Query 031937
Match_columns 150
No_of_seqs 251 out of 1107
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:24:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 3.3E-30 7.2E-35 182.8 12.7 105 39-149 30-135 (142)
2 PRK10743 heat shock protein Ib 100.0 1.4E-29 3E-34 179.0 13.1 102 42-149 35-137 (137)
3 COG0071 IbpA Molecular chapero 100.0 7.1E-29 1.5E-33 177.5 14.3 109 39-149 38-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 100.0 5.9E-28 1.3E-32 160.2 11.8 92 43-134 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 1.4E-25 3E-30 151.0 13.7 102 45-149 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 1.1E-25 2.3E-30 149.5 11.5 91 42-134 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 6.8E-25 1.5E-29 145.0 12.7 89 42-134 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 1.9E-23 4.2E-28 136.9 11.0 82 45-134 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 9.9E-23 2.2E-27 132.7 10.9 82 45-134 1-83 (83)
10 cd06479 ACD_HspB7_like Alpha c 99.9 4.9E-23 1.1E-27 133.4 9.3 79 45-134 2-81 (81)
11 cd06498 ACD_alphaB-crystallin_ 99.9 1.2E-22 2.6E-27 132.6 10.8 82 46-135 2-84 (84)
12 cd06475 ACD_HspB1_like Alpha c 99.9 4.3E-22 9.3E-27 130.5 10.5 82 44-133 3-85 (86)
13 cd06481 ACD_HspB9_like Alpha c 99.9 5E-22 1.1E-26 130.5 10.5 83 48-134 4-87 (87)
14 cd06476 ACD_HspB2_like Alpha c 99.9 7.6E-22 1.7E-26 128.4 10.6 81 46-134 2-83 (83)
15 cd06464 ACD_sHsps-like Alpha-c 99.9 1.7E-21 3.6E-26 126.9 11.2 88 45-134 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.9 2.5E-21 5.3E-26 126.9 10.3 80 49-133 6-86 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.9 1E-20 2.3E-25 122.9 10.5 79 47-133 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.9 5.3E-21 1.1E-25 124.5 9.1 77 50-134 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 1.5E-19 3.2E-24 135.0 9.2 115 35-150 78-196 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.8 6.3E-18 1.4E-22 111.5 9.5 81 46-134 10-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 2.5E-16 5.5E-21 115.2 11.2 100 41-149 62-162 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 1.1E-14 2.3E-19 91.8 9.7 80 46-134 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.4 4.9E-12 1.1E-16 80.8 8.8 70 46-136 1-70 (78)
24 PF05455 GvpH: GvpH; InterPro 99.2 4.2E-10 9E-15 82.0 10.3 79 38-136 88-169 (177)
25 cd06463 p23_like Proteins cont 99.1 1.5E-09 3.2E-14 69.3 9.0 75 46-136 1-75 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.9 1.5E-08 3.3E-13 65.3 7.6 76 45-136 1-76 (84)
27 PF04969 CS: CS domain; Inter 98.7 5.6E-07 1.2E-11 56.7 11.1 77 42-134 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.4 4.2E-06 9.1E-11 56.7 9.9 78 42-136 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.2 6.9E-06 1.5E-10 65.5 8.7 65 50-133 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.2 1.6E-05 3.4E-10 51.3 8.1 76 45-136 1-76 (84)
31 cd06488 p23_melusin_like p23_l 98.1 8.9E-05 1.9E-09 48.3 9.6 78 43-136 2-79 (87)
32 cd06468 p23_CacyBP p23_like do 98.0 0.00012 2.5E-09 47.9 9.9 78 43-136 3-84 (92)
33 cd06467 p23_NUDC_like p23_like 98.0 0.00012 2.5E-09 47.1 8.9 74 44-136 1-76 (85)
34 cd06493 p23_NUDCD1_like p23_NU 97.9 0.00023 4.9E-09 46.1 9.1 74 44-136 1-76 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.6 0.00098 2.1E-08 44.1 9.2 77 40-136 4-82 (93)
36 cd00237 p23 p23 binds heat sho 97.6 0.0018 3.9E-08 43.8 10.3 78 41-136 1-78 (106)
37 KOG1309 Suppressor of G2 allel 97.3 0.0014 3E-08 48.2 6.8 80 41-136 3-82 (196)
38 PLN03088 SGT1, suppressor of 97.2 0.003 6.5E-08 51.3 8.6 80 41-136 156-235 (356)
39 cd06490 p23_NCB5OR p23_like do 96.7 0.037 7.9E-07 35.9 9.6 75 44-136 1-79 (87)
40 cd06492 p23_mNUDC_like p23-lik 96.4 0.042 9.1E-07 35.7 8.1 73 45-136 2-78 (87)
41 cd06495 p23_NUDCD3_like p23-li 96.2 0.11 2.5E-06 34.8 9.7 80 41-136 4-86 (102)
42 KOG2265 Nuclear distribution p 88.5 5.8 0.00013 29.2 8.4 80 38-136 15-96 (179)
43 PF14913 DPCD: DPCD protein fa 87.8 8 0.00017 28.9 8.8 80 38-136 83-170 (194)
44 KOG3158 HSP90 co-chaperone p23 84.4 5.2 0.00011 29.4 6.4 81 38-136 4-84 (180)
45 cd06482 ACD_HspB10 Alpha cryst 83.6 2.7 5.9E-05 27.2 4.3 33 103-136 9-41 (87)
46 KOG1667 Zn2+-binding protein M 81.7 9.5 0.00021 29.9 7.2 83 39-136 212-294 (320)
47 cd06470 ACD_IbpA-B_like Alpha- 80.5 6.3 0.00014 25.3 5.2 33 103-136 12-44 (90)
48 cd06477 ACD_HspB3_Like Alpha c 79.9 4.5 9.8E-05 25.9 4.3 33 103-136 8-40 (83)
49 cd06476 ACD_HspB2_like Alpha c 79.6 4.4 9.6E-05 25.9 4.2 33 103-136 8-40 (83)
50 cd06478 ACD_HspB4-5-6 Alpha-cr 78.2 6.2 0.00013 25.1 4.5 33 103-136 8-40 (83)
51 cd06497 ACD_alphaA-crystallin_ 78.1 5.5 0.00012 25.5 4.3 33 103-136 11-43 (86)
52 PF08308 PEGA: PEGA domain; I 78.1 10 0.00022 23.0 5.3 42 43-84 26-68 (71)
53 PF13349 DUF4097: Domain of un 77.7 21 0.00046 24.9 9.4 83 42-132 66-148 (166)
54 PRK10743 heat shock protein Ib 77.0 9.6 0.00021 26.8 5.6 32 104-136 47-78 (137)
55 cd06479 ACD_HspB7_like Alpha c 76.4 6.5 0.00014 25.0 4.2 33 103-136 9-41 (81)
56 cd06471 ACD_LpsHSP_like Group 75.8 6.8 0.00015 25.1 4.3 33 103-136 11-43 (93)
57 cd06526 metazoan_ACD Alpha-cry 75.2 6.8 0.00015 24.7 4.1 33 103-136 8-40 (83)
58 COG5091 SGT1 Suppressor of G2 74.3 1.9 4.2E-05 34.2 1.5 82 40-136 175-256 (368)
59 PRK11597 heat shock chaperone 72.5 14 0.0003 26.2 5.5 32 104-136 45-76 (142)
60 cd06481 ACD_HspB9_like Alpha c 72.2 12 0.00025 24.1 4.7 33 103-136 8-40 (87)
61 cd06498 ACD_alphaB-crystallin_ 71.8 8.3 0.00018 24.6 3.9 33 103-136 8-40 (84)
62 PF12992 DUF3876: Domain of un 71.8 26 0.00056 23.1 7.1 40 40-80 24-68 (95)
63 cd06475 ACD_HspB1_like Alpha c 70.0 13 0.00027 23.8 4.5 33 103-136 11-43 (86)
64 cd06472 ACD_ScHsp26_like Alpha 69.6 15 0.00033 23.5 4.9 33 103-136 10-43 (92)
65 PF00011 HSP20: Hsp20/alpha cr 66.9 17 0.00037 23.4 4.7 32 103-135 8-39 (102)
66 PF01954 DUF104: Protein of un 66.8 5.9 0.00013 23.9 2.2 15 117-131 3-17 (60)
67 cd06480 ACD_HspB8_like Alpha-c 64.4 18 0.0004 23.6 4.4 31 51-81 58-89 (91)
68 cd06464 ACD_sHsps-like Alpha-c 64.2 17 0.00038 22.3 4.2 33 103-136 8-40 (88)
69 PRK05518 rpl6p 50S ribosomal p 61.0 52 0.0011 24.3 6.8 46 63-133 12-57 (180)
70 COG0071 IbpA Molecular chapero 59.1 27 0.00058 24.5 4.8 32 104-136 52-83 (146)
71 PF04972 BON: BON domain; Int 58.9 23 0.00049 20.7 3.9 26 60-86 12-37 (64)
72 TIGR03653 arch_L6P archaeal ri 56.7 75 0.0016 23.2 7.1 45 64-133 7-51 (170)
73 TIGR03654 L6_bact ribosomal pr 56.0 71 0.0015 23.3 6.8 44 64-133 11-54 (175)
74 PRK05498 rplF 50S ribosomal pr 53.7 75 0.0016 23.3 6.6 44 64-133 12-55 (178)
75 PF14814 UB2H: Bifunctional tr 53.7 52 0.0011 20.9 5.1 44 89-132 28-73 (85)
76 PTZ00027 60S ribosomal protein 50.8 76 0.0017 23.6 6.3 48 63-133 12-59 (190)
77 cd06467 p23_NUDC_like p23_like 49.8 39 0.00084 20.9 4.0 30 104-133 10-39 (85)
78 PF03368 Dicer_dimer: Dicer di 46.4 26 0.00055 22.6 2.8 34 29-62 9-42 (90)
79 KOG3260 Calcyclin-binding prot 45.7 92 0.002 23.3 5.8 77 44-136 77-154 (224)
80 CHL00140 rpl6 ribosomal protei 44.6 97 0.0021 22.7 5.9 44 64-133 12-55 (178)
81 PRK10568 periplasmic protein; 43.0 50 0.0011 24.7 4.3 25 60-85 73-97 (203)
82 PF14869 DUF4488: Domain of un 42.0 1.2E+02 0.0026 21.3 9.4 74 41-134 26-101 (133)
83 KOG3591 Alpha crystallins [Pos 40.2 81 0.0017 23.1 4.9 31 56-86 120-151 (173)
84 cd00503 Frataxin Frataxin is a 39.6 32 0.0007 23.0 2.5 18 117-134 28-45 (105)
85 PF01491 Frataxin_Cyay: Fratax 39.2 40 0.00087 22.6 3.0 19 117-135 30-48 (109)
86 PTZ00179 60S ribosomal protein 39.1 1.4E+02 0.003 22.2 6.1 47 64-133 12-58 (189)
87 cd02178 GH16_beta_agarase Beta 38.5 1.5E+02 0.0032 22.7 6.5 44 69-113 60-110 (258)
88 KOG3413 Mitochondrial matrix p 38.2 16 0.00034 26.2 0.9 21 113-133 68-88 (156)
89 PRK00446 cyaY frataxin-like pr 38.0 35 0.00077 22.9 2.5 17 119-135 29-45 (105)
90 PRK14282 chaperone protein Dna 37.1 1.7E+02 0.0037 23.9 6.9 23 114-136 290-313 (369)
91 TIGR03421 FeS_CyaY iron donor 36.8 33 0.00072 22.8 2.2 17 118-134 26-42 (102)
92 PF03983 SHD1: SLA1 homology d 32.5 45 0.00098 20.8 2.2 35 45-79 14-48 (70)
93 cd02175 GH16_lichenase lichena 32.4 1.6E+02 0.0034 21.8 5.5 47 64-113 31-80 (212)
94 PF00347 Ribosomal_L6: Ribosom 32.3 1.2E+02 0.0026 18.3 4.6 46 64-133 2-47 (77)
95 PRK14284 chaperone protein Dna 32.1 2.2E+02 0.0048 23.4 6.8 72 65-136 227-316 (391)
96 PRK11198 LysM domain/BON super 31.9 75 0.0016 22.4 3.6 26 60-86 38-63 (147)
97 cd06494 p23_NUDCD2_like p23-li 31.8 1.5E+02 0.0032 19.3 5.5 30 103-132 16-45 (93)
98 PF13014 KH_3: KH domain 31.2 60 0.0013 17.5 2.4 21 129-150 23-43 (43)
99 PF14545 DBB: Dof, BCAP, and B 30.0 1.9E+02 0.004 20.6 5.2 28 50-77 48-78 (142)
100 TIGR00251 conserved hypothetic 28.9 1.2E+02 0.0025 19.6 3.8 36 46-82 1-38 (87)
101 TIGR03422 mito_frataxin fratax 28.9 39 0.00084 22.3 1.5 16 120-135 30-45 (97)
102 PF12624 Chorein_N: N-terminal 28.6 55 0.0012 22.0 2.3 22 60-82 18-39 (118)
103 KOG3247 Uncharacterized conser 28.3 33 0.00072 28.8 1.3 76 40-136 2-80 (466)
104 PRK14297 chaperone protein Dna 27.9 3.4E+02 0.0074 22.2 7.3 25 112-136 284-308 (380)
105 PF13620 CarboxypepD_reg: Carb 27.8 90 0.0019 18.8 3.1 29 51-79 48-77 (82)
106 PF05455 GvpH: GvpH; InterPro 27.1 2.6E+02 0.0057 20.7 6.2 38 49-87 134-171 (177)
107 PF08845 SymE_toxin: Toxin Sym 26.4 1E+02 0.0023 18.2 3.0 22 58-80 34-56 (57)
108 PF14730 DUF4468: Domain of un 26.3 1.8E+02 0.0039 18.5 5.9 17 118-134 69-85 (91)
109 PRK13726 conjugal transfer pil 25.6 1.6E+02 0.0035 21.8 4.5 20 117-136 164-183 (188)
110 COG4004 Uncharacterized protei 25.4 2E+02 0.0043 19.0 4.3 33 44-81 26-58 (96)
111 COG2880 Uncharacterized protei 24.9 6.6 0.00014 24.3 -2.5 13 118-130 6-18 (67)
112 PRK14291 chaperone protein Dna 24.7 2.6E+02 0.0057 22.9 6.0 72 65-136 224-312 (382)
113 PF14014 DUF4230: Protein of u 24.7 43 0.00094 23.4 1.3 26 111-136 49-79 (157)
114 PF07873 YabP: YabP family; I 23.7 66 0.0014 19.4 1.8 22 62-84 23-44 (66)
115 PRK14281 chaperone protein Dna 23.1 4E+02 0.0087 22.0 6.8 71 66-136 236-322 (397)
116 cd02177 GH16_kappa_carrageenas 23.0 3.8E+02 0.0081 21.0 6.8 44 68-112 45-103 (269)
117 PF09985 DUF2223: Domain of un 22.9 3.4E+02 0.0074 20.7 6.0 96 39-136 31-143 (228)
118 PF07076 DUF1344: Protein of u 22.6 99 0.0021 18.7 2.3 14 107-120 26-39 (61)
119 cd08023 GH16_laminarinase_like 22.1 3.4E+02 0.0073 20.2 7.5 50 61-113 34-91 (235)
120 TIGR02934 nifT_nitrog probable 21.7 84 0.0018 19.4 1.9 13 124-136 9-21 (67)
121 cd00413 Glyco_hydrolase_16 gly 21.3 2.9E+02 0.0064 19.9 5.3 16 98-113 64-79 (210)
122 PF03681 UPF0150: Uncharacteri 21.1 1.3E+02 0.0029 16.4 2.7 18 45-62 5-24 (48)
123 PF02736 Myosin_N: Myosin N-te 20.5 1.1E+02 0.0025 16.6 2.2 20 61-80 20-39 (42)
124 cd02182 GH16_Strep_laminarinas 20.5 2.3E+02 0.0049 21.7 4.7 18 64-84 45-63 (259)
125 cd02180 GH16_fungal_KRE6_gluca 20.1 1.5E+02 0.0033 23.6 3.6 47 63-112 39-90 (295)
126 PRK04517 hypothetical protein; 20.1 3.9E+02 0.0084 20.1 7.2 20 117-136 83-104 (216)
127 PF05309 TraE: TraE protein; 20.0 2.3E+02 0.0051 20.6 4.4 20 64-84 130-149 (187)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.97 E-value=3.3e-30 Score=182.83 Aligned_cols=105 Identities=21% Similarity=0.357 Sum_probs=92.4
Q ss_pred cccceeEEEE-cCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccC
Q 031937 39 FVNTRVDWKE-TPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVD 117 (150)
Q Consensus 39 ~~~p~~dv~e-~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~ 117 (150)
...|++||+| ++++|+|.++|||++++||+|.+++ +.|+|+|++.. ++++.+|+++|+.+|+|+|+|.||.+||.+
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~--~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~ 106 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQ--PEKEVKWLHQGLVNQPFSLSFTLAENMEVS 106 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEcc--ccCCCcEEEEEEeCcEEEEEEECCCCcccC
Confidence 3459999998 4779999999999999999999996 69999999764 345678999999999999999999999998
Q ss_pred CeeEEEeCCEEEEEEeCcCcccCCCceEEecC
Q 031937 118 QIKASMENGVLTVTVPKAEEAKKSNVRAVQIS 149 (150)
Q Consensus 118 ~i~A~~~~GvL~I~lpK~~~~~~~~~~~I~I~ 149 (150)
+|+|+||||+|+|||.. ++..+.++|+|+
T Consensus 107 --~A~~~nGVL~I~lPK~~-~~~~~~rkI~I~ 135 (142)
T PRK11597 107 --GATFVNGLLHIDLIRNE-PEAIAPQRIAIS 135 (142)
T ss_pred --cCEEcCCEEEEEEeccC-ccccCCcEEEEC
Confidence 79999999999999985 445556899986
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.97 E-value=1.4e-29 Score=179.04 Aligned_cols=102 Identities=20% Similarity=0.363 Sum_probs=91.2
Q ss_pred ceeEEEE-cCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCee
Q 031937 42 TRVDWKE-TPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIK 120 (150)
Q Consensus 42 p~~dv~e-~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~ 120 (150)
|++||++ ++++|+|.++|||++++||+|++++ +.|+|+|++... .++.+|+++|+.+|+|+|+|.||.+||.+ +
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~ 109 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADE--QKERTYLYQGIAERNFERKFQLAENIHVR--G 109 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECcc--ccCCcEEEEEEECCEEEEEEECCCCcccC--c
Confidence 8999995 8999999999999999999999997 599999997653 35678999999999999999999999998 5
Q ss_pred EEEeCCEEEEEEeCcCcccCCCceEEecC
Q 031937 121 ASMENGVLTVTVPKAEEAKKSNVRAVQIS 149 (150)
Q Consensus 121 A~~~~GvL~I~lpK~~~~~~~~~~~I~I~ 149 (150)
|+|+||||+|++||.+ ++....++|+|+
T Consensus 110 A~~~dGVL~I~lPK~~-~~~~~~r~I~I~ 137 (137)
T PRK10743 110 ANLVNGLLYIDLERVI-PEAKKPRRIEIN 137 (137)
T ss_pred CEEeCCEEEEEEeCCC-ccccCCeEEeeC
Confidence 9999999999999975 455566999985
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.1e-29 Score=177.53 Aligned_cols=109 Identities=41% Similarity=0.680 Sum_probs=100.6
Q ss_pred cccceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCC
Q 031937 39 FVNTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQ 118 (150)
Q Consensus 39 ~~~p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~ 118 (150)
.+.|++||++++++|.|.++|||++++||+|++++ +.|+|+|++..+...+...++++|+.+|.|+|+|.||..|+.+.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 57899999999999999999999999999999997 69999999988666778899999999999999999999999999
Q ss_pred eeEEEeCCEEEEEEeCcCcccCCCceEEecC
Q 031937 119 IKASMENGVLTVTVPKAEEAKKSNVRAVQIS 149 (150)
Q Consensus 119 i~A~~~~GvL~I~lpK~~~~~~~~~~~I~I~ 149 (150)
++|+|+||+|+|+|||.+ ++..+.++|+|+
T Consensus 117 ~~A~~~nGvL~I~lpk~~-~~~~~~~~i~I~ 146 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAE-PEEKKPKRIEIE 146 (146)
T ss_pred eeeEeeCcEEEEEEeccc-cccccCceeecC
Confidence 999999999999999998 555566888874
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.96 E-value=5.9e-28 Score=160.17 Aligned_cols=92 Identities=78% Similarity=1.230 Sum_probs=86.0
Q ss_pred eeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEE
Q 031937 43 RVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKAS 122 (150)
Q Consensus 43 ~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~ 122 (150)
++||+|++++|+|.++|||++++||+|++++++.|+|+|++.......+..++++|+.+|.|.|+|.||.+|+.++|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47999999999999999999999999999865689999998766666678999999999999999999999999999999
Q ss_pred EeCCEEEEEEeC
Q 031937 123 MENGVLTVTVPK 134 (150)
Q Consensus 123 ~~~GvL~I~lpK 134 (150)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.94 E-value=1.4e-25 Score=151.01 Aligned_cols=102 Identities=49% Similarity=0.810 Sum_probs=84.2
Q ss_pred EEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEe
Q 031937 45 DWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASME 124 (150)
Q Consensus 45 dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~ 124 (150)
||.+++++|.|.++|||+.+++|+|++.+ +.|+|+|++. ....+..++..++.++.|.|+|.||.++|.++|+|+|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~--~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~ 77 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRK--EEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE 77 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEE--GEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-Cccceeceee--eeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec
Confidence 79999999999999999999999999997 5899999998 34456778888999999999999999999999999999
Q ss_pred CCEEEEEEeCcCcccCCCceEEecC
Q 031937 125 NGVLTVTVPKAEEAKKSNVRAVQIS 149 (150)
Q Consensus 125 ~GvL~I~lpK~~~~~~~~~~~I~I~ 149 (150)
||+|+|++||.........++|+|+
T Consensus 78 ~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 78 NGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp TSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred CCEEEEEEEccccccCCCCeEEEeC
Confidence 9999999999984434467999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.93 E-value=1.1e-25 Score=149.48 Aligned_cols=91 Identities=47% Similarity=0.764 Sum_probs=82.5
Q ss_pred ceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeecc--CCCceEEEEeeeeeeEEEEEECCCCcccCCe
Q 031937 42 TRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKE--DRNDTWHRVERSSGAFSRRFRLPENVEVDQI 119 (150)
Q Consensus 42 p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~--~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i 119 (150)
|++||+|+++.|+|.++|||+++++|+|.+.+ +.|+|+|++....+ ..+.+++++|+.+|+|+|+|.|| +++.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 46999999999999999999999999999996 69999999876433 23457999999999999999999 7999999
Q ss_pred eEEEeCCEEEEEEeC
Q 031937 120 KASMENGVLTVTVPK 134 (150)
Q Consensus 120 ~A~~~~GvL~I~lpK 134 (150)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.93 E-value=6.8e-25 Score=144.99 Aligned_cols=89 Identities=24% Similarity=0.459 Sum_probs=81.8
Q ss_pred ceeEEEEcC-CeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCee
Q 031937 42 TRVDWKETP-EAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIK 120 (150)
Q Consensus 42 p~~dv~e~~-~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~ 120 (150)
|++||++++ +.|+|.++|||+++++|+|++.+ +.|+|+|++..... ++.+|+++|+.+|+|.|+|.||.+++.. +
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 789999975 99999999999999999999996 59999999987655 6778999999999999999999999875 9
Q ss_pred EEEeCCEEEEEEeC
Q 031937 121 ASMENGVLTVTVPK 134 (150)
Q Consensus 121 A~~~~GvL~I~lpK 134 (150)
|+|+||+|+|+||+
T Consensus 77 A~~~~GvL~I~l~~ 90 (90)
T cd06470 77 AELENGLLTIDLER 90 (90)
T ss_pred eEEeCCEEEEEEEC
Confidence 99999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.91 E-value=1.9e-23 Score=136.89 Aligned_cols=82 Identities=27% Similarity=0.493 Sum_probs=72.6
Q ss_pred EEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEE-
Q 031937 45 DWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASM- 123 (150)
Q Consensus 45 dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~- 123 (150)
+|.+++++|.|.++|||+++++|+|++.+ +.|+|+|++.... ++..|.++ .|+|+|.||.+||.++|+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----ef~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQ--DDHGYISR-----EFHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEE-----EEEEEEECCCCCChHHeEEEeC
Confidence 79999999999999999999999999997 5999999875432 33456554 499999999999999999999
Q ss_pred eCCEEEEEEeC
Q 031937 124 ENGVLTVTVPK 134 (150)
Q Consensus 124 ~~GvL~I~lpK 134 (150)
+||+|+|++||
T Consensus 76 ~dGvL~I~~PK 86 (86)
T cd06497 76 ADGMLTFSGPK 86 (86)
T ss_pred CCCEEEEEecC
Confidence 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.89 E-value=9.9e-23 Score=132.70 Aligned_cols=82 Identities=26% Similarity=0.471 Sum_probs=71.3
Q ss_pred EEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEE-
Q 031937 45 DWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASM- 123 (150)
Q Consensus 45 dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~- 123 (150)
+|.+++++|.|.++||||+++||+|++.+ +.|+|+|++.... .+..|+++ .|.|+|.||.+||.++|+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----ef~R~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQ--DEHGFISR-----EFHRRYRLPPGVDPAAITSSLS 72 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEc--CCCCEEEE-----EEEEEEECCCCcChHHeEEEEC
Confidence 36789999999999999999999999997 5999999875432 23445554 499999999999999999999
Q ss_pred eCCEEEEEEeC
Q 031937 124 ENGVLTVTVPK 134 (150)
Q Consensus 124 ~~GvL~I~lpK 134 (150)
+||+|+|++||
T Consensus 73 ~dGvL~I~~PK 83 (83)
T cd06478 73 ADGVLTISGPR 83 (83)
T ss_pred CCCEEEEEecC
Confidence 69999999998
No 10
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.89 E-value=4.9e-23 Score=133.36 Aligned_cols=79 Identities=19% Similarity=0.423 Sum_probs=71.2
Q ss_pred EEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEE-
Q 031937 45 DWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASM- 123 (150)
Q Consensus 45 dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~- 123 (150)
+|.|++++|.|.++|||++++||+|++.+ +.|+|+|+++... +..+|+|.|+|.||.+||+++|+|+|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~----------~~~~g~F~R~~~LP~~vd~e~v~A~l~ 70 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASD----------GTVMNTFTHKCQLPEDVDPTSVSSSLG 70 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccC----------CCEEEEEEEEEECCCCcCHHHeEEEec
Confidence 68899999999999999999999999997 6999999985322 12478999999999999999999997
Q ss_pred eCCEEEEEEeC
Q 031937 124 ENGVLTVTVPK 134 (150)
Q Consensus 124 ~~GvL~I~lpK 134 (150)
+||+|+|++++
T Consensus 71 ~~GvL~I~~~~ 81 (81)
T cd06479 71 EDGTLTIKARR 81 (81)
T ss_pred CCCEEEEEecC
Confidence 99999999985
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.89 E-value=1.2e-22 Score=132.58 Aligned_cols=82 Identities=26% Similarity=0.460 Sum_probs=71.0
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEe-
Q 031937 46 WKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASME- 124 (150)
Q Consensus 46 v~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~- 124 (150)
+.+++++|.|.++||||+++||+|++.+ +.|+|+|++.... ++..|+++ .|.|+|.||.+||.++|+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~~~ 73 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQ--DEHGFISR-----EFQRKYRIPADVDPLTITSSLSP 73 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEE-----EEEEEEECCCCCChHHcEEEeCC
Confidence 5678999999999999999999999996 6999999875433 23445543 6999999999999999999995
Q ss_pred CCEEEEEEeCc
Q 031937 125 NGVLTVTVPKA 135 (150)
Q Consensus 125 ~GvL~I~lpK~ 135 (150)
||+|+|++||+
T Consensus 74 dGvL~I~lPk~ 84 (84)
T cd06498 74 DGVLTVCGPRK 84 (84)
T ss_pred CCEEEEEEeCC
Confidence 99999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.88 E-value=4.3e-22 Score=130.49 Aligned_cols=82 Identities=26% Similarity=0.515 Sum_probs=71.5
Q ss_pred eEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEE
Q 031937 44 VDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASM 123 (150)
Q Consensus 44 ~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~ 123 (150)
.+|+|++++|.|.++|||+++++|+|++.+ +.|+|+|++.... ....+. .++|+|+|.||.+||.++|+|+|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQ--DEHGFV-----SRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCc--CCCCEE-----EEEEEEEEECCCCCCHHHcEEEE
Confidence 589999999999999999999999999996 5999999986432 222332 35899999999999999999999
Q ss_pred e-CCEEEEEEe
Q 031937 124 E-NGVLTVTVP 133 (150)
Q Consensus 124 ~-~GvL~I~lp 133 (150)
. ||+|+|++|
T Consensus 75 ~~dGvL~I~lP 85 (86)
T cd06475 75 SPDGILTVEAP 85 (86)
T ss_pred CCCCeEEEEec
Confidence 6 999999998
No 13
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.88 E-value=5e-22 Score=130.46 Aligned_cols=83 Identities=28% Similarity=0.548 Sum_probs=72.5
Q ss_pred EcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEE-eCC
Q 031937 48 ETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASM-ENG 126 (150)
Q Consensus 48 e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~-~~G 126 (150)
+..+.|.|.++||||+++||+|++.+ +.|+|+|++..........|. +.+|+|.|+|.||.+||.+.|+|+| +||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG 79 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSG 79 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence 45689999999999999999999996 699999998765544445554 3478999999999999999999999 999
Q ss_pred EEEEEEeC
Q 031937 127 VLTVTVPK 134 (150)
Q Consensus 127 vL~I~lpK 134 (150)
+|+|++|+
T Consensus 80 vL~I~~P~ 87 (87)
T cd06481 80 HLHIRAPR 87 (87)
T ss_pred eEEEEcCC
Confidence 99999995
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.88 E-value=7.6e-22 Score=128.42 Aligned_cols=81 Identities=21% Similarity=0.383 Sum_probs=68.9
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEe-
Q 031937 46 WKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASME- 124 (150)
Q Consensus 46 v~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~- 124 (150)
+..++++|.|.++||||+++||+|++.+ +.|+|+|++.... ....+. .+.|+|+|.||.+||.++|+|+|.
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~-----~~eF~R~~~LP~~vd~~~v~A~~~~ 73 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRM--DRHGFV-----SREFTRTYILPMDVDPLLVRASLSH 73 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccee--cCCCEE-----EEEEEEEEECCCCCChhhEEEEecC
Confidence 4557899999999999999999999997 5999999975432 223343 346999999999999999999995
Q ss_pred CCEEEEEEeC
Q 031937 125 NGVLTVTVPK 134 (150)
Q Consensus 125 ~GvL~I~lpK 134 (150)
||+|+|++||
T Consensus 74 dGvL~I~~Pr 83 (83)
T cd06476 74 DGILCIQAPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999997
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=1.7e-21 Score=126.94 Aligned_cols=88 Identities=63% Similarity=0.925 Sum_probs=80.5
Q ss_pred EEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEe
Q 031937 45 DWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASME 124 (150)
Q Consensus 45 dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~ 124 (150)
++.|++++|+|.++|||+++++|+|++.+ +.|.|+|++........ .+...++.++.|.|++.||..+|.+.++|.|+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 47889999999999999999999999997 69999999986654433 77888999999999999999999999999999
Q ss_pred CCEEEEEEeC
Q 031937 125 NGVLTVTVPK 134 (150)
Q Consensus 125 ~GvL~I~lpK 134 (150)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.86 E-value=2.5e-21 Score=126.89 Aligned_cols=80 Identities=24% Similarity=0.359 Sum_probs=69.5
Q ss_pred cCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeCC-E
Q 031937 49 TPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENG-V 127 (150)
Q Consensus 49 ~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~G-v 127 (150)
+++.|+|.++|||++++||+|++.+ +.|+|+|++....+..+ ..|+.+|+|.|+|.||.+||.++|+|+|+|| +
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~ 80 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence 4789999999999999999999997 59999999876543222 2378899999999999999999999999766 9
Q ss_pred EEEEEe
Q 031937 128 LTVTVP 133 (150)
Q Consensus 128 L~I~lp 133 (150)
|+|..|
T Consensus 81 l~i~~~ 86 (87)
T cd06482 81 VKIETP 86 (87)
T ss_pred EEEeeC
Confidence 999887
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.85 E-value=1e-20 Score=122.94 Aligned_cols=79 Identities=24% Similarity=0.451 Sum_probs=67.9
Q ss_pred EEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEE-eC
Q 031937 47 KETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASM-EN 125 (150)
Q Consensus 47 ~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~-~~ 125 (150)
.|++++|.|.++|||++++||+|++.+ +.|+|+|++..... ...+. .++|+|+|.||.+|+.++|+|+| +|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~--~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~~~d 74 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMD--EHGFI-----SRSFTRQYQLPDGVEHKDLSAMLCHD 74 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccC--CCCEE-----EEEEEEEEECCCCcchheEEEEEcCC
Confidence 467899999999999999999999997 59999999866432 23332 33899999999999999999998 89
Q ss_pred CEEEEEEe
Q 031937 126 GVLTVTVP 133 (150)
Q Consensus 126 GvL~I~lp 133 (150)
|+|+|+.+
T Consensus 75 GvL~I~~~ 82 (83)
T cd06477 75 GILVVETK 82 (83)
T ss_pred CEEEEEec
Confidence 99999976
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.85 E-value=5.3e-21 Score=124.50 Aligned_cols=77 Identities=36% Similarity=0.629 Sum_probs=67.5
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeC-CEE
Q 031937 50 PEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMEN-GVL 128 (150)
Q Consensus 50 ~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~-GvL 128 (150)
+++|.|.++||||+++||+|++.+ +.|+|+|++..... .. ++.+++|.|+|.||.+||.++++|+|.| |+|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL 77 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEERED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSSDGVL 77 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCCCcEE
Confidence 369999999999999999999996 69999999876432 11 2346799999999999999999999988 999
Q ss_pred EEEEeC
Q 031937 129 TVTVPK 134 (150)
Q Consensus 129 ~I~lpK 134 (150)
+|++||
T Consensus 78 ~I~~Pk 83 (83)
T cd06526 78 TIEAPK 83 (83)
T ss_pred EEEecC
Confidence 999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.5e-19 Score=135.00 Aligned_cols=115 Identities=61% Similarity=0.947 Sum_probs=102.8
Q ss_pred CCcCcccceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccC--CCceEEEEeeeeeeEEEEEECCC
Q 031937 35 ETSAFVNTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKED--RNDTWHRVERSSGAFSRRFRLPE 112 (150)
Q Consensus 35 ~~~~~~~p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~--~~~~~~~~e~~~g~f~r~i~LP~ 112 (150)
.....+.++.+|.+..+.|.+.+++||+.+++++|.++++++|+|+|++..+.+. ....++..|+.+|.|.|.+.||+
T Consensus 78 ~~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPe 157 (196)
T KOG0710|consen 78 EAKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPE 157 (196)
T ss_pred cccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCc
Confidence 3455667888999999999999999999999999999987689999999877654 56788899999999999999999
Q ss_pred CcccCCeeEEEeCCEEEEEEeCcCcc--cCCCceEEecCC
Q 031937 113 NVEVDQIKASMENGVLTVTVPKAEEA--KKSNVRAVQISG 150 (150)
Q Consensus 113 ~vd~~~i~A~~~~GvL~I~lpK~~~~--~~~~~~~I~I~~ 150 (150)
.++.+.|+|.|+||+|+|++||.. + .++..+.|+|.|
T Consensus 158 nv~~d~ikA~~~nGVL~VvvpK~~-~~~~~~~v~~i~i~~ 196 (196)
T KOG0710|consen 158 NVDVDEIKAEMENGVLTVVVPKLE-PLLKKPKVRQIAISG 196 (196)
T ss_pred cccHHHHHHHhhCCeEEEEEeccc-ccccCCccceeeccC
Confidence 999999999999999999999998 5 567778888875
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.76 E-value=6.3e-18 Score=111.50 Aligned_cols=81 Identities=22% Similarity=0.421 Sum_probs=69.6
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEe-
Q 031937 46 WKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASME- 124 (150)
Q Consensus 46 v~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~- 124 (150)
+..++++|.|.+++.||+++||+|++.+ +.|+|+|++.....+ ..+. .++|.|+|.||.+||.+.|+|++.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e--~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l~~ 81 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKE--GGIV-----SKNFTKKIQLPPEVDPVTVFASLSP 81 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCC--CCEE-----EEEEEEEEECCCCCCchhEEEEeCC
Confidence 4567889999999999999999999996 699999998765422 2232 468999999999999999999996
Q ss_pred CCEEEEEEeC
Q 031937 125 NGVLTVTVPK 134 (150)
Q Consensus 125 ~GvL~I~lpK 134 (150)
||+|+|.+|.
T Consensus 82 dGvL~IeaP~ 91 (91)
T cd06480 82 EGLLIIEAPQ 91 (91)
T ss_pred CCeEEEEcCC
Confidence 9999999983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.5e-16 Score=115.24 Aligned_cols=100 Identities=26% Similarity=0.507 Sum_probs=84.3
Q ss_pred cceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCee
Q 031937 41 NTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIK 120 (150)
Q Consensus 41 ~p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~ 120 (150)
....++..++++|.|.+|+..|.+++|.|++.+ +.|.|+|++.... ++..+. .++|.|+|.||.+||++.|+
T Consensus 62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~--d~~G~v-----~R~F~R~y~LP~~vdp~~V~ 133 (173)
T KOG3591|consen 62 SGASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKE--DEHGYV-----SRSFVRKYLLPEDVDPTSVT 133 (173)
T ss_pred ccccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecccc--CCCCeE-----EEEEEEEecCCCCCChhheE
Confidence 356788899999999999999999999999996 6999999987654 223333 34899999999999999999
Q ss_pred EEE-eCCEEEEEEeCcCcccCCCceEEecC
Q 031937 121 ASM-ENGVLTVTVPKAEEAKKSNVRAVQIS 149 (150)
Q Consensus 121 A~~-~~GvL~I~lpK~~~~~~~~~~~I~I~ 149 (150)
+.+ .||+|+|.+||.+ ......+.|+|+
T Consensus 134 S~LS~dGvLtI~ap~~~-~~~~~er~ipI~ 162 (173)
T KOG3591|consen 134 STLSSDGVLTIEAPKPP-PKQDNERSIPIE 162 (173)
T ss_pred EeeCCCceEEEEccCCC-CcCccceEEeEe
Confidence 999 8999999999998 444356888875
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.60 E-value=1.1e-14 Score=91.79 Aligned_cols=80 Identities=59% Similarity=0.933 Sum_probs=70.4
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeC
Q 031937 46 WKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMEN 125 (150)
Q Consensus 46 v~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~ 125 (150)
|.++++.|.|.+++||+.+++++|.+.+ +.|.|+|+...... .+...+.|.+.+.||..++++.++|++.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~ 71 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLEN 71 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence 4678899999999999999999999997 69999998764322 33456789999999999999999999999
Q ss_pred CEEEEEEeC
Q 031937 126 GVLTVTVPK 134 (150)
Q Consensus 126 GvL~I~lpK 134 (150)
|+|+|.+||
T Consensus 72 ~~l~i~l~K 80 (80)
T cd00298 72 GVLEITLPK 80 (80)
T ss_pred CEEEEEEcC
Confidence 999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.37 E-value=4.9e-12 Score=80.77 Aligned_cols=70 Identities=27% Similarity=0.414 Sum_probs=63.5
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeC
Q 031937 46 WKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMEN 125 (150)
Q Consensus 46 v~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~ 125 (150)
|.++++.+.|.+++||+++++++|.+++ +.|.|++. .|.+.+.||..|+++..+|++.+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~~--------------------~~~~~~~l~~~I~~e~~~~~~~~ 59 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNFP--------------------PYLFELDLAAPIDDEKSSAKIGN 59 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcCC--------------------CEEEEEeCcccccccccEEEEeC
Confidence 4678999999999999999999999997 58888761 37788999999999999999999
Q ss_pred CEEEEEEeCcC
Q 031937 126 GVLTVTVPKAE 136 (150)
Q Consensus 126 GvL~I~lpK~~ 136 (150)
|.|+|+|+|.+
T Consensus 60 ~~l~i~L~K~~ 70 (78)
T cd06469 60 GVLVFTLVKKE 70 (78)
T ss_pred CEEEEEEEeCC
Confidence 99999999987
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.16 E-value=4.2e-10 Score=82.01 Aligned_cols=79 Identities=29% Similarity=0.497 Sum_probs=63.2
Q ss_pred CcccceeEEEEcCC-eEEEEEEcCCCCCCC-eEEEEeCC-eEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCc
Q 031937 38 AFVNTRVDWKETPE-AHVFKADLPGVKKEE-VKVEVEDD-RVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENV 114 (150)
Q Consensus 38 ~~~~p~~dv~e~~~-~~~l~~~lPG~~~ed-i~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v 114 (150)
....+.+++.+.++ +++|.++|||+++++ |+|.+..+ ..|+|... +.+.+++.||..
T Consensus 88 ~~~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-------------------~~~~krv~L~~~- 147 (177)
T PF05455_consen 88 DEESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-------------------EKYLKRVALPWP- 147 (177)
T ss_pred CcceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-------------------CceEeeEecCCC-
Confidence 34467899998888 699999999999888 99999843 35555422 135578999977
Q ss_pred ccCCeeEEEeCCEEEEEEeCcC
Q 031937 115 EVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 115 d~~~i~A~~~~GvL~I~lpK~~ 136 (150)
+.+.++|+|+||||+|+|-+..
T Consensus 148 ~~e~~~~t~nNgILEIri~~~~ 169 (177)
T PF05455_consen 148 DPEITSATFNNGILEIRIRRTE 169 (177)
T ss_pred ccceeeEEEeCceEEEEEeecC
Confidence 6788999999999999998877
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.08 E-value=1.5e-09 Score=69.34 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=65.3
Q ss_pred EEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeC
Q 031937 46 WKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMEN 125 (150)
Q Consensus 46 v~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~ 125 (150)
+.++++.+.|.+.+||..+++++|.+.+ +.|.|++.... .+.|...+.|+..|+++..++++.+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~---------------~~~~~~~~~L~~~I~~~~s~~~~~~ 64 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG---------------GKEYLLEGELFGPIDPEESKWTVED 64 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC---------------CCceEEeeEccCccchhhcEEEEeC
Confidence 3578899999999999999999999996 68999976420 1257788899999999999999999
Q ss_pred CEEEEEEeCcC
Q 031937 126 GVLTVTVPKAE 136 (150)
Q Consensus 126 GvL~I~lpK~~ 136 (150)
|.|.|+|+|+.
T Consensus 65 ~~l~i~L~K~~ 75 (84)
T cd06463 65 RKIEITLKKKE 75 (84)
T ss_pred CEEEEEEEECC
Confidence 99999999987
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.86 E-value=1.5e-08 Score=65.27 Aligned_cols=76 Identities=26% Similarity=0.338 Sum_probs=65.7
Q ss_pred EEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEe
Q 031937 45 DWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASME 124 (150)
Q Consensus 45 dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~ 124 (150)
||+++++.+.|.+.+||+.++++.|.+.+ +.|.|++... ..+.|...+.|...|+++..++++.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~---------------~~~~~~~~~~L~~~I~~~~s~~~~~ 64 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP---------------GGSEYQLELDLFGPIDPEQSKVSVL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC---------------CCCeEEEecccccccCchhcEEEEe
Confidence 57899999999999999999999999996 6888886532 0124667889999999999999999
Q ss_pred CCEEEEEEeCcC
Q 031937 125 NGVLTVTVPKAE 136 (150)
Q Consensus 125 ~GvL~I~lpK~~ 136 (150)
+|.|.|+|.|..
T Consensus 65 ~~~vei~L~K~~ 76 (84)
T cd06466 65 PTKVEITLKKAE 76 (84)
T ss_pred CeEEEEEEEcCC
Confidence 999999999987
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.71 E-value=5.6e-07 Score=56.74 Aligned_cols=77 Identities=22% Similarity=0.305 Sum_probs=63.2
Q ss_pred ceeEEEEcCCeEEEEEEcCCC--CCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCe
Q 031937 42 TRVDWKETPEAHVFKADLPGV--KKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQI 119 (150)
Q Consensus 42 p~~dv~e~~~~~~l~~~lPG~--~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i 119 (150)
|+++|.++++.+.|.+.+++. +++++.|.+.+ +.|.|+...... ..|.-...|...|+++..
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~---------------~~~~~~~~L~~~I~~~~s 64 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDG---------------KEYLLEGELFGEIDPDES 64 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTS---------------CEEEEEEEBSS-BECCCE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCC---------------ceEEEEEEEeeeEcchhc
Confidence 679999999999999999665 49999999997 588888553211 146667889999999999
Q ss_pred eEEEeCCEEEEEEeC
Q 031937 120 KASMENGVLTVTVPK 134 (150)
Q Consensus 120 ~A~~~~GvL~I~lpK 134 (150)
++++.++.|.|+|.|
T Consensus 65 ~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 65 TWKVKDNKIEITLKK 79 (79)
T ss_dssp EEEEETTEEEEEEEB
T ss_pred EEEEECCEEEEEEEC
Confidence 999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.43 E-value=4.2e-06 Score=56.65 Aligned_cols=78 Identities=13% Similarity=0.275 Sum_probs=65.7
Q ss_pred ceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeE
Q 031937 42 TRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKA 121 (150)
Q Consensus 42 p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A 121 (150)
|+++++++.+.+.|.+.+||+ +++.|.+.. +.|.|++.... ++ ..|.-.+.|...|+++..+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~----~~----------~~y~~~~~L~~~I~pe~s~~ 63 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG----GG----------KKYEFDLEFYKEIDPEESKY 63 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC----CC----------eeEEEEeEhhhhccccccEE
Confidence 689999999999999999998 889999997 58999875311 11 13556778999999999999
Q ss_pred EEeCCEEEEEEeCcC
Q 031937 122 SMENGVLTVTVPKAE 136 (150)
Q Consensus 122 ~~~~GvL~I~lpK~~ 136 (150)
++.++.|.|+|.|..
T Consensus 64 ~v~~~kveI~L~K~~ 78 (108)
T cd06465 64 KVTGRQIEFVLRKKE 78 (108)
T ss_pred EecCCeEEEEEEECC
Confidence 999999999999976
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.24 E-value=6.9e-06 Score=65.46 Aligned_cols=65 Identities=32% Similarity=0.563 Sum_probs=56.0
Q ss_pred CCeEEEEEEcCCC-CCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEE--eCC
Q 031937 50 PEAHVFKADLPGV-KKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASM--ENG 126 (150)
Q Consensus 50 ~~~~~l~~~lPG~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~--~~G 126 (150)
.+.++|+++|||+ +..+|+|.|.+ +.|.|..... .|.-.+.||..|+.+..+|+| +.+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence 4799999999999 78999999997 5888885421 366679999999999999999 568
Q ss_pred EEEEEEe
Q 031937 127 VLTVTVP 133 (150)
Q Consensus 127 vL~I~lp 133 (150)
+|+|+||
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.19 E-value=1.6e-05 Score=51.33 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=63.0
Q ss_pred EEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEe
Q 031937 45 DWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASME 124 (150)
Q Consensus 45 dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~ 124 (150)
||+++++...|.+.++|+.++++.|.+.+ +.|.+++.... +. .|.-.+.|...|+++..+.+..
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~-----~~----------~y~~~~~L~~~I~p~~s~~~v~ 64 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS-----GN----------DYSLKLHLLHPIVPEQSSYKIL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC-----CC----------cEEEeeecCceecchhcEEEEe
Confidence 57889999999999999999999999997 58988875411 11 2555678999999998888888
Q ss_pred CCEEEEEEeCcC
Q 031937 125 NGVLTVTVPKAE 136 (150)
Q Consensus 125 ~GvL~I~lpK~~ 136 (150)
.+-+.|.|.|.+
T Consensus 65 ~~kiei~L~K~~ 76 (84)
T cd06489 65 STKIEIKLKKTE 76 (84)
T ss_pred CcEEEEEEEcCC
Confidence 899999999976
No 31
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=98.05 E-value=8.9e-05 Score=48.28 Aligned_cols=78 Identities=24% Similarity=0.242 Sum_probs=65.1
Q ss_pred eeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEE
Q 031937 43 RVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKAS 122 (150)
Q Consensus 43 ~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~ 122 (150)
++||+++++...|.+.+.|+.++++.+.+++ +.|.++..... + ..|.-.+.|-..|+++..+.+
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~-----~----------~~y~~~l~L~~~I~~~~s~~~ 65 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG-----N----------KEFQLDIELWGVIDVEKSSVN 65 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC-----C----------ceEEEEeeccceEChhHcEEE
Confidence 4799999999999999999999999999986 57887754321 0 136667889999999988888
Q ss_pred EeCCEEEEEEeCcC
Q 031937 123 MENGVLTVTVPKAE 136 (150)
Q Consensus 123 ~~~GvL~I~lpK~~ 136 (150)
...+-+.|+|.|.+
T Consensus 66 v~~~kvei~L~K~~ 79 (87)
T cd06488 66 MLPTKVEIKLRKAE 79 (87)
T ss_pred ecCcEEEEEEEeCC
Confidence 88999999999987
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=98.03 E-value=0.00012 Score=47.91 Aligned_cols=78 Identities=14% Similarity=0.341 Sum_probs=63.3
Q ss_pred eeEEEEcCCeEEEEEEcCCCCC---CCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEE-CCCCcccCC
Q 031937 43 RVDWKETPEAHVFKADLPGVKK---EEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFR-LPENVEVDQ 118 (150)
Q Consensus 43 ~~dv~e~~~~~~l~~~lPG~~~---edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~-LP~~vd~~~ 118 (150)
.++++++++...|.+.+|+... ++++|.+.. +.|.|++... ++. .|.-.+. |-..|+++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~-----~~~----------~~~~~~~~L~~~I~~e~ 66 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDL-----NGK----------NYRFTINRLLKKIDPEK 66 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECC-----CCc----------EEEEEehHhhCccCccc
Confidence 5789999999999999999976 999999997 5899887421 111 2333453 889999999
Q ss_pred eeEEEeCCEEEEEEeCcC
Q 031937 119 IKASMENGVLTVTVPKAE 136 (150)
Q Consensus 119 i~A~~~~GvL~I~lpK~~ 136 (150)
.+.+...+-+.|+|.|.+
T Consensus 67 s~~~~~~~ki~i~L~K~~ 84 (92)
T cd06468 67 SSFKVKTDRIVITLAKKK 84 (92)
T ss_pred cEEEEeCCEEEEEEEeCC
Confidence 999999999999999987
No 33
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.97 E-value=0.00012 Score=47.07 Aligned_cols=74 Identities=26% Similarity=0.388 Sum_probs=59.9
Q ss_pred eEEEEcCCeEEEEEEcC-CCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEE
Q 031937 44 VDWKETPEAHVFKADLP-GVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKAS 122 (150)
Q Consensus 44 ~dv~e~~~~~~l~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~ 122 (150)
+.+.++++.+.|.+.+| ++.++++.|.+.+ +.|.|+... .. +.-.-.|...|+++....+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~--------~~----------~~l~~~L~~~I~~~~s~w~ 61 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG--------GE----------PLLDGELYAKVKVDESTWT 61 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC--------CC----------ceEcCcccCceeEcCCEEE
Confidence 46889999999999997 7899999999997 588888541 00 1112358889999988888
Q ss_pred EeC-CEEEEEEeCcC
Q 031937 123 MEN-GVLTVTVPKAE 136 (150)
Q Consensus 123 ~~~-GvL~I~lpK~~ 136 (150)
+.+ ..|.|+|+|.+
T Consensus 62 ~~~~~~v~i~L~K~~ 76 (85)
T cd06467 62 LEDGKLLEITLEKRN 76 (85)
T ss_pred EeCCCEEEEEEEECC
Confidence 988 99999999987
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.88 E-value=0.00023 Score=46.09 Aligned_cols=74 Identities=16% Similarity=0.299 Sum_probs=58.3
Q ss_pred eEEEEcCCeEEEEEEcC-CCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEE
Q 031937 44 VDWKETPEAHVFKADLP-GVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKAS 122 (150)
Q Consensus 44 ~dv~e~~~~~~l~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~ 122 (150)
++++++.+...|.+.+| |+.++|++|++.. +.|.|.... +. .+ -.-.|...|+++..+-+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~-------~~----------~~-~~g~L~~~I~~d~Stw~ 61 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKD-------QA----------PL-LEGKLYSSIDHESSTWI 61 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCC-------CC----------eE-EeCcccCcccccCcEEE
Confidence 46889999999999996 9999999999997 578886420 00 01 12368889999988888
Q ss_pred EeCC-EEEEEEeCcC
Q 031937 123 MENG-VLTVTVPKAE 136 (150)
Q Consensus 123 ~~~G-vL~I~lpK~~ 136 (150)
..+| .|.|+|.|.+
T Consensus 62 i~~~~~l~i~L~K~~ 76 (85)
T cd06493 62 IKENKSLEVSLIKKD 76 (85)
T ss_pred EeCCCEEEEEEEECC
Confidence 8777 7999999987
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.63 E-value=0.00098 Score=44.08 Aligned_cols=77 Identities=17% Similarity=0.354 Sum_probs=61.2
Q ss_pred ccceeEEEEcCCeEEEEEEcC-CCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCC
Q 031937 40 VNTRVDWKETPEAHVFKADLP-GVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQ 118 (150)
Q Consensus 40 ~~p~~dv~e~~~~~~l~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~ 118 (150)
..+.+.+.++.+...|.+.+| |..++|+.|.+.. +.|.|.-... . .-.| .|...|+++.
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~g~--------~-----~l~G------~L~~~I~~de 63 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVKGQ--------E-----VLKG------KLFDSVVADE 63 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEECCE--------E-----EEcC------cccCccCccc
Confidence 357899999999999999997 8999999999997 5888874210 0 0112 5788899998
Q ss_pred eeEEEeCCE-EEEEEeCcC
Q 031937 119 IKASMENGV-LTVTVPKAE 136 (150)
Q Consensus 119 i~A~~~~Gv-L~I~lpK~~ 136 (150)
..-++++|- |.|+|.|..
T Consensus 64 stWtled~k~l~I~L~K~~ 82 (93)
T cd06494 64 CTWTLEDRKLIRIVLTKSN 82 (93)
T ss_pred CEEEEECCcEEEEEEEeCC
Confidence 888898775 899999986
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.59 E-value=0.0018 Score=43.84 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=61.2
Q ss_pred cceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCee
Q 031937 41 NTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIK 120 (150)
Q Consensus 41 ~p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~ 120 (150)
.|+++++++.+.+.|++.+|+ .++++|.+.+ +.|.++|... ++. .|.-.+.|=..|+++..+
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~-----~g~----------~y~~~l~l~~~I~pe~Sk 62 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG-----DNV----------KIYNEIELYDRVDPNDSK 62 (106)
T ss_pred CCcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC-----CCc----------EEEEEEEeecccCcccCe
Confidence 378999999999999999999 5899999997 5899998431 111 233457788889999777
Q ss_pred EEEeCCEEEEEEeCcC
Q 031937 121 ASMENGVLTVTVPKAE 136 (150)
Q Consensus 121 A~~~~GvL~I~lpK~~ 136 (150)
.+...--+.|.|.|++
T Consensus 63 ~~v~~r~ve~~L~K~~ 78 (106)
T cd00237 63 HKRTDRSILCCLRKGK 78 (106)
T ss_pred EEeCCceEEEEEEeCC
Confidence 7766778899999986
No 37
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=97.25 E-value=0.0014 Score=48.16 Aligned_cols=80 Identities=24% Similarity=0.318 Sum_probs=62.1
Q ss_pred cceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCee
Q 031937 41 NTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIK 120 (150)
Q Consensus 41 ~p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~ 120 (150)
.+++|++++....+|.+-.+++.++|++|.+.+ +.|.+..+.... . .|.-...|-..|.+++.+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~g-----~----------~~~l~~~L~~~I~pe~~s 66 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPSG-----S----------EYNLQLKLYHEIIPEKSS 66 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCCc-----h----------hhhhhHHhccccccccee
Confidence 467999999999999999999999999999996 688777554311 1 233334477788888777
Q ss_pred EEEeCCEEEEEEeCcC
Q 031937 121 ASMENGVLTVTVPKAE 136 (150)
Q Consensus 121 A~~~~GvL~I~lpK~~ 136 (150)
-+.----++|+|+|..
T Consensus 67 ~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 67 FKVFSTKVEITLAKAE 82 (196)
T ss_pred eEeeeeeEEEEecccc
Confidence 7777778899998854
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.15 E-value=0.003 Score=51.26 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=65.9
Q ss_pred cceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCee
Q 031937 41 NTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIK 120 (150)
Q Consensus 41 ~p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~ 120 (150)
.++.||+++++.++|.|.+.|+.++++.|.+.+ +.|.|+..... + ..|...+.|-..|+++..+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~-----~----------~~y~~~~~L~~~I~p~~s~ 219 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPG-----E----------DAYHLQPRLFGKIIPDKCK 219 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCC-----C----------cceeecccccccccccccE
Confidence 478999999999999999999999999999997 58888854321 1 1244557888999999888
Q ss_pred EEEeCCEEEEEEeCcC
Q 031937 121 ASMENGVLTVTVPKAE 136 (150)
Q Consensus 121 A~~~~GvL~I~lpK~~ 136 (150)
.+....-++|+|.|..
T Consensus 220 ~~v~~~Kiei~l~K~~ 235 (356)
T PLN03088 220 YEVLSTKIEIRLAKAE 235 (356)
T ss_pred EEEecceEEEEEecCC
Confidence 8888789999999876
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.75 E-value=0.037 Score=35.92 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=53.6
Q ss_pred eEEEEcCCeEEEEEEcCCCC--CCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeE
Q 031937 44 VDWKETPEAHVFKADLPGVK--KEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKA 121 (150)
Q Consensus 44 ~dv~e~~~~~~l~~~lPG~~--~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A 121 (150)
.||+++++..+|.+...+.. ..++.+.... +.|.|+-... . ..|...+.|=..|+++. +.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~----~------------~~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG----D------------KSYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC----C------------ceEEEeeeccccCCCCc-EE
Confidence 48999999999999998654 4455555554 4788764321 1 03556678888888775 55
Q ss_pred EEe--CCEEEEEEeCcC
Q 031937 122 SME--NGVLTVTVPKAE 136 (150)
Q Consensus 122 ~~~--~GvL~I~lpK~~ 136 (150)
++. -|-++|+|.|.+
T Consensus 63 ~~~~~~~KVEI~L~K~e 79 (87)
T cd06490 63 RISTETGKIELVLKKKE 79 (87)
T ss_pred EEcccCceEEEEEEcCC
Confidence 554 789999999987
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.39 E-value=0.042 Score=35.70 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=54.7
Q ss_pred EEEEcCCeEEEEEEcC-C--CCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeE
Q 031937 45 DWKETPEAHVFKADLP-G--VKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKA 121 (150)
Q Consensus 45 dv~e~~~~~~l~~~lP-G--~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A 121 (150)
.+..+.+...|.+.+| | .+..+++|.+.. +.|.|.-+.. ... + .=.|...|+++.-.-
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~--------~~~--------i--~G~L~~~V~~des~W 62 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQ--------PPI--------I--DGELYNEVKVEESSW 62 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCC--------ceE--------E--eCcccCcccccccEE
Confidence 4567888999999996 3 789999999997 5788753211 111 1 125788889988888
Q ss_pred EEeCC-EEEEEEeCcC
Q 031937 122 SMENG-VLTVTVPKAE 136 (150)
Q Consensus 122 ~~~~G-vL~I~lpK~~ 136 (150)
.+++| .|.|+|-|..
T Consensus 63 tled~~~l~i~L~K~~ 78 (87)
T cd06492 63 LIEDGKVVTVNLEKIN 78 (87)
T ss_pred EEeCCCEEEEEEEECC
Confidence 89886 8999999985
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.25 E-value=0.11 Score=34.81 Aligned_cols=80 Identities=15% Similarity=0.322 Sum_probs=59.6
Q ss_pred cceeEEEEcCCeEEEEEEcC-CC-CCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCC
Q 031937 41 NTRVDWKETPEAHVFKADLP-GV-KKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQ 118 (150)
Q Consensus 41 ~p~~dv~e~~~~~~l~~~lP-G~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~ 118 (150)
...+.+..+-+...|.+.+| |. +..+|.|.+.. +.|.|.-+.. .+.... -.| .|...|+.+.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~-----~~~~~~----i~G------~L~~~V~~de 67 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDG-----GGEKVL----MEG------EFTHKINTEN 67 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecC-----CCCceE----EeC------cccCcccCcc
Confidence 46789999999999999999 54 57899999997 5788774310 000001 011 4888899998
Q ss_pred eeEEEeCC-EEEEEEeCcC
Q 031937 119 IKASMENG-VLTVTVPKAE 136 (150)
Q Consensus 119 i~A~~~~G-vL~I~lpK~~ 136 (150)
-.-.+++| .|.|+|-|..
T Consensus 68 s~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 68 SLWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred ceEEEeCCCEEEEEEEECC
Confidence 88889886 5899999976
No 42
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=88.54 E-value=5.8 Score=29.21 Aligned_cols=80 Identities=20% Similarity=0.380 Sum_probs=58.7
Q ss_pred CcccceeEEEEcCCeEEEEEEcC-CC-CCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcc
Q 031937 38 AFVNTRVDWKETPEAHVFKADLP-GV-KKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVE 115 (150)
Q Consensus 38 ~~~~p~~dv~e~~~~~~l~~~lP-G~-~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd 115 (150)
+...+.+.|..+=..+.|.+.+| |+ ...+|.|.+.. +.|.|.-+.... +. -| .|...|+
T Consensus 15 g~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~~--------il----dG------~L~~~vk 75 (179)
T KOG2265|consen 15 GADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQPP--------IL----DG------ELSHSVK 75 (179)
T ss_pred CccccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCCc--------ee----cC------ccccccc
Confidence 34567889999999999998884 77 78899999996 677776432211 10 12 3677788
Q ss_pred cCCeeEEEeCCEEEEEEeCcC
Q 031937 116 VDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 116 ~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.+...-.+++|.+.|.+-++.
T Consensus 76 ~des~WtiEd~k~i~i~l~K~ 96 (179)
T KOG2265|consen 76 VDESTWTIEDGKMIVILLKKS 96 (179)
T ss_pred cccceEEecCCEEEEEEeecc
Confidence 888899999998877776665
No 43
>PF14913 DPCD: DPCD protein family
Probab=87.77 E-value=8 Score=28.89 Aligned_cols=80 Identities=19% Similarity=0.385 Sum_probs=58.9
Q ss_pred CcccceeEEEEcCCeEEEEE-EcCCCCCCCeEEEEeCC-eEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCC--
Q 031937 38 AFVNTRVDWKETPEAHVFKA-DLPGVKKEEVKVEVEDD-RVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPEN-- 113 (150)
Q Consensus 38 ~~~~p~~dv~e~~~~~~l~~-~lPG~~~edi~V~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~-- 113 (150)
+..+|-+-=.++...|.-++ .|| +.++-.+|+++++ +.++|+... ..|.+.|.+|+-
T Consensus 83 Ss~nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtN------------------KKYyKk~~IPDl~R 143 (194)
T PF14913_consen 83 SSSNPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTN------------------KKYYKKFSIPDLDR 143 (194)
T ss_pred cCCCCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcC------------------ccceeEecCCcHHh
Confidence 34556666677888898888 455 5888888888854 468887432 246778889942
Q ss_pred ----cccCCeeEEEeCCEEEEEEeCcC
Q 031937 114 ----VEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 114 ----vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.+.+.++..+.|..|.|+..|..
T Consensus 144 ~~l~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 144 CGLPLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred hCCCcchhhceeeeecCeEEEEecCcH
Confidence 36677888899999999998864
No 44
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=84.41 E-value=5.2 Score=29.42 Aligned_cols=81 Identities=10% Similarity=0.223 Sum_probs=58.7
Q ss_pred CcccceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccC
Q 031937 38 AFVNTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVD 117 (150)
Q Consensus 38 ~~~~p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~ 117 (150)
....|.+.|.+..+.+.+++.++- ..+..|.++. ..|+++|+.... + -.+...|.|=..||++
T Consensus 4 ~~~~p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~-~~l~fs~k~~~d------~--------~~~~~~ief~~eIdpe 66 (180)
T KOG3158|consen 4 GMQPPEVKWAQRRDLVYLTVCVED--AKDVHVNLEP-SKLTFSCKSGAD------N--------HKYENEIEFFDEIDPE 66 (180)
T ss_pred cccCCcchhhhhcCeEEEEEEecc--Cccceeeccc-cEEEEEeccCCC------c--------eeeEEeeehhhhcCHh
Confidence 356789999999999999999975 4566666665 589999885411 1 1355668888899999
Q ss_pred CeeEEEeCCEEEEEEeCcC
Q 031937 118 QIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 118 ~i~A~~~~GvL~I~lpK~~ 136 (150)
+.+-+-. +-+...++++.
T Consensus 67 ~sk~k~~-~r~if~i~~K~ 84 (180)
T KOG3158|consen 67 KSKHKRT-SRSIFCILRKK 84 (180)
T ss_pred hcccccc-ceEEEEEEEcc
Confidence 7776665 66666666655
No 45
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=83.61 E-value=2.7 Score=27.24 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=29.0
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.|.-.+.|| +++.+.|+.++.+|.|+|+.-+..
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 466678999 889999999999999999998765
No 46
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=81.70 E-value=9.5 Score=29.91 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=67.6
Q ss_pred cccceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCC
Q 031937 39 FVNTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQ 118 (150)
Q Consensus 39 ~~~p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~ 118 (150)
..+-+.||..++..++|.+..-|.-++.-.|..+. ..|.|.-.... + ..+|...+.|=.-|+.+.
T Consensus 212 V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~----g----------na~fd~d~kLwgvvnve~ 276 (320)
T KOG1667|consen 212 VVKCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGF----G----------NASFDLDYKLWGVVNVEE 276 (320)
T ss_pred cccchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecC----C----------Cceeeccceeeeeechhh
Confidence 56678899999999999999999999988888874 67887755421 1 225777777777789999
Q ss_pred eeEEEeCCEEEEEEeCcC
Q 031937 119 IKASMENGVLTVTVPKAE 136 (150)
Q Consensus 119 i~A~~~~GvL~I~lpK~~ 136 (150)
.++.+-.--++|+|+|.+
T Consensus 277 s~v~m~~tkVEIsl~k~e 294 (320)
T KOG1667|consen 277 SSVVMGETKVEISLKKAE 294 (320)
T ss_pred ceEEeecceEEEEEeccC
Confidence 999998899999999987
No 47
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=80.48 E-value=6.3 Score=25.35 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=29.3
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
+|.-.+.|| .+..+.|+..++++.|+|+..+..
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~ 44 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVENNQLTVTGKKAD 44 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577789999 689999999999999999988766
No 48
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=79.92 E-value=4.5 Score=25.93 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=29.0
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.|.-.+.|| +++++.|+-.+++|.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477778999 889999999999999999997755
No 49
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=79.59 E-value=4.4 Score=25.88 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=28.5
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.|.-.+.|| ++.++.|+.++.+|.|+|+.-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577788999 788999999999999999997644
No 50
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=78.17 E-value=6.2 Score=25.09 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=28.7
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.|.-.+.|| +++++.|+.++.+|.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHEE 40 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEce
Confidence 577789999 899999999999999999996543
No 51
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=78.11 E-value=5.5 Score=25.54 Aligned_cols=33 Identities=6% Similarity=0.195 Sum_probs=28.5
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.|.-.+.|| +++++.|+.+..+|.|+|+.-+.+
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHSE 43 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577788999 889999999999999999986544
No 52
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=78.05 E-value=10 Score=22.96 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=31.9
Q ss_pred eeEEE-EcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEe
Q 031937 43 RVDWK-ETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRK 84 (150)
Q Consensus 43 ~~dv~-e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~ 84 (150)
++.+. -..+.|.|++..+|+..-.-.|.+..|....|+...+
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 34555 4467999999999999888888888766777776543
No 53
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=77.71 E-value=21 Score=24.95 Aligned_cols=83 Identities=16% Similarity=0.226 Sum_probs=49.8
Q ss_pred ceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeE
Q 031937 42 TRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKA 121 (150)
Q Consensus 42 p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A 121 (150)
..+.|...++ ..++++. ..+.++++.++ +.|.|+.+...... ...+..... ...-.-.+.||.....++++.
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~-~~L~I~~~~~~~~~--~~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i 137 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEG-GTLTIKSKDRESFF--FKGFNFNNS-DNKSKITIYLPKDYKLDKIDI 137 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEcC-CEEEEEEecccccc--cceEEEccc-CCCcEEEEEECCCCceeEEEE
Confidence 4456665443 4445555 21268888886 59999876221110 111211111 234556789999988889999
Q ss_pred EEeCCEEEEEE
Q 031937 122 SMENGVLTVTV 132 (150)
Q Consensus 122 ~~~~GvL~I~l 132 (150)
.-.+|-+.|.=
T Consensus 138 ~~~~G~i~i~~ 148 (166)
T PF13349_consen 138 KTSSGDITIED 148 (166)
T ss_pred EeccccEEEEc
Confidence 99999888753
No 54
>PRK10743 heat shock protein IbpA; Provisional
Probab=77.04 E-value=9.6 Score=26.81 Aligned_cols=32 Identities=9% Similarity=0.267 Sum_probs=26.2
Q ss_pred EEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 104 FSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 104 f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
|.-...|| +++.++|+..+++|+|+|..-+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 33346688 889999999999999999997655
No 55
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=76.41 E-value=6.5 Score=25.04 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=28.9
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.|.-.+.|| .++++.|+.+..+|.|+|+.-+..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 577778999 889999999999999999987654
No 56
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=75.78 E-value=6.8 Score=25.13 Aligned_cols=33 Identities=24% Similarity=0.467 Sum_probs=28.4
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.|.-.+.|| +++.+.|+..+.++.|+|..-+..
T Consensus 11 ~~~i~~~lP-Gv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 11 EYIVEADLP-GFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 466779999 799999999999999999887754
No 57
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=75.15 E-value=6.8 Score=24.69 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=29.6
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.|.-.+.|| ++.++.|+..++++.|+|..-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~ 40 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEE 40 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEee
Confidence 577889999 599999999999999999998766
No 58
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=74.34 E-value=1.9 Score=34.17 Aligned_cols=82 Identities=22% Similarity=0.145 Sum_probs=61.3
Q ss_pred ccceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCe
Q 031937 40 VNTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQI 119 (150)
Q Consensus 40 ~~p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i 119 (150)
..-.+++.++.....|-+.-|-+..++|++-+.. |+|.|+-+..... --+.-.+.|-..|+++..
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~~~--------------~~~~~~~~Ly~ev~P~~~ 239 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRRLR--------------LWNDITISLYKEVYPDIR 239 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeeccccc--------------hHHHhhhhhhhhcCcchh
Confidence 3456788899999999999999999999999995 7999986643211 113345677788888877
Q ss_pred eEEEeCCEEEEEEeCcC
Q 031937 120 KASMENGVLTVTVPKAE 136 (150)
Q Consensus 120 ~A~~~~GvL~I~lpK~~ 136 (150)
+-+.---.++|++-|..
T Consensus 240 s~k~fsK~~e~~l~KV~ 256 (368)
T COG5091 240 SIKSFSKRVEVHLRKVE 256 (368)
T ss_pred hhhhcchhheehhhhhh
Confidence 76665578888887765
No 59
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=72.48 E-value=14 Score=26.19 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=26.3
Q ss_pred EEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 104 FSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 104 f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
|.-.+.|| +++.++|.-.+++|.|+|+.-+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 44457788 889999999999999999997654
No 60
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=72.25 E-value=12 Score=24.09 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=28.7
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.|.-.+.|| .+.++.|+.+++++.|+|..-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 577788899 788999999999999999998654
No 61
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=71.81 E-value=8.3 Score=24.62 Aligned_cols=33 Identities=12% Similarity=0.259 Sum_probs=28.2
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.|.-.+.|| +++++.|+.++.++.|+|..-+..
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHEE 40 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 577788998 889999999999999999996543
No 62
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=71.81 E-value=26 Score=23.13 Aligned_cols=40 Identities=18% Similarity=0.062 Sum_probs=30.4
Q ss_pred ccceeEEEEcCCeEEEEEEcCCC-----CCCCeEEEEeCCeEEEEE
Q 031937 40 VNTRVDWKETPEAHVFKADLPGV-----KKEEVKVEVEDDRVLQIS 80 (150)
Q Consensus 40 ~~p~~dv~e~~~~~~l~~~lPG~-----~~edi~V~v~~~~~L~I~ 80 (150)
..|.+.|+++++.|.|.+--+.- .++...|+-.+| .+.|.
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 36999999999999999866553 667777777766 45554
No 63
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=70.03 E-value=13 Score=23.84 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=28.9
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.|.-.+.|| +++++.|+-.+.++.|+|+.-+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 577789999 889999999999999999997654
No 64
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=69.59 E-value=15 Score=23.45 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=27.0
Q ss_pred eEEEEEECCCCcccCCeeEEEeCC-EEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENG-VLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~G-vL~I~lpK~~ 136 (150)
.|.-.+.|| ++..+.|+..+.+| +|+|+.-+..
T Consensus 10 ~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~ 43 (92)
T cd06472 10 AHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKK 43 (92)
T ss_pred eEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecc
Confidence 466778999 68999999999765 9999997654
No 65
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=66.89 E-value=17 Score=23.44 Aligned_cols=32 Identities=16% Similarity=0.405 Sum_probs=26.8
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCc
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKA 135 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~ 135 (150)
.|.-.+.|| +++.+.|+-++.++.|.|+.-+.
T Consensus 8 ~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 8 EYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp EEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred EEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 577789999 88999999999999999999877
No 66
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=66.77 E-value=5.9 Score=23.89 Aligned_cols=15 Identities=47% Similarity=0.512 Sum_probs=11.5
Q ss_pred CCeeEEEeCCEEEEE
Q 031937 117 DQIKASMENGVLTVT 131 (150)
Q Consensus 117 ~~i~A~~~~GvL~I~ 131 (150)
..|.|.|+||+|.-.
T Consensus 3 ~~I~aiYe~GvlkPl 17 (60)
T PF01954_consen 3 KVIEAIYENGVLKPL 17 (60)
T ss_dssp --EEEEEETTEEEEC
T ss_pred ceEEEEEECCEEEEC
Confidence 458999999999754
No 67
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=64.37 E-value=18 Score=23.57 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=25.9
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEeCCeEEEEEE
Q 031937 51 EAHVFKADLP-GVKKEEVKVEVEDDRVLQISG 81 (150)
Q Consensus 51 ~~~~l~~~lP-G~~~edi~V~v~~~~~L~I~g 81 (150)
..|.=.+.|| +++.++|+-.+..+..|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 5788889998 899999999999334999986
No 68
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=64.15 E-value=17 Score=22.29 Aligned_cols=33 Identities=33% Similarity=0.554 Sum_probs=29.0
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
.|.-.+.||. ++.+.++.++.++.|.|+.-+..
T Consensus 8 ~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~ 40 (88)
T cd06464 8 AYVVEADLPG-FKKEDIKVEVEDGVLTISGEREE 40 (88)
T ss_pred EEEEEEECCC-CCHHHeEEEEECCEEEEEEEEec
Confidence 5777899995 89999999999999999988775
No 69
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=60.96 E-value=52 Score=24.26 Aligned_cols=46 Identities=28% Similarity=0.478 Sum_probs=31.1
Q ss_pred CCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031937 63 KKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVP 133 (150)
Q Consensus 63 ~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lp 133 (150)
=|++++|++++ +.++|+|.+ |...+.+ |.. .++...++|.|.|...
T Consensus 12 IP~~V~v~i~~-~~v~VkGp~------------------G~L~~~~--~~~----~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 12 IPEGVTVEIEG-LVVTVKGPK------------------GELTRDF--WYP----GVTISVEDGKVVIETE 57 (180)
T ss_pred cCCCCEEEEEC-CEEEEECCC------------------eEEEEEe--cCC----cEEEEEECCEEEEEEC
Confidence 37889999986 689999774 3444444 321 3555678888887754
No 70
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=59.11 E-value=27 Score=24.49 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=26.6
Q ss_pred EEEEEECCCCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 104 FSRRFRLPENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 104 f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
|.-.+.|| +++.+.|+-.+.++.|+|+.-+..
T Consensus 52 ~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 52 YRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 33447788 889999999999999999998865
No 71
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=58.91 E-value=23 Score=20.74 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=19.9
Q ss_pred CCCCCCCeEEEEeCCeEEEEEEEEeee
Q 031937 60 PGVKKEEVKVEVEDDRVLQISGQRKIE 86 (150)
Q Consensus 60 PG~~~edi~V~v~~~~~L~I~g~~~~~ 86 (150)
++++..+|+|.+.+| .+.++|.-...
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESSC
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcHH
Confidence 467777999999975 89999998543
No 72
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=56.74 E-value=75 Score=23.18 Aligned_cols=45 Identities=24% Similarity=0.485 Sum_probs=30.5
Q ss_pred CCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031937 64 KEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVP 133 (150)
Q Consensus 64 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lp 133 (150)
|++++|++.+ +.++|+|.+ |...+.+. |. .+....+++.|.|...
T Consensus 7 P~~V~v~i~~-~~i~vkGp~------------------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPK------------------GEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCC------------------eEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 6788999986 689999774 34444442 32 3455678888888754
No 73
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=56.04 E-value=71 Score=23.33 Aligned_cols=44 Identities=30% Similarity=0.590 Sum_probs=30.3
Q ss_pred CCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031937 64 KEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVP 133 (150)
Q Consensus 64 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lp 133 (150)
|++|+|++++ +.|+|+|.. |...+.+ |. .+....+++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~------------------G~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPK------------------GELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCC------------------eEEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 6889999986 689999764 3444444 53 3455568888777754
No 74
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=53.72 E-value=75 Score=23.26 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=30.1
Q ss_pred CCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031937 64 KEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVP 133 (150)
Q Consensus 64 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lp 133 (150)
|++++|++.+ +.|+|+|.. |...+.+ |.. +....+++.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp~------------------G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPK------------------GELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC------------------EEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 6889999986 689999764 3455544 433 444568887777654
No 75
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=53.67 E-value=52 Score=20.91 Aligned_cols=44 Identities=18% Similarity=0.453 Sum_probs=28.2
Q ss_pred CCCceEEEEeeeeeeEEEEEECCCCcccCC-eeEEEeCCEE-EEEE
Q 031937 89 DRNDTWHRVERSSGAFSRRFRLPENVEVDQ-IKASMENGVL-TVTV 132 (150)
Q Consensus 89 ~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~-i~A~~~~GvL-~I~l 132 (150)
..-+.|......+--+.|.|.+|+...+.. +.-.|.+|-+ .|.-
T Consensus 28 ~~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~~ 73 (85)
T PF14814_consen 28 DRPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQD 73 (85)
T ss_dssp -STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEEE
T ss_pred CCCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEEE
Confidence 345666666666667899999999987665 8888888744 4543
No 76
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=50.78 E-value=76 Score=23.60 Aligned_cols=48 Identities=27% Similarity=0.366 Sum_probs=31.8
Q ss_pred CCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031937 63 KKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVP 133 (150)
Q Consensus 63 ~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lp 133 (150)
=|++++|++.+ +.++|+|.+ |...+.+ |.. ...+....++|.|.|.-+
T Consensus 12 IP~~V~V~i~~-~~v~VkGp~------------------G~L~~~~--~~~--~~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 12 IPEGVTVTVKS-RKVTVTGKY------------------GELTRSF--RHL--PVDIKLSKDGKYIKVEMW 59 (190)
T ss_pred cCCCCEEEEEC-CEEEEECCC------------------ceEEEEe--cCC--CceEEEEeCCCEEEEEeC
Confidence 37899999996 689999763 3455444 321 024566678888777754
No 77
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=49.77 E-value=39 Score=20.87 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.1
Q ss_pred EEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031937 104 FSRRFRLPENVEVDQIKASMENGVLTVTVP 133 (150)
Q Consensus 104 f~r~i~LP~~vd~~~i~A~~~~GvL~I~lp 133 (150)
..-.|.+|..+..++++..+.+.-|.|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 455678998888899999998888888886
No 78
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=46.42 E-value=26 Score=22.63 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=19.2
Q ss_pred CCCCCCCCcCcccceeEEEEcCCeEEEEEEcCCC
Q 031937 29 SSQFPQETSAFVNTRVDWKETPEAHVFKADLPGV 62 (150)
Q Consensus 29 ~~~~~~~~~~~~~p~~dv~e~~~~~~l~~~lPG~ 62 (150)
...+|.+......|.+.+...++.|+.++.||.-
T Consensus 9 C~~Lp~d~~~~~~P~~~~~~~~~~~~c~v~LP~~ 42 (90)
T PF03368_consen 9 CSTLPSDSFTNLKPEFEIEKIGSGFICTVILPIN 42 (90)
T ss_dssp HTTSSS-TT--SS-EEEEEE--G-EEEEEE--TT
T ss_pred HhcCCCCCCccCCceEEEEEcCCcEEEEEECCCC
Confidence 3445655566678999999999999999999953
No 79
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=45.66 E-value=92 Score=23.32 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=52.2
Q ss_pred eEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEE-ECCCCcccCCeeEE
Q 031937 44 VDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRF-RLPENVEVDQIKAS 122 (150)
Q Consensus 44 ~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i-~LP~~vd~~~i~A~ 122 (150)
+-|-..++-+.+.+.|-|+..++++|.+.. +.|-+.-+.-. +. +|.-.+ .|=..|++++-+-.
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dlq-----GK----------~y~~~vnnLlk~I~vEks~~k 140 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDLQ-----GK----------NYRMIVNNLLKPISVEKSSKK 140 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecc-cceeeeeeecC-----Cc----------ceeeehhhhccccChhhcccc
Confidence 556677888889999999999999999996 57766643211 11 222222 23456778877777
Q ss_pred EeCCEEEEEEeCcC
Q 031937 123 MENGVLTVTVPKAE 136 (150)
Q Consensus 123 ~~~GvL~I~lpK~~ 136 (150)
.+-..+.|.+.|.+
T Consensus 141 vKtd~v~I~~kkVe 154 (224)
T KOG3260|consen 141 VKTDTVLILCKKVE 154 (224)
T ss_pred cccceEEEeehhhh
Confidence 77777777775544
No 80
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=44.56 E-value=97 Score=22.70 Aligned_cols=44 Identities=23% Similarity=0.585 Sum_probs=29.6
Q ss_pred CCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031937 64 KEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVP 133 (150)
Q Consensus 64 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lp 133 (150)
|++++|++++ +.|+|+|.. |... ..||.. +....+++.|.|..+
T Consensus 12 P~~V~v~i~~-~~v~vkGp~------------------G~l~--~~~~~~-----v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPK------------------GTLS--RKIPDL-----ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC------------------EEEE--EECCCC-----eEEEEeCCEEEEEcC
Confidence 5788999985 689999764 3333 345543 455568887777654
No 81
>PRK10568 periplasmic protein; Provisional
Probab=42.97 E-value=50 Score=24.65 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=20.6
Q ss_pred CCCCCCCeEEEEeCCeEEEEEEEEee
Q 031937 60 PGVKKEEVKVEVEDDRVLQISGQRKI 85 (150)
Q Consensus 60 PG~~~edi~V~v~~~~~L~I~g~~~~ 85 (150)
++++..+|+|.+.+| .+++.|.-..
T Consensus 73 ~~i~~~~I~V~v~~G-~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQK-VVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECC-EEEEEEEeCC
Confidence 567778899999986 8999999864
No 82
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=41.97 E-value=1.2e+02 Score=21.32 Aligned_cols=74 Identities=9% Similarity=0.148 Sum_probs=46.2
Q ss_pred cceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCC-e
Q 031937 41 NTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQ-I 119 (150)
Q Consensus 41 ~p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~-i 119 (150)
.|.+.|.-.++.|+-.+-.|| .+..++..|+.....+ +.| ..+..+++.||.....++ +
T Consensus 26 ~~~lKilS~Dgtf~Ni~~~~~-----------~~aiIt~~GtY~~~sD---~~Y------~E~IeKnv~lp~~~g~~n~l 85 (133)
T PF14869_consen 26 SNVLKILSDDGTFVNITMIPK-----------SGAIITGYGTYEQPSD---NIY------VESIEKNVHLPFLDGKDNEL 85 (133)
T ss_pred cccEEEEcCCCcEEEEEEeCC-----------CCcEEEEeEEEEEcCC---ccc------eeeecceecCcccCCCccEE
Confidence 455778877777766655555 2345666666544322 122 225677888997765554 7
Q ss_pred eEEE-eCCEEEEEEeC
Q 031937 120 KASM-ENGVLTVTVPK 134 (150)
Q Consensus 120 ~A~~-~~GvL~I~lpK 134 (150)
+-++ +|++|.|+.--
T Consensus 86 ~fe~~~dnll~iky~~ 101 (133)
T PF14869_consen 86 EFELLHDNLLKIKYFL 101 (133)
T ss_pred EEEecCCCEEEEEEEc
Confidence 7777 67888887743
No 83
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=40.18 E-value=81 Score=23.10 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=24.9
Q ss_pred EEEcC-CCCCCCeEEEEeCCeEEEEEEEEeee
Q 031937 56 KADLP-GVKKEEVKVEVEDDRVLQISGQRKIE 86 (150)
Q Consensus 56 ~~~lP-G~~~edi~V~v~~~~~L~I~g~~~~~ 86 (150)
+..|| |++++.|.-.+..+.+|+|+|.+...
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCCC
Confidence 34565 89999999999966699999987653
No 84
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=39.57 E-value=32 Score=22.99 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.0
Q ss_pred CCeeEEEeCCEEEEEEeC
Q 031937 117 DQIKASMENGVLTVTVPK 134 (150)
Q Consensus 117 ~~i~A~~~~GvL~I~lpK 134 (150)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 457788899999999983
No 85
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=39.20 E-value=40 Score=22.63 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=15.7
Q ss_pred CCeeEEEeCCEEEEEEeCc
Q 031937 117 DQIKASMENGVLTVTVPKA 135 (150)
Q Consensus 117 ~~i~A~~~~GvL~I~lpK~ 135 (150)
..+.+.+.+|+|+|.++..
T Consensus 30 ~d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp STEEEEEETTEEEEEETTS
T ss_pred CceEEEccCCEEEEEECCC
Confidence 3578999999999999643
No 86
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=39.11 E-value=1.4e+02 Score=22.20 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=30.2
Q ss_pred CCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031937 64 KEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVP 133 (150)
Q Consensus 64 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lp 133 (150)
|++++|++++ +.|+|+|.+ |...+ .||.. + -.+....++|.|.|.-+
T Consensus 12 P~~V~V~i~~-~~ItVkGpk------------------G~Ls~--~~~~~-~-~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKR------------------GTLTK--DLRHL-Q-LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeC-CEEEEECCC------------------cEEEE--EcCCC-C-cEEEEEecCCEEEEEeC
Confidence 6899999986 689999774 23443 34431 0 12455667788887744
No 87
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=38.49 E-value=1.5e+02 Score=22.74 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEEEEEeeecc-CCCceEE------EEeeeeeeEEEEEECCCC
Q 031937 69 VEVEDDRVLQISGQRKIEKE-DRNDTWH------RVERSSGAFSRRFRLPEN 113 (150)
Q Consensus 69 V~v~~~~~L~I~g~~~~~~~-~~~~~~~------~~e~~~g~f~r~i~LP~~ 113 (150)
|.+.+| .|+|++.+..... .....+. .....+|.|+-++.||..
T Consensus 60 v~v~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 455566 6888887654211 0111222 122467899999999953
No 88
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=38.19 E-value=16 Score=26.21 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=16.0
Q ss_pred CcccCCeeEEEeCCEEEEEEe
Q 031937 113 NVEVDQIKASMENGVLTVTVP 133 (150)
Q Consensus 113 ~vd~~~i~A~~~~GvL~I~lp 133 (150)
.+..+.--+.|.||||+|.|+
T Consensus 68 ~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 68 EVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred hcCccccccccccceEEEEec
Confidence 344455567799999999998
No 89
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=38.00 E-value=35 Score=22.85 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.4
Q ss_pred eeEEEeCCEEEEEEeCc
Q 031937 119 IKASMENGVLTVTVPKA 135 (150)
Q Consensus 119 i~A~~~~GvL~I~lpK~ 135 (150)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 67888999999999754
No 90
>PRK14282 chaperone protein DnaJ; Provisional
Probab=37.08 E-value=1.7e+02 Score=23.90 Aligned_cols=23 Identities=9% Similarity=0.322 Sum_probs=14.0
Q ss_pred cccCCeeEEEeCC-EEEEEEeCcC
Q 031937 114 VEVDQIKASMENG-VLTVTVPKAE 136 (150)
Q Consensus 114 vd~~~i~A~~~~G-vL~I~lpK~~ 136 (150)
+--..+....-+| .|+|.+|+..
T Consensus 290 l~G~~~~i~~ldG~~i~v~Ip~g~ 313 (369)
T PRK14282 290 ILGTTVEVPLPEGGTTMLKIPPGT 313 (369)
T ss_pred hCCCEEEEeCCCCcEEEEEeCCCc
Confidence 3334444444566 6899998654
No 91
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=36.77 E-value=33 Score=22.85 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=14.3
Q ss_pred CeeEEEeCCEEEEEEeC
Q 031937 118 QIKASMENGVLTVTVPK 134 (150)
Q Consensus 118 ~i~A~~~~GvL~I~lpK 134 (150)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 37788899999999974
No 92
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=32.48 E-value=45 Score=20.76 Aligned_cols=35 Identities=14% Similarity=0.391 Sum_probs=24.7
Q ss_pred EEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEE
Q 031937 45 DWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQI 79 (150)
Q Consensus 45 dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I 79 (150)
-|.+..+.|.|++.+=|+....|.+.-.+|..+.|
T Consensus 14 tWtD~tG~f~VeA~fv~~~dgkV~L~k~nG~~i~V 48 (70)
T PF03983_consen 14 TWTDRTGKFKVEAEFVGVNDGKVHLHKTNGVKIAV 48 (70)
T ss_dssp EEEBSSS--EEEEEEEEEETTEEEEE-TTS-EEEE
T ss_pred EEEeCCCCEEEEEEEEEeeCCEEEEEecCCeEEEe
Confidence 46677789999999999998899988887744433
No 93
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=32.35 E-value=1.6e+02 Score=21.83 Aligned_cols=47 Identities=11% Similarity=0.115 Sum_probs=24.6
Q ss_pred CCCeEEEEeCCeEEEEEEEEeeec--cCCCceEEE-EeeeeeeEEEEEECCCC
Q 031937 64 KEEVKVEVEDDRVLQISGQRKIEK--EDRNDTWHR-VERSSGAFSRRFRLPEN 113 (150)
Q Consensus 64 ~edi~V~v~~~~~L~I~g~~~~~~--~~~~~~~~~-~e~~~g~f~r~i~LP~~ 113 (150)
++++.|+ +| .|+|++.+.... .-..+.+.. ....+|.|+-++.+|..
T Consensus 31 ~~nv~v~--~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEFS--DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEEE--CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 4555444 54 577776654211 000122221 12467889999998853
No 94
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=32.31 E-value=1.2e+02 Score=18.32 Aligned_cols=46 Identities=24% Similarity=0.460 Sum_probs=29.2
Q ss_pred CCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeCCEEEEEEe
Q 031937 64 KEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVP 133 (150)
Q Consensus 64 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lp 133 (150)
++.++|++.+ +.+.+.|... . .++.||..+. ++...+++.+.+...
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g------------------~--l~~~~~~~v~---v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKG------------------E--LSRPIPPGVK---VEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEET-TEEEEESSSS------------------E--EEEEETTTEE---EEEEEETTSEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECCCE------------------e--EEEECCCCee---EEEEcCCCceEEEEC
Confidence 5678999996 6888887632 2 3466775432 223356777766654
No 95
>PRK14284 chaperone protein DnaJ; Provisional
Probab=32.10 E-value=2.2e+02 Score=23.45 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=34.4
Q ss_pred CCeEEEEe----CCeEEEEEEEEeeecc-C--CCceEEEEeeeeeeEEE-------EEECC--CCcccCCeeEEE-e-CC
Q 031937 65 EEVKVEVE----DDRVLQISGQRKIEKE-D--RNDTWHRVERSSGAFSR-------RFRLP--ENVEVDQIKASM-E-NG 126 (150)
Q Consensus 65 edi~V~v~----~~~~L~I~g~~~~~~~-~--~~~~~~~~e~~~g~f~r-------~i~LP--~~vd~~~i~A~~-~-~G 126 (150)
..|+|.|. +|..|++.|+-..... . .+--+.........|.| .+.|+ +.+--..++... . +|
T Consensus 227 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~ 306 (391)
T PRK14284 227 RSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEG 306 (391)
T ss_pred EEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCc
Confidence 35566655 3456777776543221 1 11122222233333443 33333 334434455543 3 48
Q ss_pred EEEEEEeCcC
Q 031937 127 VLTVTVPKAE 136 (150)
Q Consensus 127 vL~I~lpK~~ 136 (150)
.|+|.+|...
T Consensus 307 ~i~v~Ip~g~ 316 (391)
T PRK14284 307 TCRLTIPEGI 316 (391)
T ss_pred EEEEEECCcc
Confidence 9999999654
No 96
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=31.86 E-value=75 Score=22.39 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.0
Q ss_pred CCCCCCCeEEEEeCCeEEEEEEEEeee
Q 031937 60 PGVKKEEVKVEVEDDRVLQISGQRKIE 86 (150)
Q Consensus 60 PG~~~edi~V~v~~~~~L~I~g~~~~~ 86 (150)
.|+...+++|.+.+| .++++|.....
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCCH
Confidence 578888999999986 99999998654
No 97
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=31.84 E-value=1.5e+02 Score=19.25 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=26.2
Q ss_pred eEEEEEECCCCcccCCeeEEEeCCEEEEEE
Q 031937 103 AFSRRFRLPENVEVDQIKASMENGVLTVTV 132 (150)
Q Consensus 103 ~f~r~i~LP~~vd~~~i~A~~~~GvL~I~l 132 (150)
...-+|+||.++....+...+...-|+|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 455678899999999999999999999987
No 98
>PF13014 KH_3: KH domain
Probab=31.25 E-value=60 Score=17.46 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=12.9
Q ss_pred EEEEeCcCcccCCCceEEecCC
Q 031937 129 TVTVPKAEEAKKSNVRAVQISG 150 (150)
Q Consensus 129 ~I~lpK~~~~~~~~~~~I~I~~ 150 (150)
.|.+|+.. ......+.|.|.|
T Consensus 23 ~I~i~~~~-~~~~~~~~v~I~G 43 (43)
T PF13014_consen 23 KIQIPPEN-EPGSNERVVTITG 43 (43)
T ss_pred EEEECCcc-CCCCCceEEEEEC
Confidence 56777733 4445567777765
No 99
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=29.97 E-value=1.9e+02 Score=20.61 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCC---CCCCeEEEEeCCeEE
Q 031937 50 PEAHVFKADLPGV---KKEEVKVEVEDDRVL 77 (150)
Q Consensus 50 ~~~~~l~~~lPG~---~~edi~V~v~~~~~L 77 (150)
.+.|++.+.+|.+ ....|.|.+..|+.+
T Consensus 48 ~N~yt~~~~aPd~~~~pag~V~v~v~~~g~~ 78 (142)
T PF14545_consen 48 ENPYTLQFKAPDFCLEPAGSVNVRVYCDGVS 78 (142)
T ss_pred ECCEEEEEECchhcCCCCceEEEEEEECCEE
Confidence 4689999999999 999999999965433
No 100
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=28.93 E-value=1.2e+02 Score=19.65 Aligned_cols=36 Identities=8% Similarity=0.220 Sum_probs=24.5
Q ss_pred EEEcCCeEEEEEEc-CCCCCCCeEEEEeCC-eEEEEEEE
Q 031937 46 WKETPEAHVFKADL-PGVKKEEVKVEVEDD-RVLQISGQ 82 (150)
Q Consensus 46 v~e~~~~~~l~~~l-PG~~~edi~V~v~~~-~~L~I~g~ 82 (150)
|.++++.++|.+.+ ||.+++.|. .+.++ ..|.|+-.
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i~-g~~~~~~~Lki~v~ 38 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSIV-GYNEWRKRVEVKIK 38 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCcceec-cccCCCCeEEEEEe
Confidence 35678888899888 898888774 34441 35666644
No 101
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=28.87 E-value=39 Score=22.33 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=12.9
Q ss_pred eEEEeCCEEEEEEeCc
Q 031937 120 KASMENGVLTVTVPKA 135 (150)
Q Consensus 120 ~A~~~~GvL~I~lpK~ 135 (150)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 6678899999998643
No 102
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=28.63 E-value=55 Score=22.00 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=16.8
Q ss_pred CCCCCCCeEEEEeCCeEEEEEEE
Q 031937 60 PGVKKEEVKVEVEDDRVLQISGQ 82 (150)
Q Consensus 60 PG~~~edi~V~v~~~~~L~I~g~ 82 (150)
-|++++++++++-+| .+.++--
T Consensus 18 ~~l~~~ql~vsl~~G-~v~L~nl 39 (118)
T PF12624_consen 18 ENLDKDQLSVSLWNG-EVELRNL 39 (118)
T ss_pred hcCCHHHeeeeeccC-ceEEEcc
Confidence 478899999999876 6666643
No 103
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.32 E-value=33 Score=28.82 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=53.0
Q ss_pred ccceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCc-ccCC
Q 031937 40 VNTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENV-EVDQ 118 (150)
Q Consensus 40 ~~p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v-d~~~ 118 (150)
.+|.+.+...++...|.+..|-.+...+.+..-+ +.+..+ .+.|.-+..+|.-+ +-..
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~--------------------~~pyflrl~~p~~~~~d~~ 60 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFS--------------------AGPYFLRLAGPGMVEDDAR 60 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhc--------------------cchhHHhhcCcchhhhhcc
Confidence 4688889999999999999997777777766654 444433 22344456677554 4444
Q ss_pred eeEEE--eCCEEEEEEeCcC
Q 031937 119 IKASM--ENGVLTVTVPKAE 136 (150)
Q Consensus 119 i~A~~--~~GvL~I~lpK~~ 136 (150)
-.|+| ++|-..|.+||..
T Consensus 61 ~n~s~d~kd~~~~vK~~K~~ 80 (466)
T KOG3247|consen 61 PNASYDAKDGYAHVKVPKFH 80 (466)
T ss_pred ccCccccccceeEEeecCCC
Confidence 55666 6899999999976
No 104
>PRK14297 chaperone protein DnaJ; Provisional
Probab=27.90 E-value=3.4e+02 Score=22.24 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=14.8
Q ss_pred CCcccCCeeEEEeCCEEEEEEeCcC
Q 031937 112 ENVEVDQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 112 ~~vd~~~i~A~~~~GvL~I~lpK~~ 136 (150)
+.+--..++...-+|.++|.+|...
T Consensus 284 eAl~G~~~~i~~ldg~~~v~ip~g~ 308 (380)
T PRK14297 284 KAALGTEIKVPTVDGEVKYEVPAGT 308 (380)
T ss_pred HHhCCCcEEEEcCCCcEEEEECCCc
Confidence 3344344555555677888888643
No 105
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=27.82 E-value=90 Score=18.83 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=19.8
Q ss_pred CeEEEEEEcCCCCCCCe-EEEEeCCeEEEE
Q 031937 51 EAHVFKADLPGVKKEEV-KVEVEDDRVLQI 79 (150)
Q Consensus 51 ~~~~l~~~lPG~~~edi-~V~v~~~~~L~I 79 (150)
+.|.|.+..+|+..... .|.+..+....+
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 67888898899888877 577775544433
No 106
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=27.14 E-value=2.6e+02 Score=20.66 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=28.2
Q ss_pred cCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeec
Q 031937 49 TPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEK 87 (150)
Q Consensus 49 ~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~ 87 (150)
.++.|+=++.||--..+..++++++| +|.|.-++..+.
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~nNg-ILEIri~~~~~~ 171 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATFNNG-ILEIRIRRTEES 171 (177)
T ss_pred cCCceEeeEecCCCccceeeEEEeCc-eEEEEEeecCCC
Confidence 34456678888866677889999985 999997776543
No 107
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=26.36 E-value=1e+02 Score=18.19 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=17.1
Q ss_pred EcCCCCC-CCeEEEEeCCeEEEEE
Q 031937 58 DLPGVKK-EEVKVEVEDDRVLQIS 80 (150)
Q Consensus 58 ~lPG~~~-edi~V~v~~~~~L~I~ 80 (150)
+-.||.. +.|+|++.+| .|+|+
T Consensus 34 ~~aGF~~G~~v~V~v~~g-~lvIt 56 (57)
T PF08845_consen 34 EEAGFTIGDPVKVRVMPG-CLVIT 56 (57)
T ss_pred HHhCCCCCCEEEEEEECC-EEEEe
Confidence 4568865 5899999986 78886
No 108
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=26.30 E-value=1.8e+02 Score=18.50 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=13.2
Q ss_pred CeeEEEeCCEEEEEEeC
Q 031937 118 QIKASMENGVLTVTVPK 134 (150)
Q Consensus 118 ~i~A~~~~GvL~I~lpK 134 (150)
.+.+..+||-.++++-.
T Consensus 69 ~l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 69 TLIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEEECCEEEEEEEE
Confidence 36788899988888754
No 109
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=25.58 E-value=1.6e+02 Score=21.80 Aligned_cols=20 Identities=20% Similarity=0.009 Sum_probs=14.4
Q ss_pred CCeeEEEeCCEEEEEEeCcC
Q 031937 117 DQIKASMENGVLTVTVPKAE 136 (150)
Q Consensus 117 ~~i~A~~~~GvL~I~lpK~~ 136 (150)
-.++-+|++|.|.+.=-+.-
T Consensus 164 Y~l~~~y~~G~l~L~~f~ev 183 (188)
T PRK13726 164 YILILKRENGVTWLDNFGET 183 (188)
T ss_pred EEEEEEEcCCEEEEEEEEec
Confidence 34777889999988765443
No 110
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.36 E-value=2e+02 Score=18.96 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=25.2
Q ss_pred eEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEE
Q 031937 44 VDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISG 81 (150)
Q Consensus 44 ~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g 81 (150)
+.|.+.+| .|....||.+ .|+++.++ ..|.|.+
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~-kkL~v~t 58 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPEN-KKLLVNT 58 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEeccc-ceEEEec
Confidence 67888888 6677889875 57777776 4788887
No 111
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.94 E-value=6.6 Score=24.27 Aligned_cols=13 Identities=54% Similarity=0.601 Sum_probs=10.4
Q ss_pred CeeEEEeCCEEEE
Q 031937 118 QIKASMENGVLTV 130 (150)
Q Consensus 118 ~i~A~~~~GvL~I 130 (150)
=|.|.|+||||.=
T Consensus 6 IIEaiYEnGVfKP 18 (67)
T COG2880 6 IIEAIYENGVLKP 18 (67)
T ss_pred HHHHHHhcccccc
Confidence 3778999999873
No 112
>PRK14291 chaperone protein DnaJ; Provisional
Probab=24.73 E-value=2.6e+02 Score=22.95 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=34.5
Q ss_pred CCeEEEEe----CCeEEEEEEEEeeec---cCCCceEEEEeeeeeeEEE-------EEECC--CCcccCCeeEEEeCC-E
Q 031937 65 EEVKVEVE----DDRVLQISGQRKIEK---EDRNDTWHRVERSSGAFSR-------RFRLP--ENVEVDQIKASMENG-V 127 (150)
Q Consensus 65 edi~V~v~----~~~~L~I~g~~~~~~---~~~~~~~~~~e~~~g~f~r-------~i~LP--~~vd~~~i~A~~~~G-v 127 (150)
..|+|.|. +|..|++.|+-.... ...+--+.........|.| .+.|+ +.+.-..+....-+| .
T Consensus 224 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~ 303 (382)
T PRK14291 224 ETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKK 303 (382)
T ss_pred eEEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCE
Confidence 45566655 345677777644211 1111112222333333443 33333 333334445445577 6
Q ss_pred EEEEEeCcC
Q 031937 128 LTVTVPKAE 136 (150)
Q Consensus 128 L~I~lpK~~ 136 (150)
|+|.+|...
T Consensus 304 l~V~Ip~g~ 312 (382)
T PRK14291 304 EKVKIPPGT 312 (382)
T ss_pred EEEEECCcc
Confidence 899998754
No 113
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=24.66 E-value=43 Score=23.41 Aligned_cols=26 Identities=23% Similarity=0.555 Sum_probs=19.1
Q ss_pred CCCcccCCee---EEE--eCCEEEEEEeCcC
Q 031937 111 PENVEVDQIK---ASM--ENGVLTVTVPKAE 136 (150)
Q Consensus 111 P~~vd~~~i~---A~~--~~GvL~I~lpK~~ 136 (150)
-..+|.++++ -.. +++.|+|++|..+
T Consensus 49 ~~GiDLs~i~~~~i~~d~~~~~i~I~LP~~~ 79 (157)
T PF14014_consen 49 KAGIDLSKIKEEDIEVDEDGKTITITLPPPE 79 (157)
T ss_pred EEEEEhHHCCcceEEEcCCCCEEEEECCCcE
Confidence 3455666666 556 8889999999876
No 114
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=23.69 E-value=66 Score=19.39 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=17.7
Q ss_pred CCCCCeEEEEeCCeEEEEEEEEe
Q 031937 62 VKKEEVKVEVEDDRVLQISGQRK 84 (150)
Q Consensus 62 ~~~edi~V~v~~~~~L~I~g~~~ 84 (150)
|+.+.|.+....| .|.|+|+.=
T Consensus 23 f~~~~I~l~t~~g-~l~I~G~~L 44 (66)
T PF07873_consen 23 FDDEEIRLNTKKG-KLTIKGEGL 44 (66)
T ss_dssp EETTEEEEEETTE-EEEEEEEEE
T ss_pred ECCCEEEEEeCCE-EEEEECceE
Confidence 5778888888874 899999863
No 115
>PRK14281 chaperone protein DnaJ; Provisional
Probab=23.13 E-value=4e+02 Score=22.02 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=34.9
Q ss_pred CeEEEEe----CCeEEEEEEEEeeecc---CCCceEEEEeeeeeeEEE-------EEECC--CCcccCCeeEEEeCCEEE
Q 031937 66 EVKVEVE----DDRVLQISGQRKIEKE---DRNDTWHRVERSSGAFSR-------RFRLP--ENVEVDQIKASMENGVLT 129 (150)
Q Consensus 66 di~V~v~----~~~~L~I~g~~~~~~~---~~~~~~~~~e~~~g~f~r-------~i~LP--~~vd~~~i~A~~~~GvL~ 129 (150)
.++|.|. +|..|++.|+-..... ..+--+...+.....|.| .+.|+ +.+--..+....-||.+.
T Consensus 236 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~ 315 (397)
T PRK14281 236 TVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVK 315 (397)
T ss_pred EEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEE
Confidence 4555554 3356777776443211 111222233333344444 33333 334334455555578888
Q ss_pred EEEeCcC
Q 031937 130 VTVPKAE 136 (150)
Q Consensus 130 I~lpK~~ 136 (150)
|.+|...
T Consensus 316 v~ip~g~ 322 (397)
T PRK14281 316 LTIPAGT 322 (397)
T ss_pred EEeCCcc
Confidence 8888643
No 116
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=22.97 E-value=3.8e+02 Score=21.03 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=24.6
Q ss_pred EEEEeCCeEEEEEEEEeeecc---------CCCceEEE------EeeeeeeEEEEEECCC
Q 031937 68 KVEVEDDRVLQISGQRKIEKE---------DRNDTWHR------VERSSGAFSRRFRLPE 112 (150)
Q Consensus 68 ~V~v~~~~~L~I~g~~~~~~~---------~~~~~~~~------~e~~~g~f~r~i~LP~ 112 (150)
.+.+.+| .|+|++.+..... .....|.. ....+|.|+-++.||.
T Consensus 45 Nv~v~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p 103 (269)
T cd02177 45 NVVISNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGAD 103 (269)
T ss_pred ceEEeCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCC
Confidence 3456676 7899988753211 11111211 1236788999999753
No 117
>PF09985 DUF2223: Domain of unknown function (DUF2223); InterPro: IPR019248 This entry represents various prokaryotic membrane-anchored proteins predicted to be involved in the regulation of amylopullulanase. ; PDB: 1UG9_A 1ULV_A.
Probab=22.94 E-value=3.4e+02 Score=20.71 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=50.4
Q ss_pred cccceeEEEEcCCeEEEEEEcC----------CCCCCCeEEEEeCCe---EEEE-EEEEeeeccCCCceEEEEeeeeeeE
Q 031937 39 FVNTRVDWKETPEAHVFKADLP----------GVKKEEVKVEVEDDR---VLQI-SGQRKIEKEDRNDTWHRVERSSGAF 104 (150)
Q Consensus 39 ~~~p~~dv~e~~~~~~l~~~lP----------G~~~edi~V~v~~~~---~L~I-~g~~~~~~~~~~~~~~~~e~~~g~f 104 (150)
+---.+.|++.++.|++++.+. ||+..-|+|.++... .=.+ .|.... -+..+++...=...++.
T Consensus 31 fDL~~f~v~~~g~~~~f~~~~~~l~NpW~~P~GFS~q~i~IYid~~~gg~~~~~~pG~n~~--~~~~Wd~ai~i~Gw~~~ 108 (228)
T PF09985_consen 31 FDLTSFKVYEDGDNLVFRFTFADLTNPWNGPNGFSLQIIQIYIDTPDGGGTSTLKPGLNVE--FGHPWDYAIRISGWGSY 108 (228)
T ss_dssp T-EEEEEEEEETTEEEEEEEESS---TT---SS-SSEEEEEEEE-S-SS-EE-S-GGG-EE--ESS-ECEEEEEEST--T
T ss_pred cceeEEEEEEcCCEEEEEEEECCCCCCcccccCccceEEEEEEecCCCCcccccCCcccCC--CCCCccEEEEEEeeecc
Confidence 4445788999999999999985 788888888888531 1001 011111 12223332211111112
Q ss_pred EEEEECCCCcc-cCC--eeEEEeCCEEEEEEeCcC
Q 031937 105 SRRFRLPENVE-VDQ--IKASMENGVLTVTVPKAE 136 (150)
Q Consensus 105 ~r~i~LP~~vd-~~~--i~A~~~~GvL~I~lpK~~ 136 (150)
...+..|+.-. ... |.+.-.++.+++.+||..
T Consensus 109 ~~~~~~~~G~~~~~~~~v~~~~~~~~I~~~vpk~~ 143 (228)
T PF09985_consen 109 GNAIYDADGTAISGAPQVSVDPSGNTIIVEVPKKY 143 (228)
T ss_dssp --EEE-TTS-E-EE--EEEEECCCTEEEEEEEGGG
T ss_pred cceEEccCCccCCCcceEEeccCCCEEEEEcCHHH
Confidence 45667776644 223 444446899999999984
No 118
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=22.64 E-value=99 Score=18.73 Aligned_cols=14 Identities=36% Similarity=0.864 Sum_probs=8.5
Q ss_pred EEECCCCcccCCee
Q 031937 107 RFRLPENVEVDQIK 120 (150)
Q Consensus 107 ~i~LP~~vd~~~i~ 120 (150)
++.||...+.+.++
T Consensus 26 sy~lp~ef~~~~L~ 39 (61)
T PF07076_consen 26 SYKLPEEFDFDGLK 39 (61)
T ss_pred EEECCCcccccccC
Confidence 46677776665443
No 119
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=22.07 E-value=3.4e+02 Score=20.17 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=28.3
Q ss_pred CCCCCCeEEEEeCCeEEEEEEEEeeeccCCCc-----eEEE---EeeeeeeEEEEEECCCC
Q 031937 61 GVKKEEVKVEVEDDRVLQISGQRKIEKEDRND-----TWHR---VERSSGAFSRRFRLPEN 113 (150)
Q Consensus 61 G~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~-----~~~~---~e~~~g~f~r~i~LP~~ 113 (150)
-..++++.| .+| .|+|++.+......... .+.. ....+|.|+-++.+|..
T Consensus 34 ~~~~~nv~v--~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 34 TYRPENAYV--EDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred eCCCCCeEE--ECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 345666654 465 79999876543211111 1111 22356888889998854
No 120
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=21.74 E-value=84 Score=19.42 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=10.5
Q ss_pred eCCEEEEEEeCcC
Q 031937 124 ENGVLTVTVPKAE 136 (150)
Q Consensus 124 ~~GvL~I~lpK~~ 136 (150)
.+|.|.+.+||+.
T Consensus 9 ~~g~l~~YvpKKD 21 (67)
T TIGR02934 9 RAGELSAYVPKKD 21 (67)
T ss_pred CCCCEEEEEECCc
Confidence 4577899999987
No 121
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=21.26 E-value=2.9e+02 Score=19.86 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=12.3
Q ss_pred eeeeeeEEEEEECCCC
Q 031937 98 ERSSGAFSRRFRLPEN 113 (150)
Q Consensus 98 e~~~g~f~r~i~LP~~ 113 (150)
...+|.|+-++.+|..
T Consensus 64 ~~~yG~~ear~k~~~~ 79 (210)
T cd00413 64 NYTYGYYEARAKLAGG 79 (210)
T ss_pred eEeeEEEEEEEEcCCC
Confidence 3457889999999864
No 122
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=21.14 E-value=1.3e+02 Score=16.44 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=11.6
Q ss_pred EEEE-cCCeEEEEE-EcCCC
Q 031937 45 DWKE-TPEAHVFKA-DLPGV 62 (150)
Q Consensus 45 dv~e-~~~~~~l~~-~lPG~ 62 (150)
-|.. .++.|.+.+ ++||+
T Consensus 5 ~i~~~~~~~y~~~~pdlpg~ 24 (48)
T PF03681_consen 5 IIEKDEDGGYVAYFPDLPGC 24 (48)
T ss_dssp EEEE-TSSSEEEEETTCCTC
T ss_pred EEEECCCCeEEEEeCCccCh
Confidence 3444 677787777 66765
No 123
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=20.48 E-value=1.1e+02 Score=16.55 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=11.0
Q ss_pred CCCCCCeEEEEeCCeEEEEE
Q 031937 61 GVKKEEVKVEVEDDRVLQIS 80 (150)
Q Consensus 61 G~~~edi~V~v~~~~~L~I~ 80 (150)
...-+.+.|+..+|+.++|+
T Consensus 20 ~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 20 EEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp EEESSEEEEEETTTEEEEEE
T ss_pred EEcCCEEEEEECCCCEEEeC
Confidence 44445566666665555544
No 124
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=20.46 E-value=2.3e+02 Score=21.72 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=11.6
Q ss_pred CCCeEEEEe-CCeEEEEEEEEe
Q 031937 64 KEEVKVEVE-DDRVLQISGQRK 84 (150)
Q Consensus 64 ~edi~V~v~-~~~~L~I~g~~~ 84 (150)
++++. +. +| .|+|++.+.
T Consensus 45 ~~n~~--v~~dG-~L~I~a~~~ 63 (259)
T cd02182 45 TANVQ--LSGNG-TLQITPLRD 63 (259)
T ss_pred CcCEE--EcCCC-eEEEEEEec
Confidence 35544 44 55 799998765
No 125
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=20.15 E-value=1.5e+02 Score=23.60 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=26.7
Q ss_pred CCCCeEEEEeCCeEEEEEEEEeeeccC--CCceEE---EEeeeeeeEEEEEECCC
Q 031937 63 KKEEVKVEVEDDRVLQISGQRKIEKED--RNDTWH---RVERSSGAFSRRFRLPE 112 (150)
Q Consensus 63 ~~edi~V~v~~~~~L~I~g~~~~~~~~--~~~~~~---~~e~~~g~f~r~i~LP~ 112 (150)
.++++ .+.+| .|+|++.+...... ..+.+. .....+|.|+-++.||.
T Consensus 39 ~~~nv--~v~~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~ 90 (295)
T cd02180 39 DPDAV--TTING-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPG 90 (295)
T ss_pred cCcCe--EecCC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCC
Confidence 34555 44566 79999886532110 011111 12346788999999995
No 126
>PRK04517 hypothetical protein; Provisional
Probab=20.07 E-value=3.9e+02 Score=20.12 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=12.4
Q ss_pred CCeeEEE--eCCEEEEEEeCcC
Q 031937 117 DQIKASM--ENGVLTVTVPKAE 136 (150)
Q Consensus 117 ~~i~A~~--~~GvL~I~lpK~~ 136 (150)
+-+-++| .|..|++.+|+..
T Consensus 83 ~p~IvtF~a~~~~~~l~~P~~~ 104 (216)
T PRK04517 83 DVIIATFDAANTELTFDMPKYR 104 (216)
T ss_pred CCEEEEEecCCcEEEEECCCCC
Confidence 3344555 4667777777754
No 127
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=20.05 E-value=2.3e+02 Score=20.57 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=12.8
Q ss_pred CCCeEEEEeCCeEEEEEEEEe
Q 031937 64 KEEVKVEVEDDRVLQISGQRK 84 (150)
Q Consensus 64 ~edi~V~v~~~~~L~I~g~~~ 84 (150)
++++.+...+ +.+.|+|...
T Consensus 130 ~~~i~~d~~~-~~V~V~G~l~ 149 (187)
T PF05309_consen 130 PKSIEVDPET-LTVFVTGTLK 149 (187)
T ss_pred EeEEEEecCC-CEEEEEEEEE
Confidence 3566666565 4777888754
Done!