BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031939
         (150 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9H172|ABCG4_HUMAN ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4
           PE=2 SV=2
          Length = 646

 Score = 32.7 bits (73), Expect = 0.85,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 14/95 (14%)

Query: 10  LQALTHVLTSPTNSPP--LHSQLFVS-SQIPCYLNWDYPPVFCTKFRYIHWRW-GLSLFL 65
           LQ  T V   P  + P  L S  FVS   IP YL W       +   Y+ + + G+ L +
Sbjct: 531 LQVATFV--GPVTAIPVLLFSGFFVSFKTIPTYLQWS------SYLSYVRYGFEGVILTI 582

Query: 66  RRVSRFGLPQTSWRSKCPYQQPPPLTLAKGVEEAK 100
             + R  L  T    +CP+++P  +  A  VE+AK
Sbjct: 583 YGMERGDL--TCLEERCPFREPQSILRALDVEDAK 615


>sp|Q3J6L8|YIDC_NITOC Membrane protein insertase YidC OS=Nitrosococcus oceani (strain
           ATCC 19707 / NCIMB 11848) GN=yidC PE=3 SV=1
          Length = 545

 Score = 31.2 bits (69), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 56  HWRWGLSL--FLRRVSRFGLPQTSWRSKCPYQQPPPLTLAKGVEEAKWGDEEKREYVRKR 113
           +W W + L  F+ ++  F L QTS+RS    ++  P  LA  ++E    D +K       
Sbjct: 360 NWGWAIVLLTFVVKLVFFKLSQTSYRSMARMRKLQPRLLA--LKERYGDDRQKVGQAMME 417

Query: 114 LQRKRLGCHVNPL---IPILVPNLLLFSLFFW 142
           L RK     VNP+   +PI+V  + +F   +W
Sbjct: 418 LYRKE---KVNPMGGCLPIVV-QIPVFIALYW 445


>sp|Q6B4M5|PAR6A_RAT Partitioning defective 6 homolog alpha OS=Rattus norvegicus
           GN=Pard6a PE=2 SV=2
          Length = 346

 Score = 30.0 bits (66), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 54  YIHWRWGLSLFLRRVSRFG--LPQTSWRS--KCPYQQPPPLTLAKGVEEAKWGDEEKREY 109
            +H   GL + L      G  LP T+  S  +     PPPL L   V++   GD     +
Sbjct: 48  VVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASGPPPLRLL--VQKRAEGDSSGLAF 105

Query: 110 VRKRLQRKRLGCHVNPLIPILVPNLLLFSL 139
               LQR++ G  + P+ P+     LL SL
Sbjct: 106 ASNSLQRRKKGLLLRPVAPLRTRPPLLISL 135


>sp|Q9Z101|PAR6A_MOUSE Partitioning defective 6 homolog alpha OS=Mus musculus GN=Pard6a
           PE=1 SV=2
          Length = 346

 Score = 30.0 bits (66), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 54  YIHWRWGLSLFLRRVSRFG--LPQTSWRS--KCPYQQPPPLTLAKGVEEAKWGDEEKREY 109
            +H   GL + L      G  LP T+  S  +     PPPL L   V++   GD     +
Sbjct: 48  VVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASGPPPLRLL--VQKRAEGDSSGLAF 105

Query: 110 VRKRLQRKRLGCHVNPLIPILVPNLLLFSL 139
               LQR++ G  + P+ P+     LL SL
Sbjct: 106 ASNSLQRRKKGLLLRPVAPLRTRPPLLISL 135


>sp|Q2EJA0|YAP1_RAT Yorkie homolog OS=Rattus norvegicus GN=Yap1 PE=2 SV=1
          Length = 469

 Score = 29.6 bits (65), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 4   TTWEQKLQALTHVLTSPTN-SPPLHSQLFVSSQIPCYLNWDYPPVFCTKFRYIHWRWGLS 62
           TTW+   +A+   L  PT+ SP +   L  S+  P    W+       +  YI+ +   +
Sbjct: 179 TTWQDPRKAMLSQLNVPTSASPAVPQTLMNSASGPLPDGWEQAMTQDGEVYYINHKNKTT 238

Query: 63  LFL--RRVSRFGLPQTSWRSKCPYQQPPPL 90
            +L  R   RF + Q   +S  P +QPPPL
Sbjct: 239 SWLDPRLDPRFAMNQRITQS-APVKQPPPL 267


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.482 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,392,265
Number of Sequences: 539616
Number of extensions: 2527118
Number of successful extensions: 6298
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6296
Number of HSP's gapped (non-prelim): 7
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)