Query 031938
Match_columns 150
No_of_seqs 162 out of 692
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1591 Prolyl 4-hydroxylase a 99.9 5.7E-23 1.2E-27 173.8 5.4 97 49-149 49-158 (289)
2 PLN00052 prolyl 4-hydroxylase; 99.7 1.8E-17 3.8E-22 141.5 6.9 74 74-149 41-114 (310)
3 smart00702 P4Hc Prolyl 4-hydro 98.7 1.1E-08 2.3E-13 79.0 4.6 61 87-148 1-61 (178)
4 PRK05467 Fe(II)-dependent oxyg 69.7 4.2 9E-05 33.7 2.6 22 89-110 2-23 (226)
5 PHA02708 hypothetical protein; 56.2 12 0.00026 29.0 2.8 29 5-33 2-37 (148)
6 PF07894 DUF1669: Protein of u 47.9 24 0.00053 30.4 3.7 19 92-110 47-65 (284)
7 PF01448 ELM2: ELM2 domain; I 44.7 24 0.00052 22.3 2.5 27 80-111 28-54 (55)
8 PF06624 RAMP4: Ribosome assoc 39.4 16 0.00035 24.6 1.1 22 5-29 36-57 (63)
9 PF13532 2OG-FeII_Oxy_2: 2OG-F 37.0 37 0.0008 25.9 2.9 21 89-109 2-22 (194)
10 PF02529 PetG: Cytochrome B6-F 37.0 69 0.0015 19.6 3.4 23 7-29 7-29 (37)
11 PF06364 DUF1068: Protein of u 32.9 66 0.0014 25.9 3.7 31 7-37 8-38 (176)
12 cd08434 PBP2_GltC_like The sub 32.7 74 0.0016 22.3 3.7 43 53-95 65-107 (195)
13 PF06522 B12D: NADH-ubiquinone 32.2 38 0.00081 23.0 2.0 17 10-26 6-22 (73)
14 PF05721 PhyH: Phytanoyl-CoA d 29.5 63 0.0014 23.8 3.0 21 90-110 7-27 (211)
15 PF14089 KbaA: KinB-signalling 29.4 92 0.002 25.2 4.0 29 7-35 27-55 (180)
16 KOG3491 Predicted membrane pro 29.2 81 0.0018 21.3 3.1 23 4-29 35-57 (65)
17 PF07811 TadE: TadE-like prote 26.5 1.3E+02 0.0028 17.5 3.5 21 9-29 9-29 (43)
18 smart00806 AIP3 Actin interact 26.5 53 0.0011 29.9 2.4 25 25-49 20-45 (426)
19 cd08437 PBP2_MleR The substrat 24.2 90 0.0019 22.2 2.9 51 54-104 68-118 (198)
20 KOG3200 Uncharacterized conser 23.4 97 0.0021 25.5 3.2 27 82-108 7-33 (224)
21 PF12646 DUF3783: Domain of un 22.3 1.2E+02 0.0026 19.5 2.9 24 87-111 1-24 (58)
22 cd08425 PBP2_CynR The C-termin 21.5 92 0.002 22.1 2.5 51 54-104 67-118 (197)
23 cd08788 CARD_NOD2_2_CARD15 Cas 21.0 40 0.00087 24.0 0.5 15 92-106 25-39 (81)
24 PF11303 DUF3105: Protein of u 20.9 2.5E+02 0.0055 21.2 4.9 29 86-114 50-78 (130)
25 PRK11677 hypothetical protein; 20.2 1.1E+02 0.0023 23.6 2.7 18 9-27 3-20 (134)
No 1
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=99.87 E-value=5.7e-23 Score=173.78 Aligned_cols=97 Identities=44% Similarity=0.656 Sum_probs=83.7
Q ss_pred hccccccCCCCCce------------EEcCCCCCceEEecccceEEeccCCcEEEEcccCCHHHHHHHHHHhccCceeeE
Q 031938 49 RQKNGYLQLPRGVT------------FWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVST 116 (150)
Q Consensus 49 ~~~~~y~~lCrG~~------------c~y~~~~~pfL~l~P~K~E~ls~~P~IvlyhnflS~~E~~~Li~lakp~L~rS~ 116 (150)
.....|+..|||+. |++. .+ ||++++|+|+|+|||+|++++||||||++||++|+++|+|+|++++
T Consensus 49 ~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~-~~-~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~st 126 (289)
T KOG1591|consen 49 QEFTVYEQGCRGELPPLTKLTLRRLSCRNR-AG-PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERST 126 (289)
T ss_pred ccccchhhhccCccCccchhHhhhhhcccc-cC-cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhcee
Confidence 56778999999952 4332 22 9999999999999999999999999999999999999999999999
Q ss_pred ee-ecCCCCceecceeeeeccccCCCCCCCCccc
Q 031938 117 VV-DTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQ 149 (150)
Q Consensus 117 V~-d~~tG~~~~s~~RtS~~awL~~~e~~~pvV~ 149 (150)
|+ +..+|....+.+|+|+++|+..++ +++++
T Consensus 127 v~~~~~~~~~~~~~~R~S~~t~l~~~~--~~~~~ 158 (289)
T KOG1591|consen 127 VVADKGTGHSTTSAVRTSSGTFLPDGA--SPVVS 158 (289)
T ss_pred eeccCCcccccceeeEecceeEecCCC--CHHHH
Confidence 95 666688778889999999999854 77764
No 2
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=99.70 E-value=1.8e-17 Score=141.54 Aligned_cols=74 Identities=43% Similarity=0.731 Sum_probs=68.0
Q ss_pred EecccceEEeccCCcEEEEcccCCHHHHHHHHHHhccCceeeEeeecCCCCceecceeeeeccccCCCCCCCCccc
Q 031938 74 RLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMIQ 149 (150)
Q Consensus 74 ~l~P~K~E~ls~~P~IvlyhnflS~~E~~~Li~lakp~L~rS~V~d~~tG~~~~s~~RtS~~awL~~~e~~~pvV~ 149 (150)
.+.|.|+|+|||+|+|++||||||++||++||++|+++|++|+|++..+|+...+++|||+++||.+.+ +|+++
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~--dpvv~ 114 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQ--DPVVS 114 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCC--CHHHH
Confidence 348999999999999999999999999999999999999999999887888788899999999998776 78764
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=98.74 E-value=1.1e-08 Score=79.05 Aligned_cols=61 Identities=31% Similarity=0.390 Sum_probs=50.5
Q ss_pred CcEEEEcccCCHHHHHHHHHHhccCceeeEeeecCCCCceecceeeeeccccCCCCCCCCcc
Q 031938 87 PRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMI 148 (150)
Q Consensus 87 P~IvlyhnflS~~E~~~Li~lakp~L~rS~V~d~~tG~~~~s~~RtS~~awL~~~e~~~pvV 148 (150)
|.|++||||||++||+.|++++++.+.++.+.+...+....+++|+|+.+|+..++ .+|++
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~-~~~~~ 61 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLK-GDLVI 61 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCC-CCHHH
Confidence 88999999999999999999999999999998665443356789999999998763 24543
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=69.72 E-value=4.2 Score=33.67 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEcccCCHHHHHHHHHHhcc
Q 031938 89 ILVLHNFLSMEECDYLRAIARP 110 (150)
Q Consensus 89 IvlyhnflS~~E~~~Li~lakp 110 (150)
|...+||||++||+++++....
T Consensus 2 i~~I~~vLs~eec~~~~~~le~ 23 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDA 23 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHh
Confidence 6789999999999999998753
No 5
>PHA02708 hypothetical protein; Provisional
Probab=56.18 E-value=12 Score=29.03 Aligned_cols=29 Identities=41% Similarity=0.818 Sum_probs=24.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 031938 5 PSMKIVFGLLTFVTFGMIIGALF-------QLAFIR 33 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~m~~~~~~-------q~~f~~ 33 (150)
|+.|.+++-+.||.+|...|+++ -+||++
T Consensus 2 pslRRLl~alalvalgfalgalfrpaap~lPaA~~E 37 (148)
T PHA02708 2 PSLRRLLAALALVALGFALGALFRPAAPALPAAFIE 37 (148)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcCCCCcCcchHHhc
Confidence 67899999999999999999985 466664
No 6
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=47.95 E-value=24 Score=30.37 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=17.0
Q ss_pred EcccCCHHHHHHHHHHhcc
Q 031938 92 LHNFLSMEECDYLRAIARP 110 (150)
Q Consensus 92 yhnflS~~E~~~Li~lakp 110 (150)
..+|||+.|++.|.+-++.
T Consensus 47 ~~~FLS~~Ei~~I~~~~~~ 65 (284)
T PF07894_consen 47 ERDFLSSEEIQYILENAED 65 (284)
T ss_pred CCCCCCHHHHHHHHHhccC
Confidence 4799999999999999974
No 7
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=44.72 E-value=24 Score=22.27 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=22.1
Q ss_pred eEEeccCCcEEEEcccCCHHHHHHHHHHhccC
Q 031938 80 PEVISWSPRILVLHNFLSMEECDYLRAIARPH 111 (150)
Q Consensus 80 ~E~ls~~P~IvlyhnflS~~E~~~Li~lakp~ 111 (150)
-|++-|+| ++.+++.+++.++.+|+.+
T Consensus 28 ~e~lvW~P-----~~~~~d~~l~~yl~~A~s~ 54 (55)
T PF01448_consen 28 EEELVWSP-----NNPLSDRKLEEYLKVAKSS 54 (55)
T ss_pred cceEeECC-----CCCCCHHHHHHHHHHHHhc
Confidence 45667899 4899999999999998753
No 8
>PF06624 RAMP4: Ribosome associated membrane protein RAMP4; InterPro: IPR010580 This entry contains Serp1/Ramp4, which has been shown to interacts with target proteins during their translocation into the lumen of the endoplasmic reticulum. It has also been shown to protect unfolded target proteins against degradation during ER stress. It may facilitate glycosylation of target proteins after termination of ER stress and may modulate the use of N-glycosylation sites on target proteins [, ].
Probab=39.45 E-value=16 Score=24.61 Aligned_cols=22 Identities=41% Similarity=0.769 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Q 031938 5 PSMKIVFGLLTFVTFGMIIGALFQL 29 (150)
Q Consensus 5 ~~~~~~~~~~~~~~~~m~~~~~~q~ 29 (150)
|--.+++||+.||-+| ++++|+
T Consensus 36 pVgp~~L~l~iFVV~G---s~ifqi 57 (63)
T PF06624_consen 36 PVGPWLLGLFIFVVCG---SAIFQI 57 (63)
T ss_pred CcCHHHHhhhheeeEc---HHHHHH
Confidence 4557889999999887 456665
No 9
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=37.00 E-value=37 Score=25.87 Aligned_cols=21 Identities=38% Similarity=0.404 Sum_probs=17.6
Q ss_pred EEEEcccCCHHHHHHHHHHhc
Q 031938 89 ILVLHNFLSMEECDYLRAIAR 109 (150)
Q Consensus 89 IvlyhnflS~~E~~~Li~lak 109 (150)
+.+++||||++|.+.|.+...
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~ 22 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELR 22 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHH
Confidence 468999999999999988876
No 10
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=36.99 E-value=69 Score=19.57 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 031938 7 MKIVFGLLTFVTFGMIIGALFQL 29 (150)
Q Consensus 7 ~~~~~~~~~~~~~~m~~~~~~q~ 29 (150)
.-||+||+...-+|-...|.+|.
T Consensus 7 ~GiVlGli~vtl~Glfv~Ay~QY 29 (37)
T PF02529_consen 7 SGIVLGLIPVTLAGLFVAAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHHHHHHHHHHHHHHH
Confidence 46899999988889988888886
No 11
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=32.90 E-value=66 Score=25.95 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 031938 7 MKIVFGLLTFVTFGMIIGALFQLAFIRKLED 37 (150)
Q Consensus 7 ~~~~~~~~~~~~~~m~~~~~~q~~f~~~~~~ 37 (150)
.|.+++|+++..+|-|.||.+=--|.+.+..
T Consensus 8 lr~~l~llal~~a~yivGP~LYWh~~~~~~~ 38 (176)
T PF06364_consen 8 LRVVLVLLALCLAGYIVGPPLYWHLSEGLAA 38 (176)
T ss_pred HHHHHHHHHHHHHhheeCchHHHHHHHhhhc
Confidence 7999999999999999999998877777654
No 12
>cd08434 PBP2_GltC_like The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold. GltC, a member of the LysR family of bacterial transcriptional factors, activates the expression of gltA gene of glutamate synthase operon and is essential for cell growth in the absence of glutamate. Glutamate synthase is a heterodimeric protein that encoded by gltA and gltB, whose expression is subject to nutritional regulation. GltC also negatively auto-regulates its own expression. This substrate-binding domain has strong homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity,
Probab=32.74 E-value=74 Score=22.26 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=30.9
Q ss_pred cccCCCCCceEEcCCCCCceEEecccceEEeccCCcEEEEccc
Q 031938 53 GYLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNF 95 (150)
Q Consensus 53 ~y~~lCrG~~c~y~~~~~pfL~l~P~K~E~ls~~P~Ivlyhnf 95 (150)
.++.+|+...|.+-..++|.....++..+++...|.|..-.+.
T Consensus 65 ~~~~l~~~~~~~v~~~~~~l~~~~~~~~~~l~~~~~i~~~~~~ 107 (195)
T cd08434 65 EWIPLFTEELVLVVPKDHPLAGRDSVDLAELADEPFVLLSPGF 107 (195)
T ss_pred eEEEeecceEEEEecCCCccccCCccCHHHhcCCceEEecCCc
Confidence 3455677667777677788766667888899989998764443
No 13
>PF06522 B12D: NADH-ubiquinone reductase complex 1 MLRQ subunit; InterPro: IPR010530 The MLRQ subunit of mitochondrial NADH-ubiquinone reductase complex I is nuclear [] and is found in plants [], insects, fungi and higher metazoans []. It appears to act within the membrane and, in mammals, is highly expressed in muscle and neural tissue, indicative of a role in ATP generation [].
Probab=32.17 E-value=38 Score=23.05 Aligned_cols=17 Identities=12% Similarity=0.215 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031938 10 VFGLLTFVTFGMIIGAL 26 (150)
Q Consensus 10 ~~~~~~~~~~~m~~~~~ 26 (150)
|++|+.+|++|+..++.
T Consensus 6 l~PL~~~vg~a~~~a~~ 22 (73)
T PF06522_consen 6 LYPLFVIVGVAVGGATF 22 (73)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 78899999988766554
No 14
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=29.52 E-value=63 Score=23.77 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=17.1
Q ss_pred EEEcccCCHHHHHHHHHHhcc
Q 031938 90 LVLHNFLSMEECDYLRAIARP 110 (150)
Q Consensus 90 vlyhnflS~~E~~~Li~lakp 110 (150)
+++.|+++++|++.|++....
T Consensus 7 vvi~~~l~~~~~~~l~~~~~~ 27 (211)
T PF05721_consen 7 VVIRNVLSPEEVERLREELDR 27 (211)
T ss_dssp EEETTSS-HHHHHHHHHHHHH
T ss_pred EEECCcCCHHHHHHHHHHHHH
Confidence 678999999999999887754
No 15
>PF14089 KbaA: KinB-signalling pathway activation in sporulation
Probab=29.38 E-value=92 Score=25.25 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031938 7 MKIVFGLLTFVTFGMIIGALFQLAFIRKL 35 (150)
Q Consensus 7 ~~~~~~~~~~~~~~m~~~~~~q~~f~~~~ 35 (150)
+.++.+++.+..+||+....||.-|.-=|
T Consensus 27 ~e~~~~~~~~~~~G~~~SviSQMGFFAYL 55 (180)
T PF14089_consen 27 GEILAGLFWLIGVGFTFSVISQMGFFAYL 55 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999886443
No 16
>KOG3491 consensus Predicted membrane protein [Function unknown]
Probab=29.19 E-value=81 Score=21.35 Aligned_cols=23 Identities=43% Similarity=0.704 Sum_probs=17.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Q 031938 4 APSMKIVFGLLTFVTFGMIIGALFQL 29 (150)
Q Consensus 4 ~~~~~~~~~~~~~~~~~m~~~~~~q~ 29 (150)
.|..-+++||..||..|- |++|.
T Consensus 35 ypvgPwLlglFvFVVcGS---a~FqI 57 (65)
T KOG3491|consen 35 YPVGPWLLGLFVFVVCGS---ALFQI 57 (65)
T ss_pred CCcchHHHHHHHHHhhcH---HHHHH
Confidence 366678999999998885 55554
No 17
>PF07811 TadE: TadE-like protein; InterPro: IPR012495 The members of this family are similar to a region of the protein product of the bacterial tadE locus (Q9S4A6 from SWISSPROT). In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces []. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria []. All tad loci but TadA have putative transmembrane regions [], and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.
Probab=26.47 E-value=1.3e+02 Score=17.49 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031938 9 IVFGLLTFVTFGMIIGALFQL 29 (150)
Q Consensus 9 ~~~~~~~~~~~~m~~~~~~q~ 29 (150)
+++|++.++.+|+++......
T Consensus 9 lv~Pvl~~~~~~~~~~~~~~~ 29 (43)
T PF07811_consen 9 LVLPVLLLLLFGIVELGRMFY 29 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577778788888777765544
No 18
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=26.45 E-value=53 Score=29.94 Aligned_cols=25 Identities=36% Similarity=0.572 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhccCcCC-CCcchhhh
Q 031938 25 ALFQLAFIRKLEDSYGT-DFPSFMRR 49 (150)
Q Consensus 25 ~~~q~~f~~~~~~~~~~-~~~~~~~~ 49 (150)
+-+||+|+++..|++|+ |||+.-=.
T Consensus 20 ~~LrLlFvekFayspg~~~fPeIYIq 45 (426)
T smart00806 20 NALRLLFIEKFAYSPGGDDFPDIYIQ 45 (426)
T ss_pred HHHHHHHHHHhccCCCCCCCcceecc
Confidence 45899999999999654 67775444
No 19
>cd08437 PBP2_MleR The substrate binding domain of LysR-type transcriptional regulator MleR which required for malolactic fermentation, contains type 2 periplasmic binidning fold. MleR, a transcription activator of malolactic fermentation system, is found in gram-positive bacteria and belongs to the lysR family of bacterial transcriptional regulators. The mleR gene is required for the expression and induction of malolactic fermentation. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase dom
Probab=24.16 E-value=90 Score=22.25 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=31.4
Q ss_pred ccCCCCCceEEcCCCCCceEEecccceEEeccCCcEEEEcccCCHHHHHHH
Q 031938 54 YLQLPRGVTFWDNDKEAELLRLGYVKPEVISWSPRILVLHNFLSMEECDYL 104 (150)
Q Consensus 54 y~~lCrG~~c~y~~~~~pfL~l~P~K~E~ls~~P~IvlyhnflS~~E~~~L 104 (150)
++.++....|.+-..++|+....++..+++...|.|..-.+.-....++.+
T Consensus 68 ~~~l~~~~~~~~~~~~hpl~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~ 118 (198)
T cd08437 68 SKIIKTQHFMIIVSKDHPLAKAKKVNFADLKKENFILLNEHFVHPKAFDSL 118 (198)
T ss_pred EEEeecceEEEEecCCCcccccCcccHHHHcCCCeEEecccchHHHHHHHH
Confidence 344555555555566777766667888889999998764433223344433
No 20
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.37 E-value=97 Score=25.53 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=22.2
Q ss_pred EeccCCcEEEEcccCCHHHHHHHHHHh
Q 031938 82 VISWSPRILVLHNFLSMEECDYLRAIA 108 (150)
Q Consensus 82 ~ls~~P~IvlyhnflS~~E~~~Li~la 108 (150)
++-..|.++...|||++||-..++...
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshI 33 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHI 33 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHH
Confidence 455678899999999999998887655
No 21
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.31 E-value=1.2e+02 Score=19.53 Aligned_cols=24 Identities=29% Similarity=0.330 Sum_probs=19.5
Q ss_pred CcEEEEcccCCHHHHHHHHHHhccC
Q 031938 87 PRILVLHNFLSMEECDYLRAIARPH 111 (150)
Q Consensus 87 P~IvlyhnflS~~E~~~Li~lakp~ 111 (150)
|.+++|++| +++|++.++...|..
T Consensus 1 e~~ll~~g~-~~~el~~~l~~~r~~ 24 (58)
T PF12646_consen 1 EEFLLFSGF-SGEELDKFLDALRKA 24 (58)
T ss_pred CCEEEECCC-CHHHHHHHHHHHHHc
Confidence 457789988 899999999888654
No 22
>cd08425 PBP2_CynR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator CynR, contains the type 2 periplasmic binding fold. CynR is a LysR-like transcriptional regulator of the cyn operon, which encodes genes that allow cyanate to be used as a sole source of nitrogen. The operon includes three genes in the following order: cynT (cyanate permease), cynS (cyanase), and cynX (a protein of unknown function). CynR negatively regulates its own expression independently of cyanate. CynR binds to DNA and induces bending of DNA in the presence or absence of cyanate, but the amount of bending is decreased by cyanate. The CynR of LysR-type transcriptional regulator family is composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding
Probab=21.53 E-value=92 Score=22.10 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=32.5
Q ss_pred ccCCCCCceEEcCCCCCceEEec-ccceEEeccCCcEEEEcccCCHHHHHHH
Q 031938 54 YLQLPRGVTFWDNDKEAELLRLG-YVKPEVISWSPRILVLHNFLSMEECDYL 104 (150)
Q Consensus 54 y~~lCrG~~c~y~~~~~pfL~l~-P~K~E~ls~~P~IvlyhnflS~~E~~~L 104 (150)
++.+|....|.+-..++|+.... ++..++|...|+|..-.+.......+..
T Consensus 67 ~~~l~~~~~~~v~~~~~pl~~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~ 118 (197)
T cd08425 67 AQPLFDERLALVVGATHPLAQRRTALTLDDLAAEPLALLSPDFATRQHIDRY 118 (197)
T ss_pred EEEeccccEEEEecCCCchhHhcccCCHHHHhcCCcEecCCCccHHHHHHHH
Confidence 34455555566656677766543 5788889999999876665544444433
No 23
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=21.02 E-value=40 Score=23.98 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=12.3
Q ss_pred EcccCCHHHHHHHHH
Q 031938 92 LHNFLSMEECDYLRA 106 (150)
Q Consensus 92 yhnflS~~E~~~Li~ 106 (150)
=+++||++||+.+..
T Consensus 25 ~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 25 TRGFFSSYDCDEIRL 39 (81)
T ss_pred HcCCccHhhcchhhc
Confidence 478899999998875
No 24
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.90 E-value=2.5e+02 Score=21.18 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=24.0
Q ss_pred CCcEEEEcccCCHHHHHHHHHHhccCcee
Q 031938 86 SPRILVLHNFLSMEECDYLRAIARPHLQV 114 (150)
Q Consensus 86 ~P~IvlyhnflS~~E~~~Li~lakp~L~r 114 (150)
=--++.||-=++++|.+.|+++++.-..+
T Consensus 50 GaV~i~Y~p~~~~~~v~~L~~l~~~~~~~ 78 (130)
T PF11303_consen 50 GAVWITYDPCLPPDQVAKLKALAKSCLPY 78 (130)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHhccCCc
Confidence 35678899999999999999999875543
No 25
>PRK11677 hypothetical protein; Provisional
Probab=20.22 E-value=1.1e+02 Score=23.56 Aligned_cols=18 Identities=39% Similarity=0.717 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031938 9 IVFGLLTFVTFGMIIGALF 27 (150)
Q Consensus 9 ~~~~~~~~~~~~m~~~~~~ 27 (150)
+++++++|| +|.|+|.+.
T Consensus 3 W~~a~i~li-vG~iiG~~~ 20 (134)
T PRK11677 3 WEYALIGLV-VGIIIGAVA 20 (134)
T ss_pred HHHHHHHHH-HHHHHHHHH
Confidence 445554444 566666543
Done!