Query 031939
Match_columns 150
No_of_seqs 11 out of 13
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 07:26:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04583 Baculo_p74: Baculovir 56.4 5.9 0.00013 34.1 1.2 13 137-149 119-131 (249)
2 PF12286 DUF3622: Protein of u 43.4 11 0.00025 27.3 0.8 18 100-117 48-65 (71)
3 PF15496 DUF4646: Domain of un 40.0 42 0.00092 25.1 3.5 60 24-84 10-78 (123)
4 KOG1412 Aspartate aminotransfe 39.8 7.8 0.00017 35.6 -0.6 52 8-63 260-318 (410)
5 TIGR03691 20S_bact_alpha prote 36.3 21 0.00045 28.8 1.4 14 104-117 14-27 (228)
6 PF10319 7TM_GPCR_Srj: Serpent 27.5 43 0.00094 29.4 2.0 20 98-117 152-171 (310)
7 PF12348 CLASP_N: CLASP N term 26.7 47 0.001 25.0 1.8 15 2-16 17-31 (228)
8 KOG4848 Extracellular matrix-a 26.6 40 0.00088 29.0 1.6 39 89-128 53-91 (225)
9 PF10199 Adaptin_binding: Alph 26.3 48 0.001 24.0 1.8 14 100-113 121-134 (137)
10 PF08350 DUF1724: Domain of un 20.2 39 0.00085 22.8 0.3 15 100-115 48-62 (64)
11 PLN02291 phospho-2-dehydro-3-d 20.2 81 0.0018 29.6 2.4 31 75-117 22-52 (474)
No 1
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=56.41 E-value=5.9 Score=34.08 Aligned_cols=13 Identities=54% Similarity=1.270 Sum_probs=10.8
Q ss_pred HHHHhcCCCCCCC
Q 031939 137 FSLFFWDPFAANG 149 (150)
Q Consensus 137 ~s~~~w~p~~~~~ 149 (150)
+.+||||||.||.
T Consensus 119 lvL~~WDPfGYnN 131 (249)
T PF04583_consen 119 LVLMFWDPFGYNN 131 (249)
T ss_pred HHHHhcCcccccc
Confidence 4678999999974
No 2
>PF12286 DUF3622: Protein of unknown function (DUF3622); InterPro: IPR022069 This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.
Probab=43.42 E-value=11 Score=27.33 Aligned_cols=18 Identities=22% Similarity=0.820 Sum_probs=15.4
Q ss_pred ccchHHHHHHHHHHHhhc
Q 031939 100 KWGDEEKREYVRKRLQRK 117 (150)
Q Consensus 100 ~Wg~eerr~Y~rkrl~R~ 117 (150)
.||++|+.+|+...+-|.
T Consensus 48 ~W~e~eL~~fl~n~~~RN 65 (71)
T PF12286_consen 48 AWGEKELKSFLENQAERN 65 (71)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999999886553
No 3
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=40.04 E-value=42 Score=25.14 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=48.6
Q ss_pred CcchhhhhhhcccCCCC-----CCCC---CcccccCCchhHHHHH-HHHHHHHHhhcCCCCCCcccCCCC
Q 031939 24 PPLHSQLFVSSQIPCYL-----NWDY---PPVFCTKFRYIHWRWG-LSLFLRRVSRFGLPQTSWRSKCPY 84 (150)
Q Consensus 24 PsLhSQ~Fias~iPCy~-----~wdY---PP~lC~~~p~~ll~W~-~s~FLkRv~r~glP~tSWRSkCPf 84 (150)
|+|=.+-|-..+||+.- +-.| |+.|.+-+ -....|. |.=.|...++++-.++.+++++|=
T Consensus 10 ~~lsy~~f~p~~I~s~s~~l~~gFp~~~~P~~l~~~D-Vs~eDW~~F~~dl~~aa~ls~~~~~~~~~~~~ 78 (123)
T PF15496_consen 10 PSLSYSPFPPFQIPSRSDSLSSGFPYLYPPPPLASHD-VSEEDWTRFLNDLSEAASLSPSQSIVAGVGPI 78 (123)
T ss_pred CCCCCCCCCCEEEeecCCccccCCCCcCCCchhhhcC-CCHHHHHHHHHHHHHHHhcCcccceeeeeccc
Confidence 45555677888888873 5667 88888766 6778899 899999999999999889999875
No 4
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=39.80 E-value=7.8 Score=35.56 Aligned_cols=52 Identities=25% Similarity=0.472 Sum_probs=42.3
Q ss_pred HHHHHHHHhhcCCCCCCcchhhhhhhcccCCCCCCCCCcccccC-------CchhHHHHHHHH
Q 031939 8 QKLQALTHVLTSPTNSPPLHSQLFVSSQIPCYLNWDYPPVFCTK-------FRYIHWRWGLSL 63 (150)
Q Consensus 8 qr~qALTHiLT~Pt~sPsLhSQ~Fias~iPCy~~wdYPP~lC~~-------~p~~ll~W~~s~ 63 (150)
+|+--||-+.-+|++.+-++||+=+.-++ +|++||-+--. .|.+-.+|.-|+
T Consensus 260 eRvGnltvv~~n~a~i~~v~SQl~lviR~----~~SNPPAyGArIV~kvL~tP~lre~W~~si 318 (410)
T KOG1412|consen 260 ERVGNLTVVVNNPAVIAGVKSQLTLVIRS----NWSNPPAYGARIVHKVLSTPELREQWIQSI 318 (410)
T ss_pred ccccceEEEecChhHHHHHHHHHHHHHhh----ccCCCcchhhHHHHHHhcCHHHHHHHHHHH
Confidence 56777888999999999999999888765 89999965321 389999998664
No 5
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=36.26 E-value=21 Score=28.85 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhc
Q 031939 104 EEKREYVRKRLQRK 117 (150)
Q Consensus 104 eerr~Y~rkrl~R~ 117 (150)
.+|||||.|-+.+|
T Consensus 14 ~~~~EYA~kav~~g 27 (228)
T TIGR03691 14 RDRAELARKGIARG 27 (228)
T ss_pred hhHHHHHHHHHHcC
Confidence 58999999998776
No 6
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=27.45 E-value=43 Score=29.40 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=16.8
Q ss_pred ccccchHHHHHHHHHHHhhc
Q 031939 98 EAKWGDEEKREYVRKRLQRK 117 (150)
Q Consensus 98 ea~Wg~eerr~Y~rkrl~R~ 117 (150)
-.-|+|+|+|+|+|+-.++.
T Consensus 152 ~~~~ad~EiR~YIre~F~e~ 171 (310)
T PF10319_consen 152 FCMYADDEIRDYIRESFREV 171 (310)
T ss_pred hhcCCCHHHHHHHHHHHHHH
Confidence 34679999999999997776
No 7
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=26.73 E-value=47 Score=24.99 Aligned_cols=15 Identities=27% Similarity=0.871 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHHHh
Q 031939 2 DDTTWEQKLQALTHV 16 (150)
Q Consensus 2 e~~TW~qr~qALTHi 16 (150)
.+..|+.|.+||+.+
T Consensus 17 ~~~~W~~r~~al~~L 31 (228)
T PF12348_consen 17 SESDWEERVEALQKL 31 (228)
T ss_dssp T-SSHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHH
Confidence 467899999998864
No 8
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=26.62 E-value=40 Score=28.98 Aligned_cols=39 Identities=31% Similarity=0.504 Sum_probs=31.3
Q ss_pred cccccccccccccchHHHHHHHHHHHhhcccccccCCccc
Q 031939 89 PLTLAKGVEEAKWGDEEKREYVRKRLQRKRLGCHVNPLIP 128 (150)
Q Consensus 89 Plv~a~gvEea~Wg~eerr~Y~rkrl~R~~l~~~v~P~ip 128 (150)
-.|++.|+-+-+|.- +++.|+|+|..|--..++|+|-+.
T Consensus 53 ~~il~~~~pP~~w~~-~~~~y~r~~FgrYGa~SgV~p~~l 91 (225)
T KOG4848|consen 53 RIILAGGMPPVQWDS-ERRAYRRERFGRYGAKSGVPPEEL 91 (225)
T ss_pred HHHHcCCCCChhhhh-ccHHHHHHHHHhhccccCCChhhh
Confidence 357777888888965 459999999888779999999763
No 9
>PF10199 Adaptin_binding: Alpha and gamma adaptin binding protein p34; InterPro: IPR019341 p34 is a protein involved in membrane trafficking. It is known to interact with both alpha and gamma adaptin []. It has been speculated that p34 may play a chaperone role such as preventing the soluble adaptors from co-assembling with soluble clathrin, or helping to remove the adaptors from the coated vesicle. It may also aid in the recruitment of soluble adaptors onto the membrane [].
Probab=26.34 E-value=48 Score=24.01 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=11.8
Q ss_pred ccchHHHHHHHHHH
Q 031939 100 KWGDEEKREYVRKR 113 (150)
Q Consensus 100 ~Wg~eerr~Y~rkr 113 (150)
...++|||+||.|=
T Consensus 121 ~lpd~qRr~~Aakv 134 (137)
T PF10199_consen 121 SLPDEQRRRMAAKV 134 (137)
T ss_pred cCCHHHHHHHHHHH
Confidence 57899999999874
No 10
>PF08350 DUF1724: Domain of unknown function (DUF1724); InterPro: IPR013561 This domain of unknown function has so far only been found at the C terminus of archaean proteins, including several transcriptional regulators of the ArsR family (see IPR001845 from INTERPRO).
Probab=20.23 E-value=39 Score=22.83 Aligned_cols=15 Identities=53% Similarity=1.010 Sum_probs=10.8
Q ss_pred ccchHHHHHHHHHHHh
Q 031939 100 KWGDEEKREYVRKRLQ 115 (150)
Q Consensus 100 ~Wg~eerr~Y~rkrl~ 115 (150)
+||+ |+=+|-+++.+
T Consensus 48 ~WG~-eLF~yY~~~s~ 62 (64)
T PF08350_consen 48 KWGE-ELFEYYKKRSE 62 (64)
T ss_pred HHHH-HHHHHHHHhCc
Confidence 9996 57777777654
No 11
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=20.21 E-value=81 Score=29.64 Aligned_cols=31 Identities=35% Similarity=0.431 Sum_probs=23.7
Q ss_pred CCCcccCCCCCCCCcccccccccccccchHHHHHHHHHHHhhc
Q 031939 75 QTSWRSKCPYQQPPPLTLAKGVEEAKWGDEEKREYVRKRLQRK 117 (150)
Q Consensus 75 ~tSWRSkCPfq~PPPlv~a~gvEea~Wg~eerr~Y~rkrl~R~ 117 (150)
++|||++==-| +-.|.|++.-+.|.++|++-
T Consensus 22 p~sWr~~pa~Q------------qP~y~D~~~l~~v~~~L~~~ 52 (474)
T PLN02291 22 PDSWRSKKALQ------------LPEYPDQAELEEVLKTLEAF 52 (474)
T ss_pred hhhhhcCcccc------------CCCCCCHHHHHHHHHHHhcC
Confidence 78999993333 34699999999999997664
Done!