RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031937
         (150 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score =  132 bits (332), Expect = 5e-41
 Identities = 96/148 (64%), Positives = 112/148 (75%), Gaps = 9/148 (6%)

Query: 11  RRSSVFDPFSLDVWD--------FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGV 62
           RRS+VFDPF+    D          + S    ET+AF N R+DWKETPEAHVFKADLPGV
Sbjct: 4   RRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGV 63

Query: 63  KKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKAS 122
           KKEEVKVEVED  VL +SG+R  EKED+ND WHRVERSSG F RRFRL E+ +V+++KA 
Sbjct: 64  KKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAG 123

Query: 123 MENGVLTVTVPKAEEAKKSNVRAVQISG 150
           +ENGVLTVTVPKAE  KK  V+A+QISG
Sbjct: 124 LENGVLTVTVPKAEV-KKPEVKAIQISG 150


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 92.4 bits (229), Expect = 8e-26
 Identities = 25/97 (25%), Positives = 42/97 (43%)

Query: 44  VDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGA 103
           +   E  +     A LPGV KE++ +    D +   + +  +   +     +        
Sbjct: 13  ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEE 72

Query: 104 FSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKK 140
             R  +LP  V+ +   A  ENGVL+V +PKAE + K
Sbjct: 73  IYRTIKLPATVKEENASAKFENGVLSVILPKAESSIK 109


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 33.8 bits (77), Expect = 0.001
 Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 16/97 (16%)

Query: 43  RVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSG 102
           + DW +T    V    +  V+K +V VE  +  +           +  +   + ++    
Sbjct: 4   KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKEL-------SALVKLPSGEDYNLK---- 52

Query: 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAK 139
                  L   +  +Q    + +  + + + K E  +
Sbjct: 53  -----LELLHPIIPEQSTFKVLSTKIEIKLKKPEAVR 84


>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
           USP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 28.8 bits (64), Expect = 0.13
 Identities = 10/95 (10%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 46  WKETPEAHVFKADLPGVKKEEVKVEVEDDRV-LQISGQRKIEKEDRNDTWHRVERSSGAF 104
           +++ P++ V    +  + ++  +V   +    L    +     +      H        F
Sbjct: 25  YEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTR-----DGNFLRLHPGCGPHTTF 79

Query: 105 SRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAK 139
             + +L   +E +Q         + + + K +  +
Sbjct: 80  RWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQR 114


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0570    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 546,658
Number of extensions: 23868
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 5
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.0 bits)