BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031942
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Query: 5 LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSS 64
L V+ E EA ++ + +RA H E RR A+ A + G+ + FG+L S S
Sbjct: 262 LREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLXVESHRSL 321
Query: 65 IYNYECSEP-LIQLNEILQRAPXXXXXXXXXXXXXXCCLALVDADRAEEAASYVRSEYFE 123
+YE S P L QL E P C + L++A A A +++ Y
Sbjct: 322 RDDYEVSCPELDQLVEAALAVPGVYGSRXTGGGFGGCTVTLLEASAAPHAXRHIQEHYGG 381
Query: 124 LQPELASQLNADSAVLIC 141
SQ AD A ++C
Sbjct: 382 TATFYLSQ-AADGAKVLC 398
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 5 LCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLS 63
L + E ++A+ + + + TL KRA H EN R +A+ +GN FG+L++AS S
Sbjct: 276 LGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHAS 335
Query: 64 SIYNYECSE-PLIQLNEILQRAPXXXXXXXXXXXXXXCCLALVDAD 108
+YE + L L E Q+ C +ALV D
Sbjct: 336 LKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHD 381
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 11/142 (7%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 69
+EV E ++L P K + EN RV + +A K GN ++ GK+++ + NYE
Sbjct: 218 KEVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYE 277
Query: 70 CSEPLIQLNEILQRAPXXXXXXX--XXXXXXXCCLALVDADRAEEAASYVRSEYFELQPE 127
S +L+ ++RA +ALVD + AE + EY + P
Sbjct: 278 VS--CKELDFFVERALKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKRFPW 335
Query: 128 LASQLNADSAVLICKPGDCARV 149
A I +P D +
Sbjct: 336 KARH-------FIVEPSDGVGI 350
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 24 LAKRAEHYFTENRRVAKGLEAWKSGNSQ-------DFGKLISASGLSSIYNYECSEPLIQ 76
L +RA+H ++E+ RV K L+ S DFG+L++ S S YECS I+
Sbjct: 382 LYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECS--CIE 439
Query: 77 LNEI 80
N+I
Sbjct: 440 TNQI 443
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 24 LAKRAEHYFTENRRVAKGLEAWKSGNSQ-------DFGKLISASGLSSIYNYECSEPLIQ 76
L +RA+H ++E+ RV K L+ S DFG+L++ S S YECS I+
Sbjct: 367 LYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECS--CIE 424
Query: 77 LNEI 80
N+I
Sbjct: 425 TNQI 428
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 15/144 (10%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS--GLSSIYN 67
+EV E +L P K + EN RV + +A K G+ + GK+++ + L+ Y
Sbjct: 220 KEVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDALKEGDIEKVGKILTTAHWDLAENYR 279
Query: 68 YECSEPLIQLNEILQRAP--XXXXXXXXXXXXXXCCLALVDADRAEEAASYVRSEYFELQ 125
C E L+ +++A +ALVD D+A+ + EY
Sbjct: 280 VSCEE----LDFFVKKAXELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYL--- 332
Query: 126 PELASQLNADSAVLICKPGDCARV 149
++ + + + KP D V
Sbjct: 333 ----AKFSWKAKYFVVKPSDGVGV 352
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 32.0 bits (71), Expect = 0.14, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 51 QDFGKLISASGLSSIYNYECSEPLIQLNEILQRA 84
Q K I A+G + YE S+P+ Q NE +QRA
Sbjct: 191 QALQKQIKAAGGKDMAAYEASQPVFQENEAIQRA 224
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 24 LAKRAEHYFTENRRVAKGLEAWKSGNS-------QDFGKLISASGLSSIYNYECSEPLI 75
L +RA+H ++E+ RV K ++ + + + FG L++ S S YECS P I
Sbjct: 410 LYQRAKHVYSESLRVLKAVKLMTTASFTADEDFFKQFGALMNESQASCDKLYECSCPEI 468
>pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli
pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli
Length = 404
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 20 LEPTLAKRAEHYFTENRRVAKGL-EAWKSGNSQDFGKLISASGLSSIYNYECSEPLIQLN 78
LE A+ F N RV++ + + W++ K+ ++++ EPL+ LN
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLN 186
Query: 79 EIL 81
++
Sbjct: 187 NVV 189
>pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
pdb|3RFA|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
Length = 404
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 20 LEPTLAKRAEHYFTENRRVAKGL-EAWKSGNSQDFGKLISASGLSSIYNYECSEPLIQLN 78
LE A+ F N RV++ + + W++ K+ ++++ EPL+ LN
Sbjct: 127 LECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLN 186
Query: 79 EIL 81
++
Sbjct: 187 NVV 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,946,427
Number of Sequences: 62578
Number of extensions: 124512
Number of successful extensions: 392
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 10
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)