Query 031941
Match_columns 150
No_of_seqs 206 out of 1036
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 11:47:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b34_A Protein (small nuclear 100.0 1.7E-33 5.7E-38 210.0 9.0 89 1-90 1-90 (119)
2 2y9a_D Small nuclear ribonucle 100.0 2.3E-29 7.9E-34 189.9 10.5 85 1-86 4-88 (126)
3 4emh_A Probable U6 snRNA-assoc 99.9 2.5E-27 8.6E-32 173.8 8.6 85 1-85 15-99 (105)
4 1d3b_A Protein (small nuclear 99.9 1.9E-26 6.6E-31 159.0 9.7 72 1-73 4-75 (75)
5 1ljo_A Archaeal SM-like protei 99.9 5.1E-24 1.7E-28 146.8 8.6 73 1-74 4-77 (77)
6 1i4k_A Putative snRNP SM-like 99.9 1.6E-23 5.4E-28 144.0 8.6 74 1-75 3-76 (77)
7 1h64_1 SnRNP SM-like protein; 99.9 2.7E-23 9.1E-28 142.4 8.3 73 1-74 3-75 (75)
8 3s6n_F Small nuclear ribonucle 99.9 3.9E-23 1.3E-27 146.0 9.3 74 2-76 6-79 (86)
9 4emk_B U6 snRNA-associated SM- 99.9 9E-23 3.1E-27 140.2 6.9 72 1-73 3-74 (75)
10 1th7_A SnRNP-2, small nuclear 99.9 2.5E-22 8.4E-27 139.7 8.9 72 2-74 9-80 (81)
11 1n9r_A SMF, small nuclear ribo 99.9 1.4E-22 4.6E-27 145.4 7.8 72 1-73 20-92 (93)
12 1i8f_A Putative snRNP SM-like 99.9 2.8E-22 9.4E-27 139.6 8.5 71 1-73 10-80 (81)
13 4emk_A U6 snRNA-associated SM- 99.9 1E-21 3.4E-26 141.5 9.3 72 1-72 19-90 (94)
14 1mgq_A SM-like protein; LSM, R 99.9 1.3E-21 4.6E-26 136.8 8.0 69 1-70 14-82 (83)
15 3s6n_G Small nuclear ribonucle 99.8 2.2E-21 7.4E-26 133.7 7.8 72 3-75 5-76 (76)
16 3bw1_A SMX4 protein, U6 snRNA- 99.8 7.2E-21 2.5E-25 136.7 8.8 77 2-78 10-92 (96)
17 3s6n_E Small nuclear ribonucle 99.8 1.1E-20 3.9E-25 135.3 7.0 72 2-73 16-91 (92)
18 1m5q_A SMAP3, small nuclear ri 99.8 1.9E-20 6.5E-25 141.8 8.3 80 4-88 2-81 (130)
19 2fwk_A U6 snRNA-associated SM- 99.8 1.5E-20 5E-25 140.2 6.7 75 1-75 27-115 (121)
20 1d3b_B Protein (small nuclear 99.8 2.1E-20 7.2E-25 132.1 5.5 74 2-75 4-86 (91)
21 4emg_A Probable U6 snRNA-assoc 99.8 1.1E-19 3.9E-24 129.9 8.9 71 2-72 9-91 (93)
22 1b34_B Protein (small nuclear 99.8 4.9E-19 1.7E-23 131.3 8.1 75 1-75 26-115 (118)
23 4emk_C U6 snRNA-associated SM- 99.8 5.6E-19 1.9E-23 130.7 8.3 73 3-75 24-102 (113)
24 3pgw_B SM B; protein-RNA compl 99.7 5E-18 1.7E-22 139.2 10.6 74 2-75 4-86 (231)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.8 1.3E-08 4.6E-13 72.1 8.1 64 5-75 10-74 (86)
26 1y96_B Gemin7, SIP3, GEM-assoc 96.7 0.0041 1.4E-07 43.8 6.4 64 3-72 20-84 (85)
27 2vxe_A CG10686-PA; EDC3, CAR-1 96.6 0.0089 3E-07 42.3 7.5 65 9-73 10-83 (88)
28 2ylb_A Protein HFQ; RNA-bindin 96.5 0.0034 1.2E-07 43.0 4.6 57 5-75 12-70 (74)
29 3ahu_A Protein HFQ; SM-like mo 96.4 0.006 2E-07 42.3 5.4 58 5-75 14-73 (78)
30 4a53_A EDC3; RNA binding prote 96.3 0.0046 1.6E-07 46.3 4.7 53 7-71 7-61 (125)
31 1kq1_A HFQ, HOST factor for Q 96.3 0.0074 2.5E-07 41.6 5.3 58 5-75 10-69 (77)
32 2fb7_A SM-like protein, LSM-14 96.2 0.0092 3.1E-07 42.8 5.6 70 3-72 10-88 (95)
33 1u1s_A HFQ protein; SM-like ba 96.1 0.01 3.5E-07 41.5 5.4 57 5-75 10-68 (82)
34 3sb2_A Protein HFQ; SM-like, R 96.0 0.0082 2.8E-07 41.7 4.6 57 5-75 11-69 (79)
35 2vc8_A Enhancer of mRNA-decapp 96.0 0.016 5.6E-07 40.6 5.8 60 8-71 5-66 (84)
36 2y90_A Protein HFQ; RNA-bindin 95.8 0.012 4.1E-07 42.8 4.7 57 5-75 12-70 (104)
37 2qtx_A Uncharacterized protein 95.6 0.025 8.6E-07 38.5 5.4 30 11-40 24-53 (71)
38 3hfo_A SSR3341 protein; HFQ, S 94.9 0.044 1.5E-06 37.2 5.0 55 4-70 11-67 (70)
39 3hfn_A ASL2047 protein; HFQ, S 94.0 0.074 2.5E-06 36.2 4.4 55 4-70 13-69 (72)
40 1ycy_A Conserved hypothetical 93.2 0.25 8.6E-06 33.2 5.9 62 5-72 9-70 (71)
41 2rm4_A CG6311-PB, DM EDC3; enh 90.6 1.1 3.6E-05 32.3 7.0 64 8-75 8-73 (103)
42 3rux_A BIRA bifunctional prote 76.6 3.2 0.00011 33.6 4.8 32 11-42 223-254 (270)
43 3by7_A Uncharacterized protein 75.9 12 0.0004 26.7 7.0 56 16-73 7-76 (100)
44 1ib8_A Conserved protein SP14. 73.2 3.1 0.00011 31.5 3.6 31 5-35 97-131 (164)
45 2eay_A Biotin [acetyl-COA-carb 71.2 2.9 9.9E-05 32.9 3.2 47 10-63 186-232 (233)
46 2ej9_A Putative biotin ligase; 69.0 9.1 0.00031 30.1 5.7 30 10-39 190-219 (237)
47 1bia_A BIRA bifunctional prote 66.1 10 0.00035 31.0 5.6 47 10-62 271-317 (321)
48 1sg5_A ORF, hypothetical prote 56.4 4.6 0.00016 27.9 1.5 25 6-30 19-43 (86)
49 2dxu_A Biotin--[acetyl-COA-car 56.4 7.7 0.00026 30.6 3.1 30 11-42 188-217 (235)
50 2xk0_A Polycomb protein PCL; t 55.9 34 0.0011 22.9 5.7 23 11-33 18-40 (69)
51 2e12_A SM-like motif, hypothet 54.1 20 0.00068 25.4 4.5 19 12-30 28-46 (101)
52 4hcz_A PHD finger protein 1; p 51.7 20 0.0007 23.2 3.9 25 11-35 6-30 (58)
53 3v4h_A Hypothetical protein; s 50.3 23 0.00079 27.2 4.8 68 3-74 91-164 (185)
54 3rkx_A Biotin-[acetyl-COA-carb 46.7 32 0.0011 28.2 5.5 32 10-42 277-308 (323)
55 1zq1_A Glutamyl-tRNA(Gln) amid 45.8 16 0.00056 31.8 3.7 31 1-31 1-37 (438)
56 3uby_A DNA-3-methyladenine gly 45.0 26 0.0009 27.9 4.5 33 4-36 17-49 (219)
57 2m0o_A PHD finger protein 1; t 44.5 19 0.00066 24.6 3.1 25 11-35 29-53 (79)
58 2qqr_A JMJC domain-containing 41.0 37 0.0013 24.7 4.4 36 10-45 7-44 (118)
59 2e5q_A PHD finger protein 19; 40.7 50 0.0017 21.7 4.5 25 11-35 10-34 (63)
60 2qs8_A XAA-Pro dipeptidase; am 37.8 28 0.00096 28.0 3.7 40 31-70 2-41 (418)
61 2eqj_A Metal-response element- 36.9 46 0.0016 22.0 3.9 25 11-35 16-40 (66)
62 2e5p_A Protein PHF1, PHD finge 35.4 51 0.0017 21.9 4.0 25 11-35 12-36 (68)
63 1nh2_D Transcription initiatio 32.9 62 0.0021 23.6 4.5 30 19-48 55-87 (121)
64 3he1_A Major exported HCP3 pro 31.5 38 0.0013 26.2 3.4 70 3-75 101-182 (195)
65 2d6f_A Glutamyl-tRNA(Gln) amid 30.8 47 0.0016 28.9 4.1 27 4-31 8-37 (435)
66 1nvp_D Transcription initiatio 29.4 78 0.0027 22.5 4.5 29 19-47 51-82 (108)
67 3bfm_A Biotin protein ligase-l 26.3 76 0.0026 24.5 4.3 28 10-42 192-219 (235)
68 3eaa_A EVPC; T6SS, unknown fun 25.4 25 0.00084 26.2 1.2 61 9-73 74-140 (163)
69 4a8c_A Periplasmic PH-dependen 24.3 90 0.0031 26.3 4.7 31 13-43 88-118 (436)
70 1ky9_A Protease DO, DEGP, HTRA 24.1 89 0.003 26.6 4.7 31 13-43 111-141 (448)
71 3mkv_A Putative amidohydrolase 24.0 71 0.0024 23.5 3.6 34 37-70 5-38 (426)
72 3sti_A Protease DEGQ; serine p 20.9 1.1E+02 0.0037 23.9 4.2 31 13-43 88-118 (245)
73 3feq_A Putative amidohydrolase 20.6 1.1E+02 0.0038 24.1 4.4 33 37-69 5-37 (423)
74 3q2s_C Cleavage and polyadenyl 20.2 23 0.00079 27.3 0.1 9 59-67 135-143 (229)
75 3stj_A Protease DEGQ; serine p 20.1 1.1E+02 0.0038 25.0 4.3 31 13-43 88-118 (345)
No 1
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=100.00 E-value=1.7e-33 Score=209.95 Aligned_cols=89 Identities=29% Similarity=0.487 Sum_probs=74.7
Q ss_pred CChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc-cchH
Q 031941 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV-IDKV 79 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~l-ld~~ 79 (150)
|+|++||+++++++|+|+|+|+++|+|+|.+||+||||+|+||+|+..+++. .+++++||||+||+||++||++ +|++
T Consensus 1 M~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~-~~lg~v~IRG~nI~~I~~pd~l~~d~~ 79 (119)
T 1b34_A 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREP-VQLETLSIRGNNIRYFILPDSLPLDTL 79 (119)
T ss_dssp -CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCC-EEEEEEEECGGGEEEEECCTTCCHHHH
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCce-eEcceEEEcCCeEEEEEeccccccchh
Confidence 9999999999999999999999999999999999999999999999766554 7899999999999999999998 8888
Q ss_pred HHHhhhhcCCC
Q 031941 80 QEETKSRSDRK 90 (150)
Q Consensus 80 ~~~~~~~~~~~ 90 (150)
+.+++++.+++
T Consensus 80 l~~~~pK~k~~ 90 (119)
T 1b34_A 80 LVDVEPKVKSK 90 (119)
T ss_dssp TC---------
T ss_pred Hhhhccccccc
Confidence 87777665443
No 2
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.96 E-value=2.3e-29 Score=189.89 Aligned_cols=85 Identities=28% Similarity=0.565 Sum_probs=75.9
Q ss_pred CChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccccchHH
Q 031941 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQ 80 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~lld~~~ 80 (150)
|+|++||+++++++|+|||||+++|+|+|.+||.||||+|+||+++.++++ +.++++|||||++|+||++||++.+...
T Consensus 4 ~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~-~~~l~~v~IRGnnI~~I~lpd~l~~~~~ 82 (126)
T 2y9a_D 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR-VAQLEQVYIRGSKIRFLILPDMLKNAPM 82 (126)
T ss_dssp CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSC-CEEEEEEEECGGGEEEEECCSSCSSSSH
T ss_pred ccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCc-EeecccEEEeCCEEEEEEccccccchHH
Confidence 589999999999999999999999999999999999999999999987776 4799999999999999999999955444
Q ss_pred HHhhhh
Q 031941 81 EETKSR 86 (150)
Q Consensus 81 ~~~~~~ 86 (150)
.++.++
T Consensus 83 l~~~~~ 88 (126)
T 2y9a_D 83 LKSMKN 88 (126)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 444433
No 3
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.94 E-value=2.5e-27 Score=173.78 Aligned_cols=85 Identities=65% Similarity=1.170 Sum_probs=58.2
Q ss_pred CChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccccchHH
Q 031941 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQ 80 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~lld~~~ 80 (150)
+.|++||+++++++|+|+||||++|+|+|.+||.||||+|+||+++..+++++.+++.+||||++|+||++||+++|+++
T Consensus 15 ~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l~d~p~ 94 (105)
T 4emh_A 15 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQVA 94 (105)
T ss_dssp -----------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC---------
T ss_pred CcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHHhhhhh
Confidence 46999999999999999999999999999999999999999999998888767899999999999999999999999998
Q ss_pred HHhhh
Q 031941 81 EETKS 85 (150)
Q Consensus 81 ~~~~~ 85 (150)
++++.
T Consensus 95 ~~~~~ 99 (105)
T 4emh_A 95 KQQAQ 99 (105)
T ss_dssp -----
T ss_pred hhhhc
Confidence 88764
No 4
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.94 E-value=1.9e-26 Score=159.04 Aligned_cols=72 Identities=33% Similarity=0.674 Sum_probs=68.7
Q ss_pred CChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCc
Q 031941 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd 73 (150)
|.|++||+++++|+|+||||||++|+|+|.+||.|||++|+||+++.++++ ..+++++||||++|+||++||
T Consensus 4 ~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~-~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR-VAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSC-EEEEEEEEECGGGEEEEEECC
T ss_pred cCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCc-EEEcCeEEEeCCEEEEEEcCC
Confidence 589999999999999999999999999999999999999999999987776 489999999999999999997
No 5
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.90 E-value=5.1e-24 Score=146.79 Aligned_cols=73 Identities=25% Similarity=0.463 Sum_probs=66.8
Q ss_pred CChHHHHhhcCCCeEEEEEcCC-CEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCcc
Q 031941 1 MLPLSLLKTAQGHPMLVELKNG-ETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG-~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~ 74 (150)
|.|+++|+++++++|+|+|+|| ++|+|+|.+||+|||++|+||+|+..+ +...+++.+||||++|+||++||+
T Consensus 4 ~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~-~~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 4 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE-EKVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETT-EEEEEEEEEEECGGGEEEEEEC--
T ss_pred cchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecC-CcEeECCeEEEeCCeEEEEEeCCC
Confidence 6899999999999999999999 999999999999999999999999743 445789999999999999999985
No 6
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.89 E-value=1.6e-23 Score=143.96 Aligned_cols=74 Identities=24% Similarity=0.389 Sum_probs=67.3
Q ss_pred CChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031941 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~l 75 (150)
+.|+++|+++++++|+|+|+||++|.|+|.+||.|||++|+||+++..+. ...+++.+||||++|+||++||..
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~-~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE-VVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTE-EEEEEEEEEECGGGEEEEEECC--
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCC-cEeECCEEEECCCEEEEEEeCCCC
Confidence 46999999999999999999999999999999999999999999997554 457899999999999999999863
No 7
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.89 E-value=2.7e-23 Score=142.38 Aligned_cols=73 Identities=23% Similarity=0.393 Sum_probs=66.1
Q ss_pred CChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCcc
Q 031941 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~ 74 (150)
+.|+++|+++++++|+|+|+||++|+|+|.+||+|||++|+||+++..+ ....+++.+||||++|.||+.||+
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG-EVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT-EEEEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC-CceeECCEEEECCCEEEEEEeCCC
Confidence 3699999999999999999999999999999999999999999999754 345789999999999999999875
No 8
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.89 E-value=3.9e-23 Score=146.03 Aligned_cols=74 Identities=34% Similarity=0.480 Sum_probs=67.0
Q ss_pred ChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCcccc
Q 031941 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVI 76 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~ll 76 (150)
.|++||+++++|+|+|+|+||++|+|+|.+||+||||+|+||+++. +++.+.+++.+||||++|+||++||+..
T Consensus 6 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~g~~~~~lg~v~IRG~nI~~i~~~d~~~ 79 (86)
T 3s6n_F 6 NPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI-DGALSGHLGEVLIRCNNVLYIRGVEEEE 79 (86)
T ss_dssp CHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEESSEEECGGGEEEEEECC---
T ss_pred CcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEc-CCceeeEccEEEEeCCeEEEEEeCCccc
Confidence 6999999999999999999999999999999999999999999874 5655688999999999999999998763
No 9
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.87 E-value=9e-23 Score=140.21 Aligned_cols=72 Identities=28% Similarity=0.472 Sum_probs=65.7
Q ss_pred CChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCc
Q 031941 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd 73 (150)
+.|+++|+++++|+|+|+|+||++|+|+|.+||+||||+|+||+++. ++++..+++.+||||++|.||+..|
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYV-NGKKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEE-TTEEEEEEEEEEEEGGGSSEEEEC-
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEe-cCCcccEecEEEEcCCeEEEEEecC
Confidence 36999999999999999999999999999999999999999999985 4555688999999999999998765
No 10
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.87 E-value=2.5e-22 Score=139.68 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=65.9
Q ss_pred ChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCcc
Q 031941 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDE 74 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~ 74 (150)
.|+.+|+++++++|+|+|+||++|+|+|.+||.||||+|+||+++..+.+ ..+++.+||||++|.||++||+
T Consensus 9 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~-~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 9 TAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGS-GKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp HHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSC-EEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCc-eeECCEEEECCCEEEEEEecCC
Confidence 59999999999999999999999999999999999999999999976544 4789999999999999999875
No 11
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.87 E-value=1.4e-22 Score=145.40 Aligned_cols=72 Identities=31% Similarity=0.425 Sum_probs=62.0
Q ss_pred CChHHHHhhcCCCeEEEEEcCC-CEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCc
Q 031941 1 MLPLSLLKTAQGHPMLVELKNG-ETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG-~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd 73 (150)
|.|+++|+++++++|+|+|+|| ++|+|+|.+||+||||+|+||+++. +++++.+++.+||||++|+||++|+
T Consensus 20 ~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~-~~~~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 20 VNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV-AGVSHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp ------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEE-TTEEEEECCSEEECGGGEEEEEECC
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEc-CCCeEeEcCEEEEcCCeEEEEEeCC
Confidence 5799999999999999999999 9999999999999999999999986 4555689999999999999999886
No 12
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.87 E-value=2.8e-22 Score=139.57 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=66.2
Q ss_pred CChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCc
Q 031941 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd 73 (150)
+.|+.+|+++++++|+|+|+||++|.|+|.+||.||||+|+||+|+ ++....+++.+||||++|.||++||
T Consensus 10 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~--~~~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 10 ATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI--IDGNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEECGGGEEEEEECC
T ss_pred cchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE--cCCcccCCCEEEECCCEEEEEEeCC
Confidence 3699999999999999999999999999999999999999999999 3445588999999999999999986
No 13
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.86 E-value=1e-21 Score=141.46 Aligned_cols=72 Identities=26% Similarity=0.387 Sum_probs=65.7
Q ss_pred CChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecC
Q 031941 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVP 72 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lP 72 (150)
+.|+.||+++++++|+|+|+||++|.|+|.+||+||||+|+||+|+..++++...++.+||||+||.||+..
T Consensus 19 ~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~ 90 (94)
T 4emk_A 19 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPG 90 (94)
T ss_dssp -CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEEC
T ss_pred ccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeC
Confidence 479999999999999999999999999999999999999999999974444558899999999999999854
No 14
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.85 E-value=1.3e-21 Score=136.79 Aligned_cols=69 Identities=26% Similarity=0.435 Sum_probs=64.3
Q ss_pred CChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEe
Q 031941 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLR 70 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~ 70 (150)
+.|+.+|+++++++|+|+|+||++|.|+|.+||.|||++|+||+|+..+. ...+++.+||||++|+||+
T Consensus 14 ~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~-~~~~lg~v~IRG~~I~~i~ 82 (83)
T 1mgq_A 14 QRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGE-VTRRLGTVLIRGDNIVYIS 82 (83)
T ss_dssp TCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTE-EEEEEEEEEECGGGEEEEE
T ss_pred cChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCC-cccCCCEEEECCCEEEEEE
Confidence 47999999999999999999999999999999999999999999997543 4578999999999999997
No 15
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.85 E-value=2.2e-21 Score=133.73 Aligned_cols=72 Identities=25% Similarity=0.365 Sum_probs=53.4
Q ss_pred hHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031941 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 3 Pl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~l 75 (150)
|.++|+++++++|+|+|+||++|+|+|.+||+||||+|+||+|+..+++. .+++.++|||++|.||+..|.+
T Consensus 5 ~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~-~~lg~v~iRG~~I~~i~~~d~~ 76 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ-NNIGMVVIRGNSIIMLEALERV 76 (76)
T ss_dssp ---------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC-----CBSSEEECSSSEEEEEC----
T ss_pred chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcE-eEcCEEEECCCeEEEEEeccCC
Confidence 67899999999999999999999999999999999999999998766544 7899999999999999987753
No 16
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.2e-21 Score=136.68 Aligned_cols=77 Identities=29% Similarity=0.412 Sum_probs=65.8
Q ss_pred ChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccC------CCeeeecCeEEEecCeEEEEecCccc
Q 031941 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD------GDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~------g~~~~~l~~v~IRGnnIryI~lPd~l 75 (150)
-|+.+|+++++|+|+|+|++|++|.|+|.+||+||||+|+||+|+..+ .+....++.+||||++|.||..+++.
T Consensus 10 ~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~ 89 (96)
T 3bw1_A 10 TPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSED 89 (96)
T ss_dssp CHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC--
T ss_pred hHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCcc
Confidence 499999999999999999999999999999999999999999998643 23346799999999999999999887
Q ss_pred cch
Q 031941 76 IDK 78 (150)
Q Consensus 76 ld~ 78 (150)
.|.
T Consensus 90 ~d~ 92 (96)
T 3bw1_A 90 DDG 92 (96)
T ss_dssp ---
T ss_pred ccc
Confidence 654
No 17
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.82 E-value=1.1e-20 Score=135.29 Aligned_cols=72 Identities=14% Similarity=0.254 Sum_probs=66.5
Q ss_pred ChHHHHhhcCCCeEEEEE----cCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCc
Q 031941 2 LPLSLLKTAQGHPMLVEL----KNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeL----KnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd 73 (150)
.|++||.++++++|+|+| +++++|+|+|.+||+||||+|+||+|+..++++..+++.+||||+||.||+.+|
T Consensus 16 ~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 16 QPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC-
T ss_pred CCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeCC
Confidence 699999999999999999 999999999999999999999999999755555678999999999999999765
No 18
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.82 E-value=1.9e-20 Score=141.78 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=72.7
Q ss_pred HHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccccchHHHHh
Q 031941 4 LSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEET 83 (150)
Q Consensus 4 l~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~lld~~~~~~ 83 (150)
+++|+++++|+|+|+|+||++|+|+|.+||+||||+|+||+++. + .+++.+||||+||+||++||+.+|+...++
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~--~---~~lg~v~IRG~nI~~I~~~d~~~d~~~f~~ 76 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA--G---EKFNRVFIMYRYIVHIDSTERRIDMREFAK 76 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT--C---CEEEEEEECGGGEEEEEECCCCCCHHHHHH
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc--C---CEeceEEEeCCeEEEEEcCCcccCHHHHHH
Confidence 68999999999999999999999999999999999999999973 3 468999999999999999999999877777
Q ss_pred hhhcC
Q 031941 84 KSRSD 88 (150)
Q Consensus 84 ~~~~~ 88 (150)
+.++.
T Consensus 77 ~~~r~ 81 (130)
T 1m5q_A 77 QAEKI 81 (130)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 66554
No 19
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.82 E-value=1.5e-20 Score=140.19 Aligned_cols=75 Identities=23% Similarity=0.413 Sum_probs=65.7
Q ss_pred CChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccC---------CCe-----eeecCeEEEecCeE
Q 031941 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD---------GDR-----FWRMPECYIRGNTI 66 (150)
Q Consensus 1 MlPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~---------g~~-----~~~l~~v~IRGnnI 66 (150)
++|+.||+++++++|+|+|+||++|.|+|.+||.||||+|+||+|+..+ ++. ...++.+||||++|
T Consensus 27 ~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nV 106 (121)
T 2fwk_A 27 ILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNV 106 (121)
T ss_dssp CCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGE
T ss_pred cCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEE
Confidence 4799999999999999999999999999999999999999999998742 332 47899999999999
Q ss_pred EEEecCccc
Q 031941 67 KYLRVPDEV 75 (150)
Q Consensus 67 ryI~lPd~l 75 (150)
.||...++-
T Consensus 107 v~I~~~~~~ 115 (121)
T 2fwk_A 107 AMLVPGGDP 115 (121)
T ss_dssp EEEESSSCC
T ss_pred EEEEecCCC
Confidence 999976543
No 20
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.81 E-value=2.1e-20 Score=132.12 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=63.2
Q ss_pred ChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEcc---------CCCeeeecCeEEEecCeEEEEecC
Q 031941 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK---------DGDRFWRMPECYIRGNTIKYLRVP 72 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~---------~g~~~~~l~~v~IRGnnIryI~lP 72 (150)
-|.++|+++++++|+|+|+||++|.|+|.+||.||||+|+||+|+.. +......++.+||||++|.||+++
T Consensus 4 ~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~ 83 (91)
T 1d3b_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (91)
T ss_dssp ---CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEE
T ss_pred ChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcC
Confidence 47889999999999999999999999999999999999999999631 223346899999999999999988
Q ss_pred ccc
Q 031941 73 DEV 75 (150)
Q Consensus 73 d~l 75 (150)
+.-
T Consensus 84 ~~~ 86 (91)
T 1d3b_B 84 GPP 86 (91)
T ss_dssp ECC
T ss_pred CCC
Confidence 754
No 21
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.80 E-value=1.1e-19 Score=129.94 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=64.0
Q ss_pred ChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccC----C--------CeeeecCeEEEecCeEEEE
Q 031941 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD----G--------DRFWRMPECYIRGNTIKYL 69 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~----g--------~~~~~l~~v~IRGnnIryI 69 (150)
.|+.||+.+++++|+|+|++|++|.|+|.+||.||||+|+||+|+..+ + +....++.+||||+||.+|
T Consensus 9 ~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I 88 (93)
T 4emg_A 9 EPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILI 88 (93)
T ss_dssp CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEE
T ss_pred CCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEE
Confidence 699999999999999999999999999999999999999999998642 2 2347899999999999999
Q ss_pred ecC
Q 031941 70 RVP 72 (150)
Q Consensus 70 ~lP 72 (150)
+.|
T Consensus 89 ~p~ 91 (93)
T 4emg_A 89 APP 91 (93)
T ss_dssp ECC
T ss_pred Eec
Confidence 876
No 22
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.78 E-value=4.9e-19 Score=131.29 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=63.6
Q ss_pred CChHHHHhhcC--CCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccC------CCe-------eeecCeEEEecCe
Q 031941 1 MLPLSLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD------GDR-------FWRMPECYIRGNT 65 (150)
Q Consensus 1 MlPl~lL~~l~--gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~------g~~-------~~~l~~v~IRGnn 65 (150)
+.|++||+.++ +++|+|+|+||++|.|+|.+||.||||+|+||+++... +++ ...++.+||||++
T Consensus 26 ~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~n 105 (118)
T 1b34_B 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDS 105 (118)
T ss_dssp CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGG
T ss_pred cChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCE
Confidence 36999999999 69999999999999999999999999999999997522 110 1358999999999
Q ss_pred EEEEecCccc
Q 031941 66 IKYLRVPDEV 75 (150)
Q Consensus 66 IryI~lPd~l 75 (150)
|.||..++..
T Consensus 106 Vv~I~~~~~~ 115 (118)
T 1b34_B 106 VIVVLRNPLI 115 (118)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEeCchh
Confidence 9999988764
No 23
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.77 E-value=5.6e-19 Score=130.68 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=56.6
Q ss_pred hHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCC------CeeeecCeEEEecCeEEEEecCccc
Q 031941 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG------DRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 3 Pl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g------~~~~~l~~v~IRGnnIryI~lPd~l 75 (150)
|+..|.++++++|+|+|++|++|.|+|.+||.||||+|+||+|+..+. .....++.+||||+||.||..+|..
T Consensus 24 ~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ 102 (113)
T 4emk_C 24 SILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGS 102 (113)
T ss_dssp --------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC--
T ss_pred hHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCcc
Confidence 678899999999999999999999999999999999999999986542 2357899999999999999988755
No 24
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.75 E-value=5e-18 Score=139.21 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=65.1
Q ss_pred ChHHHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEcc---------CCCeeeecCeEEEecCeEEEEecC
Q 031941 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK---------DGDRFWRMPECYIRGNTIKYLRVP 72 (150)
Q Consensus 2 lPl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~---------~g~~~~~l~~v~IRGnnIryI~lP 72 (150)
.+-.+|+++++|+|+|+|+|+++|+|+|.+||.||||+|+||+|+.. +.++..+++++||||+||.||++.
T Consensus 4 ~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve 83 (231)
T 3pgw_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (231)
T ss_pred CchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEec
Confidence 36789999999999999999999999999999999999999999752 233457899999999999999987
Q ss_pred ccc
Q 031941 73 DEV 75 (150)
Q Consensus 73 d~l 75 (150)
+.-
T Consensus 84 ~pP 86 (231)
T 3pgw_B 84 GPP 86 (231)
T ss_pred CCC
Confidence 544
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.83 E-value=1.3e-08 Score=72.09 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=55.4
Q ss_pred HHHhhcCCCeEEEEEcCCCEEEEEEEEec-CccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031941 5 SLLKTAQGHPMLVELKNGETYNGHLVNCD-TWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 5 ~lL~~l~gk~V~VeLKnG~~~~G~L~~~D-~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~l 75 (150)
..|+++++|+|.|.|.|+++|+|+|.+|| ...||+|.|+ . +++ ++..++|.|..|..|.+-++-
T Consensus 10 ~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~---~-~~~---~~~~~iI~G~aI~eI~v~~~~ 74 (86)
T 1y96_A 10 LEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF---L-EDG---SMSVTGIMGHAVQTVETMNEG 74 (86)
T ss_dssp HHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE---C-TTS---CEEEEEECGGGEEEEEEEECC
T ss_pred HHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec---c-cCC---eEEEEEEecceEEEEEEecch
Confidence 47899999999999999999999999999 7899999999 2 332 357899999999999876555
No 26
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.74 E-value=0.0041 Score=43.79 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=53.5
Q ss_pred hHHHHhhcCCCeEEEEEcCCCEEEEEEEEecC-ccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecC
Q 031941 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDT-WMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVP 72 (150)
Q Consensus 3 Pl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~-~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lP 72 (150)
.|.+|.++.+++|.+.|+..+++.++..++|. ..|+..++-.- +=| .+++..||.+-|.++++.
T Consensus 20 fLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~T--PiG----v~~eAlLR~~Dii~~sF~ 84 (85)
T 1y96_B 20 YLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQT--PIG----VQAEALLRCSDIISYTFK 84 (85)
T ss_dssp HHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEECC--TTC----CEEEEEEEGGGEEEEEEC
T ss_pred HHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcCC--Ccc----cchhhhhhcCCEEEEEec
Confidence 36788999999999999999999999999995 56888877543 333 468899999999998863
No 27
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=96.61 E-value=0.0089 Score=42.31 Aligned_cols=65 Identities=23% Similarity=0.242 Sum_probs=53.5
Q ss_pred hcCCCeEEEEEcCCCEEEEEEEEecC-ccceEEccEEEEccCCCee--------eecCeEEEecCeEEEEecCc
Q 031941 9 TAQGHPMLVELKNGETYNGHLVNCDT-WMNIHLREVICTSKDGDRF--------WRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 9 ~l~gk~V~VeLKnG~~~~G~L~~~D~-~MNI~L~dv~~t~~~g~~~--------~~l~~v~IRGnnIryI~lPd 73 (150)
.++|++|.+-.|.+..|+|+|..+|. ..-|.|+||..+-.++.+. ..++.+..||+.|+.|++-+
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~ 83 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVN 83 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEec
Confidence 46899999999999999999999995 4689999999976554311 24678899999999988754
No 28
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.49 E-value=0.0034 Score=42.96 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=42.8
Q ss_pred HHHhhcC--CCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031941 5 SLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 5 ~lL~~l~--gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~l 75 (150)
.||+.+. ..+|+|.|.||..++|++.++|.|+=+.-.+ ...+|-=..|.+|.....+
T Consensus 12 ~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~~~--------------~~~LIYKhAIsTI~p~~~v 70 (74)
T 2ylb_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT--------------VSQMVYKHAISTVVPSRPV 70 (74)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESS--------------SEEEEEGGGEEEEEESSCC
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC--------------ceEEEEeeeEEEEeEcccc
Confidence 4677776 8999999999999999999999998544311 1356666778887755443
No 29
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.40 E-value=0.006 Score=42.26 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=42.0
Q ss_pred HHHhhcC--CCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031941 5 SLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 5 ~lL~~l~--gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~l 75 (150)
.||+.+. ..+|+|-|.||..++|++.+||.|+=+.-. ++.. .+|-=..|.+|.....+
T Consensus 14 ~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~-------~g~q------qlIYKhAISTI~p~~~v 73 (78)
T 3ahu_A 14 QFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLES-------EGKQ------QLIYKHAISTFAPQKNV 73 (78)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEES-------SSCE------EEEEGGGEEEEEESSCC
T ss_pred HHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEE-------CCee------EEEEcceEEEEeecccc
Confidence 4666665 899999999999999999999999855532 3322 34555667777654443
No 30
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.32 E-value=0.0046 Score=46.31 Aligned_cols=53 Identities=28% Similarity=0.226 Sum_probs=41.0
Q ss_pred HhhcCCCeEEEEEcCCCEEEEEEEEecCccceEE--ccEEEEccCCCeeeecCeEEEecCeEEEEec
Q 031941 7 LKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHL--REVICTSKDGDRFWRMPECYIRGNTIKYLRV 71 (150)
Q Consensus 7 L~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L--~dv~~t~~~g~~~~~l~~v~IRGnnIryI~l 71 (150)
+..++|.+|.|+|+++.+|+|+|..+|. -+|+| ++|.+. + ..|+.+.|.-+.+
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a~~s-------~----~~I~asdI~DLkV 61 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDS-SNSILQLRLANDS-------T----KSIVTKDIKDLRI 61 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEET-TTTEEEEEETTTE-------E----EEEEGGGEEEEEE
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecC-CeeEEeccccccc-------c----ceeecccccceee
Confidence 4578999999999999999999999984 35666 988432 1 1778887776654
No 31
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.29 E-value=0.0074 Score=41.60 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=41.4
Q ss_pred HHHhhcC--CCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031941 5 SLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 5 ~lL~~l~--gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~l 75 (150)
.||+.+. ..+|+|.|.||..++|++.+||.|+=+.-. +++ ..+|-=..|.+|.....+
T Consensus 10 ~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~-------~g~------~qLIYKhAISTI~p~~~v 69 (77)
T 1kq1_A 10 KALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNS-------QGK------QHLIYKHAISTYTVETEG 69 (77)
T ss_dssp HHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEE-------TTE------EEEEEGGGEEEEEC----
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEE-------CCe------eEEEEeeeEEEEeECccc
Confidence 4677776 899999999999999999999999855432 232 245666678888755544
No 32
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.21 E-value=0.0092 Score=42.78 Aligned_cols=70 Identities=23% Similarity=0.117 Sum_probs=53.4
Q ss_pred hHHHHhhcCCCeEEEEEcCCCEEEEEEEEecC-ccceEEccEEEEccCCCe--------eeecCeEEEecCeEEEEecC
Q 031941 3 PLSLLKTAQGHPMLVELKNGETYNGHLVNCDT-WMNIHLREVICTSKDGDR--------FWRMPECYIRGNTIKYLRVP 72 (150)
Q Consensus 3 Pl~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~-~MNI~L~dv~~t~~~g~~--------~~~l~~v~IRGnnIryI~lP 72 (150)
|...-..++|++|.+-.|.+..|+|+|..+|. ..-|.|+||..+-.++.+ ...++.+..||+-|+.|.+-
T Consensus 10 ~~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~ 88 (95)
T 2fb7_A 10 DPSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVC 88 (95)
T ss_dssp ------CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEES
T ss_pred CCCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEe
Confidence 34455678999999999999999999999995 568999999987654421 13478899999999998864
No 33
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.11 E-value=0.01 Score=41.45 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=42.0
Q ss_pred HHHhhcC--CCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031941 5 SLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 5 ~lL~~l~--gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~l 75 (150)
.||+.+. ..+|+|-|.||..++|++.+||.|+=+.-. +. ..+|-=..|..|.....+
T Consensus 10 ~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~~--------~~------qqLVYKHAISTI~p~~~v 68 (82)
T 1u1s_A 10 PYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKN--------TV------SQMVYKHAISTVVPSRPV 68 (82)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEES--------SS------CEEEEGGGEEEEEESSCC
T ss_pred HHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEec--------Cc------eEEEEeeeeEEEeecccc
Confidence 4666665 889999999999999999999999855431 11 245555677777765544
No 34
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.04 E-value=0.0082 Score=41.65 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=42.8
Q ss_pred HHHhhcC--CCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031941 5 SLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 5 ~lL~~l~--gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~l 75 (150)
.||+.+. ..+|+|.|.||..++|.+.+||.|+=+. + +++ ..+|-=..|.+|.....+
T Consensus 11 ~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL-~-------~g~------~qLIYKhAISTI~P~~~v 69 (79)
T 3sb2_A 11 PFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL-R-------NTV------TQMVYKHAISTVVPARAV 69 (79)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE-E-------SSS------EEEEEGGGEEEEEESSCC
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE-E-------CCc------eEEEEeeeEEEEeecCce
Confidence 4666664 6789999999999999999999998554 2 232 246666788888766555
No 35
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=95.96 E-value=0.016 Score=40.62 Aligned_cols=60 Identities=20% Similarity=0.330 Sum_probs=50.0
Q ss_pred hhcCCCeEEEEEcCCC-EEEEEEEEecCc-cceEEccEEEEccCCCeeeecCeEEEecCeEEEEec
Q 031941 8 KTAQGHPMLVELKNGE-TYNGHLVNCDTW-MNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRV 71 (150)
Q Consensus 8 ~~l~gk~V~VeLKnG~-~~~G~L~~~D~~-MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~l 71 (150)
.+++|+.|.|+.++.. .|+|.|..+|.. -||+|.+|. .+|-+ ....+|.+++.-|.-+.+
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~~-~~s~eVtls~~DI~~L~i 66 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGVK-CLVPEVTFRAGDITELKI 66 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTEE-CSSSEEEEEGGGCSEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCCC-CCCcEEEEEecChhheEE
Confidence 4689999999999999 999999999976 589999995 46753 456789999997776654
No 36
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=95.77 E-value=0.012 Score=42.77 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=42.9
Q ss_pred HHHhhcC--CCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecCccc
Q 031941 5 SLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 5 ~lL~~l~--gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lPd~l 75 (150)
.||+.+. ..+|+|.|.||..++|+|.+||.|+=+.-.+ ...+|-=..|.+|.....+
T Consensus 12 ~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~~~--------------kqqLIYKHAISTI~p~~~v 70 (104)
T 2y90_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT--------------VSQMVYKHAISTVVPSRPV 70 (104)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEESS--------------SEEEEEGGGEEEEEESSCC
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC--------------ceEEEEeeeeEEEeecccc
Confidence 4677776 5699999999999999999999998554321 1356666788888766554
No 37
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.59 E-value=0.025 Score=38.47 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCEEEEEEEEecCccceEE
Q 031941 11 QGHPMLVELKNGETYNGHLVNCDTWMNIHL 40 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L 40 (150)
...+|+|-|.||..++|.+.+||.|+=+.-
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~ 53 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMVK 53 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEEE
Confidence 478999999999999999999999986554
No 38
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=94.92 E-value=0.044 Score=37.15 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=40.8
Q ss_pred HHHHhhcC--CCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEe
Q 031941 4 LSLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLR 70 (150)
Q Consensus 4 l~lL~~l~--gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~ 70 (150)
+..|++++ ..+|.|+|.||..++|.|.-.|.++=....+ ++. .++|.=..|.||.
T Consensus 11 vR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~~~------~~~------~~LI~r~AI~~I~ 67 (70)
T 3hfo_A 11 VRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLVDD------SER------STIVRLAAIAYIT 67 (70)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEECT------TCC------EEEEEGGGEEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEEcC------CCC------eEEEEeeeeEEEe
Confidence 67888887 7899999999999999999999987443222 222 3556666677764
No 39
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=93.97 E-value=0.074 Score=36.21 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=40.1
Q ss_pred HHHHhhcC--CCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEe
Q 031941 4 LSLLKTAQ--GHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLR 70 (150)
Q Consensus 4 l~lL~~l~--gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~ 70 (150)
+..|++++ .++|.|+|.+|..++|.|.-.|.++=....+ ++. .++|.=..|.||.
T Consensus 13 vR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~~------~~~------~~LI~R~AI~~Ik 69 (72)
T 3hfn_A 13 IRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIADE------NSR------QTTIWKQAIAYLQ 69 (72)
T ss_dssp HHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC---------C------EEEEEGGGEEEEE
T ss_pred HHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEcC------CCC------eEEEEeeeeEEEE
Confidence 67888887 6899999999999999999999986333322 111 3566666777764
No 40
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=93.22 E-value=0.25 Score=33.18 Aligned_cols=62 Identities=24% Similarity=0.387 Sum_probs=46.2
Q ss_pred HHHhhcCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEecC
Q 031941 5 SLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVP 72 (150)
Q Consensus 5 ~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~lP 72 (150)
..|++-.+++|-|-.-....++|+|..||.- -|.|+||+.+. |+ +-..++|+=+.|.+|.|-
T Consensus 9 ktL~~WKg~rvAv~vg~ehSFtGiledFDeE-viLL~dV~D~~--GN---k~k~liv~idDinWimL~ 70 (71)
T 1ycy_A 9 KVLKEWKGHKVAVSVGGDHSFTGTLEDFDEE-VILLKDVVDVI--GN---RGKQMLIGLEDINWIMLL 70 (71)
T ss_dssp HHHHHHTTSEEEEEEC----CEEEEEEECSS-EEEEEEEEETT--EE---EEEEEEEEGGGEEEEEEC
T ss_pred HHHHHhCCcEEEEEecCcceeeeehhhcCcc-eeehhhHHHHh--cc---ccceeEEEeccceEEEee
Confidence 4577888999999999999999999999976 47899999864 32 234678888888888764
No 41
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=90.55 E-value=1.1 Score=32.31 Aligned_cols=64 Identities=9% Similarity=0.139 Sum_probs=50.6
Q ss_pred hhcCCCeEEEEEcCCC-EEEEEEEEecCccceEEccEEEEccCCCe-eeecCeEEEecCeEEEEecCccc
Q 031941 8 KTAQGHPMLVELKNGE-TYNGHLVNCDTWMNIHLREVICTSKDGDR-FWRMPECYIRGNTIKYLRVPDEV 75 (150)
Q Consensus 8 ~~l~gk~V~VeLKnG~-~~~G~L~~~D~~MNI~L~dv~~t~~~g~~-~~~l~~v~IRGnnIryI~lPd~l 75 (150)
+.++|+.|.|...+.. .|+|.+..+|. -+|+|.++.. +|-+ .....+|.++..-|.-|.|-+..
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr---NGiplk~~~~EVtLsa~DI~~L~IIe~~ 73 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR---NGVPLRKQNAEVVLKCTDIRSIDLIEPA 73 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE---TTEECSCSSSCEEEETTTEEEEEEEECC
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh---cCcCcCCCCceEEEEecchhheeeeccc
Confidence 3678999999999997 99999999995 4599999886 5541 14568899999988887664433
No 42
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=76.65 E-value=3.2 Score=33.60 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCEEEEEEEEecCccceEEcc
Q 031941 11 QGHPMLVELKNGETYNGHLVNCDTWMNIHLRE 42 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~d 42 (150)
+|++|+|++.++.+++|++.++|..-.|.|+.
T Consensus 223 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~ 254 (270)
T 3rux_A 223 IGSRVRVELPGGQDVVGIARDIDDQGRLCLDV 254 (270)
T ss_dssp TTSEEEEECTTSCEEEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEEEEE
Confidence 59999999988999999999999998888864
No 43
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=75.90 E-value=12 Score=26.68 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=42.8
Q ss_pred EEEEcCCCEEEEEEEEecCccceEEccEEEEcc---C-CC----------eeeecCeEEEecCeEEEEecCc
Q 031941 16 LVELKNGETYNGHLVNCDTWMNIHLREVICTSK---D-GD----------RFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 16 ~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~---~-g~----------~~~~l~~v~IRGnnIryI~lPd 73 (150)
.|.|++|+.+.+.+...|.. +.++|..+..+ + ++ ++...+.++||-+.|.|+.-+.
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~ 76 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPK 76 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBC
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCC
Confidence 57899999999999987764 88888887653 1 11 1245788999999999998653
No 44
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=73.20 E-value=3.1 Score=31.53 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=26.0
Q ss_pred HHHhhcCCCeEEEEE----cCCCEEEEEEEEecCc
Q 031941 5 SLLKTAQGHPMLVEL----KNGETYNGHLVNCDTW 35 (150)
Q Consensus 5 ~lL~~l~gk~V~VeL----KnG~~~~G~L~~~D~~ 35 (150)
.-+..++|+.|.|+| .+.+.++|+|.++|..
T Consensus 97 ~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 97 DAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 346788999999999 4559999999999864
No 45
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=71.16 E-value=2.9 Score=32.95 Aligned_cols=47 Identities=15% Similarity=0.038 Sum_probs=33.2
Q ss_pred cCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEec
Q 031941 10 AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRG 63 (150)
Q Consensus 10 l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRG 63 (150)
.++++|+|+..++ ++|++.++|..-.|.|++. ++......++|.+|.
T Consensus 186 ~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~-----~G~~~~~~Gev~~r~ 232 (233)
T 2eay_A 186 YLGEEVKLLGEGK--ITGKLVGLSEKGGALILTE-----EGIKEILSGEFSLRR 232 (233)
T ss_dssp TTTSEEEETTEEE--EEEEEEEECTTSCEEEEET-----TEEEEECSCCEEEC-
T ss_pred ccCCEEEEEECCe--EEEEEEEECCCCeEEEEEC-----CCeEEEEEeEEEEec
Confidence 3699999987765 9999999999988888642 221113456677664
No 46
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=69.00 E-value=9.1 Score=30.12 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=27.1
Q ss_pred cCCCeEEEEEcCCCEEEEEEEEecCccceE
Q 031941 10 AQGHPMLVELKNGETYNGHLVNCDTWMNIH 39 (150)
Q Consensus 10 l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~ 39 (150)
.+|++|+|+..+++.++|++.++|..-.|.
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~ 219 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL 219 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE
Confidence 369999999988887999999999988887
No 47
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=66.07 E-value=10 Score=30.97 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=33.8
Q ss_pred cCCCeEEEEEcCCCEEEEEEEEecCccceEEccEEEEccCCCeeeecCeEEEe
Q 031941 10 AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIR 62 (150)
Q Consensus 10 l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IR 62 (150)
..|++|+|+..+ .+++|++.++|..-.|.|++. ++......++|.+|
T Consensus 271 ~~g~~V~v~~~~-~~~~G~~~gid~~G~L~v~~~-----~g~~~~~~Gev~~r 317 (321)
T 1bia_A 271 FINRPVKLIIGD-KEIFGISRGIDKQGALLLEQD-----GIIKPWMGGEISLR 317 (321)
T ss_dssp TTTSEEEEEETT-EEEEEEEEEECTTSCEEEEET-----TEEEEESSCEEEEC
T ss_pred hcCCEEEEEECC-cEEEEEEEEECCCCeEEEEEC-----CCEEEEEeeeEEEe
Confidence 369999999765 479999999999988888642 22222345667665
No 48
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=56.43 E-value=4.6 Score=27.85 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=20.7
Q ss_pred HHhhcCCCeEEEEEcCCCEEEEEEE
Q 031941 6 LLKTAQGHPMLVELKNGETYNGHLV 30 (150)
Q Consensus 6 lL~~l~gk~V~VeLKnG~~~~G~L~ 30 (150)
.|..+...+|.|+|+||++++|+..
T Consensus 19 ElAc~~~~~l~l~l~dGe~~~g~a~ 43 (86)
T 1sg5_A 19 ELACQHHLMLTLELKDGEKLQAKAS 43 (86)
T ss_dssp HHHHTTTTCEEEECTTTCCEEESSC
T ss_pred HHHHHcCCeEEEEEeCCCEEEEEEE
Confidence 3556679999999999999998654
No 49
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=56.38 E-value=7.7 Score=30.58 Aligned_cols=30 Identities=13% Similarity=0.198 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCEEEEEEEEecCccceEEcc
Q 031941 11 QGHPMLVELKNGETYNGHLVNCDTWMNIHLRE 42 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~d 42 (150)
.|++|+|+..++ ++|++.++|..-.|.|++
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999998777 999999999999998864
No 50
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=55.92 E-value=34 Score=22.87 Aligned_cols=23 Identities=13% Similarity=0.408 Sum_probs=19.9
Q ss_pred CCCeEEEEEcCCCEEEEEEEEec
Q 031941 11 QGHPMLVELKNGETYNGHLVNCD 33 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~~D 33 (150)
+++-|+++-+||..|-|+++...
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd~~ 40 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIIDQT 40 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEC
T ss_pred cCCeEEEEecCCCEEEEEEEecC
Confidence 58999999999999999995433
No 51
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=54.06 E-value=20 Score=25.39 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.9
Q ss_pred CCeEEEEEcCCCEEEEEEE
Q 031941 12 GHPMLVELKNGETYNGHLV 30 (150)
Q Consensus 12 gk~V~VeLKnG~~~~G~L~ 30 (150)
..+|.|+|.+|+.+.||+.
T Consensus 28 q~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 28 QERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp TCEEEEEETTSCEEEEEES
T ss_pred eeEEEEEEcCCCeEeeeec
Confidence 4789999999999999874
No 52
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=51.74 E-value=20 Score=23.17 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCEEEEEEEEecCc
Q 031941 11 QGHPMLVELKNGETYNGHLVNCDTW 35 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~~D~~ 35 (150)
.|+-|++.-+||..|-|+++.+|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 4889999999999999999999765
No 53
>3v4h_A Hypothetical protein; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 2.10A {Yersinia pestis}
Probab=50.26 E-value=23 Score=27.20 Aligned_cols=68 Identities=19% Similarity=0.141 Sum_probs=42.4
Q ss_pred hHHHHhhcCCCeE-EEEEcCCCEEEEEEEEecCccceEEccEEEEccC-----CCeeeecCeEEEecCeEEEEecCcc
Q 031941 3 PLSLLKTAQGHPM-LVELKNGETYNGHLVNCDTWMNIHLREVICTSKD-----GDRFWRMPECYIRGNTIKYLRVPDE 74 (150)
Q Consensus 3 Pl~lL~~l~gk~V-~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~-----g~~~~~l~~v~IRGnnIryI~lPd~ 74 (150)
|+-+...+.|+.+ .|+|+-=++ .|. -..|+.|.|+||..+..+ ......++.|.++=..|.+-+.+.+
T Consensus 91 P~L~~a~~~Ge~l~~v~i~~~R~-gG~---~~~Y~~i~L~~v~Issis~~~~~~~~~~p~E~vsl~Y~kI~w~y~~q~ 164 (185)
T 3v4h_A 91 PNLLSYCLLGKHIKNVQFVLRKA-GGD---PLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQN 164 (185)
T ss_dssp HHHHHHHHHTCCEEEEEEEEEC--------CCEEEEEEEEEEEEEEEEEEEESCC--CCEEEEEEECSEEEEEEEECC
T ss_pred HHHHHHHhCCCccCcEEEEEEEC-CCC---eEEEEEEEEEeEEEEEEEecccCCCCCceEEEEEEEeCEEEEEEEEEC
Confidence 4433334458877 777766555 443 468999999999987531 1122456778888888888776543
No 54
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=46.66 E-value=32 Score=28.23 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=26.6
Q ss_pred cCCCeEEEEEcCCCEEEEEEEEecCccceEEcc
Q 031941 10 AQGHPMLVELKNGETYNGHLVNCDTWMNIHLRE 42 (150)
Q Consensus 10 l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~d 42 (150)
.+|++|+|... +.+++|+..++|..-.|.|++
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 36999999865 568999999999999998863
No 55
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=45.77 E-value=16 Score=31.83 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.6
Q ss_pred CChHHHHhhcC---CCeEEEEEcCC---CEEEEEEEE
Q 031941 1 MLPLSLLKTAQ---GHPMLVELKNG---ETYNGHLVN 31 (150)
Q Consensus 1 MlPl~lL~~l~---gk~V~VeLKnG---~~~~G~L~~ 31 (150)
|.-..||++.- +..|.|+.+++ .+|+|+|+-
T Consensus 1 ~~~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~ 37 (438)
T 1zq1_A 1 MRVDEFLKERNINVGDFVRITKEEDGEEVTYEGYIMP 37 (438)
T ss_dssp -CHHHHHHHTTCCTTCEEEEEEESSSSEEECCEEECC
T ss_pred CchHHHHHhcCCCCCCEEEEEECCCcceeEEEEEEec
Confidence 44567888776 99999999998 899999993
No 56
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=45.04 E-value=26 Score=27.92 Aligned_cols=33 Identities=21% Similarity=0.519 Sum_probs=28.4
Q ss_pred HHHHhhcCCCeEEEEEcCCCEEEEEEEEecCcc
Q 031941 4 LSLLKTAQGHPMLVELKNGETYNGHLVNCDTWM 36 (150)
Q Consensus 4 l~lL~~l~gk~V~VeLKnG~~~~G~L~~~D~~M 36 (150)
+.+=+.|+|+.++.++.++..+.|.|+.+..|+
T Consensus 17 ~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 17 VPLARAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHHHHHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHHHHHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 344567899999999999999999999999887
No 57
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=44.46 E-value=19 Score=24.61 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCEEEEEEEEecCc
Q 031941 11 QGHPMLVELKNGETYNGHLVNCDTW 35 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~~D~~ 35 (150)
+|+-|++.-++|..|-|+|+.+|..
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEeccC
Confidence 5899999999999999999999865
No 58
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=41.04 E-value=37 Score=24.66 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=27.5
Q ss_pred cCCCeEEEEEcCCCEEEEEEEEecC--ccceEEccEEE
Q 031941 10 AQGHPMLVELKNGETYNGHLVNCDT--WMNIHLREVIC 45 (150)
Q Consensus 10 l~gk~V~VeLKnG~~~~G~L~~~D~--~MNI~L~dv~~ 45 (150)
.+|++|..+-+|+..|.++++.... |..+.+.|=..
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F~DgS~ 44 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSF 44 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEETTSCE
T ss_pred ccCCEEEEECCCCCEEeEEEEEEeeEEEEEEEcCCCCc
Confidence 3699999999999999999988753 44555554433
No 59
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.72 E-value=50 Score=21.67 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCEEEEEEEEecCc
Q 031941 11 QGHPMLVELKNGETYNGHLVNCDTW 35 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~~D~~ 35 (150)
+|+-|+..-++|..|-|++..+|.+
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 5889999999999999999999965
No 60
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=37.77 E-value=28 Score=27.98 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=23.2
Q ss_pred EecCccceEEccEEEEccCCCeeeecCeEEEecCeEEEEe
Q 031941 31 NCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLR 70 (150)
Q Consensus 31 ~~D~~MNI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~ 70 (150)
++|..|.++|+|+...+.+...+..-..|.|.+..|..|.
T Consensus 2 ~~~~~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg 41 (418)
T 2qs8_A 2 SLDVDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIK 41 (418)
T ss_dssp -----CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEE
T ss_pred CCCCCccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEe
Confidence 5677778888888877655432222346788888888774
No 61
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=36.89 E-value=46 Score=21.98 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCEEEEEEEEecCc
Q 031941 11 QGHPMLVELKNGETYNGHLVNCDTW 35 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~~D~~ 35 (150)
+|..|+..-.+|..|.|+|..++..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 5889999999999999999999864
No 62
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.42 E-value=51 Score=21.93 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCEEEEEEEEecCc
Q 031941 11 QGHPMLVELKNGETYNGHLVNCDTW 35 (150)
Q Consensus 11 ~gk~V~VeLKnG~~~~G~L~~~D~~ 35 (150)
+|+-|+..-+||..|-|++..+|.+
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 5889999999999999999999854
No 63
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=32.92 E-value=62 Score=23.60 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=23.1
Q ss_pred EcCCCEEEEEE---EEecCccceEEccEEEEcc
Q 031941 19 LKNGETYNGHL---VNCDTWMNIHLREVICTSK 48 (150)
Q Consensus 19 LKnG~~~~G~L---~~~D~~MNI~L~dv~~t~~ 48 (150)
+++..++.|.| ..||..+.++|+|++....
T Consensus 55 vksk~sfKG~L~tYrfcDnVWtfilkd~~fk~~ 87 (121)
T 1nh2_D 55 TQSKLTVKGNLDTYGFCDDVWTFIVKNCQVTVE 87 (121)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred hccCCeEEeeeccccccCcEEEEEEeceEEEec
Confidence 34556777877 4679999999999998753
No 64
>3he1_A Major exported HCP3 protein; structural genomics, APC22128, HCPC, secretion, virule 2, protein structure initiative; 2.10A {Pseudomonas aeruginosa}
Probab=31.46 E-value=38 Score=26.25 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=43.8
Q ss_pred hHHHHhhcCCCeE-EEEEcCCCEE-EEEEEEecCccceEEccEEEEccC----------CCeeeecCeEEEecCeEEEEe
Q 031941 3 PLSLLKTAQGHPM-LVELKNGETY-NGHLVNCDTWMNIHLREVICTSKD----------GDRFWRMPECYIRGNTIKYLR 70 (150)
Q Consensus 3 Pl~lL~~l~gk~V-~VeLKnG~~~-~G~L~~~D~~MNI~L~dv~~t~~~----------g~~~~~l~~v~IRGnnIryI~ 70 (150)
|+-+...+.|+.+ .|+|+-=++- .|. -..|++|.|+||..+... ......++.|.++=..|.+-+
T Consensus 101 P~L~~A~~~Ge~l~~v~l~~yR~~~~G~---~~~Y~~i~L~~v~Issi~~~~~~~~~~~~~~~~p~E~Vsl~Y~kI~w~y 177 (195)
T 3he1_A 101 PLLLAALTSGERLTKVEIQWYRTSAAGT---QEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTH 177 (195)
T ss_dssp HHHHHHHHHTCEEEEEEEEEEEECTTSS---EEEEEEEEEEEEEEEEEEEEEC---------CCEEEEEEEECSEEEEEE
T ss_pred HHHHHHHhCCCccceEEEEEEEeCCCCc---eEEEEEEEEeeeEEEEEEecccccccCCCCCCcceEEEEEEeCEEEEEE
Confidence 3333334458877 6776422211 121 347899999999986531 222246788999999999988
Q ss_pred cCccc
Q 031941 71 VPDEV 75 (150)
Q Consensus 71 lPd~l 75 (150)
.+...
T Consensus 178 ~~~~~ 182 (195)
T 3he1_A 178 EVSGT 182 (195)
T ss_dssp TTTCC
T ss_pred EcCCC
Confidence 88655
No 65
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=30.75 E-value=47 Score=28.91 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=22.3
Q ss_pred HHHHhhcC---CCeEEEEEcCCCEEEEEEEE
Q 031941 4 LSLLKTAQ---GHPMLVELKNGETYNGHLVN 31 (150)
Q Consensus 4 l~lL~~l~---gk~V~VeLKnG~~~~G~L~~ 31 (150)
..||+++. +..|.|+.++ .+|+|+|+-
T Consensus 8 ~~~~~~~~~~~gd~~~~~~~~-~~~~g~~~~ 37 (435)
T 2d6f_A 8 RKFLESASIDVGDMVLVEKPD-VTYEGMVLD 37 (435)
T ss_dssp HHHHHTTTCCTTCEEEEECSS-CEEEEEECC
T ss_pred HHHHHHcCCCCCCEEEEEECC-eEEEEEEec
Confidence 45677665 9999999877 999999993
No 66
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=29.41 E-value=78 Score=22.53 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=22.7
Q ss_pred EcCCCEEEEEE---EEecCccceEEccEEEEc
Q 031941 19 LKNGETYNGHL---VNCDTWMNIHLREVICTS 47 (150)
Q Consensus 19 LKnG~~~~G~L---~~~D~~MNI~L~dv~~t~ 47 (150)
+++..++.|.| ..||..+.++|+|++...
T Consensus 51 vksk~sfKG~L~tYrfcDnVWTf~lkd~~fk~ 82 (108)
T 1nvp_D 51 VRNRVNFRGSLNTYRFCDNVWTFVLNDVEFRE 82 (108)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hccCCeEeeccCCccccCcEEEEEEeceEEEe
Confidence 34556777877 467999999999999874
No 67
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=26.28 E-value=76 Score=24.51 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCEEEEEEEEecCccceEEcc
Q 031941 10 AQGHPMLVELKNGETYNGHLVNCDTWMNIHLRE 42 (150)
Q Consensus 10 l~gk~V~VeLKnG~~~~G~L~~~D~~MNI~L~d 42 (150)
.+|++|+| ++ ++|+..++|..-.|.|+.
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 36999999 44 999999999999998864
No 68
>3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} SCOP: b.157.1.0
Probab=25.40 E-value=25 Score=26.20 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=36.8
Q ss_pred hcCCCeE-EEEEcCCCEEEEEEEEecCccceEEccEEEEccC-----CCeeeecCeEEEecCeEEEEecCc
Q 031941 9 TAQGHPM-LVELKNGETYNGHLVNCDTWMNIHLREVICTSKD-----GDRFWRMPECYIRGNTIKYLRVPD 73 (150)
Q Consensus 9 ~l~gk~V-~VeLKnG~~~~G~L~~~D~~MNI~L~dv~~t~~~-----g~~~~~l~~v~IRGnnIryI~lPd 73 (150)
.+.|+.+ .|+|+-=+. -| .-..|+.+.|+||..+..+ ......++.|.++=..|.+-+.|.
T Consensus 74 ~~~G~~l~~v~i~~~r~-~G---~~~~y~~i~L~~v~Is~i~~~~~~~~~~~p~E~vsl~y~kI~w~y~~q 140 (163)
T 3eaa_A 74 AVQGQNFPTLELEICTQ-AG---DKFAFCIYKFTHVAVSSYQCSGATGGSDRPQETIDFAYKEVTWEYVPQ 140 (163)
T ss_dssp HHHTCCEEEEEEEEECS-ST---TCCEEEEEEEEEEEEEEEEEECCCSSSSSCEEEEEEECSEEECCBCCB
T ss_pred HhCCCccCeEEEEEEEC-CC---CeeEEEEEEEEeEEEEEEEeccccCCCCceEEEEEEEeeEeEEEEEEE
Confidence 3347755 355532222 22 2457999999999986521 122245677888888887766654
No 69
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=24.33 E-value=90 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.520 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCEEEEEEEEecCccceEEccE
Q 031941 13 HPMLVELKNGETYNGHLVNCDTWMNIHLREV 43 (150)
Q Consensus 13 k~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv 43 (150)
..|.|.+.+++.|..+++.+|...+|-|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5799999999999999999999988776554
No 70
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=24.05 E-value=89 Score=26.58 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCEEEEEEEEecCccceEEccE
Q 031941 13 HPMLVELKNGETYNGHLVNCDTWMNIHLREV 43 (150)
Q Consensus 13 k~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv 43 (150)
..|.|.|.++++|..+++.+|...+|-|=.+
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4789999999999999999999998876544
No 71
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=23.97 E-value=71 Score=23.55 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=22.0
Q ss_pred ceEEccEEEEccCCCeeeecCeEEEecCeEEEEe
Q 031941 37 NIHLREVICTSKDGDRFWRMPECYIRGNTIKYLR 70 (150)
Q Consensus 37 NI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI~ 70 (150)
.++|+|+..++.+..++..-..|.|++..|..|.
T Consensus 5 ~lli~ng~i~d~~~~~~~~~~dV~I~~G~I~~Ig 38 (426)
T 3mkv_A 5 TFLFRNGALLDPDHPDLLQGFEILIEDGFIREVS 38 (426)
T ss_dssp EEEEEEEEECCTTSSSCEEEEEEEEETTEEEEEE
T ss_pred cEEEECeEEEeCCCCcEecCcEEEEECCEEEEec
Confidence 5677888777655433223346788888888774
No 72
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=20.87 E-value=1.1e+02 Score=23.88 Aligned_cols=31 Identities=19% Similarity=0.520 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCEEEEEEEEecCccceEEccE
Q 031941 13 HPMLVELKNGETYNGHLVNCDTWMNIHLREV 43 (150)
Q Consensus 13 k~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv 43 (150)
..+.|.+.+++.|...++..|...+|-|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 5789999999999999999999887766443
No 73
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A*
Probab=20.57 E-value=1.1e+02 Score=24.15 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=13.9
Q ss_pred ceEEccEEEEccCCCeeeecCeEEEecCeEEEE
Q 031941 37 NIHLREVICTSKDGDRFWRMPECYIRGNTIKYL 69 (150)
Q Consensus 37 NI~L~dv~~t~~~g~~~~~l~~v~IRGnnIryI 69 (150)
.+.|+|+..++.++..+..-..|.|.+..|..|
T Consensus 5 ~~~i~n~~v~~~~~~~~~~~~~v~I~~g~I~~v 37 (423)
T 3feq_A 5 ITVLQGGNVLDLERGVLLEHHHVVIDGERIVEV 37 (423)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTEEEEE
T ss_pred EEEEEccEEEeCCCCcccCCceEEEECCEEEEe
Confidence 344445444443332222223445555555444
No 74
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=20.16 E-value=23 Score=27.31 Aligned_cols=9 Identities=11% Similarity=0.076 Sum_probs=3.9
Q ss_pred EEEecCeEE
Q 031941 59 CYIRGNTIK 67 (150)
Q Consensus 59 v~IRGnnIr 67 (150)
..|.|..|.
T Consensus 135 ~~~~Gr~l~ 143 (229)
T 3q2s_C 135 RELHGQNPV 143 (229)
T ss_dssp SCBTTBCCE
T ss_pred CeECCEEeE
Confidence 344444443
No 75
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=20.13 E-value=1.1e+02 Score=24.98 Aligned_cols=31 Identities=19% Similarity=0.520 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCEEEEEEEEecCccceEEccE
Q 031941 13 HPMLVELKNGETYNGHLVNCDTWMNIHLREV 43 (150)
Q Consensus 13 k~V~VeLKnG~~~~G~L~~~D~~MNI~L~dv 43 (150)
..|.|.+.+++.|..+++.+|...+|-|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4789999999999999999999888766444
Done!