~ 119 (148)
T 3jw4_A 63 LAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNIFL 119 (148)
T ss_dssp HHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHHHHHH
Confidence 35568999999999999999999998764 334567899999999977665443
No 40
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.00 E-value=0.0055 Score=44.18 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=43.4
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEe----eeEEEcCHhHHHHHHcCChHHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIK----RETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~----~~~~~LTeEG~~yl~~GsPE~r 61 (150)
-|..+++++..|.+.++.|+.+|||.-.... ...+.||++|+++++.-.+..+
T Consensus 66 La~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 122 (162)
T 3k0l_A 66 LAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQVVQ 122 (162)
T ss_dssp HHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHHHHHH
Confidence 3556799999999999999999999986543 4678999999999987666443
No 41
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.00 E-value=0.0053 Score=40.54 Aligned_cols=49 Identities=14% Similarity=-0.041 Sum_probs=39.9
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcC
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEG 56 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~G 56 (150)
.-+..+|+++..|.+.++.|+..|+|.... .....|.||++|.+.+..-
T Consensus 35 ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~ 87 (100)
T 1ub9_A 35 QIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRF 87 (100)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHH
Confidence 345568999999999999999999998654 3467899999998776543
No 42
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.97 E-value=0.0026 Score=44.91 Aligned_cols=51 Identities=14% Similarity=0.039 Sum_probs=39.6
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE 59 (150)
-+..+++++..|.+.++.|+.+|+|..+.. -...+.||++|+.++..-.+.
T Consensus 60 la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~~ 114 (148)
T 3nrv_A 60 ISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDF 114 (148)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHHHH
Confidence 355689999999999999999999997743 356689999999998765553
No 43
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=95.95 E-value=0.0063 Score=41.95 Aligned_cols=44 Identities=16% Similarity=0.060 Sum_probs=37.7
Q ss_pred cCCChHHHHHHHHhhccCCceEEee-EeeeEEEcCHhHHHHHHcC
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQD-IKRETRVLTDEGKKYAAEG 56 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~-~~~~~~~LTeEG~~yl~~G 56 (150)
..+++..+..+++.|+..|+|+... ...+.|.||++|++++++-
T Consensus 40 ~~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~ 84 (99)
T 2co5_A 40 IDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEEL 84 (99)
T ss_dssp CBCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHH
Confidence 3678999999999999999999875 3467899999999988653
No 44
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=95.93 E-value=0.014 Score=41.13 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHhhccCCceEEeeE------eeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 14 TVDAQLNESVIKKFGLFVGLPAQDI------KRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 14 ~~~~~~v~~~l~sL~~kglI~~e~~------~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
.+++..|...++.|+..|+|+.... ....|.||++|++++..-..+..-+
T Consensus 44 ~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~~~~~~ 99 (117)
T 3elk_A 44 ALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQALQLA 99 (117)
T ss_dssp CCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTSTTHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHHHHHH
Confidence 3677899999999999999998764 5678999999999998876654433
No 45
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=95.93 E-value=0.0038 Score=44.04 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=38.4
Q ss_pred ccccccc--CCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHH
Q 031936 7 SASTVSV--TVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAA 54 (150)
Q Consensus 7 ~~~~~~~--~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~ 54 (150)
+.-|... +++.+.|..-++.|+..|+|+....- .|.||++|.+++.
T Consensus 31 ~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg--~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 31 KELEDRDEIRISKSSVSRRLKKLADHDLLQPLANG--VYVITEEGEAYLN 78 (111)
T ss_dssp HHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTT--CEEECHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCc--eEEECchHHHHHH
Confidence 3345566 89999999999999999999986433 8999999988874
No 46
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=95.93 E-value=0.0027 Score=48.96 Aligned_cols=58 Identities=17% Similarity=0.059 Sum_probs=47.7
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChHHHHHhhc
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEIQLFLAV 66 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE~rl~~~l 66 (150)
+.-|..+++++..|.++++.|+.+|||+.+.. ..+.||++|++.+..=.+-.+++..+
T Consensus 24 ~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~--~~i~LT~~G~~~~~~~~~~h~~~e~~ 81 (214)
T 3hrs_A 24 KEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK--AGYLLTDLGLKLVSDLYRKHRLIEVF 81 (214)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT--TEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCEEEecC--CCeEECHHHHHHHHHHHHHHHHHHHH
Confidence 34456689999999999999999999988764 57899999999988777767766443
No 47
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=95.92 E-value=0.006 Score=45.52 Aligned_cols=55 Identities=13% Similarity=-0.056 Sum_probs=44.7
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEEeeEe----eeEEEcCHhHHHHHHcCChHHH
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPAQDIK----RETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~----~~~~~LTeEG~~yl~~GsPE~r 61 (150)
+.-|..+++++..|.+.++.|+.+|||...... ...+.||++|+.++..-.+...
T Consensus 61 ~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 119 (189)
T 3nqo_A 61 NNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRTGI 119 (189)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 334556799999999999999999999986543 3678999999999987766544
No 48
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=95.92 E-value=0.0051 Score=44.17 Aligned_cols=52 Identities=8% Similarity=0.087 Sum_probs=42.2
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEe----eeEEEcCHhHHHHHHcCChHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIK----RETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~----~~~~~LTeEG~~yl~~GsPE~ 60 (150)
-+..+++++..+.+.++.|+.+|||.-.... ...+.||++|+++++.-.|..
T Consensus 57 La~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 112 (147)
T 4b8x_A 57 IGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAATRDL 112 (147)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHHHHHH
Confidence 3556799999999999999999999986654 356899999999987654433
No 49
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=95.91 E-value=0.0043 Score=42.85 Aligned_cols=53 Identities=8% Similarity=-0.001 Sum_probs=43.3
Q ss_pred cCccccc-ccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChHH
Q 031936 5 SSSASTV-SVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 5 ~~~~~~~-~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
+.+.-+. ..++|...|-+.++.|+.+|||. .. .. -+.||++|+..++.+.|-+
T Consensus 32 t~~~Lae~~l~~drstvsrnl~~L~r~GlVe-~~-~~-Dl~LT~~G~~~l~~a~~~W 85 (95)
T 1bja_A 32 TAAEVREVHPDLGNAVVNSNIGVLIKKGLVE-KS-GD-GLIITGEAQDIISNAATLY 85 (95)
T ss_dssp CHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE-EE-TT-EEEECHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHCCCee-cC-CC-CeeeCHhHHHHHHHHHHHH
Confidence 3344456 78999999999999999999999 22 22 2999999999999998876
No 50
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.91 E-value=0.0071 Score=41.86 Aligned_cols=51 Identities=8% Similarity=0.005 Sum_probs=41.8
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
+..+++++..|.+.++.|+.+|+|..... ....+.||++|+.++..-.+..
T Consensus 54 a~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~ 108 (139)
T 3bja_A 54 IENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVDVQY 108 (139)
T ss_dssp HHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHHHHH
Confidence 45679999999999999999999988643 3456899999999997765544
No 51
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.89 E-value=0.0032 Score=44.77 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=40.1
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEee------EeeeEEEcCHhHHHHHHcCChHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQD------IKRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~------~~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
+..+++++..|.+.++.|+.+|+|..+. .-...+.||++|+.++..-.+...
T Consensus 58 a~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~~~~~ 115 (151)
T 3kp7_A 58 TEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAIMS 115 (151)
T ss_dssp HHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHHHHHH
Confidence 5567999999999999999999999743 445567999999999877666543
No 52
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=95.88 E-value=0.0071 Score=44.13 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=40.6
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
-+..+++++..|.+.++.|+.+|||..+.. -...+.||++|++++..-.+..
T Consensus 74 La~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 129 (166)
T 3deu_A 74 LAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEEVI 129 (166)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHHHHH
T ss_pred HHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 345579999999999999999999998643 3467899999999987655543
No 53
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.85 E-value=0.0048 Score=43.32 Aligned_cols=52 Identities=8% Similarity=0.051 Sum_probs=41.6
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
-+..+++++..|.+.++.|+.+|+|..... ....+.||++|+.++..-.+..
T Consensus 56 la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 111 (147)
T 2hr3_A 56 LAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNRAKR 111 (147)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHHHHH
Confidence 345679999999999999999999988643 3456899999999987766544
No 54
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=95.80 E-value=0.0069 Score=43.79 Aligned_cols=52 Identities=6% Similarity=0.008 Sum_probs=42.8
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEe----eeEEEcCHhHHHHHHcCChHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIK----RETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~----~~~~~LTeEG~~yl~~GsPE~r 61 (150)
|..+++++..|.+.++.|+.+|||.-.... ...+.||++|+++++.-.|...
T Consensus 53 a~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 108 (151)
T 4aik_A 53 AKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVDGVIS 108 (151)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHHHHHH
Confidence 456899999999999999999999876543 4578999999999876665443
No 55
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.76 E-value=0.0036 Score=44.44 Aligned_cols=51 Identities=8% Similarity=0.042 Sum_probs=41.2
Q ss_pred cccccCCChHHHHHHHHhhccCCceEE--ee----EeeeEEEcCHhHHHHHHcCChH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPA--QD----IKRETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~--e~----~~~~~~~LTeEG~~yl~~GsPE 59 (150)
-+..+++++..|.+.++.|+.+|+|.. .. .....+.||++|+.++..-.+.
T Consensus 61 La~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~ 117 (154)
T 2qww_A 61 LTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTAN 117 (154)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSC
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhh
Confidence 345578999999999999999999998 33 3345789999999998776655
No 56
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.76 E-value=0.0086 Score=41.32 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=38.3
Q ss_pred cccc-CCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHH
Q 031936 10 TVSV-TVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAA 54 (150)
Q Consensus 10 ~~~~-~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~ 54 (150)
+..+ ++++..|.+.++.|+.+|+|.-... ....|.||++|++.+.
T Consensus 42 a~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~ 91 (112)
T 1z7u_A 42 MRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYD 91 (112)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHH
Confidence 4557 9999999999999999999998764 3567999999998763
No 57
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.75 E-value=0.0022 Score=45.21 Aligned_cols=52 Identities=23% Similarity=0.135 Sum_probs=42.5
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
+..+++++..+.+.++.|+.+|+|..... -...+.||++|+++++.-.+..+
T Consensus 52 a~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 107 (145)
T 3g3z_A 52 GEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTESAQ 107 (145)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHHHHHH
Confidence 55679999999999999999999997543 34578999999999876665544
No 58
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.73 E-value=0.0073 Score=42.61 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=42.0
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
+..+++++..|.+.++.|+.+|+|..... -...+.||++|++++..-.+..
T Consensus 61 a~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 115 (152)
T 3bj6_A 61 GAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIRADE 115 (152)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHHHHH
Confidence 45579999999999999999999998643 3457899999999987765544
No 59
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=95.71 E-value=0.0095 Score=41.65 Aligned_cols=45 Identities=18% Similarity=0.015 Sum_probs=37.7
Q ss_pred CCh-HHHHHHHHhhccCCceEEeeE-----eeeEEEcCHhHHHHHHcCChH
Q 031936 15 VDA-QLNESVIKKFGLFVGLPAQDI-----KRETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 15 ~~~-~~v~~~l~sL~~kglI~~e~~-----~~~~~~LTeEG~~yl~~GsPE 59 (150)
+++ ..|...++.|+..|+|+.... ....|.||+.|++.+..-..+
T Consensus 46 is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~ 96 (118)
T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRS 96 (118)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHH
Confidence 677 899999999999999998753 467899999999988764443
No 60
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.69 E-value=0.012 Score=41.65 Aligned_cols=51 Identities=14% Similarity=-0.022 Sum_probs=41.9
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEe----eeEEEcCHhHHHHHHcCChHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIK----RETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~----~~~~~LTeEG~~yl~~GsPE~ 60 (150)
+..+++++..|.+.++.|+.+|+|...... ...+.||++|+.++..-.+..
T Consensus 58 a~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 112 (155)
T 1s3j_A 58 AERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLAGR 112 (155)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHHHHH
Confidence 456799999999999999999999886543 456899999999987765543
No 61
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=95.66 E-value=0.0087 Score=42.01 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=34.8
Q ss_pred cCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHHHHc
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKYAAE 55 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~yl~~ 55 (150)
++++---|+.++.||.++|+|+-.-. ..-.|.||+||-+|+.+
T Consensus 35 l~vpNL~Vik~mqSLkSrGyVkeqFaWrh~Yw~LTnEGieyLR~ 78 (105)
T 3u5c_K 35 IDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLRE 78 (105)
T ss_dssp SSSCHHHHHHHHHHHHHTSSEEEECTTTCCEEEECHHHHHHHHH
T ss_pred cCccchhHHHHHhcccccceeccEecceEEEEEEchhhHHHHHH
Confidence 34666689999999999999886544 34567999999999964
No 62
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=95.65 E-value=0.0087 Score=41.97 Aligned_cols=54 Identities=9% Similarity=0.044 Sum_probs=44.7
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
+..+++++..|.+.++.|+.+|+|..... ....+.||++|+.++..-.+...-+
T Consensus 61 a~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~~~~~~~~ 118 (147)
T 1z91_A 61 GEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKAVDIPGTI 118 (147)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGTTTHHHHH
T ss_pred HHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHHHHHHHHH
Confidence 55689999999999999999999988643 3456899999999998887765443
No 63
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=95.65 E-value=0.0073 Score=46.90 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=37.6
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHH
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAA 54 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~ 54 (150)
.-|..+++.+..|...++.|+.+|||++++ .-..||++|+++++
T Consensus 35 ~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~---~Gv~LTe~G~~~A~ 78 (200)
T 2p8t_A 35 QISERLELGEGSVRTLLRKLSHLDIIRSKQ---RGHFLTLKGKEIRD 78 (200)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEC-----CEEECHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCEEEeC---CCeEECHHHHHHHH
Confidence 346678999999999999999999999988 68999999999873
No 64
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=95.57 E-value=0.0048 Score=44.16 Aligned_cols=53 Identities=8% Similarity=0.032 Sum_probs=40.5
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
-+..+++++..|.+.++.|+.+|+|..... -...+.||++|+.++..-.+...
T Consensus 69 la~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 125 (162)
T 2fa5_A 69 VSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAPLVN 125 (162)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 345679999999999999999999987542 23568899999999977665543
No 65
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=95.56 E-value=0.0048 Score=43.31 Aligned_cols=49 Identities=18% Similarity=0.024 Sum_probs=38.2
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcCC
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEGS 57 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~Gs 57 (150)
-|..+++++..|.+.++.|+.+|+|.... .-...+.||++|+.++....
T Consensus 57 La~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 57 LARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 34567999999999999999999998864 44567899999999987775
No 66
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=95.54 E-value=0.014 Score=42.18 Aligned_cols=51 Identities=14% Similarity=-0.027 Sum_probs=38.9
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcCChH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~GsPE 59 (150)
-+..+++++..|.+.++.|+.+|||.-.. .-...+.||++|+++++.-.+.
T Consensus 68 La~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 122 (168)
T 3u2r_A 68 IADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEEP 122 (168)
T ss_dssp HHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHHHH
Confidence 34567999999999999999999999865 3445789999999998765553
No 67
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=95.51 E-value=0.004 Score=43.77 Aligned_cols=51 Identities=16% Similarity=0.012 Sum_probs=35.9
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEe----eeEEEcCHhHHHHHHcCChHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIK----RETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~----~~~~~LTeEG~~yl~~GsPE~ 60 (150)
+..+++++..|.+.++.|+.+|+|...... ...+.||++|+.++..-.+..
T Consensus 58 a~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~ 112 (142)
T 3ech_A 58 GRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAELIM 112 (142)
T ss_dssp HHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHHHHH
Confidence 556799999999999999999999976543 345789999999987765543
No 68
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=95.36 E-value=0.0071 Score=46.85 Aligned_cols=54 Identities=7% Similarity=-0.029 Sum_probs=44.6
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
.-|..+++++..|.+.++.|+.+|||..+.. ..+.||++|++.+..=.+-.+++
T Consensus 29 ~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~--~~v~LT~~G~~~~~~~~~~~~~~ 82 (226)
T 2qq9_A 29 RIAERLEQSGPTVSQTVARMERDGLVVVASD--RSLQMTPTGRTLATAVMRKHRLA 82 (226)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEECTT--SBEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC--CCeEECHHHHHHHHHHHHHHHHH
Confidence 4456689999999999999999999998754 67999999999887666555555
No 69
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.35 E-value=0.0069 Score=43.06 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=41.2
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
-+..+++++..|.+.++.|+.+|+|..... -...+.||++|+.++..-.+..
T Consensus 63 la~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 118 (155)
T 3cdh_A 63 LAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVASA 118 (155)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHHHHH
Confidence 345679999999999999999999987543 2356899999999987765543
No 70
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.34 E-value=0.015 Score=39.79 Aligned_cols=44 Identities=5% Similarity=0.030 Sum_probs=37.3
Q ss_pred cccc-CCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHH
Q 031936 10 TVSV-TVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYA 53 (150)
Q Consensus 10 ~~~~-~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl 53 (150)
+..+ |+++..+.+.++.|+..|+|+-... ....|.||+.|+++.
T Consensus 34 a~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 34 KRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 3456 9999999999999999999997654 357899999998765
No 71
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.31 E-value=0.0063 Score=43.24 Aligned_cols=50 Identities=10% Similarity=0.073 Sum_probs=38.5
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcCChH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~GsPE 59 (150)
+..+++++..|.+.++.|+.+|||.... .-...+.||++|++++..-.+.
T Consensus 62 a~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~ 115 (149)
T 4hbl_A 62 GRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEA 115 (149)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHHHH
Confidence 4557999999999999999999999764 3445789999999998654443
No 72
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=95.21 E-value=0.018 Score=42.96 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=34.8
Q ss_pred cCCChHHHHHHHHhhccCCceEEeeE------eeeEEEcCHhHHHHHHc
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQDI------KRETRVLTDEGKKYAAE 55 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~~------~~~~~~LTeEG~~yl~~ 55 (150)
.++++..|...++.|+..|+|+.... .+..|.||+.|++.+.+
T Consensus 33 ~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~ 81 (179)
T 1yg2_A 33 WKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGE 81 (179)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHH
T ss_pred cCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHH
Confidence 47899999999999999999997543 46789999999997753
No 73
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.20 E-value=0.023 Score=38.75 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=36.4
Q ss_pred cccc-CCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHH
Q 031936 10 TVSV-TVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYA 53 (150)
Q Consensus 10 ~~~~-~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl 53 (150)
+..+ |+++..+.+.++.|+..|+|.-... ....|.||+.|+...
T Consensus 45 ~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 45 KRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTH
T ss_pred HHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHH
Confidence 3456 5999999999999999999997654 247899999998754
No 74
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.11 E-value=0.012 Score=41.89 Aligned_cols=51 Identities=12% Similarity=-0.016 Sum_probs=39.9
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
+..+++++..|.+.++.|+.+|+|..... -...+.||++|+.++..-.+..
T Consensus 69 a~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 123 (160)
T 3boq_A 69 SGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQASEAH 123 (160)
T ss_dssp HHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHHHHH
T ss_pred HHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHHHHH
Confidence 45579999999999999999999987543 3455889999999997755544
No 75
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.10 E-value=0.0088 Score=42.27 Aligned_cols=55 Identities=20% Similarity=0.136 Sum_probs=42.8
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
+.-|..+++++..|.+.++.|+.+|+|..... ..+.||+.|...+..-.+-.+++
T Consensus 26 ~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~--~~~~LT~~g~~~~~~~~~~~~~~ 80 (142)
T 1on2_A 26 SDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY--RGLVLTSKGKKIGKRLVYRHELL 80 (142)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT--TEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC--ceEEEchhHHHHHHHHHHHHHHH
Confidence 33456689999999999999999999987643 57999999999886544433333
No 76
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=95.04 E-value=0.0096 Score=39.64 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=37.3
Q ss_pred ccccCCChH-HHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHH
Q 031936 10 TVSVTVDAQ-LNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYA 53 (150)
Q Consensus 10 ~~~~~~~~~-~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl 53 (150)
|..+|++.. +|-+.+..|+..|+|.....-.-.|.||+.|.+.+
T Consensus 32 A~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~LT~~g~~~~ 76 (79)
T 1xmk_A 32 AKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWHLTDKKRERM 76 (79)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHHHTTT
T ss_pred HHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeEeCHhHHhHh
Confidence 456899999 99999999999999987655556999999998643
No 77
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.01 E-value=0.03 Score=39.94 Aligned_cols=44 Identities=11% Similarity=0.007 Sum_probs=37.2
Q ss_pred cccc-CCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHH
Q 031936 10 TVSV-TVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYA 53 (150)
Q Consensus 10 ~~~~-~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl 53 (150)
+..+ |+++..+.+.++.|+..|+|.-... ....|.||+.|++.+
T Consensus 55 a~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 55 RRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHH
Confidence 3456 7999999999999999999997664 456899999998865
No 78
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=94.95 E-value=0.013 Score=36.91 Aligned_cols=27 Identities=7% Similarity=-0.054 Sum_probs=24.6
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEe
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQ 36 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e 36 (150)
|...|++.++|+.++++|++||+|.++
T Consensus 32 a~kygV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 32 SKVYGVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCeecc
Confidence 456799999999999999999999986
No 79
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=94.92 E-value=0.008 Score=42.06 Aligned_cols=50 Identities=6% Similarity=-0.083 Sum_probs=40.5
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcCChH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~GsPE 59 (150)
+..+++++..|.+.++.|+.+|||..+. .-...+.||++|+++++.-.+.
T Consensus 60 a~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 113 (127)
T 2frh_A 60 INHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSR 113 (127)
T ss_dssp HHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 4567999999999999999999998743 3355678999999998755443
No 80
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=94.92 E-value=0.0067 Score=43.71 Aligned_cols=54 Identities=7% Similarity=-0.055 Sum_probs=39.1
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeE---eeeEEEcCHhHHHHHHcCChHHH
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDI---KRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~---~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
.-+..+++++..+.+.++.|+.+|+|..... -...+.||++|++.++.-.|..+
T Consensus 57 eLa~~l~~~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~~~~~~ 113 (148)
T 4fx0_A 57 ELAARIGVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQKAVPLWR 113 (148)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 3355679999999999999999999965332 23467999999999987766543
No 81
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=94.85 E-value=0.02 Score=41.53 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=41.6
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
+..++++...|.+.++.|+.+|||..... ....+.||++|+.+++.-.+..
T Consensus 66 a~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~ 120 (168)
T 2nyx_A 66 ATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTEHR 120 (168)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 45679999999999999999999988543 3456899999999987755543
No 82
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=94.78 E-value=0.019 Score=41.71 Aligned_cols=45 Identities=7% Similarity=-0.081 Sum_probs=38.1
Q ss_pred cCCChHHHHHHHHhhccCCceEEeeE-------eeeEEEcCHhHHHHHHcCC
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQDI-------KRETRVLTDEGKKYAAEGS 57 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~~-------~~~~~~LTeEG~~yl~~Gs 57 (150)
.++++..|...++.|+..|+|+.... .++.|.||+.|++++..-.
T Consensus 64 ~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~ 115 (138)
T 2e1n_A 64 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLA 115 (138)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHH
Confidence 46789999999999999999998643 4678999999999986643
No 83
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=94.65 E-value=0.031 Score=43.18 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=36.1
Q ss_pred cCCChHHHHHHHHhhccCCceEEeeE------eeeEEEcCHhHHHHHH
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQDI------KRETRVLTDEGKKYAA 54 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~~------~~~~~~LTeEG~~yl~ 54 (150)
.++++..|...++.|+..|+|+.... .++.|.||++|++.+.
T Consensus 67 ~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~ 114 (204)
T 3l9f_A 67 YDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELA 114 (204)
T ss_dssp EECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHH
T ss_pred cCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHH
Confidence 35788899999999999999998754 3679999999999873
No 84
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=94.51 E-value=0.051 Score=39.06 Aligned_cols=45 Identities=9% Similarity=-0.053 Sum_probs=38.0
Q ss_pred cccCCChHHHHHHHHhhccCCceEEeeEe---e-----eEEEcCHhHHH--HHHc
Q 031936 11 VSVTVDAQLNESVIKKFGLFVGLPAQDIK---R-----ETRVLTDEGKK--YAAE 55 (150)
Q Consensus 11 ~~~~~~~~~v~~~l~sL~~kglI~~e~~~---~-----~~~~LTeEG~~--yl~~ 55 (150)
.-..+++..|..++..|+.+|+|+.+... . ..|.||+.|+. |+++
T Consensus 48 ~~~~is~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~~~~~~~ 102 (122)
T 1bm9_A 48 IGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQ 102 (122)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHHHHHHHH
T ss_pred CcccCCcccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhhHHHHHH
Confidence 34577899999999999999999988772 2 78999999999 7754
No 85
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=94.45 E-value=0.017 Score=44.65 Aligned_cols=53 Identities=11% Similarity=0.006 Sum_probs=43.3
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
-|..+++++..|.+.++.|+.+|||..... ..+.||+.|++.+..=.+-.+++
T Consensus 30 La~~l~vs~~tvs~~l~~Le~~GlV~r~~~--~~v~LT~~G~~~~~~~~~~~~~~ 82 (230)
T 1fx7_A 30 IAERLDQSGPTVSQTVSRMERDGLLRVAGD--RHLELTEKGRALAIAVMRKHRLA 82 (230)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEECTT--SCEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEeCC--ccEEECHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999998765 47899999999987655544443
No 86
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=94.37 E-value=0.048 Score=37.33 Aligned_cols=44 Identities=7% Similarity=-0.027 Sum_probs=35.0
Q ss_pred CChHHHHHHHHhhccCCceEEeeEee--eEEEcCHhHHHHHHcCCh
Q 031936 15 VDAQLNESVIKKFGLFVGLPAQDIKR--ETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 15 ~~~~~v~~~l~sL~~kglI~~e~~~~--~~~~LTeEG~~yl~~GsP 58 (150)
+++..|.+.++.|+.+|+|....... ..+.||++|+.+...-.+
T Consensus 40 ~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~~~ 85 (123)
T 1okr_A 40 WSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKN 85 (123)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHHHH
T ss_pred CcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHHHH
Confidence 77999999999999999999876432 235799999988754433
No 87
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=94.08 E-value=0.044 Score=39.45 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=36.6
Q ss_pred ccc-CCChHHHHHHHHhhccCCceEEeeEe----eeEEEcCHhHHHHH
Q 031936 11 VSV-TVDAQLNESVIKKFGLFVGLPAQDIK----RETRVLTDEGKKYA 53 (150)
Q Consensus 11 ~~~-~~~~~~v~~~l~sL~~kglI~~e~~~----~~~~~LTeEG~~yl 53 (150)
..+ |++...+.+.++.|+..|+|+-.... ...|.||+.|+...
T Consensus 47 ~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 47 RICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp HHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHH
Confidence 345 89999999999999999999876543 57899999998754
No 88
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=93.98 E-value=0.036 Score=40.10 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=36.9
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEe---eeEEEcCHhHHHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIK---RETRVLTDEGKKYA 53 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~---~~~~~LTeEG~~yl 53 (150)
+..+|+++..+-+.++.|+..|+|+-.... ...|.||+.|+...
T Consensus 44 a~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 44 QKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF 90 (146)
T ss_dssp HHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHH
Confidence 345699999999999999999999876532 47899999998754
No 89
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=93.89 E-value=0.045 Score=42.08 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=44.9
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHHHHcCChHHH
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
+.+..|..+++++..|-+.++.|+..|++.-... -...+.||++|+.+++.-.+-.+
T Consensus 29 s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~~~~~~ 86 (230)
T 3cta_A 29 TSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFADLS 86 (230)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHHHHHHH
Confidence 3556677899999999999999999999876422 15678999999999866554443
No 90
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.75 E-value=0.049 Score=41.36 Aligned_cols=50 Identities=14% Similarity=-0.094 Sum_probs=39.7
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCCh
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsP 58 (150)
-+..+++++..|.+.++.|+.+|||.-... -...+.||++|+.+++.-.+
T Consensus 68 La~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (207)
T 2fxa_A 68 IAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLE 121 (207)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHH
Confidence 355679999999999999999999988653 34578999999998865433
No 91
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=93.37 E-value=0.069 Score=36.68 Aligned_cols=48 Identities=17% Similarity=0.046 Sum_probs=38.8
Q ss_pred cccCCChHHHHHHHHhhccCCceEEeeEe--eeEEEcCHhHHHHHHcCCh
Q 031936 11 VSVTVDAQLNESVIKKFGLFVGLPAQDIK--RETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 11 ~~~~~~~~~v~~~l~sL~~kglI~~e~~~--~~~~~LTeEG~~yl~~GsP 58 (150)
...+++...+-+.+..|+..|||...... .....||++|+..++.-.|
T Consensus 44 ~~l~l~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l~~~~p 93 (96)
T 2obp_A 44 KRAQLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAAQLFP 93 (96)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHHHHCC
T ss_pred HHhCCchhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHHHHhcC
Confidence 34688999999999999999999984431 2346999999998877665
No 92
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=93.37 E-value=0.058 Score=35.47 Aligned_cols=49 Identities=10% Similarity=-0.058 Sum_probs=39.8
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEe---eeEEEcCHhHHHHHHcCCh
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIK---RETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~---~~~~~LTeEG~~yl~~GsP 58 (150)
+..+|+++..|.+.++.|+.+|+|...... ...+.+|+.|+.++..=.+
T Consensus 41 a~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~~~ 92 (109)
T 1sfx_A 41 ARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKS 92 (109)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHHHH
Confidence 456799999999999999999999886542 5567899999988765444
No 93
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=93.34 E-value=0.014 Score=43.05 Aligned_cols=45 Identities=7% Similarity=-0.083 Sum_probs=37.4
Q ss_pred cCCChHHHHHHHHhhccCCceEEee-------EeeeEEEcCHhHHHHHHcCC
Q 031936 13 VTVDAQLNESVIKKFGLFVGLPAQD-------IKRETRVLTDEGKKYAAEGS 57 (150)
Q Consensus 13 ~~~~~~~v~~~l~sL~~kglI~~e~-------~~~~~~~LTeEG~~yl~~Gs 57 (150)
.++++..|...++.|+..|+|+... ..++.|.||++|++++..-.
T Consensus 74 ~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~ 125 (148)
T 2zfw_A 74 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLA 125 (148)
T ss_dssp EECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHH
T ss_pred CCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHH
Confidence 4678899999999999999999864 24678999999998775543
No 94
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.22 E-value=0.038 Score=39.57 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=39.6
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCCh
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsP 58 (150)
.-+..+++++..|.++++.|+.+|+|..... ..+.||+.|+..+..-.+
T Consensus 59 ~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~--~~~~lT~~g~~~~~~~~~ 107 (155)
T 2h09_A 59 DMAARLGVSQPTVAKMLKRLATMGLIEMIPW--RGVFLTAEGEKLAQESRE 107 (155)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTCEEEETT--TEEEECHHHHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHCCCEEEecC--CceEEChhHHHHHHHHHH
Confidence 3456689999999999999999999876543 578999999988765433
No 95
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=93.02 E-value=0.0083 Score=44.15 Aligned_cols=54 Identities=7% Similarity=0.007 Sum_probs=41.9
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHH
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
+.-+..+++++..|.+.++.|+.+|+|..... -...+.||++|+.++..-.+..
T Consensus 90 ~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~ 147 (181)
T 2fbk_A 90 TELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLLPAH 147 (181)
T ss_dssp HHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 33455689999999999999999999987633 3446899999999997765544
No 96
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=91.97 E-value=0.15 Score=34.29 Aligned_cols=51 Identities=6% Similarity=-0.063 Sum_probs=40.1
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHHHHcCChH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~yl~~GsPE 59 (150)
-+..+|+++..|.+.++.|+..|+|..... ....|.||++|...+..-.+.
T Consensus 40 la~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~~~ 91 (114)
T 2oqg_A 40 LATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTLER 91 (114)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHHHH
Confidence 345679999999999999999999987644 356799999998766443333
No 97
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=91.80 E-value=0.042 Score=36.51 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=34.3
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKK 51 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~ 51 (150)
-+..+|++...|.+.++.|+..|+|.... ..|.||++|..
T Consensus 49 La~~l~is~~tv~~~L~~L~~~Glv~~~~---g~y~l~~~g~~ 88 (96)
T 1y0u_A 49 IMQTLSLSKKQLDYHLKVLEAGFCIERVG---ERWVVTDAGKI 88 (96)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEET---TEEEECTTTCC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEEC---CEEEECCCchH
Confidence 35567999999999999999999998876 39999999853
No 98
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=91.49 E-value=0.075 Score=41.93 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=39.6
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHc
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAE 55 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~ 55 (150)
+.-|..+|++...+.+.++.|+..|+|.... ....|.||+.|+..++.
T Consensus 170 ~eLA~~lglsksTv~r~L~~Le~~GlV~r~~-r~~~~~LT~~G~~l~~~ 217 (244)
T 2wte_A 170 TELAKMLDKSEKTLINKIAELKKFGILTQKG-KDRKVELNELGLNVIKL 217 (244)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TTTEEEECHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC-CccEEEECHHHHHHHHH
Confidence 3445668999999999999999999999863 35679999999997543
No 99
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=91.24 E-value=0.14 Score=33.39 Aligned_cols=45 Identities=11% Similarity=-0.027 Sum_probs=36.7
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKYAA 54 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~yl~ 54 (150)
+..+|+++..|.+.++.|+..|+|..... ....|.||++|...+.
T Consensus 45 a~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~ 90 (99)
T 3cuo_A 45 TRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAII 90 (99)
T ss_dssp HHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHH
Confidence 45579999999999999999999987643 3567899999976553
No 100
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=91.06 E-value=0.86 Score=30.93 Aligned_cols=37 Identities=8% Similarity=-0.077 Sum_probs=27.3
Q ss_pred CCChHHHHHHHHhhccCCceEEeeEeee-EEE-cCHhHH
Q 031936 14 TVDAQLNESVIKKFGLFVGLPAQDIKRE-TRV-LTDEGK 50 (150)
Q Consensus 14 ~~~~~~v~~~l~sL~~kglI~~e~~~~~-~~~-LTeEG~ 50 (150)
++++..|.+.++.|+.+|+|..+..... .|. ++++|.
T Consensus 39 ~~~~~Tvt~~l~rLe~kGlv~R~~~~r~~~~~~~~~~~~ 77 (126)
T 1sd4_A 39 EVSDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDD 77 (126)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCHHH
T ss_pred CCChhhHHHHHHHHHHCCceEEEeCCCeEEEEEecCHHH
Confidence 4789999999999999999998764333 332 445543
No 101
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=91.01 E-value=0.1 Score=35.05 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=30.9
Q ss_pred HHHhhcccCCCCChHHHhcC--CCchhhhhHhhhhhcchH
Q 031936 61 QLFLAVPAECSILKDELQKK--PDSALFEIGCSQSVETNK 98 (150)
Q Consensus 61 rl~~~l~~~g~~~~~eL~~~--lg~~~~kIg~g~a~K~d~ 98 (150)
+||++|.+.+..++++|.+. +...+...|+||++|+|.
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaREdK 51 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENK 51 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 68889987556899999977 556778899999999663
No 102
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=90.62 E-value=0.085 Score=41.64 Aligned_cols=53 Identities=6% Similarity=-0.041 Sum_probs=42.9
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeE----eeeEEEcCHhHHHHHHcCChHH
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDI----KRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~----~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
.-+..+++++..+.+.++.|+.+|+|.-+.. -.....||++|++.++.-.|..
T Consensus 179 eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~~ 235 (250)
T 1p4x_A 179 DLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLLAQV 235 (250)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHHHHHH
Confidence 3456689999999999999999999998654 4557799999999887655543
No 103
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=90.48 E-value=0.062 Score=40.76 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=25.3
Q ss_pred HHHhhccCCceEEee-----EeeeEEEcCHhHHHHHH
Q 031936 23 VIKKFGLFVGLPAQD-----IKRETRVLTDEGKKYAA 54 (150)
Q Consensus 23 ~l~sL~~kglI~~e~-----~~~~~~~LTeEG~~yl~ 54 (150)
++..|+.+|+|++.. .+++.|.+|+.|++.+.
T Consensus 54 ~l~~Le~~GlI~~~~~~~~rpektvY~ITe~Gr~~l~ 90 (180)
T 2rkh_A 54 SIELLRYEGLVEAVDDGQGMEDDAMLAISAAGRRELH 90 (180)
T ss_dssp CTHHHHHTTSEECCC--------CEEEECHHHHHHHH
T ss_pred HHHHHHHCCCeeeeecCCCCCccceeeeCHHHHHHHH
Confidence 789999999996554 46889999999999875
No 104
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=90.06 E-value=0.24 Score=34.05 Aligned_cols=54 Identities=9% Similarity=-0.123 Sum_probs=43.7
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHHHHcCChHHH
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~yl~~GsPE~r 61 (150)
.-+..+|++...|-..++.|+..|+|..+.. ....|.||++|..-+.+-..++.
T Consensus 36 eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~~~~ 90 (118)
T 3f6o_A 36 ELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLAEQQ 90 (118)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHHHHH
Confidence 3456689999999999999999999998654 45789999999887766555544
No 105
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=89.90 E-value=0.82 Score=36.66 Aligned_cols=52 Identities=6% Similarity=0.004 Sum_probs=45.4
Q ss_pred cccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHHHHcCChHHHHHh
Q 031936 11 VSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKYAAEGSSEIQLFL 64 (150)
Q Consensus 11 ~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~yl~~GsPE~rl~~ 64 (150)
..+|++...|..++..|...|.++.++. -...|.||+.|.+.+..| ..|+|.
T Consensus 53 ~~~Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~~g~~~l~~~--~~ri~~ 105 (266)
T 3l09_A 53 ERMGLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSDSALTQTRAV--AGRIYG 105 (266)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHTT--HHHHHS
T ss_pred HHcCCCchHHHHHHHHHHHCCCeeeeecCCcceEEECHHHHHHHHHH--HHHhcC
Confidence 4579999999999999999999998754 234899999999999999 778887
No 106
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=89.88 E-value=0.43 Score=35.25 Aligned_cols=41 Identities=7% Similarity=-0.129 Sum_probs=35.6
Q ss_pred CChHHHHHHHHhhccCCceEEeeE---------eeeEEEcCHhHHHHHHc
Q 031936 15 VDAQLNESVIKKFGLFVGLPAQDI---------KRETRVLTDEGKKYAAE 55 (150)
Q Consensus 15 ~~~~~v~~~l~sL~~kglI~~e~~---------~~~~~~LTeEG~~yl~~ 55 (150)
++...|.+.|+.|...|+|..... ....|.||++|...+.+
T Consensus 58 lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~ 107 (151)
T 3u1d_A 58 ETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRA 107 (151)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHH
Confidence 899999999999999999997533 45699999999999854
No 107
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=89.65 E-value=0.14 Score=33.96 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=30.6
Q ss_pred HHHhhcccCCCCChHHHhcC--C-CchhhhhHhhhhhcchH
Q 031936 61 QLFLAVPAECSILKDELQKK--P-DSALFEIGCSQSVETNK 98 (150)
Q Consensus 61 rl~~~l~~~g~~~~~eL~~~--l-g~~~~kIg~g~a~K~d~ 98 (150)
+||++|.+.+..++.+|.+. + ...+...|+||++|+|.
T Consensus 14 ~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaREdK 54 (77)
T 2l01_A 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDK 54 (77)
T ss_dssp HHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCc
Confidence 68999987555899999977 5 56678889999999553
No 108
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=87.53 E-value=0.33 Score=40.57 Aligned_cols=49 Identities=10% Similarity=-0.016 Sum_probs=39.6
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEee----EeeeEEEcCHhHHHHHHcC
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQD----IKRETRVLTDEGKKYAAEG 56 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~----~~~~~~~LTeEG~~yl~~G 56 (150)
.-+..++++...|.+.++.|+.+|||.-++ +-.....||++|++.++.=
T Consensus 425 ~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~ 477 (487)
T 1hsj_A 425 EIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKL 477 (487)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHH
Confidence 335568999999999999999999998754 4455789999999876543
No 109
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=86.82 E-value=0.55 Score=34.08 Aligned_cols=47 Identities=4% Similarity=-0.104 Sum_probs=38.8
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHHHH
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKYAA 54 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~yl~ 54 (150)
.-+..+|++...|-..++.|+..|+|..+.. ....|.||++|...+.
T Consensus 76 eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~ 123 (151)
T 3f6v_A 76 NLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLR 123 (151)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHH
Confidence 3456689999999999999999999998654 3467899999987664
No 110
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=86.63 E-value=0.24 Score=35.82 Aligned_cols=51 Identities=12% Similarity=-0.003 Sum_probs=37.2
Q ss_pred cCcccccccCCChHHHHHHHHhhccC-CceEEeeEe----eeEEEcCHhHHHHHHc
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLF-VGLPAQDIK----RETRVLTDEGKKYAAE 55 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~k-glI~~e~~~----~~~~~LTeEG~~yl~~ 55 (150)
|-++.|..+++++..|-+.++.||.. |.--++... -..+.||++|+.++..
T Consensus 40 S~s~AA~~L~iSqsavS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll~~ 95 (135)
T 2ijl_A 40 SISAAGRAMDMSYRRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLER 95 (135)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHHHH
Confidence 45677888999999999999999996 433233332 1579999999998744
No 111
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=86.52 E-value=0.66 Score=31.86 Aligned_cols=45 Identities=7% Similarity=-0.103 Sum_probs=36.3
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHH
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKK 51 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~ 51 (150)
+.-+..+|+++..|-+.++.|+..|+|..+.. ....|.||+++..
T Consensus 38 ~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~ 83 (118)
T 2jsc_A 38 GQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLA 83 (118)
T ss_dssp TTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHH
Confidence 34455679999999999999999999988643 4467899998754
No 112
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=86.41 E-value=0.34 Score=38.14 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=41.2
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEe----eeEEEcCHhHHHHHHcCChHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIK----RETRVLTDEGKKYAAEGSSEIQ 61 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~----~~~~~LTeEG~~yl~~GsPE~r 61 (150)
+..+++++..+.+.++.|+.+|+|.-.... .....||++|++....=.|+..
T Consensus 57 ~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~~~ 112 (250)
T 1p4x_A 57 VSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVTLFD 112 (250)
T ss_dssp HHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHHHHHH
Confidence 455789999999999999999999875433 3467899999998766666543
No 113
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=85.81 E-value=0.6 Score=30.62 Aligned_cols=44 Identities=7% Similarity=-0.110 Sum_probs=36.2
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEe-eeEEEcCHhHHHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIK-RETRVLTDEGKKYA 53 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~-~~~~~LTeEG~~yl 53 (150)
+..+|+++..|-+.++.|+..|+|..+... ...|.||+++...+
T Consensus 43 a~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l 87 (98)
T 3jth_A 43 CAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAM 87 (98)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHH
Confidence 455799999999999999999999876543 56789999886654
No 114
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=85.35 E-value=0.6 Score=31.59 Aligned_cols=43 Identities=7% Similarity=-0.022 Sum_probs=35.3
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKY 52 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~y 52 (150)
+..+|+++..|.+.++.|+..|+|..+.. ....|.||++|..-
T Consensus 45 a~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~ 88 (108)
T 2kko_A 45 ATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVAR 88 (108)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHH
Confidence 45679999999999999999999987654 34578999988543
No 115
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=85.35 E-value=0.22 Score=37.38 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=43.1
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCCh
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsP 58 (150)
|-+++|..+++.+.+|-+.++.||..==+..-.+....+.||++|+.++..--+
T Consensus 17 s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~ 70 (291)
T 3szp_A 17 SYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSP 70 (291)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCEEEETTEEEECHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCceEeecCCCcccCHhHHHHHHHHHH
Confidence 456778889999999999999999974445555567889999999998855433
No 116
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=85.10 E-value=0.24 Score=38.02 Aligned_cols=54 Identities=7% Similarity=-0.013 Sum_probs=43.0
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCCh
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsP 58 (150)
|-++.|..+++.+.+|-+.++.||..==+..-.+....+.||++|+.++..-.+
T Consensus 26 s~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~~ 79 (310)
T 2esn_A 26 NVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAA 79 (310)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEEETTEEEECHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCChHHHHHHHHHHHHhhCCcceeecCCCccccHHHHHHHHHHHH
Confidence 446778889999999999999999963344445567789999999999866544
No 117
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=85.07 E-value=0.54 Score=31.52 Aligned_cols=43 Identities=9% Similarity=-0.048 Sum_probs=35.5
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKK 51 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~ 51 (150)
-+..+|+++..|.+.++.|+..|+|..... ....|.||+++-.
T Consensus 45 la~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~ 88 (106)
T 1r1u_A 45 ISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVA 88 (106)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHH
Confidence 355679999999999999999999988654 3467899998854
No 118
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=84.59 E-value=0.35 Score=30.35 Aligned_cols=39 Identities=5% Similarity=-0.098 Sum_probs=30.3
Q ss_pred CcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcC
Q 031936 6 SSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLT 46 (150)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LT 46 (150)
.+.-|..+|++.+.|.+.++.|+..|+|.. ...-.|.|+
T Consensus 28 ~~eLA~~lglsr~tv~~~l~~L~~~G~I~~--~~~G~y~lg 66 (67)
T 2heo_A 28 IFQLVKKCQVPKKTLNQVLYRLKKEDRVSS--PSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHTTSEEE--EETTEEEEC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCcEec--CCCceEeeC
Confidence 344466789999999999999999999765 334567765
No 119
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=84.29 E-value=0.2 Score=38.87 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCCh
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsP 58 (150)
|-+++|..+++.+.+|-+.++.||..==+..-.+....+.||++|+.++..--+
T Consensus 17 s~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a~~ 70 (312)
T 2h9b_A 17 SFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIK 70 (312)
T ss_dssp ------------------------------------------------------
T ss_pred CHHHHHHHhcCCccHHHHHHHHHHHHhCCEeEeeCCCCceECHHHHHHHHHHHH
Confidence 567888999999999999999999985555556677889999999998765543
No 120
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=84.20 E-value=0.62 Score=33.40 Aligned_cols=42 Identities=10% Similarity=-0.036 Sum_probs=33.7
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEEeeEe------eeEEEcCHh
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPAQDIK------RETRVLTDE 48 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~------~~~~~LTeE 48 (150)
+.-|..+|++...|.+.+..|..+|+|..+... ...|.||+=
T Consensus 55 ~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL 102 (135)
T 2v79_A 55 NQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPL 102 (135)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHH
Confidence 344667899999999999999999999996543 358888753
No 121
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=83.64 E-value=0.24 Score=38.07 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=41.8
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcC
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEG 56 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~G 56 (150)
|-+++|..+++.+.+|-+.++.||..==+..-.+....+.||++|+.++..-
T Consensus 18 s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a 69 (305)
T 3fxq_A 18 SLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHA 69 (305)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHTSCSEEECSSSEEECHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEEecCCCccCCHhHHHHHHHH
Confidence 4567788899999999999999999744444455678899999999987543
No 122
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=83.55 E-value=0.16 Score=38.46 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=38.0
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcC
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEG 56 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~G 56 (150)
|-+++|..+++.+.+|-+.++.||..==+..-.+....+.||++|+.++..-
T Consensus 17 s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a 68 (294)
T 1ixc_A 17 NMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDA 68 (294)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCBC-----CCBCHHHHHHHHHH
T ss_pred CHHHHHHHhCCCcchHHHHHHHHHHHHCCEEEEeCCCCeeECHhHHHHHHHH
Confidence 4567788899999999999999999733334445667899999999988544
No 123
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=83.06 E-value=0.33 Score=33.40 Aligned_cols=49 Identities=8% Similarity=-0.100 Sum_probs=34.4
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEee--EeeeEEEcCHhHHHHHHcCC
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQD--IKRETRVLTDEGKKYAAEGS 57 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~--~~~~~~~LTeEG~~yl~~Gs 57 (150)
-+..+|+++..|.+.++.|+.+|+|.... .....+.++..|...+..-.
T Consensus 47 la~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~~~~~~~~~~~ 97 (152)
T 1ku9_A 47 IMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSSIKDIA 97 (152)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeecchHHHHHHHH
Confidence 34567999999999999999999999863 33344445545654444333
No 124
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=82.62 E-value=0.28 Score=32.56 Aligned_cols=44 Identities=7% Similarity=-0.101 Sum_probs=35.4
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKYA 53 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~yl 53 (150)
+..+|+++..|-..++.|+..|+|..+.. ....|.||+++-.-+
T Consensus 43 a~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~ 87 (102)
T 3pqk_A 43 EQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQL 87 (102)
T ss_dssp HHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHH
Confidence 44579999999999999999999987543 357899999865543
No 125
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=82.61 E-value=0.25 Score=40.33 Aligned_cols=45 Identities=7% Similarity=0.070 Sum_probs=0.0
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHH
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAA 54 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~ 54 (150)
..-|..++++...|.+.++.|+.+|+|.... .-..||++|++.++
T Consensus 38 ~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~~~---~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 38 RSLSETMGITERVLRTETDVLKQLNLIEPSK---SGMTLTERGLEVYQ 82 (345)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe---cceEEcHHHHHHHH
Confidence 3446778999999999999999999997543 35899999997664
No 126
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=82.49 E-value=0.62 Score=32.75 Aligned_cols=34 Identities=9% Similarity=0.018 Sum_probs=26.9
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEEeeEee
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKR 40 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~ 40 (150)
+.-|..++++..+|.+++..|+.+|+|+.+....
T Consensus 55 ~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~ 88 (128)
T 2vn2_A 55 AELAERMTVSAAECMEMVRRLLQKGMIAIEEHTD 88 (128)
T ss_dssp HHHHHTSSSCHHHHHHHHHHHHHTTSSEECC---
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEEC
Confidence 3445668999999999999999999999976643
No 127
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=82.46 E-value=1.6 Score=28.26 Aligned_cols=44 Identities=7% Similarity=-0.078 Sum_probs=34.2
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEe-------eeEEEcCHhHHHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIK-------RETRVLTDEGKKYA 53 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~-------~~~~~LTeEG~~yl 53 (150)
+..+|++...|.+.++.|+..|+|...... ...|.+|++..+.+
T Consensus 43 a~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~ 93 (109)
T 2d1h_A 43 ADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKI 93 (109)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHH
Confidence 456799999999999999999999987542 45688888554443
No 128
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=82.30 E-value=0.26 Score=38.26 Aligned_cols=52 Identities=10% Similarity=-0.092 Sum_probs=0.0
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcC
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEG 56 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~G 56 (150)
|-+++|..+++.+.+|-+.++.||..==+..-.+....+.||++|+.++..-
T Consensus 30 s~t~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a 81 (315)
T 1uth_A 30 SVSTAGEKLGLTQPAVSNSLKRLRTALNDDLFLRTSKGMEPTPYALHLAEPV 81 (315)
T ss_dssp ----------------------------------------------------
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCcceeecCCCccCCHHHHHHHHHH
Confidence 5677888999999999999999999855555566778899999999987543
No 129
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=82.23 E-value=0.27 Score=38.43 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCC
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGS 57 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~Gs 57 (150)
|-+++|..+++.+.+|-+.++.||..==+..-.+....+.||++|+.++..--
T Consensus 17 S~s~AA~~L~isq~avS~~I~~LE~~lG~~Lf~R~~r~v~lT~~G~~l~~~a~ 69 (313)
T 2h98_A 17 SISKAAEKLCIAQPPLSRQIQKLEEELGIQLFERGFRPAKVTEAGMFFYQHAV 69 (313)
T ss_dssp -----------------------------------------------------
T ss_pred CHHHHHHHhCCCccHHHHHHHHHHHHhCCeeEEcCCCCeEECHhHHHHHHHHH
Confidence 56788889999999999999999998555555667788999999999876543
No 130
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=81.83 E-value=0.28 Score=36.86 Aligned_cols=53 Identities=9% Similarity=0.151 Sum_probs=0.0
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCC
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGS 57 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~Gs 57 (150)
|-++.|..+++.+.+|-+.++.||..==+..-.+....+.||++|+.++..--
T Consensus 14 s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~ 66 (300)
T 3mz1_A 14 NFTRASASLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYYERAA 66 (300)
T ss_dssp -----------------------------------------------------
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEecCCCceeeCHhHHHHHHHHH
Confidence 56788889999999999999999997555565667788999999999875543
No 131
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=81.56 E-value=0.46 Score=31.66 Aligned_cols=41 Identities=10% Similarity=0.013 Sum_probs=35.6
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEG 49 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG 49 (150)
-|..+|++...|.+.+..|+..|+|......--.|.+|.+-
T Consensus 36 LAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~~~~ 76 (82)
T 1oyi_A 36 LTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFMTTEA 76 (82)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEESCC--
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCcceeccCc
Confidence 35568999999999999999999999998888999998764
No 132
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=81.48 E-value=0.29 Score=38.14 Aligned_cols=54 Identities=7% Similarity=0.020 Sum_probs=0.0
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEE-EcCHhHHHHHHcCCh
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETR-VLTDEGKKYAAEGSS 58 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~-~LTeEG~~yl~~GsP 58 (150)
|-+++|..+++.+.+|-+.++.||..==+..-.+....+ .||++|+.++..-.+
T Consensus 18 s~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~r~~~~lT~~G~~l~~~a~~ 72 (324)
T 1al3_A 18 NVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVTPAGQEIIRIARE 72 (324)
T ss_dssp -------------------------------------------------------
T ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHhCCEEEEECCCCcceeCHhHHHHHHHHHH
Confidence 667888999999999999999999974455555566777 899999998765543
No 133
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=81.24 E-value=0.71 Score=31.91 Aligned_cols=45 Identities=11% Similarity=-0.085 Sum_probs=34.9
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHH
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKY 52 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~y 52 (150)
.-+..+|+++..|-+.++.|+..|+|..... ....|.||++|-.-
T Consensus 61 eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~ 106 (122)
T 1u2w_A 61 DIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQ 106 (122)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHH
Confidence 3355679999999999999999999987543 34579999988543
No 134
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=80.71 E-value=0.79 Score=31.86 Aligned_cols=44 Identities=7% Similarity=-0.022 Sum_probs=35.6
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEEeeEe-eeEEEcCHhHH
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPAQDIK-RETRVLTDEGK 50 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~-~~~~~LTeEG~ 50 (150)
+.-+..+|+++..|-+.++.|+..|+|..+..- ...|.||+++-
T Consensus 63 ~ela~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l 107 (122)
T 1r1t_A 63 GDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHI 107 (122)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHH
Confidence 344556799999999999999999999986543 45789998874
No 135
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=80.68 E-value=0.67 Score=32.14 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=42.0
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEeeeE-------EEcCHhHHHHHHcCChHHHHHhhccc
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKRET-------RVLTDEGKKYAAEGSSEIQLFLAVPA 68 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~-------~~LTeEG~~yl~~GsPE~rl~~~l~~ 68 (150)
++..+|++.......+..|...|||.--...... ..+|.+|.+|+++-|-=.++++++++
T Consensus 22 s~e~l~Ise~~~~~il~~L~d~GyI~Gv~~~~~~~~i~~~~~~IT~~GleYL~ENS~mkKa~k~lK~ 88 (102)
T 2hgc_A 22 SENDIGVTEDQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKENGTWSKAYKTIKE 88 (102)
T ss_dssp CHHHHTSCHHHHHHHHHHHHHHTSEECCEESSSSEECCSSCCEECHHHHHHHHHHTCSCCC------
T ss_pred CHHhcCCCHHHHHHHHHHHHHCCCccceEEEeCcceeeccCceECHHHHHHHHHChHHHHHHHHHHH
Confidence 3566799999999999999999998764331111 45999999999988776666777664
No 136
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=80.48 E-value=0.87 Score=30.51 Aligned_cols=25 Identities=4% Similarity=-0.059 Sum_probs=22.5
Q ss_pred ccccCCChHHHHHHHHhhccCCceE
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLP 34 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~ 34 (150)
+..++++...|.+.++.|+.+|||.
T Consensus 43 a~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 43 RYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3457899999999999999999998
No 137
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=80.32 E-value=0.51 Score=36.03 Aligned_cols=52 Identities=13% Similarity=-0.008 Sum_probs=41.7
Q ss_pred cCcccccccCCChHHHHHHHHhhccC-CceEEeeEeeeEEEcCHhHHHHHHcCCh
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLF-VGLPAQDIKRETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~k-glI~~e~~~~~~~~LTeEG~~yl~~GsP 58 (150)
|-+++|..+++.+.+|-+.++.||.. |.-=+++. . .+.||++|+.++..--+
T Consensus 22 s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~-~-~~~lT~~G~~l~~~a~~ 74 (303)
T 3isp_A 22 SFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVRE-K-PCRATTAGIPLLRLAAQ 74 (303)
T ss_dssp CHHHHHTTTTCCHHHHHHHHHHHHHHHTSCCEECS-S-SCEECGGGHHHHHHHHH
T ss_pred CHHHHHHHhCCChHHHHHHHHHHHHHhCCeeEEcC-C-CCeeCchHHHHHHHHHH
Confidence 45677889999999999999999996 65444553 5 89999999999865543
No 138
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=80.30 E-value=0.28 Score=37.30 Aligned_cols=52 Identities=12% Similarity=0.115 Sum_probs=34.3
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEe-eeEEEcCHhHHHHHHcC
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIK-RETRVLTDEGKKYAAEG 56 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~-~~~~~LTeEG~~yl~~G 56 (150)
|-+++|..+++.+.+|-+.++.||..==+..-.+. ...+.||++|+.++..-
T Consensus 20 s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a 72 (306)
T 3fzv_A 20 SVAEASRKLYIAQPSISTAVKGLEESFGVQLFIRHHAQGVSLTPAGARFYRKA 72 (306)
T ss_dssp SHHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC---------CCHHHHHHHHHH
T ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHhCCeeEeecCCCCceECHhHHHHHHHH
Confidence 45677888999999999999999996434443443 67799999999988554
No 139
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=79.59 E-value=0.22 Score=37.93 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=42.1
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCC
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGS 57 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~Gs 57 (150)
|-+++|..+++.+.+|-+.++.||..==+..-.+....+.||++|+.++..-.
T Consensus 19 s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~a~ 71 (306)
T 3hhg_A 19 SFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQ 71 (306)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEETTSSSCEECHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEeecCCCeeECHhHHHHHHHHH
Confidence 45677888999999999999999997334444556778999999999875543
No 140
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=79.57 E-value=1.8 Score=30.24 Aligned_cols=37 Identities=8% Similarity=-0.067 Sum_probs=27.8
Q ss_pred CCChHHHHHHHHhhccCCceEEeeEeee-EE--EcCHhHH
Q 031936 14 TVDAQLNESVIKKFGLFVGLPAQDIKRE-TR--VLTDEGK 50 (150)
Q Consensus 14 ~~~~~~v~~~l~sL~~kglI~~e~~~~~-~~--~LTeEG~ 50 (150)
++++..|.+.++.|+.+|+|..+..... .| .+|++|.
T Consensus 39 ~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 39 DLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHH
Confidence 4799999999999999999998664332 33 3788774
No 141
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=78.39 E-value=1.8 Score=35.06 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=44.0
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEe-eeEEEcCHhHHHHHHcCChHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIK-RETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~-~~~~~LTeEG~~yl~~GsPE~ 60 (150)
-|...|+++..+.+.+..|.+.|++..+... ...|.+|+.+..++..++|..
T Consensus 49 LA~~~g~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~~l~~~~~~~ 101 (353)
T 4a6d_A 49 VAAGVRASAHGTELLLDICVSLKLLKVETRGGKAFYRNTELSSDYLTTVSPTS 101 (353)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHSTTSTTC
T ss_pred HHHhhCcCHHHHHHHHHHHHHCCCEEEeccCccceeeCCHHHHHHhhcCCchH
Confidence 4556799999999999999999999876543 568999999999999988853
No 142
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=77.99 E-value=1.6 Score=28.61 Aligned_cols=38 Identities=3% Similarity=-0.110 Sum_probs=33.5
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTD 47 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTe 47 (150)
|-.+|++.+.|-+++.+|+.+|+|......--.|.++-
T Consensus 36 AkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~W~~~~ 73 (75)
T 1sfu_A 36 SNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWFKNY 73 (75)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEEECT
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCCccCCC
Confidence 44689999999999999999999999998888887764
No 143
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=77.35 E-value=2.5 Score=32.91 Aligned_cols=48 Identities=10% Similarity=-0.047 Sum_probs=38.1
Q ss_pred ccCcccccccCCChHHHHHHHHhhccCCceEEeeE--e-----eeEEEcCHhHHH
Q 031936 4 MSSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDI--K-----RETRVLTDEGKK 51 (150)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~--~-----~~~~~LTeEG~~ 51 (150)
++.+.-+..+|+++..|...++.|+..|+|..... . ...|.||++|..
T Consensus 26 ~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~~ 80 (232)
T 2qlz_A 26 CYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKSY 80 (232)
T ss_dssp TCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchhh
Confidence 34455567789999999999999999999998332 3 678999998854
No 144
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=76.46 E-value=1.4 Score=28.90 Aligned_cols=41 Identities=5% Similarity=-0.133 Sum_probs=32.3
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEG 49 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG 49 (150)
-|..+|++...|.+.+..|+..|+|.......-.|.+++=.
T Consensus 33 LA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 33 LSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC---
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcH
Confidence 35568999999999999999999998876555788887543
No 145
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=75.46 E-value=2.3 Score=30.62 Aligned_cols=48 Identities=8% Similarity=-0.092 Sum_probs=36.4
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE 59 (150)
|..+|+.++.|.+.++.|+..|+|..... ....+-.++-.-+..+.||
T Consensus 146 A~~lg~sr~tvsR~l~~L~~~g~I~~~~~--~i~i~d~~~L~~~~~~~~e 193 (195)
T 3b02_A 146 ADATASIRESVSKVLADLRREGLIATAYR--RVYLLDLAALEREAGSALE 193 (195)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHTSEEEETT--EEEECCHHHHHHHHCSCCC
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEecCC--EEEEeCHHHHHHHhccccc
Confidence 45579999999999999999999988753 3556666666655555554
No 146
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=75.35 E-value=0.99 Score=34.37 Aligned_cols=42 Identities=5% Similarity=-0.074 Sum_probs=34.3
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE------eeeEEEcCHhHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI------KRETRVLTDEGKK 51 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~------~~~~~~LTeEG~~ 51 (150)
+..+|+++..|...++.|+..|+|..... ....|.||++|..
T Consensus 35 a~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~~ 82 (202)
T 2p4w_A 35 SRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLRL 82 (202)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEEE
T ss_pred HHHHCcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHHHH
Confidence 44579999999999999999999998654 4667788877753
No 147
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=74.22 E-value=2.9 Score=32.95 Aligned_cols=48 Identities=6% Similarity=-0.101 Sum_probs=40.6
Q ss_pred cccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 11 VSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 11 ~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
..+|++.+.|.-++..|...|.++.+..- |.||+.|.+....+ +.++|
T Consensus 31 ~~~Gi~e~avRtAlsRL~~~G~L~~~~~G---Y~LT~~~~~~~~~~--~~rI~ 78 (247)
T 3kfw_X 31 ADFGIKETTLRVALTRMVGAGDLVRSADG---YRLSDRLLARQRRQ--DEAMR 78 (247)
T ss_dssp TTTTCCHHHHHHHHHHHHHTTSEEEETTE---EEECHHHHHHHHHH--HHHHS
T ss_pred HHcCCChHHHHHHHHHHHHcCCeeccCCc---eeeCHHHHHHHHHH--HHHhc
Confidence 45799999999999999999999987654 99999999887766 44555
No 148
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=73.14 E-value=0.97 Score=30.60 Aligned_cols=41 Identities=5% Similarity=-0.024 Sum_probs=31.5
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEEeeEe-eeEEEcCH
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPAQDIK-RETRVLTD 47 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~-~~~~~LTe 47 (150)
+.-+..+++++..|-+.++.|+..|+|..+... ...|.+|.
T Consensus 49 ~ela~~l~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~ 90 (119)
T 2lkp_A 49 TDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYD 90 (119)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEch
Confidence 344566899999999999999999999876533 34566663
No 149
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=72.82 E-value=4.2 Score=28.92 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=37.4
Q ss_pred CCChHHHHHHHHhhccCCceEEeeEee---eEEEcCHhHHHHHHcCChH
Q 031936 14 TVDAQLNESVIKKFGLFVGLPAQDIKR---ETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 14 ~~~~~~v~~~l~sL~~kglI~~e~~~~---~~~~LTeEG~~yl~~GsPE 59 (150)
+.+...+.+.+..|...||+..+...- ..+.||+.|+.++++..+|
T Consensus 64 ~~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt~~g~~vL~~~~~~ 112 (134)
T 3aaf_A 64 DQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALTKKGRNWLHKANTE 112 (134)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEECSSTTCEEEEECHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHcCCceeecCcCccCceEEECHHHHHHHhCCccC
Confidence 456788999999999999999876321 2499999999999887664
No 150
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=72.82 E-value=2.1 Score=34.07 Aligned_cols=48 Identities=10% Similarity=0.071 Sum_probs=41.6
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
|...|+++..+.+.+.-|.+.|+++... ..|.+|+.+..++..++|.+
T Consensus 63 A~~~~~~~~~l~rlLr~L~~~gll~~~~---~~y~~t~~s~~~l~~~~~~~ 110 (352)
T 3mcz_A 63 AASFGMVEGKAAILLHALAALGLLTKEG---DAFRNTALTERYLTTTSADY 110 (352)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEET---TEEEECHHHHHHHSTTCTTC
T ss_pred HHHhCcChHHHHHHHHHHHHCCCeEecC---CeeecCHHHHhhccCCChhh
Confidence 4557999999999999999999998654 57999999999998888854
No 151
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=71.37 E-value=1.5 Score=28.27 Aligned_cols=39 Identities=5% Similarity=-0.110 Sum_probs=31.8
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcC
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLT 46 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LT 46 (150)
.-|..+|++...|.+.+..|+..|+|.......-.|.++
T Consensus 36 eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~ 74 (77)
T 1qgp_A 36 DLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA 74 (77)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEEEC
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceEec
Confidence 335668999999999999999999998876555677765
No 152
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=65.10 E-value=2.9 Score=27.85 Aligned_cols=31 Identities=0% Similarity=-0.136 Sum_probs=26.9
Q ss_pred CcccccccCCChHHHHHHHHhhccCCceEEe
Q 031936 6 SSASTVSVTVDAQLNESVIKKFGLFVGLPAQ 36 (150)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e 36 (150)
...-|..+|++...|..++..|+..|+|...
T Consensus 36 ~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 36 DEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3444667899999999999999999999887
No 153
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=64.04 E-value=8.1 Score=27.71 Aligned_cols=46 Identities=9% Similarity=-0.116 Sum_probs=34.9
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCC
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGS 57 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~Gs 57 (150)
|..+|+.++.|.+.++.|+..|+|.... .....+-.++-.-+.+|+
T Consensus 170 A~~lg~sr~tvsR~l~~l~~~g~I~~~~--~~i~i~d~~~L~~~a~~l 215 (216)
T 4ev0_A 170 AALAGTSRETVSRVLHALAEEGVVRLGP--GTVEVREAALLEEIAFGL 215 (216)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEEET--TEEEESCHHHHHHHHTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEecC--CEEEEeCHHHHHHHhhcc
Confidence 3456999999999999999999998754 445666677665555543
No 154
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=62.09 E-value=6.4 Score=25.82 Aligned_cols=45 Identities=4% Similarity=-0.178 Sum_probs=35.6
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHHH
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKYA 53 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~yl 53 (150)
.-+..+|+++..|-..++.|+.. +|..+.. ....|.||+++..-+
T Consensus 46 ela~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~ 91 (99)
T 2zkz_A 46 QIIQILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGI 91 (99)
T ss_dssp HHHHHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHH
Confidence 34556799999999999999999 9987544 345789999986543
No 155
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=62.08 E-value=3.3 Score=28.44 Aligned_cols=47 Identities=11% Similarity=-0.042 Sum_probs=34.7
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHH
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKK 51 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~ 51 (150)
++..-|...|+++..|.+.+..|+..|+|....-..--|.|+....+
T Consensus 28 s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~ 74 (129)
T 2y75_A 28 SLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDA 74 (129)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGG
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHHH
Confidence 33444567899999999999999999999887655567888876543
No 156
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=61.10 E-value=9.2 Score=27.36 Aligned_cols=46 Identities=17% Similarity=0.058 Sum_probs=33.4
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCC
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGS 57 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~Gs 57 (150)
|..+|+.++.|-+.++.|+..|+|.... .....+-.++..-+..+.
T Consensus 153 A~~lg~sr~tvsR~l~~L~~~g~I~~~~--~~i~i~d~~~L~~~~~~~ 198 (202)
T 2zcw_A 153 AAAVGSVRETVTKVIGELAREGYIRSGY--GKIQLLDLKGLKELAESR 198 (202)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEET--TEEEESCHHHHHHHHTSC
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEeCC--CEEEEeCHHHHHHHhccc
Confidence 3457999999999999999999998754 345556666655444443
No 157
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=60.40 E-value=2.1 Score=27.14 Aligned_cols=40 Identities=8% Similarity=-0.068 Sum_probs=30.5
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeE---eeeEEEcCHh
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDI---KRETRVLTDE 48 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~---~~~~~~LTeE 48 (150)
-|..+|++...|.+.++.|+..|+|..... ....|.++++
T Consensus 20 La~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 20 IAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 355679999999999999999999985432 3356666654
No 158
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=60.24 E-value=9.2 Score=23.89 Aligned_cols=25 Identities=8% Similarity=-0.039 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHhhccCCceEEeeE
Q 031936 14 TVDAQLNESVIKKFGLFVGLPAQDI 38 (150)
Q Consensus 14 ~~~~~~v~~~l~sL~~kglI~~e~~ 38 (150)
++++..|.+.++.|+.+|+|.....
T Consensus 38 ~~s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 38 TWSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CccHHHHHHHHHHHHHCCCeEEEec
Confidence 4788999999999999999998753
No 159
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=60.12 E-value=5.6 Score=29.65 Aligned_cols=49 Identities=14% Similarity=-0.090 Sum_probs=39.1
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
|..+|+.++.|.+.++.|+..|+|..... ....+..++-.-+..+.|.+
T Consensus 184 A~~lG~sr~tvsR~l~~L~~~g~I~~~~~--~i~i~d~~~L~~~a~~~~~~ 232 (250)
T 3e6c_C 184 GEITGVHHVTVSRVLASLKRENILDKKKN--KIIVYNLGELKHLSEQTSYY 232 (250)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEECSS--EEEESCHHHHHHHHTSSCCC
T ss_pred HHHhCCcHHHHHHHHHHHHHCCCeEeCCC--EEEEecHHHHHHHHccCccc
Confidence 44579999999999999999999998764 46677777777776776654
No 160
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=58.95 E-value=4 Score=35.87 Aligned_cols=72 Identities=7% Similarity=0.007 Sum_probs=35.1
Q ss_pred ccccccCCChHHHHHHHHhhcc-----CCceEEeeEeeeEEEcCHhHHHHHHcC-------------Ch---HHHHHhhc
Q 031936 8 ASTVSVTVDAQLNESVIKKFGL-----FVGLPAQDIKRETRVLTDEGKKYAAEG-------------SS---EIQLFLAV 66 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~-----kglI~~e~~~~~~~~LTeEG~~yl~~G-------------sP---E~rl~~~l 66 (150)
.-+..++++...+...++.|.. .|+|+-.. ..|.|+++-...+.+. .| +..++++|
T Consensus 449 ~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g---~~y~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l 525 (583)
T 3lmm_A 449 VVARGLQSGKEAARNALEAARQTTVAGAPLIIAHD---GVWLLGNACREILRKVEPSPFSPVRYLSTDQAELTNAAMLWL 525 (583)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEET---TEEEECHHHHHHHTSCC-------------------------
T ss_pred HHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeC---CEEEECHHHHHHhcccccccccccccccCChhHHHHHHHHHH
Confidence 3345578999999999999998 77888765 6799999865555332 01 23456666
Q ss_pred ccCCCCChHHHhcCCC
Q 031936 67 PAECSILKDELQKKPD 82 (150)
Q Consensus 67 ~~~g~~~~~eL~~~lg 82 (150)
...|.++..|+.+.+|
T Consensus 526 ~~~g~it~~di~~l~~ 541 (583)
T 3lmm_A 526 SEVGDLATSDLMAMCG 541 (583)
T ss_dssp ----------------
T ss_pred HHcCCcCHHHHHHHHC
Confidence 6655566667666543
No 161
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=58.67 E-value=6.4 Score=30.71 Aligned_cols=47 Identities=9% Similarity=-0.008 Sum_probs=39.6
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE 59 (150)
|...|+++..+.+.+.-|.+.|+++. ....|.+|+.+..++..+.|.
T Consensus 46 a~~~~~~~~~l~r~L~~L~~~g~l~~---~~~~y~~t~~~~~~l~~~~~~ 92 (335)
T 2r3s_A 46 AQKCQTSERGMRMLCDYLVIIGFMTK---QAEGYRLTSDSAMFLDRQSKF 92 (335)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECHHHHHHTCTTSTT
T ss_pred HHHhCCCchHHHHHHHHHHhcCCeEe---cCCEEecCHHHHHHhccCCcH
Confidence 45578999999999999999999974 357899999998888777663
No 162
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=57.66 E-value=4.8 Score=28.04 Aligned_cols=35 Identities=6% Similarity=-0.110 Sum_probs=29.5
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEeeeEE
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETR 43 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~ 43 (150)
-|..+|++...|..|+..|+..|+|......-.++
T Consensus 44 La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~V 78 (134)
T 4ham_A 44 FASRIGVNPNTVSKAYQELERQEVIITVKGKGTFI 78 (134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEEE
Confidence 35678999999999999999999999887665444
No 163
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=55.64 E-value=8.2 Score=26.43 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=25.3
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI 38 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~ 38 (150)
+..++++...|.+.++.|+.+|+|.-...
T Consensus 49 a~~l~~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 49 SKSLKLDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEeeCC
Confidence 45579999999999999999999987654
No 164
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=55.55 E-value=6.9 Score=26.28 Aligned_cols=30 Identities=7% Similarity=0.032 Sum_probs=26.5
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEee
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQD 37 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~ 37 (150)
.-|..+|+....|..++..|+..|+|....
T Consensus 48 eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 48 KIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 346678999999999999999999998876
No 165
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=55.42 E-value=5.5 Score=25.75 Aligned_cols=27 Identities=4% Similarity=-0.143 Sum_probs=23.6
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEe
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQ 36 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e 36 (150)
|..+|+....|.+.+..|+.+|+|.-.
T Consensus 31 a~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 31 ADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 445788999999999999999999775
No 166
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=54.86 E-value=7.1 Score=31.13 Aligned_cols=46 Identities=9% Similarity=0.006 Sum_probs=39.8
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCCh
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsP 58 (150)
|...|+++..+.+.+.-|.+.|+++... ..|.+|+.+..++..++|
T Consensus 71 A~~~g~~~~~l~rlLr~L~~~gll~~~~---~~y~~t~~~~~~l~~~~~ 116 (359)
T 1x19_A 71 AADTGSVPPRLEMLLETLRQMRVINLED---GKWSLTEFADYMFSPTPK 116 (359)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEET---TEEEECHHHHHHSSSSCS
T ss_pred HHHhCcChHHHHHHHHHHHhCCCeEeeC---CeEecCHHHHHHhcCCCC
Confidence 4556899999999999999999998753 489999998889988877
No 167
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=53.79 E-value=12 Score=28.84 Aligned_cols=51 Identities=8% Similarity=-0.024 Sum_probs=39.8
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
+..+|++...+.+.++.|+..|||..+ ...|.|+...-.....-..-..+.
T Consensus 36 a~~~gl~~stv~r~l~~L~~~G~v~~~---~~~Y~Lg~~~~~l~~~~~~~~~l~ 86 (257)
T 2g7u_A 36 ATEAGLSRPAVRRILLTLQKLGYVAGS---GGRWSLTPRVLSIGQHYSESHALI 86 (257)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECGGGHHHHTTCCHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEeC---CCEEEEcHHHHHHHHHhhccCcHH
Confidence 445799999999999999999999875 378999998877655444444444
No 168
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=52.83 E-value=5.2 Score=30.53 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=37.4
Q ss_pred cCcccccccCCChHHHHHHHHhhccC-CceEEeeEee-----eEEEcCHhHHHHHHc
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLF-VGLPAQDIKR-----ETRVLTDEGKKYAAE 55 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~k-glI~~e~~~~-----~~~~LTeEG~~yl~~ 55 (150)
|-++.|..+++.+..+-+.++.|+.. |. ..-.+.. ....||+.|+.++..
T Consensus 36 s~~~aa~~l~~s~~~~s~~i~~le~~lg~-~L~~R~~~~lsg~~~~lt~~g~~l~~~ 91 (265)
T 1b9m_A 36 SISQGAKDAGISYKSAWDAINEMNQLSEH-ILVERATGGKGGGGAVLTRYGQRLIQL 91 (265)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTS-CCEEECCCC-----EEECHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCC-CeEEecCCCCCCCceEECHHHHHHHHH
Confidence 34566778999999999999999996 65 4444444 478999999998754
No 169
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=50.68 E-value=9.3 Score=26.64 Aligned_cols=33 Identities=3% Similarity=-0.258 Sum_probs=28.0
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEeee
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKRE 41 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~ 41 (150)
-|..+|++...|..++..|+..|+|......-.
T Consensus 34 La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~G~ 66 (129)
T 2ek5_A 34 LAAFHRINPATARNGLTLLVEAGILYKKRGIGM 66 (129)
T ss_dssp HHHHTTCCHHHHHHHHHHHHTTTSEEEETTTEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEEecCCEE
Confidence 356789999999999999999999988766543
No 170
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=50.64 E-value=8.2 Score=25.63 Aligned_cols=31 Identities=3% Similarity=0.088 Sum_probs=25.9
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEEee
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPAQD 37 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~ 37 (150)
+.-+..++++...|.+.+..|+.+|+|.-..
T Consensus 20 ~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 20 KQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3446678999999999999999999887654
No 171
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=50.44 E-value=7.5 Score=26.26 Aligned_cols=32 Identities=0% Similarity=-0.208 Sum_probs=27.0
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEee
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKR 40 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~ 40 (150)
-+..+|++...|..++..|+..|+|......-
T Consensus 39 La~~~~vSr~tvr~al~~L~~~Gli~~~~~~G 70 (113)
T 3tqn_A 39 ISTEYQINPLTVSKAYQSLLDDNVIEKRRGLG 70 (113)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEecCCe
Confidence 35668999999999999999999998766544
No 172
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=50.22 E-value=13 Score=24.91 Aligned_cols=25 Identities=4% Similarity=-0.075 Sum_probs=21.8
Q ss_pred CCChHHHHHHHHhhccCCceEEeeE
Q 031936 14 TVDAQLNESVIKKFGLFVGLPAQDI 38 (150)
Q Consensus 14 ~~~~~~v~~~l~sL~~kglI~~e~~ 38 (150)
+++...|.+.+..|+.+|+|.-+..
T Consensus 64 ~~s~sTVt~~L~rLe~KGlV~R~~~ 88 (99)
T 2k4b_A 64 EWSLATVKTLLGRLVKKEMLSTEKE 88 (99)
T ss_dssp CCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred CCCHhhHHHHHHHHHHCCCEEEEeC
Confidence 4678999999999999999987653
No 173
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=49.85 E-value=11 Score=28.84 Aligned_cols=47 Identities=11% Similarity=-0.089 Sum_probs=37.3
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHc
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAE 55 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~ 55 (150)
.-+..+|++...+.+.++.|+..|||..... ...|.|+...-.....
T Consensus 26 ela~~~gl~~stv~r~l~~L~~~G~v~~~~~-~~~Y~lg~~~~~lg~~ 72 (241)
T 2xrn_A 26 AIAQLVGLPRSTVQRIINALEEEFLVEALGP-AGGFRLGPALGQLINQ 72 (241)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHTTTSEEECGG-GCEEEECSHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC-CCeEEECHHHHHHHhh
Confidence 3455689999999999999999999987543 4679999887665433
No 174
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=48.72 E-value=7.8 Score=29.66 Aligned_cols=42 Identities=5% Similarity=-0.201 Sum_probs=34.6
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHH
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKK 51 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~ 51 (150)
.-+..+|++...+.+.++.|+..|||... ....|.|+...-+
T Consensus 28 ela~~~gl~~stv~r~l~~L~~~G~v~~~--~~~~Y~lg~~~~~ 69 (249)
T 1mkm_A 28 EIAEKFNMSVSNAYKYMVVLEEKGFVLRK--KDKRYVPGYKLIE 69 (249)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEEC--TTSCEEECTHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCcEEEC--CCCcEEECHHHHH
Confidence 34556899999999999999999999876 4568999886543
No 175
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=46.23 E-value=17 Score=26.25 Aligned_cols=39 Identities=8% Similarity=-0.053 Sum_probs=29.9
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEe-eEeeeEEEcCHhHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQ-DIKRETRVLTDEGK 50 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e-~~~~~~~~LTeEG~ 50 (150)
|..+|+.++.|-+.++.|+..|+|... .. ....+-.++-
T Consensus 174 A~~lg~sr~tvsR~l~~l~~~g~I~~~~~~--~i~i~d~~~L 213 (220)
T 2fmy_A 174 ALMLGTTRQTVSVLLNDFKKMGILERVNQR--TLLLKDLQKL 213 (220)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEESSSS--EEEESCHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHCCCEEEcCCC--EEEEcCHHHH
Confidence 445799999999999999999999986 54 4445555543
No 176
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=46.01 E-value=5.3 Score=25.85 Aligned_cols=31 Identities=0% Similarity=0.036 Sum_probs=25.4
Q ss_pred CcccccccCCChHHHHHHHHhhccCCceEEe
Q 031936 6 SSASTVSVTVDAQLNESVIKKFGLFVGLPAQ 36 (150)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e 36 (150)
.+.-+..++++...|.+.+..|+.+|+|.-.
T Consensus 19 v~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 19 AAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 3344667899999999999999999988543
No 177
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=45.78 E-value=9.7 Score=26.21 Aligned_cols=37 Identities=8% Similarity=-0.103 Sum_probs=30.1
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEc
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVL 45 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~L 45 (150)
-|..+|++...|..++..|+..|+|......-.++.-
T Consensus 43 La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
T 3neu_A 43 MGVKLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCeEEEecCCEEEEec
Confidence 3566899999999999999999999988765544433
No 178
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=45.24 E-value=20 Score=22.24 Aligned_cols=32 Identities=9% Similarity=0.036 Sum_probs=25.3
Q ss_pred CCChHHHHHHHHhhccCCceEEeeE--eeeEEEc
Q 031936 14 TVDAQLNESVIKKFGLFVGLPAQDI--KRETRVL 45 (150)
Q Consensus 14 ~~~~~~v~~~l~sL~~kglI~~e~~--~~~~~~L 45 (150)
+++...|.+.++.|+..|+|.-... ....|.+
T Consensus 49 ~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~~ 82 (83)
T 2fu4_A 49 EIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFEL 82 (83)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEE
T ss_pred CCCHhhHHHHHHHHHHCCCeEEEeeCCCceEeec
Confidence 8899999999999999999986543 2344544
No 179
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=43.62 E-value=11 Score=26.06 Aligned_cols=36 Identities=6% Similarity=-0.050 Sum_probs=29.1
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeEeeeEE
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETR 43 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~ 43 (150)
.-+..+|++...|..++..|+..|+|......-..+
T Consensus 40 ~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~G~~V 75 (126)
T 3by6_A 40 ETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFI 75 (126)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEecCCeEEE
Confidence 345668999999999999999999998876654443
No 180
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=43.56 E-value=8.1 Score=31.06 Aligned_cols=47 Identities=6% Similarity=0.027 Sum_probs=37.7
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE 59 (150)
-|...|+++..+.+.+.-|.+.|+++.+ ...|.+|+.+. ++..+.|-
T Consensus 56 LA~~~g~~~~~l~rlLr~l~~~g~l~~~---~~~y~~t~~s~-~L~~~~~~ 102 (363)
T 3dp7_A 56 ISGRTGLTRYAAQVLLEASLTIGTILLE---EDRYVLAKAGW-FLLNDKMA 102 (363)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTSEEEE---TTEEEECHHHH-HHHHCHHH
T ss_pred HHHHhCcCHHHHHHHHHHHhhCCCeEec---CCEEecccchH-HhhCCCcc
Confidence 3556799999999999999999999653 57899999995 55555553
No 181
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=42.87 E-value=15 Score=25.27 Aligned_cols=39 Identities=10% Similarity=-0.197 Sum_probs=30.3
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEE
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETR 43 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~ 43 (150)
|-..-|..+|++...|..++..|+..|+|......-.++
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G~~V 75 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGIGFFV 75 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTTEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcCCccEE
Confidence 334557789999999999999999999998876654443
No 182
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=42.75 E-value=14 Score=26.91 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=29.9
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGK 50 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~ 50 (150)
|..+|+.++.|-+.++.|+..|+|.+.. .....+..++-
T Consensus 182 A~~lg~sr~tvsR~l~~L~~~g~I~~~~--~~i~i~d~~~L 220 (231)
T 3e97_A 182 MARTSSSRETVSRVLKRLEAHNILEVSP--RSVTLLDLAAL 220 (231)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEECS--SCEEESCHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHCCcEEecC--CEEEEeCHHHH
Confidence 4457999999999999999999999865 34445554443
No 183
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=42.73 E-value=9 Score=29.59 Aligned_cols=40 Identities=8% Similarity=-0.061 Sum_probs=33.0
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKK 51 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~ 51 (150)
+..+|++...+.+.++.|+..|||...... .|.|+...-+
T Consensus 45 a~~~gl~kstv~r~l~tL~~~G~v~~~~~~--~Y~lg~~~~~ 84 (260)
T 2o0y_A 45 VEGTKLPKTTVVRLVATMCARSVLTSRADG--SYSLGPEMLR 84 (260)
T ss_dssp HHHHCCCHHHHHHHHHHHHHTTSEEECTTS--CEEECHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEECCCC--eEEecHHHHH
Confidence 455799999999999999999999886543 8999876543
No 184
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=41.60 E-value=1.6 Score=22.97 Aligned_cols=8 Identities=50% Similarity=0.655 Sum_probs=2.4
Q ss_pred CChHHHHH
Q 031936 56 GSSEIQLF 63 (150)
Q Consensus 56 GsPE~rl~ 63 (150)
||||+|+-
T Consensus 1 gspef~vq 8 (29)
T 3vhs_A 1 GSPEFQVQ 8 (29)
T ss_dssp ----CEEE
T ss_pred CCCceeee
Confidence 68887753
No 185
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=40.97 E-value=9.3 Score=25.05 Aligned_cols=31 Identities=6% Similarity=-0.077 Sum_probs=26.2
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeE
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDI 38 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~ 38 (150)
.-+..+|++...|..++..|+..|+|.....
T Consensus 40 eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g 70 (102)
T 1v4r_A 40 DIRAQFGVAAKTVSRALAVLKSEGLVSSRGA 70 (102)
T ss_dssp HHHHHSSSCTTHHHHHTTTTTTSSCCEEETT
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 3456789999999999999999999987553
No 186
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=40.39 E-value=12 Score=30.12 Aligned_cols=50 Identities=2% Similarity=0.030 Sum_probs=37.2
Q ss_pred cccccCC--ChH---HHHHHHHhhccCCceEEeeEe------eeEEEcCHhHHHHHHcCCh
Q 031936 9 STVSVTV--DAQ---LNESVIKKFGLFVGLPAQDIK------RETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 9 ~~~~~~~--~~~---~v~~~l~sL~~kglI~~e~~~------~~~~~LTeEG~~yl~~GsP 58 (150)
-|...|+ ++. .+.+.+.-|.+.|+++..... ...|.+|+.++.++...+|
T Consensus 62 LA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~ 122 (364)
T 3p9c_A 62 VAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDG 122 (364)
T ss_dssp HHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTTS
T ss_pred HHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCCC
Confidence 3445675 555 788999999999999876421 4689999999876666554
No 187
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=39.78 E-value=7.4 Score=28.73 Aligned_cols=39 Identities=3% Similarity=-0.139 Sum_probs=29.1
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTD 47 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTe 47 (150)
-|..+|++...|.+.++.|+.+|+|.........+.+++
T Consensus 30 ia~~lgl~~~tv~~~l~~Le~~G~i~~~~~~~r~i~~~~ 68 (196)
T 3k2z_A 30 IARRFRITPRGALLHLIALEKKGYIERKNGKPRALRISK 68 (196)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEECC---TTCCEESS
T ss_pred HHHHcCCCcHHHHHHHHHHHHCCCEEecCCCcceEEecC
Confidence 355679999999999999999999988766555555554
No 188
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=38.52 E-value=17 Score=26.02 Aligned_cols=38 Identities=5% Similarity=0.058 Sum_probs=28.6
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEG 49 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG 49 (150)
|..+|+.++.|.+.++.|+..|+|.... .....+-.++
T Consensus 176 A~~lg~sr~tvsR~l~~L~~~g~I~~~~--~~i~i~d~~~ 213 (220)
T 3dv8_A 176 ANHLGSHREVITRMLRYFQVEGLVKLSR--GKITILDSKR 213 (220)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEET--TEEEESCHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEeCC--CEEEEeCHHH
Confidence 4457999999999999999999998753 3344444444
No 189
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=38.28 E-value=19 Score=26.14 Aligned_cols=39 Identities=5% Similarity=-0.034 Sum_probs=29.9
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGK 50 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~ 50 (150)
|..+|+.++.|.+.++.|+..|+|..... ....+-.++.
T Consensus 187 A~~lg~sr~tvsR~l~~l~~~g~I~~~~~--~i~i~d~~~L 225 (232)
T 2gau_A 187 ATLSNMTVSNAIRTLSTFVSERMLALDGK--RIKIIDCDRL 225 (232)
T ss_dssp HHHTTSCHHHHHHHHHHHHHTTSEEEETT--EEEESCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEeeCCC--EEEEeCHHHH
Confidence 44579999999999999999999988754 3445555443
No 190
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=37.08 E-value=20 Score=26.73 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=28.6
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEE
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETR 43 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~ 43 (150)
+..+|++...|..|+..|+..|+|......-..+
T Consensus 38 a~~~gVSR~tVReAL~~L~~eGlv~~~~g~G~~V 71 (239)
T 1hw1_A 38 SELIGVTRTTLREVLQRLARDGWLTIQHGKPTKV 71 (239)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHCCcEEEecCCCcEe
Confidence 4568999999999999999999999987654433
No 191
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=36.81 E-value=15 Score=27.37 Aligned_cols=34 Identities=6% Similarity=-0.047 Sum_probs=28.4
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEE
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETR 43 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~ 43 (150)
+..+|++...|..++..|+..|+|++....-..+
T Consensus 46 a~~lgVSRtpVREAl~~L~~eGlv~~~~~~G~~V 79 (222)
T 3ihu_A 46 VAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVI 79 (222)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEecCCCeEE
Confidence 4568999999999999999999999977654433
No 192
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=36.52 E-value=18 Score=26.59 Aligned_cols=42 Identities=10% Similarity=-0.092 Sum_probs=33.4
Q ss_pred ccccC-CChHHHHHHHHhhccCCceEEeeEe------eeEEEcCHhHHH
Q 031936 10 TVSVT-VDAQLNESVIKKFGLFVGLPAQDIK------RETRVLTDEGKK 51 (150)
Q Consensus 10 ~~~~~-~~~~~v~~~l~sL~~kglI~~e~~~------~~~~~LTeEG~~ 51 (150)
+..++ ++...|-..++.|+..|+|++.+.. ...|.++.++-.
T Consensus 43 ~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~ 91 (182)
T 4g6q_A 43 AELLPDVATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGD 91 (182)
T ss_dssp HHHCTTBCHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTT
T ss_pred HHHhcCCCHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccccc
Confidence 34454 7888999999999999999986654 578999987743
No 193
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.51 E-value=17 Score=24.48 Aligned_cols=27 Identities=7% Similarity=-0.043 Sum_probs=22.9
Q ss_pred ccCCChHHHHHHHHhhccCCceEEeeE
Q 031936 12 SVTVDAQLNESVIKKFGLFVGLPAQDI 38 (150)
Q Consensus 12 ~~~~~~~~v~~~l~sL~~kglI~~e~~ 38 (150)
..++++..|-+.++.|+.++||.....
T Consensus 62 ~tnL~~~~vtkiLK~LE~k~lIK~Vks 88 (95)
T 2yu3_A 62 KSNLPLTEINKILKNLESKKLIKAVKS 88 (95)
T ss_dssp HHTCCHHHHHHHHHHHHHHTSEEEECC
T ss_pred HhCCCHHHHHHHHHHHHhCCCEEEecC
Confidence 458899999999999999999986543
No 194
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=36.26 E-value=7 Score=27.74 Aligned_cols=46 Identities=9% Similarity=-0.075 Sum_probs=34.9
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHH
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKK 51 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~ 51 (150)
++..-|...++++.-|.+.+..|...|+|...+- .--|.|+....+
T Consensus 32 ~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L~~~p~~ 77 (149)
T 1ylf_A 32 TSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGLLKDLHE 77 (149)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGG
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEeCCChhh
Confidence 3334466789999999999999999999998776 677888876544
No 195
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=36.22 E-value=13 Score=28.90 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=37.8
Q ss_pred cccccCCChHHHHHHHH-hhccCCceEEeeEeeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 9 STVSVTVDAQLNESVIK-KFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~-sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
.|..+|+++..+.+.++ .|...|+|.... .-.+.|+.|.+|+..+ |+-.+|
T Consensus 285 ~a~~lg~~~~tl~~~l~~~l~~~gli~~~~---~g~~~t~~~~~~~~~~-~~~~~~ 336 (338)
T 3pfi_A 285 IAAALSEDENTIEDVIEPYLLANGYIERTA---KGRIASAKSYSALKLN-YEKTLF 336 (338)
T ss_dssp HHHHTTCCHHHHHHTTHHHHHHTTSEEEET---TEEEECHHHHHHHHHH-TC----
T ss_pred HHHHhCCCHHHHHHHHhHHHHHcCceecCC---CcccccHHHHHHhccC-Ccchhc
Confidence 35668999999999998 888999997654 3468999999999755 444444
No 196
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=35.64 E-value=5 Score=32.74 Aligned_cols=41 Identities=5% Similarity=-0.129 Sum_probs=33.1
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCH
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTD 47 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTe 47 (150)
..-+...|++...|..++++|+.+|+|....-....|...+
T Consensus 36 ~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av~ 76 (342)
T 3qph_A 36 KEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAYS 76 (342)
T ss_dssp SCCSSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEECC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEEcC
Confidence 34466689999999999999999999998866566676653
No 197
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=35.27 E-value=20 Score=26.48 Aligned_cols=28 Identities=0% Similarity=-0.084 Sum_probs=24.5
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEee
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQD 37 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~ 37 (150)
|..+|+.++.|.+.++.|+..|+|....
T Consensus 200 A~~lG~sr~tvsR~l~~L~~~GlI~~~~ 227 (243)
T 3la7_A 200 AEAIGSTRVTVTRLLGDLREKKMISIHK 227 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHCCcHHHHHHHHHHHHHCCCEEEcC
Confidence 4456999999999999999999999864
No 198
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=34.08 E-value=43 Score=24.80 Aligned_cols=44 Identities=7% Similarity=-0.070 Sum_probs=34.6
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEe-eEeeeEEEcCHhHHHHHH
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQ-DIKRETRVLTDEGKKYAA 54 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e-~~~~~~~~LTeEG~~yl~ 54 (150)
-+..+|++|..+--+++.|+-.|+|..- .-....|+|.+. +|..
T Consensus 30 Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L~~s--~y~~ 74 (165)
T 2vxz_A 30 IQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMD--QYRQ 74 (165)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHH--HHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEEEEEecHH--HHHH
Confidence 3556899999999999999999988764 445667788755 6665
No 199
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=34.06 E-value=14 Score=27.46 Aligned_cols=34 Identities=0% Similarity=-0.233 Sum_probs=28.7
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEE
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETR 43 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~ 43 (150)
+..+|++...|..++..|+..|+|++.+..-..+
T Consensus 42 a~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V 75 (218)
T 3sxy_A 42 SEKLGISFTPVRDALLQLATEGLVKVVPRVGFFV 75 (218)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEeCCCceEE
Confidence 5668999999999999999999999987764433
No 200
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=33.89 E-value=43 Score=24.00 Aligned_cols=38 Identities=8% Similarity=0.037 Sum_probs=28.8
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEG 49 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG 49 (150)
|..+|+.++.|-+.++.|+..|+|.... .....+-.++
T Consensus 184 A~~lg~sr~tvsR~l~~l~~~g~I~~~~--~~i~i~d~~~ 221 (227)
T 3d0s_A 184 AQLVGASRETVNKALADFAHRGWIRLEG--KSVLISDSER 221 (227)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEEET--TEEEESCHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHCCCEEecC--CEEEEcCHHH
Confidence 4457999999999999999999998864 3344444444
No 201
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=32.92 E-value=18 Score=26.06 Aligned_cols=29 Identities=3% Similarity=0.036 Sum_probs=25.2
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI 38 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~ 38 (150)
|..+|+.++.|.+.++.|+..|+|.....
T Consensus 185 A~~lg~sr~tvsR~l~~l~~~g~I~~~~~ 213 (227)
T 3dkw_A 185 AGHLSIQPETFSRIMHRLGDEGIIHLDGR 213 (227)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHTSEEESSS
T ss_pred HHHhCCCHHHHHHHHHHHHHCCcEEecCC
Confidence 45579999999999999999999988653
No 202
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=32.61 E-value=20 Score=27.22 Aligned_cols=34 Identities=3% Similarity=-0.196 Sum_probs=28.7
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEE
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETR 43 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~ 43 (150)
+..+|++...|..++..|+..|+|++.+..-..+
T Consensus 58 a~~lgVSRtpVREAL~~L~~eGlv~~~~~~G~~V 91 (239)
T 2hs5_A 58 CAALDVSRNTVREAFQILIEDRLVAHELNRGVFV 91 (239)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEeCCCeeEE
Confidence 5668999999999999999999999987654433
No 203
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=32.45 E-value=11 Score=29.90 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=36.5
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHc
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAE 55 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~ 55 (150)
|...|+++..+.+.+.-|.+.|+++. ....|.+|+.++.++..
T Consensus 62 A~~~g~~~~~l~rlLr~l~~~g~l~~---~~~~y~~t~~s~~l~~~ 104 (348)
T 3lst_A 62 AAATGTDADALRRVLRLLAVRDVVRE---SDGRFALTDKGAALRSD 104 (348)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECTTTGGGSTT
T ss_pred HHHhCcCHHHHHHHHHHHHhCCCEEe---cCCEEecCHHHHHHhcC
Confidence 55679999999999999999999986 45689999999887543
No 204
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=32.42 E-value=13 Score=25.77 Aligned_cols=29 Identities=3% Similarity=0.022 Sum_probs=24.9
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEE
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPA 35 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~ 35 (150)
+.-|..+|+++..|.+.++.|+..|+|.-
T Consensus 23 ~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 23 RELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 34466789999999999999999999974
No 205
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=31.41 E-value=18 Score=27.79 Aligned_cols=54 Identities=15% Similarity=-0.018 Sum_probs=39.1
Q ss_pred cccccccCCChHHHHHHHHh-hccCCceEEeeEeeeEEEcCHhHHHHHHcCChHHHHH
Q 031936 7 SASTVSVTVDAQLNESVIKK-FGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEIQLF 63 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~s-L~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE~rl~ 63 (150)
+..|..+|+++..+.+.++. +...|+|.... .-..+|+-|.+|+....|.+-++
T Consensus 268 ~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~---~g~~~~~~~~~~~~~~~~~~~~~ 322 (324)
T 1hqc_A 268 ATLATALSEDPGTLEEVHEPYLIRQGLLKRTP---RGRVPTELAYRHLGYPPPVGPLL 322 (324)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTSEEEET---TEEEECHHHHHHTTCCCCC----
T ss_pred HHHHHHhCCCHHHHHHHHhHHHHHhcchhcCC---ccceecHHHHHHHhcCCCCCCCC
Confidence 34466789999999998877 77889997443 55799999999996566655443
No 206
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=31.33 E-value=47 Score=23.99 Aligned_cols=48 Identities=4% Similarity=-0.100 Sum_probs=33.7
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChHH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSEI 60 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE~ 60 (150)
|..+|+.++.|.+.++.|+..|+ .. .......+..++-.-+..+.|-+
T Consensus 185 A~~lg~sr~tvsR~l~~L~~~gi-~~--~~~~i~I~d~~~L~~~~~~~~~~ 232 (237)
T 3fx3_A 185 AGRLGMKPESLSRAFSRLKAAGV-TV--KRNHAEIEDIALLRDYAESDPAD 232 (237)
T ss_dssp HHHTTCCHHHHHHHHHHHGGGTE-EC--CTTEEEESCHHHHHHHHCC----
T ss_pred HHHhCCCHHHHHHHHHHHHHCCe-Ee--eCCEEEEcCHHHHHHHhcCCccc
Confidence 45589999999999999999994 43 33556677777776666665543
No 207
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=30.95 E-value=11 Score=26.14 Aligned_cols=29 Identities=10% Similarity=-0.051 Sum_probs=24.7
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEE
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPA 35 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~ 35 (150)
+.-|..+|+++..+.+.++.|+..|+|.-
T Consensus 21 ~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 21 DEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 33456689999999999999999999874
No 208
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=30.79 E-value=22 Score=26.97 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=27.4
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeee
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRE 41 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~ 41 (150)
+..+|++...|..++..|+..|+|+..+..-.
T Consensus 56 a~~lgVSr~~VReAL~~L~~~Glv~~~~~~G~ 87 (237)
T 3c7j_A 56 ATLFGVSRMPVREALRQLEAQSLLRVETHKGA 87 (237)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCEEEeCCCce
Confidence 56689999999999999999999998865433
No 209
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=30.48 E-value=42 Score=26.88 Aligned_cols=41 Identities=7% Similarity=-0.031 Sum_probs=32.6
Q ss_pred HHHHHHHHhhccCCceEEeeE------eeeEEEcCHhHHHHHHcCCh
Q 031936 18 QLNESVIKKFGLFVGLPAQDI------KRETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 18 ~~v~~~l~sL~~kglI~~e~~------~~~~~~LTeEG~~yl~~GsP 58 (150)
..+.+.+.-|.+.|+++.... ....|.+|+.++.++.+.+|
T Consensus 78 ~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~ 124 (368)
T 3reo_A 78 VMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDG 124 (368)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTTS
T ss_pred hhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHHHhCCCCC
Confidence 478899999999999987632 14689999999988776654
No 210
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=30.27 E-value=15 Score=25.52 Aligned_cols=29 Identities=7% Similarity=0.008 Sum_probs=24.7
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEE
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPA 35 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~ 35 (150)
+.-|..+|+++..|.+.++.|+..|+|.-
T Consensus 25 ~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 25 SELATRAGLSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 33456689999999999999999999964
No 211
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=30.16 E-value=19 Score=23.65 Aligned_cols=36 Identities=8% Similarity=-0.014 Sum_probs=29.5
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcC
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLT 46 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LT 46 (150)
-|..+|+|...|-.+++.|...|.|... ..=+|.++
T Consensus 40 Iae~~GvdKKeVdKaik~LKkEgkI~SP--kRCyw~~~ 75 (80)
T 2lnb_A 40 LVKECQAPKRELNQVLYRMKKELKVSLT--SPATWCLG 75 (80)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEEE--ETTEEEES
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCccCC--CCceeeCC
Confidence 3566799999999999999999998776 45567766
No 212
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=29.79 E-value=29 Score=25.47 Aligned_cols=42 Identities=12% Similarity=-0.114 Sum_probs=31.7
Q ss_pred ccccCCCh-HHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHH
Q 031936 10 TVSVTVDA-QLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYA 53 (150)
Q Consensus 10 ~~~~~~~~-~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl 53 (150)
|..+|+.+ +.|-+.++.|+..|+|..... ....+-.++..-+
T Consensus 176 A~~lG~sr~etvsR~l~~l~~~glI~~~~~--~i~I~d~~~L~~~ 218 (238)
T 2bgc_A 176 GYSSGIAHSSAVSRIISKLKQEKVIVYKNS--CFYVQNLDYLKRY 218 (238)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHTTSEEEETT--EEEESCHHHHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHCCCEEecCC--EEEEeCHHHHHHH
Confidence 44579999 899999999999999988753 3555565554433
No 213
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=29.75 E-value=22 Score=25.73 Aligned_cols=29 Identities=7% Similarity=-0.091 Sum_probs=24.8
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI 38 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~ 38 (150)
|..+|+.++.|-+.++.|+..|+|.....
T Consensus 170 A~~lG~sr~tvsR~l~~L~~~g~I~~~~~ 198 (222)
T 1ft9_A 170 ANLIGSSRQTTSTALNSLIKEGYISRQGR 198 (222)
T ss_dssp HHHHCSCHHHHHHHHHHHHHTTSSEECST
T ss_pred HHHhCCcHHHHHHHHHHHHHCCcEEEcCC
Confidence 34469999999999999999999988653
No 214
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=28.89 E-value=22 Score=27.44 Aligned_cols=36 Identities=6% Similarity=-0.047 Sum_probs=30.8
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHh
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDE 48 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeE 48 (150)
+..+|++...+.+.++.|+..|||... ...|.|+..
T Consensus 43 a~~~gl~~stv~r~l~tL~~~G~v~~~---~~~Y~Lg~~ 78 (265)
T 2ia2_A 43 ARATDLTRATARRFLLTLVELGYVATD---GSAFWLTPR 78 (265)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHTSEEES---SSEEEECGG
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEec---CCEEEEcHH
Confidence 445799999999999999999999875 378999765
No 215
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=28.69 E-value=17 Score=25.69 Aligned_cols=28 Identities=7% Similarity=-0.113 Sum_probs=24.3
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEE
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPA 35 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~ 35 (150)
.-|..+|+++..|.+.++.|+..|+|.-
T Consensus 29 ela~~lg~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 29 ELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEee
Confidence 3456689999999999999999999974
No 216
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=28.32 E-value=9 Score=27.11 Aligned_cols=46 Identities=7% Similarity=-0.106 Sum_probs=36.8
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHH
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGK 50 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~ 50 (150)
++..-|...++++.-|...+..|...|+|...+-..--|.|+....
T Consensus 30 s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~ 75 (143)
T 3t8r_A 30 SLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAE 75 (143)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGG
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCcc
Confidence 3344467789999999999999999999998776666788875543
No 217
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=27.45 E-value=18 Score=27.13 Aligned_cols=30 Identities=3% Similarity=-0.009 Sum_probs=26.5
Q ss_pred cccccCCChHHHHHHHHhhccCCceEE--eeE
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPA--QDI 38 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~--e~~ 38 (150)
-+..+|++...|..++..|+..|+|++ .+.
T Consensus 34 La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~ 65 (239)
T 2di3_A 34 LSETLGVSRSSLREALRVLEALGTISTATGSG 65 (239)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTSEECCSTTS
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCeEeecccC
Confidence 356689999999999999999999999 665
No 218
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=26.86 E-value=12 Score=29.44 Aligned_cols=46 Identities=9% Similarity=0.066 Sum_probs=37.8
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcC
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEG 56 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~G 56 (150)
-|...|+++..+.+.+.-|.+.|++.-. ....|.+|+.++.+...+
T Consensus 44 lA~~~~~~~~~l~rlLr~l~~~gl~~~~--~~~~y~~t~~s~~l~~~~ 89 (332)
T 3i53_A 44 IASAAGAHADSLDRLLRHLVAVGLFTRD--GQGVYGLTEFGEQLRDDH 89 (332)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEC--TTSBEEECTTGGGGSTTC
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCcEEec--CCCeEEcCHhHHHHhcCC
Confidence 3556799999999999999999999854 246899999999886554
No 219
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.73 E-value=17 Score=25.29 Aligned_cols=28 Identities=11% Similarity=-0.076 Sum_probs=24.4
Q ss_pred cccccccCCChHHHHHHHHhhccCCceE
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLP 34 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~ 34 (150)
+.-|..+|+++..|.+.++.|+..|+|.
T Consensus 27 ~ela~~lg~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 27 RELADILNTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3346678999999999999999999997
No 220
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=26.49 E-value=61 Score=25.55 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=36.6
Q ss_pred ccccCC---ChHHHHHHHHhhccCCceEEeeE---e-----eeEEEcCHhHHHHHHcCCh
Q 031936 10 TVSVTV---DAQLNESVIKKFGLFVGLPAQDI---K-----RETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 10 ~~~~~~---~~~~v~~~l~sL~~kglI~~e~~---~-----~~~~~LTeEG~~yl~~GsP 58 (150)
|...|+ ++..+.+.+.-|.+.|+++.... . ...|.+|+.++ ++..++|
T Consensus 52 A~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~-~l~~~~~ 110 (358)
T 1zg3_A 52 ASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSK-LLISGKP 110 (358)
T ss_dssp HHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHH-TTCTTST
T ss_pred HHhcCCCCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHH-HHhCCCC
Confidence 455688 57789999999999999987510 1 47899999987 5556665
No 221
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=26.04 E-value=26 Score=27.23 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=36.0
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCCh
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsP 58 (150)
|...|+++..+.+.+.-|.+.|++.... ...|.+|+.++.+. +.|
T Consensus 48 a~~~~~~~~~l~r~Lr~L~~~g~l~~~~--~~~y~~t~~s~~l~--~~~ 92 (334)
T 2ip2_A 48 AAAVGSDAERIHRLMRLLVAFEIFQGDT--RDGYANTPTSHLLR--DVE 92 (334)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEET--TTEEEECHHHHTTS--SST
T ss_pred HHHhCcCHHHHHHHHHHHHhCCceEecC--CCeEecCHHHHHHh--CCC
Confidence 4557899999999999999999997642 35799999997555 444
No 222
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=25.98 E-value=20 Score=28.22 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=36.1
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCCh
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsP 58 (150)
|...|+++..+.+.++-|.+.|++.... ...|.+|+.++ ++..+.|
T Consensus 59 a~~~~~~~~~l~r~L~~L~~~g~~~~~~--~g~y~~t~~s~-~l~~~~~ 104 (360)
T 1tw3_A 59 AARTDTRPEALLRLIRHLVAIGLLEEDA--PGEFVPTEVGE-LLADDHP 104 (360)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSEEEEE--TTEEEECTTGG-GGSTTST
T ss_pred HHHhCcCHHHHHHHHHHHHHCCCEEecC--CCeEEeCHHHH-HHhcCCc
Confidence 4557999999999999999999998643 34799999875 4545544
No 223
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=25.82 E-value=31 Score=26.53 Aligned_cols=39 Identities=5% Similarity=-0.122 Sum_probs=31.8
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEG 49 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG 49 (150)
+..+|++...+.+.+..|+..|||.-.. ....|.|+..-
T Consensus 28 a~~lgl~ksT~~RlL~tL~~~G~v~~~~-~~~~Y~lG~~~ 66 (260)
T 3r4k_A 28 TRLSGMNKATVYRLMSELQEAGFVEQVE-GARSYRLGPQV 66 (260)
T ss_dssp HHHHCSCHHHHHHHHHHHHHTTSEEECS-SSSEEEECTTH
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEEcC-CCCcEEcCHHH
Confidence 4567999999999999999999998653 33678888763
No 224
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=25.75 E-value=22 Score=27.74 Aligned_cols=38 Identities=8% Similarity=-0.030 Sum_probs=30.2
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhH
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEG 49 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG 49 (150)
+..+|++...+.+.+..|+..|||.-.. ...|.|+..-
T Consensus 52 a~~lgl~ksTv~RlL~tL~~~G~v~~~~--~~~Y~LG~~~ 89 (275)
T 3mq0_A 52 TRFLDLPKSSAHGLLAVMTELDLLARSA--DGTLRIGPHS 89 (275)
T ss_dssp HHHHTCC--CHHHHHHHHHHTTSEEECT--TSEEEECTHH
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEECC--CCcEEehHHH
Confidence 4557999999999999999999998765 3579998763
No 225
>3r8n_O 30S ribosomal protein S15; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* 2qbd_O 2qbf_O 2qbh_O* 2qbj_O* ...
Probab=25.20 E-value=26 Score=23.30 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=14.4
Q ss_pred HcCChHHHHHhhcccCCCCChHHHhcCC
Q 031936 54 AEGSSEIQLFLAVPAECSILKDELQKKP 81 (150)
Q Consensus 54 ~~GsPE~rl~~~l~~~g~~~~~eL~~~l 81 (150)
.-||||.||.- |. ..|..|..++
T Consensus 20 DtGS~EvQiA~-LT----~rI~~Lt~Hl 42 (88)
T 3r8n_O 20 DTGSTEVQVAL-LT----AQINHLQGHF 42 (88)
T ss_dssp CTTCHHHHHHH-HH----HHHHHHHHHT
T ss_pred CCCCHHHHHHH-HH----HHHHHHHHHH
Confidence 45999999873 33 2344565554
No 226
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=25.01 E-value=21 Score=25.74 Aligned_cols=28 Identities=11% Similarity=-0.123 Sum_probs=24.3
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEE
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPA 35 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~ 35 (150)
.-|..+|++...|.+.++.|+..|+|.-
T Consensus 36 eLA~~lglS~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 36 ELSEQLKKPESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3456689999999999999999999963
No 227
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=24.82 E-value=37 Score=25.71 Aligned_cols=35 Identities=0% Similarity=-0.332 Sum_probs=28.8
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEeeeEE
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETR 43 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~ 43 (150)
-+...|++...|..++..|+..|+|......-...
T Consensus 39 La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V 73 (236)
T 3edp_A 39 LQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYV 73 (236)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEECCceEEE
Confidence 35668999999999999999999998876654443
No 228
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=24.56 E-value=17 Score=25.39 Aligned_cols=29 Identities=7% Similarity=-0.043 Sum_probs=24.9
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEE
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPA 35 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~ 35 (150)
+.-|..+|+++..|.+.++.|+..|+|.-
T Consensus 26 ~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 26 AELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 33456689999999999999999999984
No 229
>1a32_A Ribosomal protein S15; multiwavelength anomalous diffraction, protein-RNA, ribosomal protein interactions, ribosome, RNA-binding; 2.10A {Geobacillus stearothermophilus} SCOP: a.16.1.2 PDB: 1qd7_H
Probab=24.46 E-value=27 Score=23.20 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=8.7
Q ss_pred HcCChHHHHHh
Q 031936 54 AEGSSEIQLFL 64 (150)
Q Consensus 54 ~~GsPE~rl~~ 64 (150)
.-||||.||.-
T Consensus 20 DTGS~EvQIA~ 30 (88)
T 1a32_A 20 DTGSPEVQIAI 30 (88)
T ss_dssp CCCSHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 35999999773
No 230
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=24.43 E-value=33 Score=24.92 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=29.7
Q ss_pred ChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHH
Q 031936 16 DAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAA 54 (150)
Q Consensus 16 ~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~ 54 (150)
+-.-+..++..||..|+|+..+ ..--.||+.|+.-+.
T Consensus 97 sg~iiR~~LQqLE~~g~vek~~--~~GR~lT~~G~~~LD 133 (144)
T 3u5c_T 97 SGSINRKVLQALEKIGIVEISP--KGGRRISENGQRDLD 133 (144)
T ss_dssp CHHHHHHHHHHHHHTTSEECCS--SSSCEECHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCeeecC--CCCcEECHhHHHHHH
Confidence 4567788999999999998654 346689999998764
No 231
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=24.35 E-value=34 Score=24.71 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=29.7
Q ss_pred CChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHH
Q 031936 15 VDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYA 53 (150)
Q Consensus 15 ~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl 53 (150)
++...|..++..|+..|+|..... .-..+|+.|.+-+
T Consensus 93 vSr~tVR~AL~~Le~~GlV~~~~~--~G~~Vt~~~~~~l 129 (150)
T 2v7f_A 93 AGGSIIRKALQQLEAAGFVEKVPG--KGRVITPKGRSFL 129 (150)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEETT--TEEEECHHHHHHH
T ss_pred cchHHHHHHHHHHHHCCCEEEeCC--CceEECCCCHHHH
Confidence 777889999999999999987643 3466788887655
No 232
>4a5u_B 30S ribosomal protein S15; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Escherichia coli} PDB: 1p6g_O 1p87_O 2ykr_O* 3j18_O 3oar_O 3oaq_O 3ofb_O 3ofa_O 3ofp_O 3ofx_O 3ofy_O 3ofo_O 3r8o_O 3r8n_O 4gd1_O 4gd2_O 3i1m_O 2qan_O* 2qb9_O* 2qbb_O* ...
Probab=24.35 E-value=28 Score=23.17 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=14.1
Q ss_pred HcCChHHHHHhhcccCCCCChHHHhcCC
Q 031936 54 AEGSSEIQLFLAVPAECSILKDELQKKP 81 (150)
Q Consensus 54 ~~GsPE~rl~~~l~~~g~~~~~eL~~~l 81 (150)
.-||||.||.- |. ..+..|..++
T Consensus 20 DTGS~EvQiA~-LT----~rI~~L~~Hl 42 (88)
T 4a5u_B 20 DTGSTEVQVAL-LT----AQINHLQGHF 42 (88)
T ss_dssp CTTCHHHHHHH-HH----HHHHHHHHHC
T ss_pred CCCCHHHHHHH-HH----HHHHHHHHHH
Confidence 46999999773 33 2244555554
No 233
>2vqe_O 30S ribosomal protein S15; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1eg0_F* 1gix_R* 1hnw_O* 1hnx_O* 1hnz_O* 1hr0_O 1ibk_O* 1ibl_O* 1ibm_O 1jgo_R* 1jgp_R* 1jgq_R* 1ml5_R* 1xmo_O* 1xmq_O* 1xnq_O* 1xnr_O* 1yl4_R 2b64_O* 2b9m_O* ...
Probab=24.18 E-value=27 Score=23.26 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=14.4
Q ss_pred HcCChHHHHHhhcccCCCCChHHHhcCC
Q 031936 54 AEGSSEIQLFLAVPAECSILKDELQKKP 81 (150)
Q Consensus 54 ~~GsPE~rl~~~l~~~g~~~~~eL~~~l 81 (150)
.-||||.||.- |. ..|..|..++
T Consensus 21 DTGS~EvQIA~-LT----~rI~~Lt~Hl 43 (89)
T 2vqe_O 21 DTGSTEVQVAL-LT----LRINRLSEHL 43 (89)
T ss_dssp CCSSHHHHHHH-HH----HHHHHHHHHT
T ss_pred CCCCHHHHHHH-HH----HHHHHHHHHH
Confidence 45999999773 33 2344565554
No 234
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.07 E-value=87 Score=22.74 Aligned_cols=39 Identities=8% Similarity=0.284 Sum_probs=30.7
Q ss_pred CChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHc
Q 031936 15 VDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAE 55 (150)
Q Consensus 15 ~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~ 55 (150)
.+-.-+..++..||..|+|+-.+ ..--.||+.|+.-+.+
T Consensus 98 asg~iiR~~LQqLE~~g~Vek~~--~gGR~lT~~G~~~LD~ 136 (146)
T 3iz6_S 98 SSGAISRNILQQLQKMGIIDVDP--KGGRLITSQGRRDLDQ 136 (146)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEET--TTEEEECHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHCCCeEecC--CCCcEECHhHHHHHHH
Confidence 34567788999999999998654 3577899999987653
No 235
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=23.78 E-value=24 Score=28.16 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=36.2
Q ss_pred ccccCC------ChHHHHHHHHhhccCCceEEeeE--e----eeEEEcCHhHHHHHHcCCh
Q 031936 10 TVSVTV------DAQLNESVIKKFGLFVGLPAQDI--K----RETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 10 ~~~~~~------~~~~v~~~l~sL~~kglI~~e~~--~----~~~~~LTeEG~~yl~~GsP 58 (150)
|...|+ ++..+.+.++-|.+.|+++.... . ...|.+|+.++ ++..++|
T Consensus 69 A~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~-~L~~~~~ 128 (372)
T 1fp1_D 69 ASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGK-YLVPDES 128 (372)
T ss_dssp HTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGG-GGSTTCT
T ss_pred HHhcCCCCCCCcChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecCHHHH-HHhCCCC
Confidence 455677 67789999999999999986521 1 46899999987 5555555
No 236
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=23.70 E-value=17 Score=26.29 Aligned_cols=29 Identities=3% Similarity=-0.149 Sum_probs=0.0
Q ss_pred ccccCCChHHHHHHHHhhccCCceEEeeE
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPAQDI 38 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~e~~ 38 (150)
|..+|+.++.|-+.++.|+..|+|.....
T Consensus 171 A~~lg~sr~tvsR~l~~L~~~G~I~~~~~ 199 (213)
T 1o5l_A 171 SRLFGCARPALSRVFQELEREGYIEKHGR 199 (213)
T ss_dssp -----------------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 55689999999999999999999988653
No 237
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=23.48 E-value=45 Score=25.42 Aligned_cols=31 Identities=3% Similarity=-0.049 Sum_probs=26.3
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEee
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKR 40 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~ 40 (150)
-+...|++...|..|+..|+..|+|.. ...-
T Consensus 42 La~~~~vSr~tvr~Al~~L~~~G~i~~-~g~G 72 (248)
T 3f8m_A 42 IAEQFEVARETVRQALRELLIDGRVER-RGRT 72 (248)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEE-ETTE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEe-CCCE
Confidence 356689999999999999999999988 5443
No 238
>3ulw_A 30S ribosomal protein S15; structural genomics, IDP90515, CE structural genomics of infectious diseases, csgid, rRNA BIN translation; 2.36A {Campylobacter jejuni}
Probab=23.02 E-value=31 Score=23.19 Aligned_cols=12 Identities=42% Similarity=0.601 Sum_probs=9.3
Q ss_pred HcCChHHHHHhh
Q 031936 54 AEGSSEIQLFLA 65 (150)
Q Consensus 54 ~~GsPE~rl~~~ 65 (150)
.-||||.||.-.
T Consensus 24 DTGS~EVQIA~L 35 (93)
T 3ulw_A 24 DTGSTEVQVALL 35 (93)
T ss_dssp CSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 469999998744
No 239
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=22.77 E-value=42 Score=26.46 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=35.5
Q ss_pred ccccCCC---hHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCCh
Q 031936 10 TVSVTVD---AQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSS 58 (150)
Q Consensus 10 ~~~~~~~---~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsP 58 (150)
|...|++ +..+.+.++-|.+.|+++........|.+|+.++ ++..+.|
T Consensus 58 a~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~t~~s~-~L~~~~~ 108 (352)
T 1fp2_A 58 VSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASE-LLVRGSD 108 (352)
T ss_dssp HHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHH-TTSTTSS
T ss_pred HHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeCCHHHH-HHhCCCC
Confidence 4456774 6678899999999999986521146899999987 4556655
No 240
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=22.50 E-value=22 Score=22.93 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=22.6
Q ss_pred ccccCCChHHHHHHHHhhccCCceEE
Q 031936 10 TVSVTVDAQLNESVIKKFGLFVGLPA 35 (150)
Q Consensus 10 ~~~~~~~~~~v~~~l~sL~~kglI~~ 35 (150)
|..++++.++++.-++.|++.|.++-
T Consensus 28 A~~F~l~t~~~i~RI~~Le~~g~ltG 53 (72)
T 1wi9_A 28 AFQMGLRTQDAINRIQDLLTEGTLTG 53 (72)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHSSSCE
T ss_pred HHHhCCChHHHHHHHHHHHHCCCeEE
Confidence 56689999999999999999987764
No 241
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=22.39 E-value=15 Score=25.11 Aligned_cols=27 Identities=4% Similarity=-0.095 Sum_probs=23.5
Q ss_pred ccccccCCChHHHHHHHHhhccCCceE
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLP 34 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~ 34 (150)
.-|..+|++...+.+.++.|+..|+|.
T Consensus 23 ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 23 EIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 345667999999999999999999985
No 242
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=22.39 E-value=45 Score=25.23 Aligned_cols=31 Identities=3% Similarity=-0.167 Sum_probs=26.3
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEe
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIK 39 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~ 39 (150)
-+...|++...|..++..|+..|+|......
T Consensus 35 La~~~~vSr~tvr~Al~~L~~~g~i~~~~g~ 65 (239)
T 3bwg_A 35 LMAQFEVSKSTITKSLELLEQKGAIFQVRGS 65 (239)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCcEEEeCCc
Confidence 4567899999999999999999999876543
No 243
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=22.16 E-value=29 Score=25.06 Aligned_cols=45 Identities=11% Similarity=-0.034 Sum_probs=36.6
Q ss_pred cCcccccccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhH
Q 031936 5 SSSASTVSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEG 49 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG 49 (150)
++..-|...++++.-+...+..|...|+|...+-..--|.|+...
T Consensus 46 s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 90 (159)
T 3lwf_A 46 SLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence 344446778999999999999999999999887766678887544
No 244
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.80 E-value=21 Score=25.41 Aligned_cols=29 Identities=10% Similarity=-0.126 Sum_probs=24.8
Q ss_pred CcccccccCCChHHHHHHHHhhccCCceE
Q 031936 6 SSASTVSVTVDAQLNESVIKKFGLFVGLP 34 (150)
Q Consensus 6 ~~~~~~~~~~~~~~v~~~l~sL~~kglI~ 34 (150)
.+.-|..+|++...|.+.++.|+..|+|.
T Consensus 20 ~~~la~~lg~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 20 VADLAKKVGLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 33446678999999999999999999987
No 245
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.64 E-value=16 Score=25.53 Aligned_cols=29 Identities=7% Similarity=-0.094 Sum_probs=24.6
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEE
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPA 35 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~ 35 (150)
+.-|..+|+++..|.+.++.|+..|+|.-
T Consensus 25 ~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 25 REISKITGLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 34456789999999999999999999864
No 246
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=21.32 E-value=53 Score=26.79 Aligned_cols=49 Identities=12% Similarity=-0.009 Sum_probs=35.4
Q ss_pred cccCCChHHHHHHHHhhccCCceEEeeEeeeEEEcCHhHHHHHHcCChH
Q 031936 11 VSVTVDAQLNESVIKKFGLFVGLPAQDIKRETRVLTDEGKKYAAEGSSE 59 (150)
Q Consensus 11 ~~~~~~~~~v~~~l~sL~~kglI~~e~~~~~~~~LTeEG~~yl~~GsPE 59 (150)
...|++...+.++++.|...|++.....-...+-.-.+=-+.+.+|.++
T Consensus 319 ~~~gvS~~Ta~r~L~~L~e~GiL~~~~~gR~~~y~~~~~~~~l~~~~~~ 367 (373)
T 2qc0_A 319 ESGLAKRQTASVYLKQLCDIGVLEEVQSGKEKLFVHPKFVTLMTKDSNQ 367 (373)
T ss_dssp HTSSSCHHHHHHHHHHHHHTTSCEEC--CCSCEEECHHHHHHHHSSCCC
T ss_pred HHhCCCHHHHHHHHHHHHHCCcEEEecCCCceEEehHHHHHHHccCCcc
Confidence 4479999999999999999999887655555666666655556555553
No 247
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=20.54 E-value=39 Score=25.65 Aligned_cols=32 Identities=3% Similarity=-0.211 Sum_probs=26.7
Q ss_pred cccccCCChHHHHHHHHhhccCCceEEeeEee
Q 031936 9 STVSVTVDAQLNESVIKKFGLFVGLPAQDIKR 40 (150)
Q Consensus 9 ~~~~~~~~~~~v~~~l~sL~~kglI~~e~~~~ 40 (150)
-+..+|++...|..++..|+..|+|......-
T Consensus 40 La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G 71 (243)
T 2wv0_A 40 YAEQFGISRMTVRQALSNLVNEGLLYRLKGRG 71 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEECTTSC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEEeCCCe
Confidence 35668999999999999999999998765443
No 248
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=20.46 E-value=35 Score=25.23 Aligned_cols=29 Identities=10% Similarity=-0.136 Sum_probs=25.4
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEe
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQ 36 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e 36 (150)
.-|..+|+++..|.+.++.|+..|+|...
T Consensus 38 eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 38 QLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34556799999999999999999999876
No 249
>3m8e_A Putative DNA-binding protein; winged helix-turn-helix, ARSR family; 2.00A {Bacillus thuringiensis} PDB: 3m9a_A 3m8f_A 4aso_A 4ass_A
Probab=20.28 E-value=2e+02 Score=19.33 Aligned_cols=47 Identities=11% Similarity=0.089 Sum_probs=37.9
Q ss_pred ccccccCCChHHHHHHHHhhccCCceEEeeE-eeeEEEcCHhHHHHHH
Q 031936 8 ASTVSVTVDAQLNESVIKKFGLFVGLPAQDI-KRETRVLTDEGKKYAA 54 (150)
Q Consensus 8 ~~~~~~~~~~~~v~~~l~sL~~kglI~~e~~-~~~~~~LTeEG~~yl~ 54 (150)
|-|+-+++....|...+.+.-..|||.-.+. ..+.|.|++-|-++++
T Consensus 65 avaemiqlskptvfatvnsfycagyidetrvgrskiytlsdlgveive 112 (124)
T 3m8e_A 65 AVAEMIQLSKPTVFATVNSFYCAGYIDETRVGRSKIYTLSDLGVEIVE 112 (124)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEeeeeeeeeecchhhcchheeEehhhcchHHHH
Confidence 4455677888899999999999999987554 4678999999988653
No 250
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.13 E-value=24 Score=25.55 Aligned_cols=29 Identities=7% Similarity=-0.094 Sum_probs=24.5
Q ss_pred cccccccCCChHHHHHHHHhhccCCceEE
Q 031936 7 SASTVSVTVDAQLNESVIKKFGLFVGLPA 35 (150)
Q Consensus 7 ~~~~~~~~~~~~~v~~~l~sL~~kglI~~ 35 (150)
+.-|..+|++...|.+.++.|+..|+|.-
T Consensus 45 ~eLA~~lglS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 45 REISKITGLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 33456689999999999999999999864
Done!