BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031940
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYI|A Chain A, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|G Chain G, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2J0Q|C Chain C, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|F Chain F, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|C Chain C, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
pdb|3EX7|A Chain A, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|E Chain E, The Crystal Structure Of Ejc In Its Transition State
pdb|2XB2|C Chain C, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|Y Chain Y, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 146
Score = 249 bits (636), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 117/145 (80%), Positives = 129/145 (88%)
Query: 6 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECR 65
+ +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++ +V+ E +
Sbjct: 2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELK 61
Query: 66 RIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRI 125
RII +SEI KEDD WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV SKDPEGLR+
Sbjct: 62 RIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRV 121
Query: 126 FYYLVQDLKCFVFSLISLHFKIKPI 150
FYYLVQDLKC VFSLI LHFKIKPI
Sbjct: 122 FYYLVQDLKCLVFSLIGLHFKIKPI 146
>pdb|1OO0|A Chain A, Crystal Structure Of The Drosophila Mago Nashi-Y14 Complex
pdb|1RK8|B Chain B, Structure Of The Cytosolic Protein Pym Bound To The Mago-
Y14 Core Of The Exon Junction Complex
pdb|2X1G|B Chain B, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|D Chain D, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 147
Score = 248 bits (633), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 119/143 (83%), Positives = 128/143 (89%)
Query: 8 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI 67
+FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE F+ +V+ E +RI
Sbjct: 5 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKRI 64
Query: 68 ISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY 127
I +SEIM+EDD WP PDRVGRQELEIV+G+EHISFTTSK GSLVDV SKDPEGLR FY
Sbjct: 65 IIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCFY 124
Query: 128 YLVQDLKCFVFSLISLHFKIKPI 150
YLVQDLKC VFSLI LHFKIKPI
Sbjct: 125 YLVQDLKCLVFSLIGLHFKIKPI 147
>pdb|1HL6|B Chain B, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1HL6|D Chain D, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
Length = 149
Score = 248 bits (633), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 119/143 (83%), Positives = 128/143 (89%)
Query: 8 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECRRI 67
+FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE F+ +V+ E +RI
Sbjct: 5 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAFVHQSVMEELKRI 64
Query: 68 ISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFY 127
I +SEIM+EDD WP PDRVGRQELEIV+G+EHISFTTSK GSLVDV SKDPEGLR FY
Sbjct: 65 IIDSEIMQEDDLPWPPPDRVGRQELEIVIGDEHISFTTSKTGSLVDVNRSKDPEGLRCFY 124
Query: 128 YLVQDLKCFVFSLISLHFKIKPI 150
YLVQDLKC VFSLI LHFKIKPI
Sbjct: 125 YLVQDLKCLVFSLIGLHFKIKPI 147
>pdb|1P27|A Chain A, Crystal Structure Of The Human Y14MAGOH COMPLEX
pdb|1P27|C Chain C, Crystal Structure Of The Human Y14MAGOH COMPLEX
Length = 144
Score = 248 bits (632), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 116/144 (80%), Positives = 128/144 (88%)
Query: 6 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPAVLRECR 65
+ +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKND MIRKE ++ +V+ E +
Sbjct: 1 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELK 60
Query: 66 RIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRI 125
RII +SEI KEDD WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV SKDPEGLR+
Sbjct: 61 RIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRV 120
Query: 126 FYYLVQDLKCFVFSLISLHFKIKP 149
FYYLVQDLKC VFSLI LHFKIKP
Sbjct: 121 FYYLVQDLKCLVFSLIGLHFKIKP 144
>pdb|2M38|A Chain A, Ptb Domain Of Aida1
Length = 153
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Query: 116 SSKDPEGLRIFYYLVQDLK-----CFVFS 139
+++DPE L F Y+ +DLK C VF+
Sbjct: 95 AAQDPEDLSTFAYITKDLKSNHHYCHVFT 123
>pdb|2D2X|A Chain A, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
pdb|2D2X|B Chain B, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
pdb|2GRU|A Chain A, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
Complexed With Carbaglucose-6-Phosphate, Nad+ And Co2+
pdb|2GRU|B Chain B, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
Complexed With Carbaglucose-6-Phosphate, Nad+ And Co2+
Length = 368
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 106 SKIGSLVDVQSSKDPEGLRIFYYLVQDLK 134
+KIG+L D+ DP+ IF+YL+ D K
Sbjct: 296 NKIGALQDIPLKSDPD--SIFHYLIHDNK 322
>pdb|2G7P|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7P|B Chain B, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7Q|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7Q|B Chain B, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
Length = 425
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 252 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDVASTLNKAKSIIGTTA 307
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 308 SLQYMKNVFKEKYLLSED 325
>pdb|2G7K|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin,
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7K|B Chain B, Structure Of The Light Chain Of Botulinum Neurotoxin,
Serotype A Bound To Small Molecule Inhibitors
pdb|2G7N|A Chain A, Structure Of The Light Chain Of Botulinum Neurotoxin
Serotype A Bound To Small Molecule Inhibitors
Length = 425
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 252 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDVASTLNKAKSIIGTTA 307
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 308 SLQYMKNVFKEKYLLSED 325
>pdb|3V0C|A Chain A, 4.3 Angstrom Crystal Structure Of An Inactive BontA
(E224qR363AY366F)
Length = 1312
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 253 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 308
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 309 SLQYMKNVFKEKYLLSED 326
>pdb|3V0A|A Chain A, 2.7 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
pdb|3V0B|A Chain A, 3.9 Angstrom Crystal Structure Of BontAI IN COMPLEX WITH
NTNHA
Length = 1296
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 253 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 308
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 309 SLQYMKNVFKEKYLLSED 326
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
pdb|2NYY|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Cr1
pdb|2NZ9|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
pdb|2NZ9|B Chain B, Crystal Structure Of Botulinum Neurotoxin Type A Complexed
With Monoclonal Antibody Ar2
Length = 1295
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 252 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 307
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 308 SLQYMKNVFKEKYLLSED 325
>pdb|3NF3|A Chain A, Crystal Structure Of BontA LC WITH JTH-Nb-7239 Peptide
Length = 425
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 253 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 308
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 309 SLQYMKNVFKEKYLLSED 326
>pdb|3DS9|A Chain A, A Potent Peptidomimetic Inhibitor Of Botulinum Neurotoxin
Serotype A Has A Very Different Conformation Than
Snap-25 Substrate
pdb|3DSE|A Chain A, A Potent Peptidomimetic Inhibitor Of Botulinum Neurotoxin
Serotype A Has A Very Different Conformation Than
Snap-25 Substrate
Length = 417
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 253 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 308
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 309 SLQYMKNVFKEKYLLSED 326
>pdb|1XTG|A Chain A, Crystal Structure Of Neurotoxin BontA COMPLEXED WITH
Synaptosomal-Associated Protein 25
Length = 424
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 252 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 307
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 308 SLQYMKNVFKEKYLLSED 325
>pdb|4HEV|A Chain A, Clostridium Botulinum Serotype A Light Chain Inhibited By
Adamantane Hydroxamate
pdb|4HEV|B Chain B, Clostridium Botulinum Serotype A Light Chain Inhibited By
Adamantane Hydroxamate
Length = 441
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 269 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 324
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 325 SLQYMKNVFKEKYLLSED 342
>pdb|3DDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With A Snap-25 Peptide
pdb|3DDB|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With A Substrate Analog Peptide
pdb|3QW5|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rrgf
pdb|3QW6|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rygc
pdb|3QW7|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Rrfc
pdb|3QW8|A Chain A, Crystal Structure Of The Protease Domain Of Botulinum
Neurotoxin Serotype A With A Peptide Inhibitor Crgc
Length = 430
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 253 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 308
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 309 SLQYMKNVFKEKYLLSED 326
>pdb|2ISE|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form A
pdb|2ISE|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form A
pdb|2ISG|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form B
pdb|2ISG|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form B
pdb|2ISH|A Chain A, Botulinum Neurotoxin A Light Chain Wt Crystal Form C
pdb|2ISH|B Chain B, Botulinum Neurotoxin A Light Chain Wt Crystal Form C
Length = 421
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 252 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 307
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 308 SLQYMKNVFKEKYLLSED 325
>pdb|2ILP|A Chain A, Clostridium Botulinum Serotype A Light Chain Inhibited By
4- Chlorocinnamic Hydroxamate
pdb|2ILP|B Chain B, Clostridium Botulinum Serotype A Light Chain Inhibited By
4- Chlorocinnamic Hydroxamate
pdb|2IMA|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By 2,4-Dichlorocinnamic Hydroxamate
pdb|2IMA|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By 2,4-Dichlorocinnamic Hydroxamate
pdb|2IMB|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By L-arginine Hydroxamate
pdb|2IMB|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain
Inhibited By L-arginine Hydroxamate
pdb|2IMC|A Chain A, Clostridium Botulinum Neurotoxin Serotype A Light Chain,
Residues 1-424
pdb|2IMC|B Chain B, Clostridium Botulinum Neurotoxin Serotype A Light Chain,
Residues 1-424
Length = 444
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 273 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 328
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 329 SLQYMKNVFKEKYLLSED 346
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 256 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 311
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 312 SLQYMKNVFKEKYLLSED 329
>pdb|3QIX|A Chain A, Crystal Structure Of BontA LC WITH ZINC BOUND
pdb|3QIX|B Chain B, Crystal Structure Of BontA LC WITH ZINC BOUND
pdb|3QIY|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-1
pdb|3QIZ|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-2
pdb|3QJ0|A Chain A, Crystal Structure Of BontA LC COMPLEXED WITH
HYDROXAMATE-Based Inhibitor Pt-3
Length = 430
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 253 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 308
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 309 SLQYMKNVFKEKYLLSED 326
>pdb|1XTF|A Chain A, Neurotoxin BontA E224Q Y366F MUTANT
pdb|1XTF|B Chain B, Neurotoxin BontA E224Q Y366F MUTANT
Length = 427
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 252 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 307
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 308 SLQYMKNVFKEKYLLSED 325
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 254 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 309
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 310 SLQYMKNVFKEKYLLSED 327
>pdb|3BWI|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With An Acetate Ion Bound At The
Active Site
pdb|3C88|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgc
pdb|3C89|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgm
pdb|3C8A|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgl
pdb|3C8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin Serotype A With Inhibitory Peptide Rrgi
Length = 432
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 253 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 308
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 309 SLQYMKNVFKEKYLLSED 326
>pdb|3BOK|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A Apo-
Enzyme
pdb|3BON|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A With
Zn2+ Cofactor Bound
pdb|3BOO|A Chain A, Structure Of The C. Botulinum Neurotoxin Serotype A With
An Inhibitory Peptide Bound
Length = 425
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 253 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 308
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 309 SLQYMKNVFKEKYLLSED 326
>pdb|4ELC|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA C134 MUTANT WITH MTSEA MODIFIED CYS-165
Length = 445
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 273 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 328
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 329 SLQYMKNVFKEKYLLSED 346
>pdb|4EJ5|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA WILD-Type
Length = 445
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 273 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 328
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 329 SLQYMKNVFKEKYLLSED 346
>pdb|2W2D|A Chain A, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
pdb|2W2D|C Chain C, Crystal Structure Of A Catalytically Active, Non-Toxic
Endopeptidase Derivative Of Clostridium Botulinum Toxin
A
Length = 450
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 257 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 312
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 313 SLQYMKNVFKEKYLLSED 330
>pdb|4EL4|A Chain A, Crystal Structure Of The Catalytic Domain Of Botulinum
Neurotoxin BontA C134SC165S DOUBLE MUTANT
Length = 445
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MAGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIR-KEVFLTPA 59
M+G E LR + GH KF E EFR L Y N T+ + K + T A
Sbjct: 273 MSGLEVSFEELRTFGGHDAKFIDSLQENEFR----LYYYNKFKDIASTLNKAKSIVGTTA 328
Query: 60 VLRECRRIISESEIMKED 77
L+ + + E ++ ED
Sbjct: 329 SLQYMKNVFKEKYLLSED 346
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 119 DPEGLRIFYYLVQDLKCFVFSLI-SLHFKIK 148
DPEG+ I +VQD+ +++S+ +L F IK
Sbjct: 101 DPEGMGIIPRIVQDIFNYIYSMDENLEFHIK 131
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 119 DPEGLRIFYYLVQDLKCFVFSLI-SLHFKIK 148
DPEG+ I +VQD+ +++S+ +L F IK
Sbjct: 101 DPEGMGIIPRIVQDIFNYIYSMDENLEFHIK 131
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 119 DPEGLRIFYYLVQDLKCFVFSLI-SLHFKIK 148
DPEG+ I +VQD+ +++S+ +L F IK
Sbjct: 101 DPEGMGIIPRIVQDIFNYIYSMDENLEFHIK 131
>pdb|3T5X|A Chain A, Pcid2:dss1 Structure
Length = 203
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 12 RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFLTPA 59
+YYVG K F +F + E + + S+ KN MI ++L P
Sbjct: 17 KYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMIL--IYLLPV 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,777,412
Number of Sequences: 62578
Number of extensions: 189987
Number of successful extensions: 475
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 36
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)