RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031937
(150 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 196 bits (500), Expect = 6e-66
Identities = 97/158 (61%), Positives = 115/158 (72%), Gaps = 15/158 (9%)
Query: 1 MSMIPSFFGKRRSSVFDPFSLDVWD--------FSSSSQFPQETSAFVNTRVDWKETPEA 52
MS++ RRS+VFDPF+ D + S ET+AF N R+DWKETPEA
Sbjct: 1 MSIV------RRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEA 54
Query: 53 HVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPE 112
HVFKADLPGVKKEEVKVEVED VL +SG+R EKED+ND WHRVERSSG F RRFRL E
Sbjct: 55 HVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLE 114
Query: 113 NVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 150
+ +V+++KA +ENGVLTVTVPKAE K V+A+QISG
Sbjct: 115 DAKVEEVKAGLENGVLTVTVPKAEVKKP-EVKAIQISG 151
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 163 bits (415), Expect = 1e-53
Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 43 RVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSG 102
RVD KE V ADLPG+ +++V+++ +L I G+RK E + + R+ER G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYG 64
Query: 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEA 138
+F RRF LP++ + D I A+ NGVL + +PK A
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIPKRPAA 100
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 151 bits (383), Expect = 2e-48
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 5/116 (4%)
Query: 26 FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKI 85
S + + V VD E V ADL G KE++K V L I +R+I
Sbjct: 9 QKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREI 68
Query: 86 EKEDRNDTWHRVERSSGAFSRRFRLPENVEVD-QIKASMENGVLTVTVPKAEEAKK 140
+ + + + RLP NV D +I ENGVLT+ +P A +
Sbjct: 69 TEPGV----KYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVF 120
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 149 bits (377), Expect = 5e-47
Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 2/139 (1%)
Query: 3 MIPSFFGKRRSSVFDPFSLDVWDFSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGV 62
+ S + + S + E + A LPGV
Sbjct: 18 FFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAWLPGV 77
Query: 63 KKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVE-RSSGAFSRRFRLPENVEVDQIKA 121
KE++ + D L+I +R ++ E R +LP V+ + A
Sbjct: 78 NKEDIILNAVGD-TLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASA 136
Query: 122 SMENGVLTVTVPKAEEAKK 140
ENGVL+V +PKAE + K
Sbjct: 137 KFENGVLSVILPKAESSIK 155
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 83.1 bits (205), Expect = 5e-21
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 1 MSMIPSFFGKRRSS--VFDPFSLDVWDFSSSSQFPQETSAFVNTRVDWKETPEAHVFKAD 58
+ FFG+ +F + + F + S F + + + D
Sbjct: 21 SRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSWFDTGLSEMRLEKDRFSVNLD 80
Query: 59 LPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQ 118
+ EE+KV+V D +++ G+ E+R D + R F R++R+P +V+
Sbjct: 81 VKHFSPEELKVKVLGDV-IEVHGKH----EERQDEHGFISRE---FHRKYRIPADVDPLT 132
Query: 119 IKASM-ENGVLTVTVPKAEEAKKSNVRAVQIS 149
I +S+ +GVLTV P+ + + R + I+
Sbjct: 133 ITSSLSSDGVLTVNGPRKQVSGPE--RTIPIT 162
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 80.1 bits (198), Expect = 7e-21
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 47 KETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSR 106
T + D+ +E+ V+ +D ++I+G+ ++D + R F+R
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTKDGV-VEITGKHA-ARQDEHGYISRC------FTR 54
Query: 107 RFRLPENVEVDQIKASM-ENGVLTVTVPKAE 136
++ LP V+ Q+ +S+ G LTV P +
Sbjct: 55 KYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK 85
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 78.3 bits (193), Expect = 6e-20
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 47 KETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSR 106
P D+ EE+ V+V D +++ + E+R D + R F R
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVVGDH-VEVHARH----EERPDEHGFIARE---FHR 58
Query: 107 RFRLPENVEVDQIKASM-ENGVLTVTVPKAEEAKK 140
R+RLP V+ + +++ GVL++ A
Sbjct: 59 RYRLPPGVDPAAVTSALSPEGVLSIQATPASAQAS 93
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 77.5 bits (191), Expect = 9e-20
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 47 KETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSR 106
+ D+ EE+KV+V V+++ G+ E+R D + R F R
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVL-GDVIEVHGKH----EERQDEHGFISRE---FHR 53
Query: 107 RFRLPENVEVDQIKASM-ENGVLTVTVPKAEEAKK 140
++R+P +V+ I +SM +GVLTV P+ + +
Sbjct: 54 KYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGP 88
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 75.7 bits (186), Expect = 6e-19
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 11/106 (10%)
Query: 47 KETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSR 106
+ + V D+ E++ V+V++D V I G+ ++D S F R
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHGKHNERQDDHG-------YISREFHR 59
Query: 107 RFRLPENVEVDQIKASM-ENGVLTVTVPKAEEA--KKSNVRAVQIS 149
R+RLP NV+ + S+ +G+LT + PK + RA+ +S
Sbjct: 60 RYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 69.5 bits (169), Expect = 5e-15
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 45 DWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAF 104
+ + H+ P ++VKV + ++V + G E++ + F
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVY-VHGVTGKEEKTE----NASHSEHREF 282
Query: 105 SRRFRLPENVEVDQIKASMENGVLTVTVPK 134
+ F PE V+ + +A + +G++ V P
Sbjct: 283 YKAFVTPEVVDASKTQAEIVDGLMVVEAPL 312
Score = 60.6 bits (146), Expect = 7e-12
Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 11/138 (7%)
Query: 1 MSMIPSFFGKRRSSVFDPFSLDVWDFSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLP 60
+ + + F + + +Q P E + K+ ++
Sbjct: 63 FTAMDNAFESVMKEMSAIQPREFHPELEYTQ-PGELDFLKDAYEVGKDGRLHFKVYFNVK 121
Query: 61 GVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIK 120
K EE+ ++ + ++ L + Q+ + D S + R LP +V+ + I+
Sbjct: 122 NFKAEEITIKADKNK-LVVRAQKSVACGDA--------AMSESVGRSIPLPPSVDRNHIQ 172
Query: 121 ASM-ENGVLTVTVPKAEE 137
A++ + VL + P E
Sbjct: 173 ATITTDDVLVIEAPVNEP 190
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 35.2 bits (81), Expect = 0.005
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 23/98 (23%)
Query: 62 VKKEEVKVEVEDDRVLQISGQRKIEKE-DRNDTWHRVER--------------SSGAFSR 106
V ++VK + E +L+ SG R IE E + E +S +
Sbjct: 885 VDDKDVKAKYET-SILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAE 943
Query: 107 RFRL--PENVEVDQIKASMENGV-----LTVTVPKAEE 137
+F+ + V++ +I + E V T+ +PKA
Sbjct: 944 QFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALR 981
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.011
Identities = 19/150 (12%), Positives = 37/150 (24%), Gaps = 59/150 (39%)
Query: 15 VFDPFSLDVWDFSSSSQFPQETSAF-------VNTR----VDW-KETPEAHVFKADL-PG 61
V +V + + +AF + TR D+ H+
Sbjct: 249 VLL----NVQN-------AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 62 VKKEE--------VKVEVED--DRVLQIS-------GQRKIEKEDRNDTWHRV------- 97
+ +E + +D VL + + + D W V
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 98 --ERS-----SGAFSRRFR----LPENVEV 116
E S + + F P + +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 31.8 bits (72), Expect = 0.063
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 29/84 (34%)
Query: 59 LPGVKKEEVKV-EVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPE---NV 114
LPG K++VK+ + + ++ QR R LP
Sbjct: 313 LPGFDKKQVKLTQYGPEVTVEAGDQR----------------------RNIFLPPALSGR 350
Query: 115 EVDQIKASMENGVLTVT-VPKAEE 137
+ A +N L ++ +
Sbjct: 351 PIT--GAKFQNNYLIISFLEHHHH 372
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.46
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 36/64 (56%)
Query: 63 KKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRL--PENVEVDQIK 120
+K+ +K K++ +S +L ++ IK
Sbjct: 18 EKQALK---------------KLQ-------------AS------LKLYADDSAPALAIK 43
Query: 121 ASME 124
A+ME
Sbjct: 44 ATME 47
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response; HET:
ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 27.9 bits (62), Expect = 0.63
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 43 RVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSG 102
R ++ + PE V G+ K+ V ++ + + S ++ ED
Sbjct: 4 RHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQIL---SVVIEVPGEDA------------ 48
Query: 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAK 139
+ + RL + D+ K + + + + + KA+
Sbjct: 49 -YYLQPRLFGKIIPDKCKYEVLSTKIEICLAKADIIT 84
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.73
Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 42/105 (40%)
Query: 47 KETPEAHVFK--ADLPGVKKEEVKVEV-----EDDRVLQISGQ-----------RKIEKE 88
+E + +V K + LP +VE+ + V +SG RK +
Sbjct: 346 QEQVQDYVNKTNSHLP----AGKQVEISLVNGAKNLV--VSGPPQSLYGLNLTLRKAKAP 399
Query: 89 DRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVP 133
D R+ FS R K N L V P
Sbjct: 400 SGLDQ-SRIP-----FSER------------KLKFSNRFLPVASP 426
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 27.6 bits (61), Expect = 0.95
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 41 NTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRV 76
+ DW +T V + V+K +V VE + +
Sbjct: 9 KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKEL 44
>3kg4_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 1.95A {Mannheimia
succiniciproducens}
Length = 235
Score = 25.3 bits (55), Expect = 7.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 120 KASMENGVLTVTVPKAEEAKKS 141
+A ++NGV+ V AEE K+
Sbjct: 207 RAELKNGVIDVPPFYAEEVKRE 228
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 25.5 bits (57), Expect = 8.4
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 56 KADLPGVKKEEVKVEVED------DRVLQISG 81
K DLP + VK ++E+ + + S
Sbjct: 134 KIDLPSADVDRVKKQIEEVLGLDPEEAILASA 165
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 25.5 bits (57), Expect = 8.4
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 56 KADLPGVKKEEVKVEVED------DRVLQISG 81
K DLP E V E+ED ++ S
Sbjct: 132 KIDLPAADPERVAEEIEDIVGIDATDAVRCSA 163
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix,
viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Length = 82
Score = 24.4 bits (52), Expect = 9.8
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 62 VKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRR------FRLPENVE 115
V + + +E Q++ Q +EK + N + ++RS+ +S F E E
Sbjct: 19 VCEAIKTIGIEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFMTTEADE 78
Query: 116 VD 117
D
Sbjct: 79 AD 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.365
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,244,963
Number of extensions: 123461
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 27
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.5 bits)