BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031937
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
Length = 151
Score = 160 bits (404), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 86/149 (57%), Positives = 103/149 (69%), Gaps = 11/149 (7%)
Query: 11 RRSSVFDPFSLDVWD---------FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPG 61
RRS+VFDPF+ D+W + S ET+AF N R+DWKETPEAHVFKADLPG
Sbjct: 5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPG 63
Query: 62 XXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKA 121
D VL +SG+R EKED+ND WHRVERSSG F RRFRL E+ +V+++KA
Sbjct: 64 VKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA 123
Query: 122 SMENGVLTVTVPKAEEAKKSNVRAVQISG 150
+ENGVLTVTVPKA E KK V+A+QISG
Sbjct: 124 GLENGVLTVTVPKA-EVKKPEVKAIQISG 151
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
Length = 101
Score = 133 bits (334), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 78/110 (70%), Gaps = 9/110 (8%)
Query: 41 NTRVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERS 100
N R+DWKETPEAHVFKADLPG D VL +SG+R EKED+ND WHRVERS
Sbjct: 1 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERS 60
Query: 101 SGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 150
SG F RRFRL E+ +V+++KA +ENGVLTVTVPKA A+QISG
Sbjct: 61 SGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA---------AIQISG 101
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
Length = 93
Score = 125 bits (314), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 60/93 (64%), Positives = 70/93 (75%)
Query: 42 TRVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSS 101
R+DWKETPEAHVFKADLPG D VL +SG+R EKED+ND WHRVERSS
Sbjct: 1 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSS 60
Query: 102 GAFSRRFRLPENVEVDQIKASMENGVLTVTVPK 134
G F RRFRL E+ +V+++KA +ENGVLTVTVPK
Sbjct: 61 GKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 43 RVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSG 102
RVD KE V ADLPG D +L I G+RK E + + R+ER G
Sbjct: 9 RVDIKEEVNHFVLYADLPGIDPSQIEVQM-DKGILSIRGERKSESSTETERFSRIERRYG 67
Query: 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPK 134
+F RRF LP++ + D I A+ NGVL + +PK
Sbjct: 68 SFHRRFALPDSADADGITAAGRNGVLEIRIPK 99
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 100
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 43 RVDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSG 102
RVD KE V ADLPG D +L I G+RK E + + R+ER G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQM-DKGILSIRGERKSESSTETERFSRIERRYG 64
Query: 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPK 134
+F RRF LP++ + D I A+ NGVL + +PK
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIPK 96
>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
Length = 147
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 106 RRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNV 143
R +LP V+ + A ENGVL+V +PKAE + K +
Sbjct: 107 RTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGI 144
>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
Length = 161
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 106 RRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNV 143
R +LP V+ + A ENGVL+V +PKAE + K +
Sbjct: 121 RTIKLPATVKEENASAKFENGVLSVILPKAESSIKKGI 158
>pdb|4FEI|A Chain A, Hsp17.7 From Deinococcus Radiodurans
Length = 102
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 45 DWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAF 104
DW++ D+PG D L +SG+R + R ER SG F
Sbjct: 10 DWRDAGTHLDLLLDVPGVDAGTLALAE-DGGQLTVSGERP-----GTEHLLRSERPSGRF 63
Query: 105 SRRFRLPENVEVDQIKASMENGVLTV 130
R PE V AS+ GVLTV
Sbjct: 64 VRELAFPEPVRPASGVASLAGGVLTV 89
>pdb|3N3E|A Chain A, Zebrafish Alphaa Crystallin
pdb|3N3E|B Chain B, Zebrafish Alphaa Crystallin
Length = 106
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 104 FSRRFRLPENVEVDQIKASME-NGVLTVTVPKA 135
F RR+RLP NV+ I ++ +G+LT+ PK
Sbjct: 55 FHRRYRLPSNVDQSAITCTLSADGLLTLCGPKT 87
>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound
Length = 106
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 104 FSRRFRLPENVEVDQIKASME-NGVLTVTVPK 134
F RR+RLP NV+ + S+ +G+LT + PK
Sbjct: 57 FHRRYRLPSNVDQSALSCSLSADGMLTFSGPK 88
>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin
Length = 103
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 104 FSRRFRLPENVEVDQIKASME-NGVLTVTVPK 134
F RR+RLP NV+ + S+ +G+LT + PK
Sbjct: 54 FHRRYRLPSNVDQSALSCSLSADGMLTFSGPK 85
>pdb|3AAB|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAB|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAC|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
pdb|3AAC|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
Length = 123
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 44 VDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGA 103
VD E V ADL G L I +R+I + R +
Sbjct: 27 VDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPK----- 81
Query: 104 FSRR-FRLPENVEVD-QIKASMENGVLTVTVPKA 135
+ R+ RLP NV D +I ENGVLT+ +P A
Sbjct: 82 YVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIA 115
>pdb|3VQK|A Chain A, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|B Chain B, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|C Chain C, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|D Chain D, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|E Chain E, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|F Chain F, Small Heat Shock Protein Hsp14.0 Of Wild Type
Length = 123
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 44 VDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGA 103
VD E V ADL G L I +R+I + R +
Sbjct: 27 VDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPK----- 81
Query: 104 FSRR-FRLPENVEVD-QIKASMENGVLTVTVPKA 135
+ R+ RLP NV D +I ENGVLT+ +P A
Sbjct: 82 YVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIA 115
>pdb|3VQL|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQL|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQM|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|C Chain C, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|D Chain D, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|E Chain E, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|F Chain F, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|G Chain G, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|H Chain H, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|I Chain I, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|J Chain J, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|K Chain K, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|L Chain L, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|M Chain M, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|N Chain N, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
Length = 115
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 44 VDWKETPEAHVFKADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGA 103
VD E V ADL G L I +R+I + R +
Sbjct: 27 VDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPK----- 81
Query: 104 FSRR-FRLPENVEVD-QIKASMENGVLTVTVPKA 135
+ R+ RLP NV D +I ENGVLT+ +P A
Sbjct: 82 YVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIA 115
>pdb|1MDX|A Chain A, Crystal Structure Of Arnb Transferase With Pyridoxal 5'
Phosphate
pdb|1MDZ|A Chain A, Crystal Structure Of Arnb Aminotransferase With
Cycloserine And Pyridoxal 5' Phosphate
Length = 393
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 5 PSFFGKRRSSVFDPFSLDVWDFSSSSQFPQ 34
P F K RS F +D WD S + PQ
Sbjct: 203 PQFADKLRSLKFHGLGVDAWDRQSGGRAPQ 232
>pdb|1MDO|A Chain A, Crystal Structure Of Arnb Aminotransferase With Pyridomine
5' Phosphate
Length = 393
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 5 PSFFGKRRSSVFDPFSLDVWDFSSSSQFPQ 34
P F K RS F +D WD S + PQ
Sbjct: 203 PQFADKLRSLKFHGLGVDAWDRQSGGRAPQ 232
>pdb|2FSK|A Chain A, Crystal Structure Of Ta0583, An Archaeal Actin Homolog,
Semet Data
pdb|2FSK|B Chain B, Crystal Structure Of Ta0583, An Archaeal Actin Homolog,
Semet Data
pdb|2FSN|A Chain A, Crystal Structure Of Ta0583, An Archaeal Actin Homolog,
Complex With Adp
pdb|2FSN|B Chain B, Crystal Structure Of Ta0583, An Archaeal Actin Homolog,
Complex With Adp
Length = 346
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 113 NVEVDQIKASMENGVLTVTVPKAE 136
++EV K ++EN VLTVT P+ E
Sbjct: 134 DLEVKAAKEALENKVLTVTGPEGE 157
>pdb|2FSJ|A Chain A, Crystal Structure Of Ta0583, An Archaeal Actin Homolog,
Native Data
Length = 346
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 113 NVEVDQIKASMENGVLTVTVPKAE 136
++EV K ++EN VLTVT P+ E
Sbjct: 134 DLEVKAAKEALENKVLTVTGPEGE 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,876,535
Number of Sequences: 62578
Number of extensions: 133111
Number of successful extensions: 254
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 20
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)