Query 031939
Match_columns 150
No_of_seqs 11 out of 13
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 11:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031939.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031939hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2otma1 d.79.1.1 (A:2-153) Hyp 62.6 1.3 9.4E-05 30.1 1.3 37 4-40 2-45 (152)
2 d1t61c1 d.169.1.6 (C:6-114) No 28.1 8.4 0.00062 26.6 0.9 15 26-43 4-19 (109)
3 d1t61a1 d.169.1.6 (A:6-114) No 27.8 6.9 0.0005 27.0 0.4 14 26-42 5-19 (109)
4 d1n0ua4 d.58.11.1 (A:482-560) 27.2 23 0.0017 21.8 2.9 27 91-117 7-33 (79)
5 d1t61a2 d.169.1.6 (A:115-225) 26.4 8.9 0.00064 26.5 0.7 14 26-42 6-20 (111)
6 d1rzsa_ a.35.1.2 (A:) cro p22 25.3 14 0.001 23.4 1.5 30 95-126 21-55 (61)
7 d1wa5c_ a.118.1.1 (C:) Exporti 17.9 73 0.0053 24.1 4.5 48 49-116 45-92 (959)
8 d1ldja2 a.118.17.1 (A:17-410) 14.3 34 0.0025 25.3 1.7 33 3-35 2-34 (394)
9 d1vl2a1 c.26.2.1 (A:2-169) Arg 12.2 38 0.0027 19.9 1.2 11 103-113 154-164 (168)
10 d2bv3a4 d.58.11.1 (A:404-478) 10.7 36 0.0026 20.8 0.7 29 88-116 2-30 (75)
No 1
>d2otma1 d.79.1.1 (A:2-153) Hypothetical protein SO1960 {Shewanella oneidensis [TaxId: 70863]}
Probab=62.56 E-value=1.3 Score=30.12 Aligned_cols=37 Identities=24% Similarity=0.142 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHhhcCCCCCCcchhh-------hhhhcccCCCC
Q 031939 4 TTWEQKLQALTHVLTSPTNSPPLHSQ-------LFVSSQIPCYL 40 (150)
Q Consensus 4 ~TW~qr~qALTHiLT~Pt~sPsLhSQ-------~Fias~iPCy~ 40 (150)
+|+|+|++.|-.-|=.+-..-.-||| +|||-|||=..
T Consensus 2 ~~~e~~l~~lgi~lP~~p~p~g~Ys~av~~g~~iyvSGQip~~~ 45 (152)
T d2otma1 2 NTPESRLVAAGLELPEVAAALGNYEPYSIVGSQLMTSGQFPYLQ 45 (152)
T ss_dssp CCHHHHHHHTTCCCCCCCCCSSSSCSEEEETTEEEECCBCCEET
T ss_pred CCHHHHHHHcCCCCCCCCCCCCcccceEEECCEEEEecceeecC
Confidence 57899999998776554444445887 68999998444
No 2
>d1t61c1 d.169.1.6 (C:6-114) Noncollagenous (NC1) domain of collagen IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=28.08 E-value=8.4 Score=26.59 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=9.7
Q ss_pred chhhhhhhcccC-CCCCCC
Q 031939 26 LHSQLFVSSQIP-CYLNWD 43 (150)
Q Consensus 26 LhSQ~Fias~iP-Cy~~wd 43 (150)
.|||- ..|| |+.||.
T Consensus 4 ~HSQt---~~iP~CP~g~~ 19 (109)
T d1t61c1 4 KHSQT---DQEPMCPVGMN 19 (109)
T ss_dssp EECSS---SSCCCCCTTCC
T ss_pred EecCC---CCCCCCCCCCc
Confidence 58883 4555 777764
No 3
>d1t61a1 d.169.1.6 (A:6-114) Noncollagenous (NC1) domain of collagen IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.80 E-value=6.9 Score=27.01 Aligned_cols=14 Identities=36% Similarity=0.397 Sum_probs=9.3
Q ss_pred chhhhhhhcccC-CCCCC
Q 031939 26 LHSQLFVSSQIP-CYLNW 42 (150)
Q Consensus 26 LhSQ~Fias~iP-Cy~~w 42 (150)
.|||- ..|| |+.||
T Consensus 5 ~HSQt---~~iP~CP~g~ 19 (109)
T d1t61a1 5 RHSQT---TDDPQCPPGT 19 (109)
T ss_dssp EECSS---SSCCCCCTTC
T ss_pred EecCC---CCCCCCCCCC
Confidence 58884 5565 77776
No 4
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.17 E-value=23 Score=21.80 Aligned_cols=27 Identities=26% Similarity=0.124 Sum_probs=23.2
Q ss_pred cccccccccccchHHHHHHHHHHHhhc
Q 031939 91 TLAKGVEEAKWGDEEKREYVRKRLQRK 117 (150)
Q Consensus 91 v~a~gvEea~Wg~eerr~Y~rkrl~R~ 117 (150)
|...+||+...+|+++-.-|=+++.+-
T Consensus 7 v~~~aiep~~~~d~~kL~~aL~kl~~e 33 (79)
T d1n0ua4 7 VVQVAVEVKNANDLPKLVEGLKRLSKS 33 (79)
T ss_dssp CEEEEEEESSGGGHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHh
Confidence 478899999999999999988887654
No 5
>d1t61a2 d.169.1.6 (A:115-225) Noncollagenous (NC1) domain of collagen IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.38 E-value=8.9 Score=26.55 Aligned_cols=14 Identities=57% Similarity=1.151 Sum_probs=8.3
Q ss_pred chhhhhhhcccC-CCCCC
Q 031939 26 LHSQLFVSSQIP-CYLNW 42 (150)
Q Consensus 26 LhSQ~Fias~iP-Cy~~w 42 (150)
.||| +..|| |+.||
T Consensus 6 ~HSQ---t~~iP~CP~g~ 20 (111)
T d1t61a2 6 VHSQ---TIQIPQCPTGW 20 (111)
T ss_dssp EECS---SSSCCCCCTTC
T ss_pred EecC---CCCCCCCCCCc
Confidence 5777 44554 66665
No 6
>d1rzsa_ a.35.1.2 (A:) cro p22 {Bacteriophage p22 [TaxId: 10754]}
Probab=25.29 E-value=14 Score=23.38 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=24.0
Q ss_pred ccccc---ccchH--HHHHHHHHHHhhcccccccCCc
Q 031939 95 GVEEA---KWGDE--EKREYVRKRLQRKRLGCHVNPL 126 (150)
Q Consensus 95 gvEea---~Wg~e--err~Y~rkrl~R~~l~~~v~P~ 126 (150)
||-.+ ||||+ |.|+|=-.++-+|.|.. +|.
T Consensus 21 gis~~AVsqWGe~VPe~RA~~ie~~T~G~Lk~--~~~ 55 (61)
T d1rzsa_ 21 GISDAAVSQWKEVIPEKDAYRLEIVTAGALKY--QEN 55 (61)
T ss_dssp TCCHHHHHHCCSBCCHHHHHHHHHHTTSCSCC--CSS
T ss_pred CCCHHHHHHHhccCcHHHHHHHHHHhCCcccc--CHH
Confidence 44444 99985 99999999999999987 554
No 7
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.95 E-value=73 Score=24.13 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=30.9
Q ss_pred ccCCchhHHHHHHHHHHHHHhhcCCCCCCcccCCCCCCCCcccccccccccccchHHHHHHHHHHHhh
Q 031939 49 CTKFRYIHWRWGLSLFLRRVSRFGLPQTSWRSKCPYQQPPPLTLAKGVEEAKWGDEEKREYVRKRLQR 116 (150)
Q Consensus 49 C~~~p~~ll~W~~s~FLkRv~r~glP~tSWRSkCPfq~PPPlv~a~gvEea~Wg~eerr~Y~rkrl~R 116 (150)
+..+...-.||.++++||+..+ ..|+++.... .. .+|-|++.|.++-.
T Consensus 45 ~~~~~~~~iR~~A~i~lKn~i~-----~~W~~~~~~~--------------~i-~~e~k~~Ik~~ll~ 92 (959)
T d1wa5c_ 45 ASTNLPLSTRLAGALFFKNFIK-----RKWVDENGNH--------------LL-PANNVELIKKEIVP 92 (959)
T ss_dssp HCTTSCHHHHHHHHHHHHHHHH-----HHSBCSSSCB--------------SS-CHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHH-----HhcccccccC--------------CC-CHHHHHHHHHHHHH
Confidence 3333345679999999999886 4688764321 11 24567777777543
No 8
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.32 E-value=34 Score=25.27 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=27.2
Q ss_pred cchHHHHHHHHHHhhcCCCCCCcchhhhhhhcc
Q 031939 3 DTTWEQKLQALTHVLTSPTNSPPLHSQLFVSSQ 35 (150)
Q Consensus 3 ~~TW~qr~qALTHiLT~Pt~sPsLhSQ~Fias~ 35 (150)
|.||+.=-+|+.+|+++-..+++-|.++|=+.-
T Consensus 2 d~~W~~L~~ai~~I~~~~~~~~~~~~~lY~~vy 34 (394)
T d1ldja2 2 DQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVY 34 (394)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 579999999999999987778887888875543
No 9
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=12.21 E-value=38 Score=19.88 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=8.5
Q ss_pred hHHHHHHHHHH
Q 031939 103 DEEKREYVRKR 113 (150)
Q Consensus 103 ~eerr~Y~rkr 113 (150)
.+|.++||+++
T Consensus 154 k~ei~~ya~~~ 164 (168)
T d1vl2a1 154 RTDLINYAMEK 164 (168)
T ss_dssp -CHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 56889999985
No 10
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}
Probab=10.72 E-value=36 Score=20.79 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=0.0
Q ss_pred CcccccccccccccchHHHHHHHHHHHhh
Q 031939 88 PPLTLAKGVEEAKWGDEEKREYVRKRLQR 116 (150)
Q Consensus 88 PPlv~a~gvEea~Wg~eerr~Y~rkrl~R 116 (150)
|+=|.+.+||+...+|+++-.-|=+||.+
T Consensus 2 P~Pv~~~ai~p~~~~D~~kl~~aL~~L~~ 30 (75)
T d2bv3a4 2 PEPVIDVAIEPKTKADQEKLSQALARLAE 30 (75)
T ss_dssp CCCCEECBCCC------------------
T ss_pred CCCcEEEEEEECCHhHHHHHHHHHHHHHh
Done!