Query 031938
Match_columns 150
No_of_seqs 162 out of 692
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 11:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031938.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031938hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuwa1 b.82.2.10 (A:70-279) A 69.8 2.4 0.00018 30.1 4.2 30 80-109 8-41 (210)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 48.2 10 0.00075 19.2 3.1 19 9-28 1-19 (27)
3 d1q90g_ f.23.26.1 (G:) PetG su 23.9 47 0.0034 17.1 3.2 23 7-29 7-29 (30)
4 d1ls9a_ a.3.1.1 (A:) Cytochrom 19.9 25 0.0018 20.8 1.9 17 92-108 66-82 (91)
5 d1cc5a_ a.3.1.1 (A:) Cytochrom 18.8 26 0.0019 20.7 1.8 15 93-107 65-79 (83)
6 d1wmib1 a.137.13.1 (B:7-67) Hy 17.7 34 0.0025 20.0 2.0 18 94-111 28-45 (61)
7 d1vkra_ c.44.2.1 (A:) PTS syst 17.7 46 0.0034 20.9 2.9 21 88-108 71-91 (97)
8 d1cyja_ a.3.1.1 (A:) Cytochrom 17.6 30 0.0022 20.5 1.9 18 91-108 62-79 (90)
9 d1f1fa_ a.3.1.1 (A:) Cytochrom 17.5 31 0.0023 20.2 1.9 17 92-108 64-80 (88)
10 d2a1xa1 b.82.2.9 (A:43-338) Ph 17.2 42 0.0031 23.7 2.9 20 90-109 25-44 (296)
No 1
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.82 E-value=2.4 Score=30.14 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=23.8
Q ss_pred eEEeccCCc----EEEEcccCCHHHHHHHHHHhc
Q 031938 80 PEVISWSPR----ILVLHNFLSMEECDYLRAIAR 109 (150)
Q Consensus 80 ~E~ls~~P~----IvlyhnflS~~E~~~Li~lak 109 (150)
.-+|+..|. +.+|.|||+++|.+.|.+...
T Consensus 8 ~~~~~~~p~g~~~l~y~p~fLs~~e~~~Ll~~L~ 41 (210)
T d2iuwa1 8 VYEISLSPTGVSRVCLYPGFVDVKEADWILEQLC 41 (210)
T ss_dssp EEEEECCSSSCEEEEEETTSSCHHHHHHHHHHHH
T ss_pred ceEeccCCCCcceEEEECCcCCHHHHHHHHHHHH
Confidence 346777774 899999999999998877543
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=48.15 E-value=10 Score=19.23 Aligned_cols=19 Identities=42% Similarity=0.742 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031938 9 IVFGLLTFVTFGMIIGALFQ 28 (150)
Q Consensus 9 ~~~~~~~~~~~~m~~~~~~q 28 (150)
+|+|| .|||+|-..-|+-|
T Consensus 1 ivlgl-i~~tl~glf~aayq 19 (27)
T d2e74g1 1 LVLGL-VFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHH-HHHHHHHHHHHHHH
T ss_pred Ceeee-hHHHHHHHHHHHHH
Confidence 46665 47888766666655
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=23.90 E-value=47 Score=17.07 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 031938 7 MKIVFGLLTFVTFGMIIGALFQL 29 (150)
Q Consensus 7 ~~~~~~~~~~~~~~m~~~~~~q~ 29 (150)
.-||+||.-.--.|....|.+|.
T Consensus 7 ~GivlGlipiTl~Glfv~AylQY 29 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLFVTAYLQY 29 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHHHHHHHHh
Confidence 35788888777777777777773
No 4
>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Green alga (Cladophora glomerata) [TaxId: 162068]}
Probab=19.92 E-value=25 Score=20.81 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=13.8
Q ss_pred EcccCCHHHHHHHHHHh
Q 031938 92 LHNFLSMEECDYLRAIA 108 (150)
Q Consensus 92 yhnflS~~E~~~Li~la 108 (150)
|.+.||++|++.|.+--
T Consensus 66 ~~~~Lsdeei~~l~aYi 82 (91)
T d1ls9a_ 66 WADRLDEDDIEAVSNYV 82 (91)
T ss_dssp CTTTSCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH
Confidence 56789999999887654
No 5
>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}
Probab=18.84 E-value=26 Score=20.75 Aligned_cols=15 Identities=13% Similarity=-0.230 Sum_probs=12.2
Q ss_pred cccCCHHHHHHHHHH
Q 031938 93 HNFLSMEECDYLRAI 107 (150)
Q Consensus 93 hnflS~~E~~~Li~l 107 (150)
..-|||+|++.|++-
T Consensus 65 ~~~Lsd~ei~~vv~Y 79 (83)
T d1cc5a_ 65 CADCSDDELKAAIGK 79 (83)
T ss_dssp CSSCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 356999999999864
No 6
>d1wmib1 a.137.13.1 (B:7-67) Hypothetical protein PHS014 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=17.71 E-value=34 Score=19.99 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=15.2
Q ss_pred ccCCHHHHHHHHHHhccC
Q 031938 94 NFLSMEECDYLRAIARPH 111 (150)
Q Consensus 94 nflS~~E~~~Li~lakp~ 111 (150)
.-|+++|+..|.++|+..
T Consensus 28 editeeeiaellelarde 45 (61)
T d1wmib1 28 EDITEEEIAELLELARDE 45 (61)
T ss_dssp TTCCHHHHHHHHHHHTCC
T ss_pred ccccHHHHHHHHHHHhcc
Confidence 458999999999999753
No 7
>d1vkra_ c.44.2.1 (A:) PTS system mannitol-specific EIICBA component {Escherichia coli [TaxId: 562]}
Probab=17.68 E-value=46 Score=20.86 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=18.0
Q ss_pred cEEEEcccCCHHHHHHHHHHh
Q 031938 88 RILVLHNFLSMEECDYLRAIA 108 (150)
Q Consensus 88 ~IvlyhnflS~~E~~~Li~la 108 (150)
.++...||+++.|++.+++.-
T Consensus 71 ~vi~v~n~l~~~ei~~l~e~i 91 (97)
T d1vkra_ 71 QHISLTNFLDSGLYTSLTERL 91 (97)
T ss_dssp EEEEESCTTCHHHHHHHHHHH
T ss_pred eEEEEEecCChHHHHHHHHHH
Confidence 477899999999999988754
No 8
>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=17.58 E-value=30 Score=20.45 Aligned_cols=18 Identities=22% Similarity=0.136 Sum_probs=14.3
Q ss_pred EEcccCCHHHHHHHHHHh
Q 031938 91 VLHNFLSMEECDYLRAIA 108 (150)
Q Consensus 91 lyhnflS~~E~~~Li~la 108 (150)
-|.+.|||+|++.|++--
T Consensus 62 ~~~~~Lsd~ei~~v~aYi 79 (90)
T d1cyja_ 62 AWADRLSEEEIQAVAEYV 79 (90)
T ss_dssp CCTTTSCHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHH
Confidence 366789999999887654
No 9
>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]}
Probab=17.49 E-value=31 Score=20.15 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=13.7
Q ss_pred EcccCCHHHHHHHHHHh
Q 031938 92 LHNFLSMEECDYLRAIA 108 (150)
Q Consensus 92 yhnflS~~E~~~Li~la 108 (150)
|.+.||++|++.|++--
T Consensus 64 ~~~~Lsd~ei~~v~aYi 80 (88)
T d1f1fa_ 64 FNGRLSPLQIEDVAAYV 80 (88)
T ss_dssp CTTTSCHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHH
Confidence 56779999999887654
No 10
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.17 E-value=42 Score=23.72 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=16.8
Q ss_pred EEEcccCCHHHHHHHHHHhc
Q 031938 90 LVLHNFLSMEECDYLRAIAR 109 (150)
Q Consensus 90 vlyhnflS~~E~~~Li~lak 109 (150)
+++.|+++++||+.|++...
T Consensus 25 vvi~~~l~~~~~~~l~~~~~ 44 (296)
T d2a1xa1 25 LVIKNLVPDADIQRFRNEFE 44 (296)
T ss_dssp EEETTCSCHHHHHHHHHHHH
T ss_pred EEccCcCCHHHHHHHHHHHH
Confidence 46899999999999977663
Done!