Query 031938
Match_columns 150
No_of_seqs 162 out of 692
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 11:43:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jig_A Prolyl-4 hydroxylase; h 99.6 4.7E-16 1.6E-20 123.5 5.8 74 73-148 6-79 (224)
2 3itq_A Prolyl 4-hydroxylase, a 99.4 2.3E-13 7.7E-18 109.5 3.1 58 78-140 30-88 (216)
3 2hbt_A EGL nine homolog 1; pro 96.2 0.0052 1.8E-07 49.5 5.0 54 87-142 26-84 (247)
4 3dkq_A PKHD-type hydroxylase S 95.9 0.0064 2.2E-07 49.3 4.0 55 81-141 13-68 (243)
5 2lx0_A Membrane fusion protein 46.8 17 0.00058 20.3 2.6 20 9-28 11-30 (32)
6 1q90_G Cytochrome B6F complex 38.0 35 0.0012 20.0 3.1 24 6-29 6-29 (37)
7 2iuw_A Alkylated repair protei 36.0 40 0.0014 26.4 4.2 22 87-108 40-61 (238)
8 1vf5_G Protein PET G; photosyn 27.6 46 0.0016 19.5 2.4 24 6-29 6-29 (37)
9 3dgp_A RNA polymerase II trans 25.4 52 0.0018 22.1 2.8 22 89-110 23-44 (80)
10 1x5v_A PCFK1; inhibitory cysti 24.8 28 0.00095 19.8 1.1 11 56-66 17-27 (34)
No 1
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=99.61 E-value=4.7e-16 Score=123.53 Aligned_cols=74 Identities=42% Similarity=0.673 Sum_probs=66.2
Q ss_pred EEecccceEEeccCCcEEEEcccCCHHHHHHHHHHhccCceeeEeeecCCCCceecceeeeeccccCCCCCCCCcc
Q 031938 73 LRLGYVKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEEKKYPMI 148 (150)
Q Consensus 73 L~l~P~K~E~ls~~P~IvlyhnflS~~E~~~Li~lakp~L~rS~V~d~~tG~~~~s~~RtS~~awL~~~e~~~pvV 148 (150)
..++|.|+|+||++|+|++||||||++||++|+++++++|++|++.+..+|+...+++|+|+++||.+.+ +|++
T Consensus 6 ~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~--~~~~ 79 (224)
T 2jig_A 6 KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGE--DSVI 79 (224)
T ss_dssp -CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTC--SHHH
T ss_pred ccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCC--CHHH
Confidence 3568999999999999999999999999999999999999999999887777777889999999998765 5554
No 2
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=99.35 E-value=2.3e-13 Score=109.47 Aligned_cols=58 Identities=38% Similarity=0.452 Sum_probs=48.0
Q ss_pred cceEEeccCCcEEEEcccCCHHHHHHHHHHhccCceeeEe-eecCCCCceecceeeeeccccCC
Q 031938 78 VKPEVISWSPRILVLHNFLSMEECDYLRAIARPHLQVSTV-VDTKTGKGIKSNVRTSSGMFLSP 140 (150)
Q Consensus 78 ~K~E~ls~~P~IvlyhnflS~~E~~~Li~lakp~L~rS~V-~d~~tG~~~~s~~RtS~~awL~~ 140 (150)
++++++|++|+|++||||||++||++|+++|+++|++|+| .+ ...+++|+|+++||.+
T Consensus 30 v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~s~v~~~-----~~~~~~RtS~~~wl~~ 88 (216)
T 3itq_A 30 IQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSS-----RDVNDIRTSSGAFLDD 88 (216)
T ss_dssp EEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHHHC-------------CCCCGGGTTCEECCC
T ss_pred EEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcccccceeccC-----CccCCcEeeeeEEeCC
Confidence 6899999999999999999999999999999999999999 33 2457899999999976
No 3
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=96.23 E-value=0.0052 Score=49.55 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=41.6
Q ss_pred CcEEEEcccCCHHHHHHHHHHhcc-----CceeeEeeecCCCCceecceeeeeccccCCCC
Q 031938 87 PRILVLHNFLSMEECDYLRAIARP-----HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPEE 142 (150)
Q Consensus 87 P~IvlyhnflS~~E~~~Li~lakp-----~L~rS~V~d~~tG~~~~s~~RtS~~awL~~~e 142 (150)
+-+++++|||+++||+.|++.++. .++++.+.+. +.....++|+++..|+...+
T Consensus 26 ~g~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~a~i~~~--~~~~~~~iR~d~i~wl~~~~ 84 (247)
T 2hbt_A 26 HGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQ--KSDSSKDIRGDKITWIEGKE 84 (247)
T ss_dssp TSEEEESSSSCHHHHHHHHHHHHHHHHTTCSCSCCEEEC--CSSSTTCEECCEEEEECSCS
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhhhhcCCccccccccc--cccccccccccceeeecccc
Confidence 345779999999999999999874 4777777652 12344679999999998764
No 4
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=95.89 E-value=0.0064 Score=49.32 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=36.3
Q ss_pred EEeccCCcEEEEcccCCHHHHHHHHHHhcc-CceeeEeeecCCCCceecceeeeeccccCCC
Q 031938 81 EVISWSPRILVLHNFLSMEECDYLRAIARP-HLQVSTVVDTKTGKGIKSNVRTSSGMFLSPE 141 (150)
Q Consensus 81 E~ls~~P~IvlyhnflS~~E~~~Li~lakp-~L~rS~V~d~~tG~~~~s~~RtS~~awL~~~ 141 (150)
|-+-.++.++++|||||++||++|+++++. ...++.+. +... ..++.++.|+..+
T Consensus 13 ~~~~~~~~i~~i~dvLs~~Ec~~li~~~e~~~~~dg~~t----~g~~--~~~vr~n~~l~~d 68 (243)
T 3dkq_A 13 ENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQT----SGAM--ATTRKRNQQLDKD 68 (243)
T ss_dssp -CCCCBTTBEEECCSSCHHHHHHHHHHHHTSCCEEECCC----SSBS--SCCCEEEEECCTT
T ss_pred cccccCCCEEEECCCCCHHHHHHHHHHHhhCCCccCccc----CCCc--cccceeeeEECCC
Confidence 344568899999999999999999999953 44444332 1111 2345556777643
No 5
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=46.85 E-value=17 Score=20.28 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031938 9 IVFGLLTFVTFGMIIGALFQ 28 (150)
Q Consensus 9 ~~~~~~~~~~~~m~~~~~~q 28 (150)
.+..||||.++|.-.--.+|
T Consensus 11 glvalltflafgfwlfkylq 30 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLFKYLQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45678999999976544443
No 6
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=37.98 E-value=35 Score=19.97 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 031938 6 SMKIVFGLLTFVTFGMIIGALFQL 29 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~m~~~~~~q~ 29 (150)
-.-||+||+...-.|-...|.+|.
T Consensus 6 L~GIVlGlipvtlaGLfv~Ay~Qy 29 (37)
T 1q90_G 6 LCGIVLGLVPVTIAGLFVTAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHH
Confidence 346899999998899999999997
No 7
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=35.98 E-value=40 Score=26.35 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=19.0
Q ss_pred CcEEEEcccCCHHHHHHHHHHh
Q 031938 87 PRILVLHNFLSMEECDYLRAIA 108 (150)
Q Consensus 87 P~IvlyhnflS~~E~~~Li~la 108 (150)
|.+.+++|||+++|.+.|.+.-
T Consensus 40 ~gl~~~~~fl~~~e~~~Ll~~l 61 (238)
T 2iuw_A 40 SRVCLYPGFVDVKEADWILEQL 61 (238)
T ss_dssp EEEEEETTSSCHHHHHHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHHH
Confidence 4589999999999999888765
No 8
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=27.56 E-value=46 Score=19.48 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=18.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 031938 6 SMKIVFGLLTFVTFGMIIGALFQL 29 (150)
Q Consensus 6 ~~~~~~~~~~~~~~~m~~~~~~q~ 29 (150)
-.-||+||+...-+|-...|.+|.
T Consensus 6 L~GIVlGlipvtl~GLfv~Ay~Qy 29 (37)
T 1vf5_G 6 LDGLVLGLVFATLGGLFYAAYQQY 29 (37)
T ss_dssp ---CHHHHHHHHHHHHTHHHHHHT
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHH
Confidence 346899999988889988888886
No 9
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=25.36 E-value=52 Score=22.13 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.9
Q ss_pred EEEEcccCCHHHHHHHHHHhcc
Q 031938 89 ILVLHNFLSMEECDYLRAIARP 110 (150)
Q Consensus 89 IvlyhnflS~~E~~~Li~lakp 110 (150)
-++|.+|.|.+|-+.+.+-|+.
T Consensus 23 g~Ly~~F~s~~efe~~~~yA~e 44 (80)
T 3dgp_A 23 GSLYSDFETSQEYNLLSKYAQD 44 (80)
T ss_dssp EEEEECCSCHHHHHHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHH
Confidence 4789999999999999999974
No 10
>1x5v_A PCFK1; inhibitory cystine knot, toxin; HET: HSL; NMR {Psalmopoeus cambridgei}
Probab=24.81 E-value=28 Score=19.76 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=9.2
Q ss_pred CCCCCceEEcC
Q 031938 56 QLPRGVTFWDN 66 (150)
Q Consensus 56 ~lCrG~~c~y~ 66 (150)
.-|+|+.|+|.
T Consensus 17 ~cc~glqcryg 27 (34)
T 1x5v_A 17 PCCRGLQCRYG 27 (34)
T ss_dssp CBCTTEEEETE
T ss_pred ccceeeeeccC
Confidence 46999999993
Done!