Query 031942
Match_columns 150
No_of_seqs 108 out of 1033
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:29:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0153 GalK Galactokinase [Ca 100.0 6.3E-36 1.4E-40 247.4 15.8 141 3-150 246-389 (390)
2 PLN02865 galactokinase 100.0 1.2E-35 2.6E-40 251.1 16.8 148 3-150 275-423 (423)
3 PTZ00290 galactokinase; Provis 100.0 4.1E-32 8.9E-37 231.9 15.9 133 11-150 315-456 (468)
4 PRK05101 galactokinase; Provis 100.0 3.6E-31 7.8E-36 221.7 16.7 141 3-150 240-382 (382)
5 PRK05322 galactokinase; Provis 100.0 1.7E-30 3.8E-35 218.0 16.9 141 3-150 245-387 (387)
6 PRK00555 galactokinase; Provis 100.0 1.6E-29 3.5E-34 210.5 17.4 140 3-150 222-362 (363)
7 TIGR00131 gal_kin galactokinas 100.0 7.5E-30 1.6E-34 213.7 15.3 141 3-150 242-386 (386)
8 PLN02521 galactokinase 100.0 2.2E-29 4.8E-34 216.8 13.4 128 22-150 359-494 (497)
9 PRK03817 galactokinase; Provis 99.9 1.1E-26 2.4E-31 192.3 17.3 124 19-150 226-350 (351)
10 KOG0631 Galactokinase [Carbohy 99.8 1E-20 2.2E-25 159.9 11.0 126 22-149 353-486 (489)
11 PF08544 GHMP_kinases_C: GHMP 99.7 1E-16 2.2E-21 106.8 8.8 81 41-122 1-84 (85)
12 PTZ00298 mevalonate kinase; Pr 99.7 1.6E-15 3.4E-20 124.9 15.1 86 37-124 226-313 (328)
13 COG1577 ERG12 Mevalonate kinas 99.7 1.6E-15 3.4E-20 124.0 12.5 91 28-123 202-294 (307)
14 PRK03926 mevalonate kinase; Pr 99.6 2E-14 4.4E-19 116.5 14.9 95 39-149 202-298 (302)
15 PLN02677 mevalonate kinase 99.6 3.1E-14 6.8E-19 119.8 14.4 99 38-149 272-381 (387)
16 TIGR00549 mevalon_kin mevalona 99.6 1.6E-14 3.5E-19 115.2 10.9 67 36-104 206-273 (273)
17 TIGR01220 Pmev_kin_Gr_pos phos 99.5 2.8E-13 6.1E-18 112.9 13.5 86 31-118 250-343 (358)
18 PRK13412 fkp bifunctional fuco 99.5 1.2E-12 2.5E-17 120.0 14.1 86 31-119 860-950 (974)
19 PRK01212 homoserine kinase; Pr 99.4 3.4E-12 7.3E-17 103.5 11.2 106 30-150 193-301 (301)
20 COG0083 ThrB Homoserine kinase 99.4 7.5E-12 1.6E-16 101.9 11.8 108 28-150 187-297 (299)
21 PTZ00299 homoserine kinase; Pr 99.4 4.3E-12 9.2E-17 105.2 10.1 105 30-149 201-321 (336)
22 COG2605 Predicted kinase relat 99.4 1.2E-11 2.5E-16 100.0 12.0 82 38-120 230-313 (333)
23 PLN02451 homoserine kinase 99.3 1.7E-11 3.7E-16 102.8 12.5 106 32-149 255-364 (370)
24 KOG1511 Mevalonate kinase MVK/ 99.2 2.3E-10 5E-15 94.3 12.5 85 52-149 293-379 (397)
25 TIGR00191 thrB homoserine kina 99.2 1.5E-10 3.2E-15 94.4 10.5 106 30-149 193-301 (302)
26 PRK03188 4-diphosphocytidyl-2- 99.1 8.3E-10 1.8E-14 89.7 8.9 95 37-150 197-295 (300)
27 PRK02534 4-diphosphocytidyl-2- 98.9 5.3E-09 1.2E-13 85.5 8.7 102 32-149 205-310 (312)
28 TIGR00144 beta_RFAP_syn beta-R 98.9 4.8E-08 1E-12 80.7 12.6 104 32-150 214-324 (324)
29 PRK00128 ipk 4-diphosphocytidy 98.8 1.3E-08 2.8E-13 82.1 6.8 75 38-119 194-271 (286)
30 KOG1537 Homoserine kinase [Ami 98.8 3.4E-08 7.4E-13 79.2 8.6 106 30-149 240-352 (355)
31 COG1907 Predicted archaeal sug 98.7 4.8E-07 1E-11 73.3 13.5 123 10-149 181-310 (312)
32 PRK14613 4-diphosphocytidyl-2- 98.7 5.5E-08 1.2E-12 79.4 6.9 79 38-123 208-289 (297)
33 PRK01123 shikimate kinase; Pro 98.5 7E-07 1.5E-11 72.2 9.6 86 40-149 195-281 (282)
34 TIGR01920 Shik_kin_archae shik 98.4 1.5E-06 3.3E-11 69.6 8.8 73 36-119 181-253 (261)
35 PRK14616 4-diphosphocytidyl-2- 98.4 9.6E-07 2.1E-11 71.5 7.3 82 36-123 193-276 (287)
36 TIGR00154 ispE 4-diphosphocyti 98.2 4.2E-06 9E-11 68.2 7.4 75 41-121 199-275 (293)
37 TIGR01219 Pmev_kin_ERG8 phosph 98.2 8E-05 1.7E-09 64.3 14.4 73 49-123 353-431 (454)
38 PRK14614 4-diphosphocytidyl-2- 98.1 6.9E-06 1.5E-10 66.4 6.8 46 71-119 222-268 (280)
39 PRK14612 4-diphosphocytidyl-2- 98.1 3.1E-06 6.7E-11 68.2 4.6 72 37-119 189-263 (276)
40 PRK14615 4-diphosphocytidyl-2- 97.9 2.8E-05 6.2E-10 63.4 7.0 46 71-119 240-286 (296)
41 PRK14611 4-diphosphocytidyl-2- 97.7 0.00019 4.1E-09 57.8 7.6 66 35-107 188-254 (275)
42 PRK14608 4-diphosphocytidyl-2- 97.6 0.00011 2.3E-09 59.8 5.3 46 71-119 230-277 (290)
43 PRK14609 4-diphosphocytidyl-2- 97.6 8.2E-05 1.8E-09 60.0 4.2 44 61-107 208-252 (269)
44 PRK14610 4-diphosphocytidyl-2- 97.3 0.00058 1.3E-08 55.4 5.8 47 71-119 222-269 (283)
45 TIGR01240 mevDPdecarb diphosph 96.2 0.092 2E-06 43.2 11.0 89 30-121 204-304 (305)
46 PRK00343 ipk 4-diphosphocytidy 96.1 0.011 2.4E-07 47.7 5.1 45 71-120 217-262 (271)
47 COG1947 IspE 4-diphosphocytidy 95.9 0.02 4.3E-07 46.9 5.5 46 71-119 225-271 (289)
48 PRK00650 4-diphosphocytidyl-2- 94.8 0.067 1.4E-06 43.8 5.4 47 71-120 206-257 (288)
49 PLN02407 diphosphomevalonate d 92.8 0.92 2E-05 38.1 8.7 87 35-123 234-333 (343)
50 KOG4644 L-fucose kinase [Carbo 92.2 1.6 3.5E-05 38.9 9.7 86 25-112 820-913 (948)
51 COG1685 Archaeal shikimate kin 92.2 0.56 1.2E-05 38.1 6.4 77 46-148 197-274 (278)
52 PRK05905 hypothetical protein; 91.1 0.19 4.2E-06 40.4 2.8 31 71-105 223-253 (258)
53 COG3407 MVD1 Mevalonate pyroph 90.4 7.2 0.00016 32.6 11.4 80 39-121 218-308 (329)
54 PF03460 NIR_SIR_ferr: Nitrite 63.6 32 0.0007 21.2 5.5 44 73-119 25-68 (69)
55 PF03991 Prion_octapep: Copper 59.4 4.6 0.0001 15.3 0.5 6 93-98 2-7 (8)
56 COG4542 PduX Protein involved 59.1 99 0.0022 25.3 8.8 63 40-108 201-264 (293)
57 KOG2833 Mevalonate pyrophospha 59.0 1.1E+02 0.0024 25.9 9.9 96 23-123 223-331 (395)
58 PF06698 DUF1192: Protein of u 57.1 28 0.00061 21.7 4.1 40 5-45 18-57 (59)
59 PRK04181 4-diphosphocytidyl-2- 51.1 14 0.0003 29.6 2.6 26 71-106 230-255 (257)
60 COG3890 ERG8 Phosphomevalonate 47.4 1.7E+02 0.0036 24.4 9.7 31 77-108 277-307 (337)
61 KOG4519 Phosphomevalonate kina 47.2 1.6E+02 0.0034 25.3 8.1 63 75-149 386-449 (459)
62 COG4710 Predicted DNA-binding 39.0 73 0.0016 20.9 4.0 60 19-78 11-75 (80)
63 PF15573 Imm27: Immunity prote 38.2 58 0.0013 26.1 4.1 41 22-62 17-60 (259)
64 PF08250 Sperm_act_pep: Sperm- 37.9 15 0.00033 14.9 0.4 8 90-97 2-9 (10)
65 COG1916 Uncharacterized homolo 37.6 84 0.0018 26.9 5.2 77 10-87 27-113 (388)
66 PHA01735 hypothetical protein 36.5 33 0.00071 22.3 2.1 46 8-53 5-50 (76)
67 PF08400 phage_tail_N: Prophag 35.5 1.1E+02 0.0023 22.4 4.8 38 7-44 83-122 (134)
68 COG1514 LigT 2'-5' RNA ligase 34.9 73 0.0016 24.1 4.2 63 61-123 39-111 (180)
69 PF08060 NOSIC: NOSIC (NUC001) 32.6 63 0.0014 19.4 2.8 29 51-79 10-39 (53)
70 COG3064 TolA Membrane protein 29.6 54 0.0012 27.6 2.8 20 91-110 39-60 (387)
71 PF06153 DUF970: Protein of un 28.7 1.4E+02 0.0031 20.9 4.4 50 74-124 13-67 (109)
72 TIGR00511 ribulose_e2b2 ribose 28.7 2.9E+02 0.0064 22.5 7.0 41 88-142 108-148 (301)
73 cd07922 CarBa CarBa is the A s 28.6 1.5E+02 0.0033 19.6 4.4 35 22-56 17-55 (81)
74 TIGR01743 purR_Bsub pur operon 27.4 3.4E+02 0.0073 22.0 7.1 46 77-123 44-91 (268)
75 PF00732 GMC_oxred_N: GMC oxid 26.9 11 0.00024 29.7 -1.6 14 91-104 4-17 (296)
76 PF08002 DUF1697: Protein of u 26.8 2.4E+02 0.0052 20.2 7.7 60 73-143 20-79 (137)
77 PF07022 Phage_CI_repr: Bacter 26.4 46 0.001 20.6 1.5 48 38-87 3-53 (66)
78 PF03369 Herpes_UL3: Herpesvir 26.3 92 0.002 22.5 3.2 36 101-146 71-106 (134)
79 PRK10548 flagellar biosynthesi 26.3 2.4E+02 0.0052 20.0 5.7 39 21-59 57-95 (121)
80 PF03118 RNA_pol_A_CTD: Bacter 25.8 92 0.002 19.5 2.8 42 40-81 22-64 (66)
81 TIGR02957 SigX4 RNA polymerase 25.7 2.7E+02 0.0058 22.1 6.2 11 15-25 104-114 (281)
82 KOG1532 GTPase XAB1, interacts 25.4 33 0.00071 28.6 0.8 53 49-104 205-259 (366)
83 PRK09636 RNA polymerase sigma 25.3 3.5E+02 0.0076 21.5 6.9 13 13-25 109-121 (293)
84 PRK00068 hypothetical protein; 24.1 2.2E+02 0.0048 27.5 6.0 34 32-65 930-964 (970)
85 PRK05325 hypothetical protein; 23.7 68 0.0015 27.7 2.5 34 99-146 288-321 (401)
86 cd06831 PLPDE_III_ODC_like_AZI 23.7 1.5E+02 0.0033 25.0 4.6 41 77-124 193-234 (394)
87 KOG0249 LAR-interacting protei 22.8 3.3E+02 0.0071 25.7 6.6 33 85-117 775-807 (916)
88 PF07023 DUF1315: Protein of u 22.7 81 0.0018 21.6 2.2 20 14-33 2-21 (93)
89 PF13549 ATP-grasp_5: ATP-gras 22.7 3.8E+02 0.0081 20.9 7.5 61 66-126 20-93 (222)
90 COG3143 CheZ Chemotaxis protei 22.6 3.6E+02 0.0078 21.0 5.9 63 3-65 33-101 (217)
91 PRK00411 cdc6 cell division co 22.5 4.4E+02 0.0095 21.6 11.5 112 6-119 268-386 (394)
92 PRK12539 RNA polymerase sigma 21.8 2.5E+02 0.0053 20.5 5.0 28 38-65 8-35 (184)
93 PF12687 DUF3801: Protein of u 21.8 2E+02 0.0043 22.2 4.6 64 51-119 22-89 (204)
94 PRK07758 hypothetical protein; 21.4 1.3E+02 0.0028 20.7 3.0 46 40-86 45-91 (95)
95 PRK09213 pur operon repressor; 21.3 4.3E+02 0.0092 21.5 6.5 46 77-123 46-93 (271)
96 cd06810 PLPDE_III_ODC_DapDC_li 21.2 3.8E+02 0.0081 21.9 6.4 37 86-124 199-236 (368)
97 PRK05377 fructose-1,6-bisphosp 21.0 98 0.0021 25.6 2.7 40 71-117 121-160 (296)
No 1
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-36 Score=247.44 Aligned_cols=141 Identities=37% Similarity=0.562 Sum_probs=135.3
Q ss_pred CCcCCCCHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHH
Q 031942 3 PRLCNVEEEVYEAHKNEL--EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNE 79 (150)
Q Consensus 3 ~~lr~~~~~~l~~~~~~l--~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~ 79 (150)
++|||++.++|.++.+.+ ++..++|++|++.|++|+.++++||+++|+..||++|++||.+||++|++ |||+|+|++
T Consensus 246 ~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~SH~slrddyevt~pElD~lve 325 (390)
T COG0153 246 KSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVE 325 (390)
T ss_pred hhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchhHHHHHH
Confidence 689999999999999999 58899999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCCeeeC
Q 031942 80 ILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 150 (150)
Q Consensus 80 ~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 150 (150)
++....|++|+||||||||||+|+|++++.++++.+.+.+.|++. +|+++.+|+++|++|++++
T Consensus 326 ~a~~~~G~~GaRmTGaGfGGc~IaLv~~~~v~~~~e~v~~~y~~~-------~g~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 326 IALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKV-------TGLKAAFYVVEASQGAGVC 389 (390)
T ss_pred HHHHcCCcccceecCCCCCceEEEEechhhHHHHHHHHHHhHHhh-------cCccccEEEEeccCCcccc
Confidence 998768999999999999999999999999999999999999986 6999999999999999864
No 2
>PLN02865 galactokinase
Probab=100.00 E-value=1.2e-35 Score=251.13 Aligned_cols=148 Identities=74% Similarity=1.210 Sum_probs=142.0
Q ss_pred CCcCCCCHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHH
Q 031942 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEIL 81 (150)
Q Consensus 3 ~~lr~~~~~~l~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a 81 (150)
++||+++.+++.++...+++.+++|++|++.|+.||.+++++|+++|++.||++|++||.|||++|++ ||++|.|++.+
T Consensus 275 ~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a 354 (423)
T PLN02865 275 PLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGLSSIENYECGCEPLIQLYEIL 354 (423)
T ss_pred hhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHH
Confidence 57999999999999988999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCCeeeC
Q 031942 82 QRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 150 (150)
Q Consensus 82 ~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 150 (150)
++..|++|+||||||||||+++|++.+.++++++.|.+.|++.+|.+.++++.++.+|+++|++|++++
T Consensus 355 ~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 355 LKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQPELASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred HhcCCCeEEEEeccCCccEEEEEEchhHHHHHHHHHHHHHHhhccccccccCCCCcEEEEecCCCcccC
Confidence 985699999999999999999999999999999999999999888877778999999999999999875
No 3
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=4.1e-32 Score=231.90 Aligned_cols=133 Identities=20% Similarity=0.300 Sum_probs=122.1
Q ss_pred HHHH-HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHH
Q 031942 11 EVYE-AHKNELEPTLAKRAEHYFTENRRVAKGLEAWK-------SGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEIL 81 (150)
Q Consensus 11 ~~l~-~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~-------~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a 81 (150)
+++. .+...+++..++|++|++.|+.||.+++++|. .+|+..||++|++||.+|+++|+| ||++|.|++.+
T Consensus 315 ~~~~~~~~~~l~~~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~ 394 (468)
T PTZ00290 315 VAFMESCKPLMTPGEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELI 394 (468)
T ss_pred HHHHHHhhhcCCHHHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4553 67788899999999999999999999999995 566999999999999999999999 99999999987
Q ss_pred hhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCCeeeC
Q 031942 82 QRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 150 (150)
Q Consensus 82 ~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 150 (150)
.+..|++|+||||||||||+|+|++++..+++++++.+.|.+. ||..+.+|+++|++|++++
T Consensus 395 ~~~~G~~GaRlTGaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~-------~g~~~~~~~~~~~~Ga~~~ 456 (468)
T PTZ00290 395 NEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKFKAR-------FGVENDVYPVVAGDGAFVV 456 (468)
T ss_pred HHhCCCcEEEEecCCCceEEEEEechhhHHHHHHHHHHHHHHh-------hCCCCcEEEEecCCCcEEE
Confidence 5547999999999999999999999999999999999999885 7999999999999999874
No 4
>PRK05101 galactokinase; Provisional
Probab=99.97 E-value=3.6e-31 Score=221.72 Aligned_cols=141 Identities=30% Similarity=0.443 Sum_probs=132.8
Q ss_pred CCcCCCCHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHH
Q 031942 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEIL 81 (150)
Q Consensus 3 ~~lr~~~~~~l~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a 81 (150)
++||+++.+++......|++..++|+.|++.|+.|+.++.++|+++|++.||++|+++|.+|++.|++ ||++|.|++.+
T Consensus 240 ~~l~~~~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a 319 (382)
T PRK05101 240 KALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIV 319 (382)
T ss_pred HhhhcCCHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHH
Confidence 46899999999999899999999999999999999999999999999999999999999999988999 99999999999
Q ss_pred hhCCCC-eeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCCeeeC
Q 031942 82 QRAPGV-FGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 150 (150)
Q Consensus 82 ~~~~Ga-~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 150 (150)
++.+|+ .|+||||||||||+++|++++.++++++.+.+.|+++ ++..+.+|+++|++|++++
T Consensus 320 ~~~~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 382 (382)
T PRK05101 320 KAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYEAK-------TGLKETFYVCKASQGAGQC 382 (382)
T ss_pred HhccCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHh-------hCCCCeEEEEecCCCcccC
Confidence 984498 4889999999999999999999999999999999985 6999999999999999874
No 5
>PRK05322 galactokinase; Provisional
Probab=99.97 E-value=1.7e-30 Score=217.96 Aligned_cols=141 Identities=35% Similarity=0.538 Sum_probs=133.4
Q ss_pred CCcCCCCHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHH
Q 031942 3 PRLCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEI 80 (150)
Q Consensus 3 ~~lr~~~~~~l~~~~~~l-~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~ 80 (150)
++||+++.+++..+.+.+ ++..++|+.|++.|+.|+..++.+|.++|++.||++|+++|.+|+++|++ +|++|.|++.
T Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~ 324 (387)
T PRK05322 245 KSLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEA 324 (387)
T ss_pred cchhcCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHH
Confidence 578999999999988888 48999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCCeeeC
Q 031942 81 LQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 150 (150)
Q Consensus 81 a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 150 (150)
+++..|++|+||||||||||+++|++.+..+++.+.|.+.|+++ +|..+.+|+++|++|++++
T Consensus 325 a~~~~Ga~garlsGaG~GG~vial~~~~~~~~~~~~l~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 387 (387)
T PRK05322 325 AWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYEEK-------IGYAASFYVAEIGDGAREL 387 (387)
T ss_pred HHhcCCccEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHh-------cCCCCcEEEEecCCCcccC
Confidence 97447999999999999999999999999999999999999985 7999999999999999974
No 6
>PRK00555 galactokinase; Provisional
Probab=99.97 E-value=1.6e-29 Score=210.53 Aligned_cols=140 Identities=32% Similarity=0.391 Sum_probs=131.9
Q ss_pred CCcCCCCHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHH
Q 031942 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEIL 81 (150)
Q Consensus 3 ~~lr~~~~~~l~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a 81 (150)
++||+++.+++.......++..++|+.|++.|+.|+..++.+|.++|++.||++|+++|.++|+.|++ +|++|.|++.+
T Consensus 222 ~~lr~~~~~~~~~~~~~~~~~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a 301 (363)
T PRK00555 222 SSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIADSA 301 (363)
T ss_pred cchhcCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHH
Confidence 47889988888877777788999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCCeeeC
Q 031942 82 QRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 150 (150)
Q Consensus 82 ~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 150 (150)
++ .|++|+||||||||||+++|++.+..+++.+.+.+.|+++ ++..+.+|+++|++|++++
T Consensus 302 ~~-~Ga~GaklsGaG~Gg~vial~~~~~~~~~~~~l~~~y~~~-------~~~~~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 302 VR-AGALGARMTGGGFGGCVIALVPADRAEDVADTVRRAAVTA-------GYPEPAVSRTYAAPGAGEC 362 (363)
T ss_pred Hh-cCCeEEEECCCCccCeEEEEEchhHHHHHHHHHHHHHHHc-------cCCCCcEEEEecCCCcccC
Confidence 98 8999999999999999999999988999999999999985 6899999999999999975
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=99.97 E-value=7.5e-30 Score=213.70 Aligned_cols=141 Identities=26% Similarity=0.390 Sum_probs=129.8
Q ss_pred CCcCCCCHHHHH---HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHH
Q 031942 3 PRLCNVEEEVYE---AHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLN 78 (150)
Q Consensus 3 ~~lr~~~~~~l~---~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~ 78 (150)
+.||+++.+++. +.+..+++..++|+.|++.|+.|+.+++++|.++|++.||++|+++|.+|+++|++ +|++|.++
T Consensus 242 ~~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm~~sh~~l~~~~~vs~peld~lv 321 (386)
T TIGR00131 242 GALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDYECTCPEIDELV 321 (386)
T ss_pred cchhhCCHHHHhhhHhhHhhcCHHHHhhHheeehHHHHHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhcCCCCHHHHHHH
Confidence 378999999887 55778889999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCCeeeC
Q 031942 79 EILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 150 (150)
Q Consensus 79 ~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 150 (150)
+.+...+||+|+||||||||||+++|++++.++++.+++.+.|++. +|.++.+|++++++|++.+
T Consensus 322 ~~a~~~~GAlGakltGaG~GG~vial~~~~~~~~v~~~~~~~y~~~-------~~~~~~~~~~~~~~Ga~~~ 386 (386)
T TIGR00131 322 CSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPKK-------TGLELTFYVIVSKPGAGSC 386 (386)
T ss_pred HHHHhcCCCcEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHh-------hCCCCcEEEEEECCCcCCC
Confidence 8864448999999999999999999999999999999999999764 6999999999999999863
No 8
>PLN02521 galactokinase
Probab=99.96 E-value=2.2e-29 Score=216.79 Aligned_cols=128 Identities=26% Similarity=0.441 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCC
Q 031942 22 PTLAKRAEHYFTENRRVAKGLEAWKSG-----NSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGA 95 (150)
Q Consensus 22 ~~~~~r~~~~v~e~~r~~~~~~aL~~~-----d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGa 95 (150)
+.+++|++|++.|+.||.+++++|+++ ++..||++|++||.+++++|++ ||++|.|++.+++ .|++|+|||||
T Consensus 359 ~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~-~Ga~GaRltGa 437 (497)
T PLN02521 359 FKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRD-NGALGARLTGA 437 (497)
T ss_pred hHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHh-cCCcEEEECCC
Confidence 478899999999999999999999886 3999999999999999999999 9999999999998 89999999999
Q ss_pred CCcceeeeeeccccHHHHHHHHHHHHHhhCh--hhhhhcCCCceEEEeecCCCeeeC
Q 031942 96 GFRGCCLALVDADRAEEAASYVRSEYFELQP--ELASQLNADSAVLICKPGDCARVI 150 (150)
Q Consensus 96 G~GG~vial~~~~~~~~~~~~l~~~y~~~~~--~~~~~~~~~~~~~~~~p~~Ga~v~ 150 (150)
|||||+++|++++..+++++.+.+.|++..| +-.+.++..+.+|+++|++||+++
T Consensus 438 G~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~~~ 494 (497)
T PLN02521 438 GWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAIL 494 (497)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHHHHHhhccccccccccCCCCcEEEEecCCCceEe
Confidence 9999999999999999999999999998632 111236889999999999999873
No 9
>PRK03817 galactokinase; Provisional
Probab=99.95 E-value=1.1e-26 Score=192.28 Aligned_cols=124 Identities=35% Similarity=0.499 Sum_probs=117.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCC
Q 031942 19 ELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGF 97 (150)
Q Consensus 19 ~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~ 97 (150)
.+++.+++|+.|++.|+.|+..++.+|.++|++.||++|+++|++|+++|++ +|++|+|++.+++ .|++|+|||||||
T Consensus 226 ~l~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~-~GalGaklsGaG~ 304 (351)
T PRK03817 226 KLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYEVSCEELDFFVEFALE-LGAYGARLTGAGF 304 (351)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH-cCCCEEEEecCCC
Confidence 5778889999999999999999999999999999999999999999999999 9999999999998 8999999999999
Q ss_pred cceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCCeeeC
Q 031942 98 RGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 150 (150)
Q Consensus 98 GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 150 (150)
|||+++|+++++.+++++.+.+.|... +++.+.+|++.|++|++++
T Consensus 305 Gg~vlal~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~G~~~~ 350 (351)
T PRK03817 305 GGSAIALVDKGKFESIGEELLEEYKKR-------FGIDPKYFVVESSDGVRKI 350 (351)
T ss_pred CeEEEEEEchHHHHHHHHHHHHHHHHh-------cCCCCcEEEEecCCCceeC
Confidence 999999999988999999999999774 6889999999999999985
No 10
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=1e-20 Score=159.91 Aligned_cols=126 Identities=33% Similarity=0.507 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcC
Q 031942 22 PTLAKRAEHYFTENRRVAKGLEAWKSGN------SQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSG 94 (150)
Q Consensus 22 ~~~~~r~~~~v~e~~r~~~~~~aL~~~d------~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisG 94 (150)
.+.++|++|++.|+.|+.++...+.+.+ +..||+|||+||.+.+.+|+. ||++|+|++++++ +|.+|+|+||
T Consensus 353 ~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala-~g~~gaRlTG 431 (489)
T KOG0631|consen 353 KKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALA-NGGVGARLTG 431 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHh-cCCccceeec
Confidence 3457899999999999999998887643 567899999999999999999 9999999999999 8999999999
Q ss_pred CCCcceeeeeeccccHHHHHHHHHHHHHh-hChhhhhhcCCCceEEEeecCCCeee
Q 031942 95 AGFRGCCLALVDADRAEEAASYVRSEYFE-LQPELASQLNADSAVLICKPGDCARV 149 (150)
Q Consensus 95 aG~GG~vial~~~~~~~~~~~~l~~~y~~-~~~~~~~~~~~~~~~~~~~p~~Ga~v 149 (150)
+|||||++++++.+..+.+.+++.+.|++ ..|.++++. .+..++.+.|+.|+.+
T Consensus 432 aGwGGc~v~lvp~d~~~~~~~~~~~~~Y~ka~~~~~~~~-~k~~~~~skp~~g~~l 486 (489)
T KOG0631|consen 432 AGWGGCTVALVPADLVDFAVAALKEIYYEKAYPKFAQDE-LKKALIVSKPAAGVLL 486 (489)
T ss_pred cccccceeeeccccchHHHHHhhhhhhhccccchhhhch-hhceEEEecCchhhhh
Confidence 99999999999999999999998877664 448887754 5556777888888765
No 11
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.70 E-value=1e-16 Score=106.76 Aligned_cols=81 Identities=27% Similarity=0.385 Sum_probs=70.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH-hHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeee-ccccHHHHHHHH
Q 031942 41 GLEAWKSGNSQDFGKLISASGLS-SIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYV 117 (150)
Q Consensus 41 ~~~aL~~~d~~~~g~lm~~s~~~-lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~-~~~~~~~~~~~l 117 (150)
++++|.++|++.|+++|+++|.+ ......+ +|+++.+++.+++ .|++|++|||+|||||+++|+ +.+.++++.+.|
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEE-NGALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-TTESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHH-CCCCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 46899999999999999999874 2223455 9999999999988 899999999999999999999 666799999999
Q ss_pred HHHHH
Q 031942 118 RSEYF 122 (150)
Q Consensus 118 ~~~y~ 122 (150)
.+.|.
T Consensus 80 ~~~~~ 84 (85)
T PF08544_consen 80 REHYK 84 (85)
T ss_dssp HHHTH
T ss_pred HHhCC
Confidence 88775
No 12
>PTZ00298 mevalonate kinase; Provisional
Probab=99.68 E-value=1.6e-15 Score=124.86 Aligned_cols=86 Identities=27% Similarity=0.337 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecc-ccHHHHH
Q 031942 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAA 114 (150)
Q Consensus 37 r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~-~~~~~~~ 114 (150)
.+.++..+|.++|++.++++|+++|+.++ .+++ +|+++++++.+++ .|++|+||||+|+|||+++|+++ +.++++.
T Consensus 226 ~~~~~~~al~~~d~~~lg~~m~~~~~~l~-~~~v~~p~l~~l~~~~~~-~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~ 303 (328)
T PTZ00298 226 CVSEAKEALQKGNLFRVGELMNANHDLCQ-KLTVSCRELDSIVQTCRT-YGALGAKMSGTGRGGLVVALAASEDQRDAIA 303 (328)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHh-CCCceeEeccCCCCeEEEEEecchhhHHHHH
Confidence 45678889999999999999999998887 4788 9999999999998 89999999999999999999976 5688889
Q ss_pred HHHHHHHHhh
Q 031942 115 SYVRSEYFEL 124 (150)
Q Consensus 115 ~~l~~~y~~~ 124 (150)
+.+++.|...
T Consensus 304 ~~l~~~~~~~ 313 (328)
T PTZ00298 304 KAVRARCPEA 313 (328)
T ss_pred HHHHHHhhhc
Confidence 9998888764
No 13
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=99.66 E-value=1.6e-15 Score=124.04 Aligned_cols=91 Identities=21% Similarity=0.325 Sum_probs=73.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeee
Q 031942 28 AEHYFTENRR-VAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 105 (150)
Q Consensus 28 ~~~~v~e~~r-~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~ 105 (150)
...++..... +.++..++.++|.+.||++|+.+|..|. .++| +|++|+|++.+++ .|+.|+|+||||+|||+|+|+
T Consensus 202 ~~~~~~~ig~~~~~a~~al~~~d~e~lgelm~~nq~LL~-~LgVs~~~L~~lv~~a~~-~Ga~gaKlTGAGgGGc~IaL~ 279 (307)
T COG1577 202 IDPILDAIGELVQEAEAALQTGDFEELGELMNINQGLLK-ALGVSTPELDELVEAARS-LGALGAKLTGAGGGGCIIALA 279 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hcCcCcHHHHHHHHHHHh-cCccccccccCCCCceEEEEe
Confidence 3444444444 5678899999999999999999997666 4789 9999999999998 999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHh
Q 031942 106 DADRAEEAASYVRSEYFE 123 (150)
Q Consensus 106 ~~~~~~~~~~~l~~~y~~ 123 (150)
++.+. .+.+.....+
T Consensus 280 ~~~~~---~~~l~~~~~~ 294 (307)
T COG1577 280 KNEEI---AETLSNRLEK 294 (307)
T ss_pred ccchH---HHHHHHHHHh
Confidence 86332 3444444443
No 14
>PRK03926 mevalonate kinase; Provisional
Probab=99.61 E-value=2e-14 Score=116.49 Aligned_cols=95 Identities=25% Similarity=0.389 Sum_probs=80.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHH
Q 031942 39 AKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYV 117 (150)
Q Consensus 39 ~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l 117 (150)
..+..++.++|++.|+++|+.+|. +.+.+++ +|+++++++.+++ .|++|+||||+|+|||++++++++.++++.+.+
T Consensus 202 ~~~~~al~~~d~~~l~~~~~~~~~-~~~~~~~~~p~l~~l~~~~~~-~ga~ga~lSGaG~Gg~v~~l~~~~~~~~~~~~~ 279 (302)
T PRK03926 202 EKGEELILSGDYVSLGELMNINQG-LLDALGVSTKELSELIYAART-AGALGAKITGAGGGGCMVALAAPEKQSEVATAI 279 (302)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHh-CCCceeeeccCCCCCEEEEEeccccHHHHHHHH
Confidence 355688999999999999999995 5566888 9999999999998 899999999999999999999888888777776
Q ss_pred HHHHHhhChhhhhhcCCCceEEEeecC-CCeee
Q 031942 118 RSEYFELQPELASQLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 118 ~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 149 (150)
.+. .+.+++++++ +|++|
T Consensus 280 ~~~--------------~~~~~~~~~~~~G~~i 298 (302)
T PRK03926 280 KIA--------------GGKPIITKITDEGLRI 298 (302)
T ss_pred Hhc--------------CCeEEEEecCCCeeEE
Confidence 642 2467888886 79876
No 15
>PLN02677 mevalonate kinase
Probab=99.59 E-value=3.1e-14 Score=119.79 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=79.3
Q ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecc
Q 031942 38 VAKGLEAWKS---------GNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 107 (150)
Q Consensus 38 ~~~~~~aL~~---------~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~ 107 (150)
+.++.++|.+ +|++.++++|+.+|..|. .++| +|.++.+++.+++ .| +|+|+||||+|||+|+|+++
T Consensus 272 ~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~-~LGVS~~~le~iv~~a~~-~~-~~AKlTGAGgGGC~IaL~~~ 348 (387)
T PLN02677 272 SEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQ-CMGVSHSSIETVLRTTLK-YK-LVSKLTGAGGGGCVLTLLPT 348 (387)
T ss_pred HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHH-cC-CccccccCCCCCEEEEEccc
Confidence 4577788887 569999999999998776 5899 9999999999998 65 79999999999999999986
Q ss_pred ccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeee
Q 031942 108 DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 108 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 149 (150)
+..++.++.+.+++.+. |+ .+|.++++ .|+++
T Consensus 349 ~~~~~~~~~l~~~l~~~--------G~--~~~~~~~g~~Gv~~ 381 (387)
T PLN02677 349 LLSGTVVDKVIAELESS--------GF--QCFTAGIGGNGVQI 381 (387)
T ss_pred ccchhHHHHHHHHHHHC--------CC--eEEEEEeCCCceEE
Confidence 43444445555555553 55 66888877 88876
No 16
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=99.58 E-value=1.6e-14 Score=115.22 Aligned_cols=67 Identities=27% Similarity=0.411 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeee
Q 031942 36 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLAL 104 (150)
Q Consensus 36 ~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial 104 (150)
.++.++..+|.++|++.||++|+++|..+++ +++ +|+++++++.+++ .|++|+||||||+|||+|+|
T Consensus 206 ~~~~~~~~al~~~d~~~lg~l~~~~~~~l~~-~~vs~p~l~~l~~~~~~-~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 206 ELTLEAKAALQDGDVESLGELMNINQGLLKA-LGVSHPKLDQLVETARK-AGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHH-CCCceeeeccCCCCceEEeC
Confidence 3567889999999999999999999988875 799 9999999999998 89999999999999999986
No 17
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.52 E-value=2.8e-13 Score=112.92 Aligned_cols=86 Identities=21% Similarity=0.274 Sum_probs=70.1
Q ss_pred HHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHhHhh-----cCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeee
Q 031942 31 YFTENRR-VAKGLEAWKSGNSQDFGKLISASGLSSIYN-----YEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLA 103 (150)
Q Consensus 31 ~v~e~~r-~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~-----~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~via 103 (150)
++.++.. +.++.++|.++|++.||++|+++|..|+.. .++ +|++++|++.+++ .|+ |+|+||||+|||+|+
T Consensus 250 ~l~~~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~a~~-~ga-~aKlsGAGgGg~~ia 327 (358)
T TIGR01220 250 FLETSTDCVESAITAFETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDAAEA-YGG-AAKPSGAGGGDCGIA 327 (358)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHhh-cCc-eecCCCCCCcCEEEE
Confidence 4444444 557889999999999999999999988863 488 9999999999998 898 999999999999999
Q ss_pred eecccc-HHHHHHHHH
Q 031942 104 LVDADR-AEEAASYVR 118 (150)
Q Consensus 104 l~~~~~-~~~~~~~l~ 118 (150)
+++++. .+++..+|+
T Consensus 328 l~~~~~~~~~~~~~~~ 343 (358)
T TIGR01220 328 ILDAEADITHVRQRWE 343 (358)
T ss_pred EeCCchhHHHHHHHHH
Confidence 997643 444444444
No 18
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.46 E-value=1.2e-12 Score=120.01 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=70.7
Q ss_pred HHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHhHhhc--CC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeec
Q 031942 31 YFTENRR-VAKGLEAWKSGNSQDFGKLISASGLSSIYNY--EC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 106 (150)
Q Consensus 31 ~v~e~~r-~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~--~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~ 106 (150)
.+.+... +.++.++|.++|++.||++|+++|..++. + ++ +|.+|+|++.+++ |++|+|+||||+|||++++++
T Consensus 860 ~l~~ig~La~ea~~ALe~gD~~~LG~LMn~~w~ll~~-L~~GVSnp~LD~Li~~A~~--gAlGaKLTGAGGGGcvI~Lak 936 (974)
T PRK13412 860 LLHEMKAHALDMYEAIQRGEFEEFGRLVGKTWEQNKA-LDSGTNPAAVEAIIELIKD--YTLGYKLPGAGGGGYLYMVAK 936 (974)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHc--CCcEEEecccCcccEEEEEEC
Confidence 3444444 55788999999999999999999987664 5 88 9999999999964 799999999999999999995
Q ss_pred -cccHHHHHHHHHH
Q 031942 107 -ADRAEEAASYVRS 119 (150)
Q Consensus 107 -~~~~~~~~~~l~~ 119 (150)
++..+++.+.+++
T Consensus 937 ~~~~a~~I~~~L~~ 950 (974)
T PRK13412 937 DPGAAERIRKILTE 950 (974)
T ss_pred ChhhHHHHHHHHHh
Confidence 4456677766664
No 19
>PRK01212 homoserine kinase; Provisional
Probab=99.39 E-value=3.4e-12 Score=103.54 Aligned_cols=106 Identities=22% Similarity=0.267 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecc
Q 031942 30 HYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 107 (150)
Q Consensus 30 ~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~ 107 (150)
+.+.+..++..+..+|.++|++.+++.| ++.+++.|+. +|+++++.+.+++ .|++|++|||+| +|+++|+++
T Consensus 193 ~~~~~~~~~~~l~~al~~~d~~~~~~~~---~~~~~~~~~~~~~p~~~~i~~~~~~-~Ga~g~~~SGsG--ptv~~l~~~ 266 (301)
T PRK01212 193 DAVFNSSRAALLVAALYTGDYELAGRAM---KDVLHEPYRAKLIPGFAEVRQAALE-AGALGAGISGAG--PTVFALCDK 266 (301)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHh---chhheHHhHHhhCCCHHHHHHHHHH-CCCeEEEEEchh--hheeEEecc
Confidence 3455667788889999999999999998 4455556633 8999999999998 899999999998 999999987
Q ss_pred ccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeeeC
Q 031942 108 DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARVI 150 (150)
Q Consensus 108 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v~ 150 (150)
+..+++.+.+.+.| .. +..+.+++++++ +|++++
T Consensus 267 ~~~~~~~~~l~~~~-~~--------~~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 267 EDAEKVADALQKAF-LQ--------GIEGFVHVLRLDTAGARVL 301 (301)
T ss_pred ccHHHHHHHHHHhh-cc--------CCCeEEEEeccCCCceEeC
Confidence 66677888887766 21 778899999999 699874
No 20
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.37 E-value=7.5e-12 Score=101.93 Aligned_cols=108 Identities=25% Similarity=0.278 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeee
Q 031942 28 AEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 105 (150)
Q Consensus 28 ~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~ 105 (150)
..+.+.+..++.-++.+|.++|.+.+...| +|.++++|+. .|.++++.+.+++ .|+||+-+||+| +++++++
T Consensus 187 ~~daV~n~s~~a~lv~al~~~~~~l~~~~~---~D~ihepyR~~L~P~~~~v~~~a~~-~gA~g~~lSGAG--PTi~al~ 260 (299)
T COG0083 187 RKDAVFNLSRAALLVAALLEGDPELLRAMM---KDVIHEPYRAKLVPGYAEVREAALE-AGALGATLSGAG--PTVFALA 260 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHh---ccccchhhhhhhCccHHHHHHHHhh-CCceEEEEecCC--CeEEEEe
Confidence 468999999999999999999988888888 6789999998 9999999999998 999999999999 9999999
Q ss_pred ccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeeeC
Q 031942 106 DADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARVI 150 (150)
Q Consensus 106 ~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v~ 150 (150)
++..+++..+.+++.|.+ +..+.++++... +|++++
T Consensus 261 ~~~~~e~~~~~~~~~~~~---------~~~~~~~~~~~~~~G~~~v 297 (299)
T COG0083 261 DESDAEKAAALLEELYEQ---------GIKGRVHILALDSDGARVV 297 (299)
T ss_pred ccchhhHHHHHHHHHHHh---------CCcceEEEEeecCCcceEe
Confidence 887445555555555444 677788887755 887764
No 21
>PTZ00299 homoserine kinase; Provisional
Probab=99.36 E-value=4.3e-12 Score=105.19 Aligned_cols=105 Identities=17% Similarity=0.117 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC---ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeec
Q 031942 30 HYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC---SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 106 (150)
Q Consensus 30 ~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v---~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~ 106 (150)
+.+.+..|+..++.+|.++|++.+.. | ++.++++|+. .|+++++.+.+.+ .|++|+.|||+| +|++++++
T Consensus 201 dav~n~~~~~~lv~al~~~d~~ll~~-~---~D~lhep~R~~~liP~~~~v~~~~~~-~Ga~g~~lSGSG--PTv~al~~ 273 (336)
T PTZ00299 201 DAVFNISRTSILVLALSTGDLRMLKS-C---SDKLHEQQRSDALFPHFRPCVKAARE-AGAHYAFLSGAG--PSVCALVG 273 (336)
T ss_pred HHHHhhhHHHHHHHHHHhCCHHHHHh-c---hhcccCcccccccCccHHHHHHHHHH-CCCeEEEEEchh--hhheEEec
Confidence 77888888888999999999999864 4 4678889983 9999999999998 899999999999 99999997
Q ss_pred c------------ccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeee
Q 031942 107 A------------DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 107 ~------------~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 149 (150)
. +.++++.+++.+.|.+. |..++++++.++ +|+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~G~~~ 321 (336)
T PTZ00299 274 GRHGDPLTQPREERKAESVAEAMIKAAEAV--------GVAGRVIITQPSDQGVHL 321 (336)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHc--------CCceEEEEccCCCCCcEE
Confidence 3 23678999999888764 899999999999 59987
No 22
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.36 E-value=1.2e-11 Score=99.99 Aligned_cols=82 Identities=20% Similarity=0.311 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhHhhc-CC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHH
Q 031942 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNY-EC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAAS 115 (150)
Q Consensus 38 ~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~-~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~ 115 (150)
+.++.++|..+|+..||.+|+++|+..+..- ++ +|.+|.+.+.|++ +||+|+|++|||.||.++.+|++.....+++
T Consensus 230 A~~~~~al~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~-~GA~~gKl~GaG~gGFllf~~~p~k~~~l~r 308 (333)
T COG2605 230 AYEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALK-NGAYGGKLSGAGGGGFLLFFCDPSKRNELAR 308 (333)
T ss_pred HHHHHHHHHhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHh-cCchhceeeccCCccEEEEEeCccchHHHHH
Confidence 3478899999999999999999998666433 56 9999999999999 9999999999999999999999999999998
Q ss_pred HHHHH
Q 031942 116 YVRSE 120 (150)
Q Consensus 116 ~l~~~ 120 (150)
+++.+
T Consensus 309 ~l~~~ 313 (333)
T COG2605 309 ALEKE 313 (333)
T ss_pred HHHHh
Confidence 88864
No 23
>PLN02451 homoserine kinase
Probab=99.34 E-value=1.7e-11 Score=102.80 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecc-c
Q 031942 32 FTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-D 108 (150)
Q Consensus 32 v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~-~ 108 (150)
+.+..++...+.+|.++|++.+++.|+..+ +.++|.. +|+++++++.+++ .|++|++|||+| +|+++|++. +
T Consensus 255 v~~~~~~~~l~~al~~~d~~~l~~~m~nD~--~~e~~r~~~~P~l~~l~~~~~~-~GA~ga~mSGSG--ptvfal~~~~~ 329 (370)
T PLN02451 255 VWNCSQAAALVAAILQGDAVLLGEALSSDK--IVEPTRAPLIPGMEAVKKAALE-AGAYGCTISGAG--PTAVAVIDDEE 329 (370)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhHHHHhhhCccHHHHHHHHHH-CCCeEEEEEccc--hheEEEEcCHH
Confidence 334556667889999999999999996532 3334433 9999999999998 899999999999 999999975 3
Q ss_pred cHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeee
Q 031942 109 RAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 109 ~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 149 (150)
.++++.+.+++.|.+. .+..+.+++++++ .|+++
T Consensus 330 ~a~~i~~~l~~~~~~~-------~~~~~~~~~~~~d~~Ga~v 364 (370)
T PLN02451 330 KGEEVGERMVEAFRKA-------GNLKATASVKKLDRVGARL 364 (370)
T ss_pred HHHHHHHHHHHHHHHh-------cCCCceEEEeccCCCCeEE
Confidence 6888999998888664 2578899999999 69987
No 24
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.22 E-value=2.3e-10 Score=94.35 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhh
Q 031942 52 DFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELAS 130 (150)
Q Consensus 52 ~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~ 130 (150)
.+.+++..+|+.| ..++| +|.+|.++...++ .| +.+|+||||+|||+|++++++..++.++.++++....
T Consensus 293 ~L~eLi~iNq~LL-~alGVsH~~le~v~~~t~k-~g-i~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s~------ 363 (397)
T KOG1511|consen 293 KLEELIRINQDLL-DALGVSHPSLELVCTTTRK-LG-IHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELESH------ 363 (397)
T ss_pred HHHHHHHHhHHHH-HHhCCCcHHHHHHHHHHHH-hC-cceecccCCCCceEEEEECCCCchHHHHHHHHHHHhc------
Confidence 5999999999655 46899 9999999999998 89 7889999999999999999998888888888877764
Q ss_pred hcCCCceEEEeecC-CCeee
Q 031942 131 QLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 131 ~~~~~~~~~~~~p~-~Ga~v 149 (150)
|+ .+|.+..+ .|+++
T Consensus 364 --gf--~v~~t~lGG~G~~v 379 (397)
T KOG1511|consen 364 --GF--EVFETELGGPGVSV 379 (397)
T ss_pred --Cc--ceeeccCCCCceEE
Confidence 44 67888876 88876
No 25
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.20 E-value=1.5e-10 Score=94.36 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecc
Q 031942 30 HYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 107 (150)
Q Consensus 30 ~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~ 107 (150)
+.+.+..++...+.+|.+++++ +++.+.. +.++++|+. +|+++++++.+++ .|++|++|||+| +|+++|+++
T Consensus 193 ~~v~~~~~~~~l~~al~~~~~~-l~~~~~~--d~l~e~~~~~l~p~l~~i~~~~~~-~Ga~g~~lSGsG--ptv~al~~~ 266 (302)
T TIGR00191 193 DLVFNLSHLAGLVHAIYQKKPD-LGAIMMK--DRIHQPYRESLIPNLFKIKQAALE-KGAYGITISGSG--PTILAMADE 266 (302)
T ss_pred HHHHHHHHHHHHHHHHHcCCHH-HHHHHcc--cccchhhHhhhCCCHHHHHHHHHH-CCCeEEEEEchh--hhheEEecc
Confidence 4455566666677899999765 4555543 335566655 9999999999998 899999999999 999999987
Q ss_pred ccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeee
Q 031942 108 DRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 108 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 149 (150)
+...+.+..+.+.++. .+.++.+++++++ +|+++
T Consensus 267 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 267 EFAEQKEQDLLEVLHK--------QGIEGTVHVLDFDNDGARV 301 (302)
T ss_pred hhhHHHHHHHHHHHHh--------cCCCeEEEEcccCCCCeEe
Confidence 6654433333333333 2678999999998 59976
No 26
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.06 E-value=8.3e-10 Score=89.72 Aligned_cols=95 Identities=18% Similarity=0.208 Sum_probs=73.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccc-cHHHH
Q 031942 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEA 113 (150)
Q Consensus 37 r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~-~~~~~ 113 (150)
++..+..++.++|++.+++.|.. .+ +.+.. +|+++++++.+++ .|++|++|||+| +++++|++++ .++++
T Consensus 197 ~~~~~~~al~~~d~~~l~~~~~n---~l-e~~~~~~~p~l~~l~~~~~~-~Galga~lSGsG--~tv~~l~~~~~~~~~~ 269 (300)
T PRK03188 197 EPDPLLAALRAGDPAQLAPLLGN---DL-QAAALSLRPSLRRTLRAGEE-AGALAGIVSGSG--PTCAFLCADADSAVDV 269 (300)
T ss_pred cHHHHHHHHHcCCHHHHHHHhhC---cC-HHHHHHhCchHHHHHHHHHH-CCCCEEEEEccc--cceEEEeCCHHHHHHH
Confidence 46678899999999999999842 23 34544 9999999999998 899999999999 8899999763 35555
Q ss_pred HHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeeeC
Q 031942 114 ASYVRSEYFELQPELASQLNADSAVLICKPG-DCARVI 150 (150)
Q Consensus 114 ~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v~ 150 (150)
.+.+.+ . |....++++++. .|++|+
T Consensus 270 ~~~l~~----~--------g~~~~~~~~~~~~~~~~~~ 295 (300)
T PRK03188 270 AAALSG----A--------GVCRTVRVATGPVPGARVV 295 (300)
T ss_pred HHHHHh----c--------CcceeEEEeeccccceEec
Confidence 555543 2 666778887765 888874
No 27
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.92 E-value=5.3e-09 Score=85.55 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHh-hCCCCeeEEEcCCCCcceeeeeeccc-
Q 031942 32 FTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQ-RAPGVFGARFSGAGFRGCCLALVDAD- 108 (150)
Q Consensus 32 v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~-~~~Ga~GakisGaG~GG~vial~~~~- 108 (150)
+.+..+......+|.++|++.++..| |+.++....- .|++.++.+.++ + .|++|+.|||+| +|++++++..
T Consensus 205 ~~~~~~~~~l~~al~~~d~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~-~Ga~~~~lSGsG--ptv~~l~~~~~ 278 (312)
T PRK02534 205 RRQALRSGPLLQAISAKDPPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSL-PGCLGTMMSGSG--PTCFALFESQE 278 (312)
T ss_pred cccccchhHHHHhhhccCHHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhc-cCCCeeEEECcC--cceEEEeCCHH
Confidence 34455555678899999999999877 6566665544 788888888887 7 899999999999 9999999864
Q ss_pred cHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeee
Q 031942 109 RAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 109 ~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 149 (150)
.++.+.+.+.+.|.. ....+++++++ .|++|
T Consensus 279 ~a~~~~~~l~~~~~~----------~~~~v~i~~~~n~G~~v 310 (312)
T PRK02534 279 QAEQALEQVREAFAD----------PGLDAWVCQFISHGIQL 310 (312)
T ss_pred HHHHHHHHHHHHhcc----------CceEEEEEEecCCCcee
Confidence 567777777664432 23478899988 69875
No 28
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=98.87 E-value=4.8e-08 Score=80.66 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=78.5
Q ss_pred HHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHH----HhHhhcCCChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeee
Q 031942 32 FTENRRVA--KGLEAWKSGNSQDFGKLISASGL----SSIYNYECSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 105 (150)
Q Consensus 32 v~e~~r~~--~~~~aL~~~d~~~~g~lm~~s~~----~lr~~~~v~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~ 105 (150)
+.+..++. .++.+|.++|++.|++.|++-+. .++++|+ .|.+..+.+.+.+ ++|+-|||+| +|+++|+
T Consensus 214 v~~~~~~~l~~l~~al~~~d~~~~~~~l~d~~~~~f~~~~~~~r-~~li~~~~~~l~~---a~g~~iSGsG--PTv~al~ 287 (324)
T TIGR00144 214 VERICHLILMKMMPAVVEGDLDAFGESVNEIQGLGFKKIERELQ-DPLIKRIIDSMIS---APGAGMSSFG--PTVYAVT 287 (324)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcchhhhcccc-CHHHHHHHHHHHh---ccCceecCCC--CeEEEEe
Confidence 35555653 35899999999999999976442 3444454 6666666666654 4889998877 9999999
Q ss_pred ccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeeeC
Q 031942 106 DADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARVI 150 (150)
Q Consensus 106 ~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v~ 150 (150)
+.+ ++++.+.+.+.|... +..+.+++++++ .|++|.
T Consensus 288 ~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~n~Ga~v~ 324 (324)
T TIGR00144 288 DEK-PGNIAGAVADIFGPY--------GVYGRIIVTKARNRGAFII 324 (324)
T ss_pred cCc-hHHHHHHHHHHhhhC--------CCceEEEEEccCCCCCEeC
Confidence 764 778888888877653 788999999999 699873
No 29
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.80 E-value=1.3e-08 Score=82.11 Aligned_cols=75 Identities=23% Similarity=0.268 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccc-cHHHHH
Q 031942 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAA 114 (150)
Q Consensus 38 ~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~-~~~~~~ 114 (150)
+..+..++.++|++.++.+|+ +.+ +.+++ .|+++++++.+++ .|++|++|||+| ||+++|++.+ .++++.
T Consensus 194 ~~~~~~~l~~~d~~~~~~~~~---n~l-~~~~~~~~p~l~~l~~~~~~-~Ga~g~~lSGsG--~sv~~l~~~~~~~~~i~ 266 (286)
T PRK00128 194 TEKLIEAIEEGDYQGICANMG---NVL-ENVTLKKYPEIAKIKERMLK-FGADGALMSGSG--PTVFGLFDDESRAQRIY 266 (286)
T ss_pred hHHHHHHHhcCCHHHHHHhcc---CcH-HHHHHhhChHHHHHHHHHHh-cCCCeeEEcccC--ccEEEEeCCHHHHHHHH
Confidence 556788999999999999984 345 55666 9999999999998 899999999999 9999999764 466666
Q ss_pred HHHHH
Q 031942 115 SYVRS 119 (150)
Q Consensus 115 ~~l~~ 119 (150)
+.+++
T Consensus 267 ~~l~~ 271 (286)
T PRK00128 267 NGLKG 271 (286)
T ss_pred HHhHh
Confidence 66654
No 30
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=98.78 E-value=3.4e-08 Score=79.18 Aligned_cols=106 Identities=25% Similarity=0.258 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHcC-C-HHHHHHHHHHHHHHhHhhcCC--ChHHHHHHHHHhhC--CCCeeEEEcCCCCcceeee
Q 031942 30 HYFTENRRVAKGLEAWKSG-N-SQDFGKLISASGLSSIYNYEC--SEPLIQLNEILQRA--PGVFGARFSGAGFRGCCLA 103 (150)
Q Consensus 30 ~~v~e~~r~~~~~~aL~~~-d-~~~~g~lm~~s~~~lr~~~~v--~p~~d~l~~~a~~~--~Ga~GakisGaG~GG~via 103 (150)
|.+.+.+|+.....||..+ | ......+| ++..+++|+. +|.+..+.+.+... +|.+|..+||+| ++++|
T Consensus 240 d~V~NlqrlA~LttAl~~~p~n~~L~y~~m---~DkvhqPyRa~LIPGl~~il~~~~p~t~pGl~GiclSGAG--PT~lA 314 (355)
T KOG1537|consen 240 DHVWNLQRLAALTTALLEGPDNVMLGYALM---SDKVHQPYRAPLIPGLEAILKAALPATYPGLFGICLSGAG--PTALA 314 (355)
T ss_pred eeeecHHHHHHHHHHHhcCCCchhhhhhhh---hccccCccccccCccHHHHHHhhCcccCCceeeEEecCCC--CeeEE
Confidence 6677888888888888877 4 55555677 6778899999 99999999998862 499999999999 99999
Q ss_pred eeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeee
Q 031942 104 LVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 104 l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 149 (150)
+.. ++-+++.+.|-+.|.+. |.++.+..++|. +||.+
T Consensus 315 lat-enf~eI~~~mv~~F~K~--------G~kcs~~~l~pa~Dga~v 352 (355)
T KOG1537|consen 315 LAT-ENFQEIGEKMVEAFWKV--------GHKCSVASLKPALDGAGV 352 (355)
T ss_pred Eec-CcHHHHHHHHHHHHHhh--------CceeeeEeeccccCCcce
Confidence 996 78999999999999986 999999999988 88754
No 31
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=98.72 E-value=4.8e-07 Score=73.35 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=94.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---HhhcCC---ChHHHHHHHHHhh
Q 031942 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSS---IYNYEC---SEPLIQLNEILQR 83 (150)
Q Consensus 10 ~~~l~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~l---r~~~~v---~p~~d~l~~~a~~ 83 (150)
++++......+|.+...++-|++- ..+..++..+|++.||+.|++-|... .+..+. |+.+.++++.+.+
T Consensus 181 E~~if~~~~p~p~~~~~~ls~~vL-----m~mmPavvE~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~ 255 (312)
T COG1907 181 EVDIFKKYCPVPLEEVGELSHRVL-----MKMMPAVVERDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVE 255 (312)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHH-----HHHhHHHHhhCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHH
Confidence 445555555666666666555542 36778999999999999999988866 333344 6778999999998
Q ss_pred CCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeee
Q 031942 84 APGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 84 ~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 149 (150)
+ +||+-+| -||+++.+++++....+++..+.+.+.++ |....+++++|. .||.+
T Consensus 256 -~-a~~agqS--SwGPtvY~i~d~~~~~~~~~~~~~~~~~~--------g~~gev~vT~~rN~Ga~i 310 (312)
T COG1907 256 -A-AYGAGQS--SWGPTVYGIVDSREAGSVVRKLIDILLEE--------GIGGEVFVTKARNRGAEI 310 (312)
T ss_pred -h-ccccccc--ccCCEEEEeccccccchHHHHHHHHHHhc--------CCceEEEEeccCCCCcee
Confidence 6 7888886 68899999999888777777777777664 899999999998 88865
No 32
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.67 E-value=5.5e-08 Score=79.35 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=61.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecc-ccHHHHH
Q 031942 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAA 114 (150)
Q Consensus 38 ~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~-~~~~~~~ 114 (150)
...++.+|.++|++.+...| ++.+ ++|.. +|+++++.+.+.+ .|++|++|||+| +|++++++. +.++++.
T Consensus 208 ~~~~~~al~~~~~~~l~~~l---~ndl-e~~~~~l~P~~~~i~~~~~~-~Ga~~~~mSGSG--ptvf~l~~~~~~a~~~~ 280 (297)
T PRK14613 208 SEDLISSLKVGDWVSLQGRL---ENDF-EPVAFQLHPELGVLKDKFLE-FGSSYCSLTGSG--SSMYGLVQGLEIQEELL 280 (297)
T ss_pred HHHHHHHHHcCCHHHHHHHh---cccc-hHHHHHhCcHHHHHHHHHHH-cCCCEEEEEccc--cceEEEeCCHHHHHHHH
Confidence 44577889999999886654 2233 44444 9999999999998 899999999998 999999986 4577787
Q ss_pred HHHHHHHHh
Q 031942 115 SYVRSEYFE 123 (150)
Q Consensus 115 ~~l~~~y~~ 123 (150)
+.+++.|.+
T Consensus 281 ~~l~~~~~~ 289 (297)
T PRK14613 281 PRLRQEFSN 289 (297)
T ss_pred HHHHHhhcc
Confidence 777766554
No 33
>PRK01123 shikimate kinase; Provisional
Probab=98.53 E-value=7e-07 Score=72.18 Aligned_cols=86 Identities=23% Similarity=0.280 Sum_probs=59.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHH
Q 031942 40 KGLEAWKSGNSQDFGKLISASGLSSIYNYECSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 119 (150)
Q Consensus 40 ~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~ 119 (150)
++..++.++|+. .+|+.++...+..+ .|. .+++..+++ .|++|+++||+| ||+++|++++..+++.+.+++
T Consensus 195 ~~~~~~~~~~l~---~~~~~~~l~~~~~l--~~~-~~~i~~a~~-~Ga~ga~lSGaG--ptv~al~~~~~~~~v~~~l~~ 265 (282)
T PRK01123 195 MAFELALDGEYF---KAMTLNGLLYSSAL--GFP-TEPALEALE-AGAVGVGLSGTG--PSYVAIVDEEDPEEVKEAWEK 265 (282)
T ss_pred HHHHHHhhccHH---HHHHhCCchhhhhh--CCC-hHHHHHHHH-CCCeEEEEecCC--CeEEEEeCCCCHHHHHHHHHh
Confidence 344555667774 67766432222222 444 355566777 899999999876 999999988888887777775
Q ss_pred HHHhhChhhhhhcCCCceEEEeecC-CCeee
Q 031942 120 EYFELQPELASQLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 120 ~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 149 (150)
. ..+++++++ .|+++
T Consensus 266 ~---------------~~~~~~~~~~~G~~v 281 (282)
T PRK01123 266 Y---------------GKVIVTKINNEGARI 281 (282)
T ss_pred C---------------CEEEEeeecCCCcee
Confidence 1 478889988 88876
No 34
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=98.42 E-value=1.5e-06 Score=69.64 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHH
Q 031942 36 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAAS 115 (150)
Q Consensus 36 ~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~ 115 (150)
..+.++.++++.+|+. ++|+.+|..+..-.++. +++++.+++ .|++|++|||+| |||++|+++. +++.+
T Consensus 181 ~~~~~~~~~~~~~~l~---~am~~n~~l~~~~lg~~---~~~i~~a~~-~Galga~lSGaG--~sv~aL~~~~--~~v~~ 249 (261)
T TIGR01920 181 PVVEEAFNLALRGEYL---KAMVLNGVAYATALGYP---LEPASKALE-AGAAAAGLSGKG--PSYFALTEDP--EEAAE 249 (261)
T ss_pred hHHHHHHHHHhhCCHH---HHHhhChHHhHHhhCCC---hHHHHHHHH-cCCcEEeecCCC--CeEEEEeCCH--HHHHH
Confidence 3455666788888876 88888885332333331 135677887 899999999986 9999998754 56666
Q ss_pred HHHH
Q 031942 116 YVRS 119 (150)
Q Consensus 116 ~l~~ 119 (150)
+|++
T Consensus 250 ~~~~ 253 (261)
T TIGR01920 250 ALME 253 (261)
T ss_pred HHHh
Confidence 6654
No 35
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.40 E-value=9.6e-07 Score=71.51 Aligned_cols=82 Identities=20% Similarity=0.291 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecc-ccHHHH
Q 031942 36 RRVAKGLEAWKS-GNSQDFGKLISASGLSSIYNYECSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEA 113 (150)
Q Consensus 36 ~r~~~~~~aL~~-~d~~~~g~lm~~s~~~lr~~~~v~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~-~~~~~~ 113 (150)
.++...+.++.+ ++++.++.++|+-+ ..+... .|+++++.+.+++ .|++|+.|||+| +|+++|+++ +.++++
T Consensus 193 ~~~~~l~~~l~~~~~~~l~~~~~nD~e-~~~~~l--~p~l~~v~~~~~~-~Galg~~lSGSG--ptv~al~~~~~~a~~i 266 (287)
T PRK14616 193 PDLKTLVRRLCLDGDTSVLPAFENDFE-SAVFDH--YPAVRKVKDDLLE-AGSFFASLSGSG--SAVFGLFENEADAEAA 266 (287)
T ss_pred chHHHHHHHHhcCCHHHHHHHhcCccH-HHHHHh--ChHHHHHHHHHHh-CCCCeEEEeccc--ccceEEeCCHHHHHHH
Confidence 344445555554 56777766554332 222222 8999999999998 899999999999 999999986 467888
Q ss_pred HHHHHHHHHh
Q 031942 114 ASYVRSEYFE 123 (150)
Q Consensus 114 ~~~l~~~y~~ 123 (150)
.+.+++.|..
T Consensus 267 ~~~l~~~~~~ 276 (287)
T PRK14616 267 AEMMRARYRT 276 (287)
T ss_pred HHHhHHhCcc
Confidence 8888887765
No 36
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=98.23 E-value=4.2e-06 Score=68.16 Aligned_cols=75 Identities=20% Similarity=0.066 Sum_probs=52.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecccc-HHHHHHHHH
Q 031942 41 GLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVR 118 (150)
Q Consensus 41 ~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~~~l~ 118 (150)
...++..++++.+...+ |+.+...... +|+++++++.+++ .|++|++|||+| +|+++|++.+. +.++.+.+.
T Consensus 199 l~~~~~~~~~~~~~~~~---~ndle~~~~~~~p~l~~i~~~l~~-~Ga~~a~mSGSG--~tvf~l~~~~~~a~~~~~~~~ 272 (293)
T TIGR00154 199 WLKKISLECLQLLDSNG---LNDLEKVALKRHTEVAQALNWLLE-YGLAPERLSGSG--ACVFALFDMESEAEQVLEQAP 272 (293)
T ss_pred HHHHHhhccHHHHhhhh---cCccHHHHHhcCHHHHHHHHHHHh-CCCCeEEEeccc--cceEEEeCCHHHHHHHHHHhH
Confidence 44555556665554332 4444433322 7999999999998 899999999998 99999998654 566666555
Q ss_pred HHH
Q 031942 119 SEY 121 (150)
Q Consensus 119 ~~y 121 (150)
+.+
T Consensus 273 ~~~ 275 (293)
T TIGR00154 273 EWL 275 (293)
T ss_pred HHh
Confidence 443
No 37
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=98.17 E-value=8e-05 Score=64.27 Aligned_cols=73 Identities=15% Similarity=0.060 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHHhHhh---c--CC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHH
Q 031942 49 NSQDFGKLISASGLSSIYN---Y--EC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 122 (150)
Q Consensus 49 d~~~~g~lm~~s~~~lr~~---~--~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~ 122 (150)
|+..+.+.+.++-..|++. - .| .|++-+|.+.+.+..|++|++.+|||+|-|+++|+..+. ++++.+.+.|.
T Consensus 353 ~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~--~~~~~~~~~W~ 430 (454)
T TIGR01219 353 ELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDV--DSGTKLTQAWS 430 (454)
T ss_pred cHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEEEEecCCh--HHHHHHHHHHh
Confidence 7777888887777667632 2 34 788899999999888999999999999999999986643 24455666665
Q ss_pred h
Q 031942 123 E 123 (150)
Q Consensus 123 ~ 123 (150)
.
T Consensus 431 ~ 431 (454)
T TIGR01219 431 S 431 (454)
T ss_pred h
Confidence 4
No 38
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.14 E-value=6.9e-06 Score=66.39 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecccc-HHHHHHHHHH
Q 031942 71 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 119 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~~~l~~ 119 (150)
.|+++++++.+++ .|++|++|||+| ||++++++++. ++++.+.+.+
T Consensus 222 ~p~l~~i~~~~~~-~Galga~lSGSG--~tv~~l~~~~~~~~~~~~~l~~ 268 (280)
T PRK14614 222 FPVIGEIKEELLA-AGARGSLMSGSG--STVFGLFDDEAAARAAAEELSR 268 (280)
T ss_pred ChHHHHHHHHHHh-CCCCEEEEeccc--cceEEEeCCHHHHHHHHHHhhh
Confidence 7999999999998 899999999998 99999998754 5555555544
No 39
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.12 E-value=3.1e-06 Score=68.18 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecccc-HHHH
Q 031942 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEA 113 (150)
Q Consensus 37 r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~ 113 (150)
++..+..+|.++|...+...| +++.. +|+++++++.+++ .|++|++|||+| +|+++|++++. ++++
T Consensus 189 ~~~~l~~~l~~~d~~~~~n~l--------~~~~~~~~p~l~~i~~~l~~-~Ga~~~~lSGsG--ptvfal~~~~~~a~~~ 257 (276)
T PRK14612 189 DVEAILAALARGEEPPYWNSL--------EGPVFARHPELQEVLAALRA-AGLRGVLMSGSG--STCFGLAEDAAQAQRA 257 (276)
T ss_pred cHHHHHHHHHhcccccccCCc--------HHHHHHhChHHHHHHHHHHh-CCCCEEEEcCcc--hhhEEEeCCHHHHHHH
Confidence 456667778777743322222 22332 8999999999998 899999999999 99999997643 6666
Q ss_pred HHHHHH
Q 031942 114 ASYVRS 119 (150)
Q Consensus 114 ~~~l~~ 119 (150)
.+.+++
T Consensus 258 ~~~l~~ 263 (276)
T PRK14612 258 AAALRA 263 (276)
T ss_pred HHHhHh
Confidence 666655
No 40
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.94 E-value=2.8e-05 Score=63.39 Aligned_cols=46 Identities=30% Similarity=0.416 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccc-cHHHHHHHHHH
Q 031942 71 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRS 119 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~-~~~~~~~~l~~ 119 (150)
.|+++++.+.+.+ .|++|++|||+| +|+++|++++ .++++.+.+.+
T Consensus 240 ~P~l~~~~~~~~~-~GAlga~mSGSG--ptvfaL~~~~~~a~~i~~~l~~ 286 (296)
T PRK14615 240 HPELRRLKETLLR-HGAAAALMSGSG--SSVFGLFRRRAQAEAAFEMLKG 286 (296)
T ss_pred ChHHHHHHHHHHh-cCCCEEEEeccC--cceEEEeCCHHHHHHHHHHHhh
Confidence 9999999999998 899999999999 9999998754 35566655554
No 41
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.67 E-value=0.00019 Score=57.84 Aligned_cols=66 Identities=11% Similarity=0.111 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecc
Q 031942 35 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 107 (150)
Q Consensus 35 ~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~ 107 (150)
..+...+..++.++|++.++..+ ++.|++++.- .|++.++.+...+ .| +|+.|||+| +|++++++.
T Consensus 188 ~~~~~~l~~~l~~~~~~~~~~~~---~n~l~~~~~~~~P~l~~~~~~l~~-~~-~~~~~SGSG--~tvf~l~~~ 254 (275)
T PRK14611 188 KEDLNIIISLLREGEEKKIEEVI---ENTLGEIALELYPEIKEVYRFLEY-LG-YKPFVSGSG--SSVYVFGKP 254 (275)
T ss_pred cchHHHHHHHHHcCCHHHHHHhc---CCcccHHHHHHCHHHHHHHHHHHh-CC-CCEEEeCcc--ccceeEeCC
Confidence 44556678899999999888776 5678888866 9999999887655 55 599999999 999999943
No 42
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.61 E-value=0.00011 Score=59.81 Aligned_cols=46 Identities=30% Similarity=0.478 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHhhCC-CCeeEEEcCCCCcceeeeeecccc-HHHHHHHHHH
Q 031942 71 SEPLIQLNEILQRAP-GVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 119 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~-Ga~GakisGaG~GG~vial~~~~~-~~~~~~~l~~ 119 (150)
+|+++++.+.+.+ . |++|++|||+| +|++++++++. ++++.+.+++
T Consensus 230 ~p~l~~i~~~~~~-~~Ga~~~~lSGSG--stvf~l~~~~~~a~~~~~~l~~ 277 (290)
T PRK14608 230 APVIGEVLAALRA-QPGALLARMSGSG--ATCFALFADEAAAEAAAAAIAA 277 (290)
T ss_pred CcHHHHHHHHHHh-cCCCCeeEEeccc--cCeEEEeCCHHHHHHHHHHhHh
Confidence 8999999999998 8 99999999999 99999997643 6666666554
No 43
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.58 E-value=8.2e-05 Score=59.95 Aligned_cols=44 Identities=18% Similarity=0.173 Sum_probs=36.9
Q ss_pred HHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecc
Q 031942 61 GLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 107 (150)
Q Consensus 61 ~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~ 107 (150)
|+.++..... .|+++++.+.+++ .|++|++|||+| +|+++++++
T Consensus 208 ~Ndle~~~~~~~p~l~~i~~~l~~-~ga~~~~mSGSG--~tvf~l~~~ 252 (269)
T PRK14609 208 VNDFEDSVFPKYPEIAEIKEKLYR-SGALYAAMSGSG--SSVFGIFKK 252 (269)
T ss_pred CCChHHHHHHcChHHHHHHHHHHh-CCCCeEEEeCcc--ceeEEEECC
Confidence 4445555555 8999999999988 899999999998 999999975
No 44
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.28 E-value=0.00058 Score=55.37 Aligned_cols=47 Identities=30% Similarity=0.540 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecc-ccHHHHHHHHHH
Q 031942 71 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRS 119 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~-~~~~~~~~~l~~ 119 (150)
+|++.++.+...+..|++++.|||+| +|+++++++ +.++++.+.+.+
T Consensus 222 ~P~l~~~~~~l~~~~ga~~a~mSGSG--sTvf~l~~~~~~a~~~~~~l~~ 269 (283)
T PRK14610 222 VPEIEEILFVLESLEGCILSRMSGSG--ATCFALFEEEEAAEAAARYLKM 269 (283)
T ss_pred ChHHHHHHHHHHhcCCCceEEEeCcc--cceeEEeCCHHHHHHHHHHhhh
Confidence 99999999987653589999999999 999999976 345566555553
No 45
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=96.19 E-value=0.092 Score=43.22 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=63.9
Q ss_pred HHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--------ChHH---HHHHHHHhhCCCCeeEEEcCCCC
Q 031942 30 HYFTENR-RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--------SEPL---IQLNEILQRAPGVFGARFSGAGF 97 (150)
Q Consensus 30 ~~v~e~~-r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--------~p~~---d~l~~~a~~~~Ga~GakisGaG~ 97 (150)
..+.+.. ++..+++++.++|++.||++...+-..||.-+-- .|+. -+++...++ .|.-..-..=||
T Consensus 204 ~~v~~~~~~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~-~g~~~~~T~DAG- 281 (305)
T TIGR01240 204 EWIEHVVPDFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQ-GGTICYFTMDAG- 281 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHh-CCCcEEEEEcCC-
Confidence 3444443 5788999999999999999887776677732211 3433 344555565 576666667788
Q ss_pred cceeeeeeccccHHHHHHHHHHHH
Q 031942 98 RGCCLALVDADRAEEAASYVRSEY 121 (150)
Q Consensus 98 GG~vial~~~~~~~~~~~~l~~~y 121 (150)
+.+..|+++++.+++.+.+.+.|
T Consensus 282 -pNv~vl~~~~~~~~v~~~~~~~~ 304 (305)
T TIGR01240 282 -PNVKVLYLAENLSKLFEFIYKLF 304 (305)
T ss_pred -CCEEEEEccccHHHHHHHHHHhc
Confidence 99999999999999988887654
No 46
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.10 E-value=0.011 Score=47.66 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecccc-HHHHHHHHHHH
Q 031942 71 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRSE 120 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~~~l~~~ 120 (150)
.|++.++.+.+.+ .|+ +.|||+| +|+++++++.. ++.+.+.+++.
T Consensus 217 ~P~~~~~~~~l~~-~ga--~~mSGSG--~tvF~l~~~~~~a~~~~~~l~~~ 262 (271)
T PRK00343 217 YPEVAQALSWLLE-YAP--SRMTGTG--ACVFAEFDTEAEAEQVLAQLPEW 262 (271)
T ss_pred ChHHHHHHHHHHh-CCC--eEEeccc--cceEEEcCCHHHHHHHHHHhhhh
Confidence 8999999998887 788 8899999 99999997643 55555555543
No 47
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=95.87 E-value=0.02 Score=46.89 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecccc-HHHHHHHHHH
Q 031942 71 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASYVRS 119 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~~~l~~ 119 (150)
.|++........+ .|+.+++|||+| .|++++++.+. ++++.+.+.+
T Consensus 225 ~p~v~~~~~~l~~-~ga~~~~mSGSG--stvF~l~~~~~~a~~~~~~l~~ 271 (289)
T COG1947 225 YPEVKEALSELLE-YGALPARMSGSG--STVFALFDTEKEAQRVAEQLPK 271 (289)
T ss_pred ChHHHHHHHHHhh-cccccceEecCC--CcEEEEeCChHHHHHHHHHhhc
Confidence 5788776666665 699999999999 99999998765 4444444443
No 48
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=94.80 E-value=0.067 Score=43.78 Aligned_cols=47 Identities=9% Similarity=0.065 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHhhCCCC-ee--EEEcCCCCcceeeeeecccc-HHHHH-HHHHHH
Q 031942 71 SEPLIQLNEILQRAPGV-FG--ARFSGAGFRGCCLALVDADR-AEEAA-SYVRSE 120 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~Ga-~G--akisGaG~GG~vial~~~~~-~~~~~-~~l~~~ 120 (150)
.|++.++.+...+ .|+ +| ++|||+| .|++++++++. ++++. +.+++.
T Consensus 206 ~p~i~~~~~~l~~-~~~~~~~~~~MSGSG--st~F~l~~~~~~~~~~~~~~~~~~ 257 (288)
T PRK00650 206 RLDLKEKKHWLES-LWAELPVHVGLTGSG--ATLFVRYPEILEKDPSYAAQIQRA 257 (288)
T ss_pred ChHHHHHHHHHHh-ccccCCCeEEEeCcc--cCEEEEeCCHHHHHHHHHHHhHhh
Confidence 7899998888876 543 24 8899999 99999997633 44444 555544
No 49
>PLN02407 diphosphomevalonate decarboxylase
Probab=92.79 E-value=0.92 Score=38.08 Aligned_cols=87 Identities=18% Similarity=0.107 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--------ChH---HHHHHHHHhhCCCC-eeEEEcCCCCcceee
Q 031942 35 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--------SEP---LIQLNEILQRAPGV-FGARFSGAGFRGCCL 102 (150)
Q Consensus 35 ~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--------~p~---~d~l~~~a~~~~Ga-~GakisGaG~GG~vi 102 (150)
..+..++.+|++++|++.||++.-.+-..||..+-- .|+ +-.++...++..|. -.+--.=|| +.+.
T Consensus 234 ~~~~~~~~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~DAG--PNv~ 311 (343)
T PLN02407 234 PKRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAG--PNAV 311 (343)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEecCC--CCEE
Confidence 345678889999999999999987776677732211 333 24455555542354 345666788 9999
Q ss_pred eeeccccHHH-HHHHHHHHHHh
Q 031942 103 ALVDADRAEE-AASYVRSEYFE 123 (150)
Q Consensus 103 al~~~~~~~~-~~~~l~~~y~~ 123 (150)
.|+++++.++ |++.+.+.|..
T Consensus 312 vl~~~~~~~~~v~~~~~~~~~~ 333 (343)
T PLN02407 312 LIALNRKVAAQLLQRLLYYFPP 333 (343)
T ss_pred EEEChhhhHHHHHHHHHHhcCC
Confidence 9999888887 88777766543
No 50
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=92.23 E-value=1.6 Score=38.89 Aligned_cols=86 Identities=16% Similarity=0.228 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHHhHhhc-CC-ChHHHHHHHHHhhCCCCeeE--EEcCCC
Q 031942 25 AKRAEHYFTENRRV----AKGLEAWKSGNSQDFGKLISASGLSSIYNY-EC-SEPLIQLNEILQRAPGVFGA--RFSGAG 96 (150)
Q Consensus 25 ~~r~~~~v~e~~r~----~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~-~v-~p~~d~l~~~a~~~~Ga~Ga--kisGaG 96 (150)
|.|+....++.+.. .+.++.+.+|.++.+|+++...|.....-- ++ .+...+|.+.... -..|- -..|+|
T Consensus 820 far~~a~~Q~ah~l~~~tdecAegf~kGsl~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLap--h~hgesgw~AGAG 897 (948)
T KOG4644|consen 820 FARCKATKQKAHKLAEATDECAEGFEKGSLELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAP--HKHGESGWAAGAG 897 (948)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhcc--ccccccchhccCC
Confidence 45777777766654 356677889999999999988876443211 23 3445666665542 22333 478999
Q ss_pred CcceeeeeeccccHHH
Q 031942 97 FRGCCLALVDADRAEE 112 (150)
Q Consensus 97 ~GG~vial~~~~~~~~ 112 (150)
+||.+.-+.++..-.+
T Consensus 898 GGGFiYLl~kEpqqke 913 (948)
T KOG4644|consen 898 GGGFIYLLIKEPQQKE 913 (948)
T ss_pred CCcEEEEEecCCCCHH
Confidence 9999999988766444
No 51
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.17 E-value=0.56 Score=38.11 Aligned_cols=77 Identities=21% Similarity=0.184 Sum_probs=49.8
Q ss_pred HcCCHHHHHHHHHHHHHHhHhhcCCChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhC
Q 031942 46 KSGNSQDFGKLISASGLSSIYNYECSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQ 125 (150)
Q Consensus 46 ~~~d~~~~g~lm~~s~~~lr~~~~v~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~ 125 (150)
.+|+| .+.|.-+....-.-++..+ ++...+++ .|+.++-+||-| ++.++|+++. +++.+.|++
T Consensus 197 ~~G~~---~~Am~lNG~~y~~aLG~~~---e~~~~ale-~GA~~aglSGtG--Pa~~Al~~~~--~~v~ea~~~------ 259 (278)
T COG1685 197 LKGEY---FKAMVLNGILYCSALGYDL---EPALKALE-AGAAAAGLSGTG--PAYFALTEDP--EEVAEAWSK------ 259 (278)
T ss_pred hcccH---HHHHHHhHHHHHHHhCCCh---HHHHHHHh-cccceeccCCCC--CceEEEecCc--HHHHHHHHh------
Confidence 45777 4555544432222222221 35667777 899999999998 9999999766 666666664
Q ss_pred hhhhhhcCCCceEEEeecC-CCee
Q 031942 126 PELASQLNADSAVLICKPG-DCAR 148 (150)
Q Consensus 126 ~~~~~~~~~~~~~~~~~p~-~Ga~ 148 (150)
+ -.|+++++. .+++
T Consensus 260 ------~---G~V~~t~~~~~~~~ 274 (278)
T COG1685 260 ------I---GDVIETRNVGERAR 274 (278)
T ss_pred ------C---CeEEEEecCCCCce
Confidence 2 367888765 5554
No 52
>PRK05905 hypothetical protein; Provisional
Probab=91.07 E-value=0.19 Score=40.40 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeee
Q 031942 71 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 105 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~ 105 (150)
+|++.++.+...+ .|+ .++|||+| +|++++-
T Consensus 223 ~P~i~~~~~~l~~-~g~-~a~MSGSG--stvF~l~ 253 (258)
T PRK05905 223 YPNLLYKYNELLN-DGF-YTILSGAG--SSFIVIK 253 (258)
T ss_pred ChHHHHHHHHHHh-CCC-CEEEeCcc--hhheEEe
Confidence 8999999888887 686 89999999 9999875
No 53
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=90.42 E-value=7.2 Score=32.64 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--------ChHHHHH---HHHHhhCCCCeeEEEcCCCCcceeeeeecc
Q 031942 39 AKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--------SEPLIQL---NEILQRAPGVFGARFSGAGFRGCCLALVDA 107 (150)
Q Consensus 39 ~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--------~p~~d~l---~~~a~~~~Ga~GakisGaG~GG~vial~~~ 107 (150)
.++..+++++|++.|+++...+-..|+.-+.- .++--++ +...++. |-..+-.+=+| +.+..++.+
T Consensus 218 ~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~-g~~~~fT~DaG--PnV~v~~~~ 294 (329)
T COG3407 218 EEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKE-GNAVYFTMDAG--PNVKVITLE 294 (329)
T ss_pred HHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhc-CCceEEEEcCC--CceEEEEec
Confidence 56788899999999999887776677633222 3333333 3444442 32334444466 999999999
Q ss_pred ccHHHHHHHHHHHH
Q 031942 108 DRAEEAASYVRSEY 121 (150)
Q Consensus 108 ~~~~~~~~~l~~~y 121 (150)
++..++.+.+.+.+
T Consensus 295 ~~l~~~~~~~~~~~ 308 (329)
T COG3407 295 ENLIDLLEILKTLE 308 (329)
T ss_pred ccHHHHHHHHhhcc
Confidence 99999887776543
No 54
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=63.60 E-value=32 Score=21.19 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHH
Q 031942 73 PLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 119 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~ 119 (150)
.+..|.+.+.+ .|.--.|+|... +.++--++.++++++.+.+.+
T Consensus 25 ~l~~la~ia~~-yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 25 QLRALAEIAEK-YGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHH-HSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 46778899987 676667999887 888888999999999888775
No 55
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=59.42 E-value=4.6 Score=15.30 Aligned_cols=6 Identities=33% Similarity=0.894 Sum_probs=4.1
Q ss_pred cCCCCc
Q 031942 93 SGAGFR 98 (150)
Q Consensus 93 sGaG~G 98 (150)
.|+|||
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 467776
No 56
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.08 E-value=99 Score=25.32 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=46.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccc
Q 031942 40 KGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 108 (150)
Q Consensus 40 ~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~ 108 (150)
.+..|+..+|...+|+.=.-|-. ..+ -.. -|.+++|.+.+.+ .+++|--..=+| +|+.|.=+.
T Consensus 201 ~v~~A~~~~~~~~lG~AAT~SAv-~~Q-~~LPK~~~~~lL~l~e~-~~~~Gv~VAHSG---tmlGli~D~ 264 (293)
T COG4542 201 LVEKALKVGDPKLLGEAATLSAV-KNQ-DRLPKPGLNELLRLVEE-TCAIGVIVAHSG---TMLGLIYDR 264 (293)
T ss_pred HHHHHHccCCHHHHHHHHHHHHH-hhc-cccCchhHHHHHHHHHH-hcccceEEeccC---ceEEeeecc
Confidence 34578889999999998866552 222 233 6788999999988 788998887775 888887443
No 57
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=59.04 E-value=1.1e+02 Score=25.88 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHhHhh-cCCChH----------HHHHHHHHhhCCC-Cee
Q 031942 23 TLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKL-ISASGLSSIYN-YECSEP----------LIQLNEILQRAPG-VFG 89 (150)
Q Consensus 23 ~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~l-m~~s~~~lr~~-~~v~p~----------~d~l~~~a~~~~G-a~G 89 (150)
-+..|+.+++- .|..++.+++.+.||+.|.++ |.+|. .++.- ++..|+ +..++..-.+..| ..-
T Consensus 223 L~qhRi~~vVP--~Ri~~m~eaI~~rDF~~FA~lTm~DSN-qFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~v 299 (395)
T KOG2833|consen 223 LLQHRIESVVP--QRIQQMREAIRERDFESFAKLTMKDSN-QFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRV 299 (395)
T ss_pred HHHHHHHhhhH--HHHHHHHHHHHhcCHHHHHHHHHhcch-hhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCeeE
Confidence 34568888775 577889999999999999994 55554 44421 122232 2333333332233 345
Q ss_pred EEEcCCCCcceeeeeeccccHHHHHHHHHHHHHh
Q 031942 90 ARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 90 akisGaG~GG~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
|-..-||=..|++++ ++.+.++.+.+-+.|..
T Consensus 300 AYTFDAGPNAvl~~l--~e~~~~~l~~~~~~f~~ 331 (395)
T KOG2833|consen 300 AYTFDAGPNAVLIVL--EENVSQLLAAVLKVFPP 331 (395)
T ss_pred EEEecCCCceEEEEh--hhhHHHHHHHHHHhcCC
Confidence 666778855566554 56677777776665543
No 58
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=57.14 E-value=28 Score=21.75 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=22.7
Q ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031942 5 LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAW 45 (150)
Q Consensus 5 lr~~~~~~l~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL 45 (150)
|..++.++|.+++..|..+. .|+...+..-.....++++|
T Consensus 18 Ls~lSv~EL~~RIa~L~aEI-~R~~~~~~~K~a~r~AAeal 57 (59)
T PF06698_consen 18 LSLLSVEELEERIALLEAEI-ARLEAAIAKKSASRAAAEAL 57 (59)
T ss_pred chhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 66677777777776665544 45555554444444444443
No 59
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=51.14 E-value=14 Score=29.58 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeec
Q 031942 71 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 106 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~ 106 (150)
+|++.++.+ .++.|||+| .|++++-+
T Consensus 230 ~P~i~~~~~--------~~~~mSGSG--stvF~l~~ 255 (257)
T PRK04181 230 YPALKDYLG--------EDWFFSGSG--SSFFRVKR 255 (257)
T ss_pred CHHHHHHhc--------CCcEEeCcC--cceEEEee
Confidence 677766632 346799999 99999754
No 60
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=47.35 E-value=1.7e+02 Score=24.41 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=24.9
Q ss_pred HHHHHhhCCCCeeEEEcCCCCcceeeeeeccc
Q 031942 77 LNEILQRAPGVFGARFSGAGFRGCCLALVDAD 108 (150)
Q Consensus 77 l~~~a~~~~Ga~GakisGaG~GG~vial~~~~ 108 (150)
|-..... .|+++.=+-|+|+|-.++++.++.
T Consensus 277 Ld~i~~l-~gvl~~lipgaGggdaif~l~~~~ 307 (337)
T COG3890 277 LDSIFDL-LGVLCDLIPGAGGGDAIFLLYRPN 307 (337)
T ss_pred hhhHHhc-cCceEeecccCCCCceEEEEeccc
Confidence 4444444 899999999999999999998653
No 61
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=47.23 E-value=1.6e+02 Score=25.27 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=40.3
Q ss_pred HHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeee
Q 031942 75 IQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 75 d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 149 (150)
-.|.+.+..-.|++++-+-|||+=..+++|... +++.. ..+.+.++.. +..+.-+++. .|+++
T Consensus 386 T~lLD~~~sl~GVl~~gvPGAGGfDAif~it~~-dvd~~-~~~~~~w~~~----------~V~~ldV~~a~~Gv~~ 449 (459)
T KOG4519|consen 386 TQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLG-DVDSG-TKLTQAWSSH----------NVLALDVREAPHGVCL 449 (459)
T ss_pred hhHhhhhhcccceEEecccCCCCcceEEEEeec-chhHH-HHHHhhhccc----------CeeEEeeeeCCCccee
Confidence 447777777689999999999988889988754 33332 2333344331 2344445544 78764
No 62
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=39.00 E-value=73 Score=20.90 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHH--HHHHHc--CCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHH
Q 031942 19 ELEPTLAKRAEHYFTENRRVAKG--LEAWKS--GNSQDFGKLISASGLSSIYNYEC-SEPLIQLN 78 (150)
Q Consensus 19 ~l~~~~~~r~~~~v~e~~r~~~~--~~aL~~--~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~ 78 (150)
.||++.++|+........|+... ..++.. .+++.|.-..+.-...-+..|++ +...++++
T Consensus 11 Rlp~E~~eRL~~Ls~~tgrtkayyvrEaIE~~ieemED~ylA~~aler~k~G~~q~~Sa~~~~~~ 75 (80)
T COG4710 11 RLPLELKERLDNLSKNTGRTKAYYVREAIEAYIEEMEDFYLAVNALERLKDGDYQKASAKIDKIV 75 (80)
T ss_pred eCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 46677777776666666554431 133332 23444444443333333344555 55544443
No 63
>PF15573 Imm27: Immunity protein 27
Probab=38.25 E-value=58 Score=26.06 Aligned_cols=41 Identities=17% Similarity=0.077 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHH
Q 031942 22 PTLAKRAEHYFTENRRVAKGLEAWKSGNSQ---DFGKLISASGL 62 (150)
Q Consensus 22 ~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~---~~g~lm~~s~~ 62 (150)
+++...++.+..|.......++.++.||+. .+-++||+.++
T Consensus 17 ~~lK~~ll~~~tE~E~~lli~El~K~GDFsvK~LLiqLMN~TkD 60 (259)
T PF15573_consen 17 SELKENLLSVQTEKECLLLIIELLKKGDFSVKNLLIQLMNQTKD 60 (259)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhCCchhhHHHHHHHhcchh
Confidence 445667778888999999999999999986 78889998876
No 64
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=37.86 E-value=15 Score=14.88 Aligned_cols=8 Identities=25% Similarity=0.571 Sum_probs=4.3
Q ss_pred EEEcCCCC
Q 031942 90 ARFSGAGF 97 (150)
Q Consensus 90 akisGaG~ 97 (150)
..++|+|.
T Consensus 2 f~l~GgGV 9 (10)
T PF08250_consen 2 FSLGGGGV 9 (10)
T ss_pred cccccCcC
Confidence 34566664
No 65
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=37.61 E-value=84 Score=26.90 Aligned_cols=77 Identities=14% Similarity=0.011 Sum_probs=55.4
Q ss_pred HHHHHHHhccCCHHH------HHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHhHhhcCC--ChHHHHHHH
Q 031942 10 EEVYEAHKNELEPTL------AKRAEHYFTENRRVAKGLEAWKSGNSQ--DFGKLISASGLSSIYNYEC--SEPLIQLNE 79 (150)
Q Consensus 10 ~~~l~~~~~~l~~~~------~~r~~~~v~e~~r~~~~~~aL~~~d~~--~~g~lm~~s~~~lr~~~~v--~p~~d~l~~ 79 (150)
.+++.+.+....|+. ..|......+...=....++|+.|+.- ..+-++...|.-+-+..++ ..|.-.-++
T Consensus 27 veeVrr~I~~~~PDaVAVELd~~R~~sLl~~~~~~ldl~~vlk~Gk~~~~l~~~lLa~~Qrklg~~~Gv~PGsEmk~AIe 106 (388)
T COG1916 27 VEEVRRIILEEKPDAVAVELDEARLLSLLGGSREELDLAQVLKEGKAFFLLAGLLLAYFQRKLGKELGVKPGSEMKAAIE 106 (388)
T ss_pred HHHHHHHHHhcCCCeEEEEecHHHHHHHhcCCcccCCHHHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 355666666665553 467777777666545677889999977 7777888888888888888 556777778
Q ss_pred HHhhCCCC
Q 031942 80 ILQRAPGV 87 (150)
Q Consensus 80 ~a~~~~Ga 87 (150)
.|++ .|+
T Consensus 107 ~A~e-~ga 113 (388)
T COG1916 107 AARE-LGA 113 (388)
T ss_pred HHHH-cCC
Confidence 8876 554
No 66
>PHA01735 hypothetical protein
Probab=36.50 E-value=33 Score=22.29 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=35.0
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 031942 8 VEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDF 53 (150)
Q Consensus 8 ~~~~~l~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~ 53 (150)
.+.+.|.+.-..+..++..|+..--....-...+.+-|+++|...+
T Consensus 5 A~ee~fs~LH~~lt~El~~RiksgeATtaDL~AA~d~Lk~NdItgv 50 (76)
T PHA01735 5 ATEEQFDELHQLLTNELLSRIKSGEATTADLRAACDWLKSNDITGV 50 (76)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHCCCcee
Confidence 4567777777778888888888777777777788888888876543
No 67
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=35.52 E-value=1.1e+02 Score=22.40 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=29.2
Q ss_pred CCCHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 031942 7 NVEEEVYEAHK--NELEPTLAKRAEHYFTENRRVAKGLEA 44 (150)
Q Consensus 7 ~~~~~~l~~~~--~~l~~~~~~r~~~~v~e~~r~~~~~~a 44 (150)
+-|+++|+... ..++|++.+|.+.+..+..+-.+.+..
T Consensus 83 pGTLN~fL~~~~e~dl~Pevlk~fe~m~~~a~~~a~~a~~ 122 (134)
T PF08400_consen 83 PGTLNDFLTAPDEDDLRPEVLKRFEEMVAQAARSAEAAAE 122 (134)
T ss_pred CCcHHHHhhccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888654 588999999999999998886655543
No 68
>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]
Probab=34.94 E-value=73 Score=24.09 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=40.5
Q ss_pred HHHhHhhcCC-ChHHHHHHHHHhhC-CC-CeeEEEcCCC-Cc----ceeeeeecc--ccHHHHHHHHHHHHHh
Q 031942 61 GLSSIYNYEC-SEPLIQLNEILQRA-PG-VFGARFSGAG-FR----GCCLALVDA--DRAEEAASYVRSEYFE 123 (150)
Q Consensus 61 ~~~lr~~~~v-~p~~d~l~~~a~~~-~G-a~GakisGaG-~G----G~vial~~~--~~~~~~~~~l~~~y~~ 123 (150)
|--|+-..++ ...++.|.+.+.+. .+ .+--++.|.| |+ ..++-+-.. +...++.+.+.....+
T Consensus 39 HiTL~flGev~e~~~~~l~~~l~~i~~~~~f~i~l~g~g~F~~~~~~rvi~~~v~~~~~L~~L~~~l~~~~~~ 111 (180)
T COG1514 39 HITLKFLGEVDEDKADELIEALARIAAPEPFPITLDGAGSFPNPRRPRVIWVGVEETEELRALAEELERALAR 111 (180)
T ss_pred eEEEEccCCcCchHHHHHHHHHHHhhcCCceEEEEeeEcccCCCCCCcEEEEcCCCcHHHHHHHHHHHHHHHh
Confidence 5567766676 66677777766642 23 5677999999 77 455555544 3366677777655554
No 69
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=32.65 E-value=63 Score=19.38 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhHhhcCC-ChHHHHHHH
Q 031942 51 QDFGKLISASGLSSIYNYEC-SEPLIQLNE 79 (150)
Q Consensus 51 ~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~ 79 (150)
+.+-+-++.-|.-+|+-|.. -||++.++.
T Consensus 10 ~~id~ei~~~~~~lre~Y~~~FPEL~~lv~ 39 (53)
T PF08060_consen 10 DDIDKEINLLHMRLREWYSWHFPELESLVP 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHccchhHHHHcC
Confidence 44556666778889999999 999987654
No 70
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=29.60 E-value=54 Score=27.56 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=13.3
Q ss_pred EEcCCCCcceee--eeeccccH
Q 031942 91 RFSGAGFRGCCL--ALVDADRA 110 (150)
Q Consensus 91 kisGaG~GG~vi--al~~~~~~ 110 (150)
-++|+|.||.+| ++|++..+
T Consensus 39 e~~~gG~gg~vi~AVmVDpgav 60 (387)
T COG3064 39 EASGGGGGGSVIDAVMVDPGAV 60 (387)
T ss_pred cccCCCCCcceeeeeEeCcHHH
Confidence 456778888888 56665443
No 71
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=28.70 E-value=1.4e+02 Score=20.91 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=34.7
Q ss_pred HHHHHHHHhhCCCCeeEEEcCCC-----CcceeeeeeccccHHHHHHHHHHHHHhh
Q 031942 74 LIQLNEILQRAPGVFGARFSGAG-----FRGCCLALVDADRAEEAASYVRSEYFEL 124 (150)
Q Consensus 74 ~d~l~~~a~~~~Ga~GakisGaG-----~GG~vial~~~~~~~~~~~~l~~~y~~~ 124 (150)
.+.+.+...+ +|....|++-.| +.=+++.=+++++++++++.|++.++++
T Consensus 13 a~~l~~~L~~-~g~~~TkLsstGGFLr~GNtTlliGvede~v~~vl~iIk~~c~~R 67 (109)
T PF06153_consen 13 ADDLSDALNE-NGFRVTKLSSTGGFLREGNTTLLIGVEDEKVDEVLEIIKENCKKR 67 (109)
T ss_dssp HHHHHHHHHH-TT--EEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHH--E
T ss_pred HHHHHHHHHH-CCceEEEEecccceeccCCEEEEEEecHHHHHHHHHHHHHhhcCc
Confidence 4667777887 898888998877 1224455567778999999999988865
No 72
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=28.65 E-value=2.9e+02 Score=22.54 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=23.4
Q ss_pred eeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEee
Q 031942 88 FGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICK 142 (150)
Q Consensus 88 ~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~ 142 (150)
+|+...-.| .+|++.+....+.. .|.++.++ |.+..+|++.
T Consensus 108 ~a~~~i~~g--~~ILT~~~S~tv~~---~l~~a~~~---------~~~f~V~v~E 148 (301)
T TIGR00511 108 IGAKRIRDG--DVVMTHCNSEAALS---VIKTAFEQ---------GKDIEVIATE 148 (301)
T ss_pred HHHHHcCCC--CEEEEECCcHHHHH---HHHHHHHc---------CCcEEEEEec
Confidence 444444455 78999886644444 34444333 5566777755
No 73
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=28.64 E-value=1.5e+02 Score=19.60 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=26.2
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 031942 22 PTLAKRAE----HYFTENRRVAKGLEAWKSGNSQDFGKL 56 (150)
Q Consensus 22 ~~~~~r~~----~~v~e~~r~~~~~~aL~~~d~~~~g~l 56 (150)
+..+.|.+ .++.+...+.+-.++|.++||..+..+
T Consensus 17 p~~rerF~~DPea~~~~~gLt~eE~~aL~~~D~~~L~~l 55 (81)
T cd07922 17 PGLIERFQDDPSAVFEEYGLTPAERAALREGTFGALTSI 55 (81)
T ss_pred HHHHHHHHHCHHHHHHHcCCCHHHHHHHHccCHHHHHHc
Confidence 34444443 566888888899999999999887764
No 74
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=27.35 E-value=3.4e+02 Score=22.01 Aligned_cols=46 Identities=17% Similarity=0.077 Sum_probs=28.3
Q ss_pred HHHHHhhCCCCeeE--EEcCCCCcceeeeeeccccHHHHHHHHHHHHHh
Q 031942 77 LNEILQRAPGVFGA--RFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 77 l~~~a~~~~Ga~Ga--kisGaG~GG~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
+++...+..| +|- .+.|+.+|=-.+-...++.+.++.+.+.+.+.+
T Consensus 44 i~~~~~~~~~-~g~~~t~~ga~ggv~~~p~~~~~~~~~~~~~l~~~l~~ 91 (268)
T TIGR01743 44 IIKETFEKFG-IGKLLTVPGAAGGVKYIPKMSQAEAEEFVEELCQSLSE 91 (268)
T ss_pred HHHHHHHhcC-CceEEEeCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 4444444366 565 566776554444445555678888888877765
No 75
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=26.87 E-value=11 Score=29.72 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=9.7
Q ss_pred EEcCCCCcceeeee
Q 031942 91 RFSGAGFRGCCLAL 104 (150)
Q Consensus 91 kisGaG~GG~vial 104 (150)
=|.|+|.|||++|.
T Consensus 4 iIVGsG~~G~v~A~ 17 (296)
T PF00732_consen 4 IIVGSGAGGSVVAS 17 (296)
T ss_dssp EEES-SHHHHHHHH
T ss_pred EEECcCHHHHHHHH
Confidence 36788888888663
No 76
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=26.82 E-value=2.4e+02 Score=20.17 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeec
Q 031942 73 PLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKP 143 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p 143 (150)
...+|.+...+ .|.-..+.-=.- |-++.= +....+.+...|++...+. ||++..+++..+
T Consensus 20 ~MaeLr~~l~~-~Gf~~V~Tyi~S--GNvvf~-~~~~~~~l~~~ie~~l~~~-------fG~~v~v~vrs~ 79 (137)
T PF08002_consen 20 KMAELREALED-LGFTNVRTYIQS--GNVVFE-SDRDPAELAAKIEKALEER-------FGFDVPVIVRSA 79 (137)
T ss_dssp -HHHHHHHHHH-CT-EEEEEETTT--TEEEEE-ESS-HHHHHHHHHHHHHHH--------TT---EEEEEH
T ss_pred cHHHHHHHHHH-cCCCCceEEEee--CCEEEe-cCCChHHHHHHHHHHHHHh-------cCCCeEEEEeeH
Confidence 35778888877 787666544444 566655 6677899999999888775 799888887653
No 77
>PF07022 Phage_CI_repr: Bacteriophage CI repressor helix-turn-helix domain; InterPro: IPR010744 This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2FJR_B.
Probab=26.36 E-value=46 Score=20.64 Aligned_cols=48 Identities=15% Similarity=0.030 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhH-hhc-CC-ChHHHHHHHHHhhCCCC
Q 031942 38 VAKGLEAWKSGNSQDFGKLISASGLSSI-YNY-EC-SEPLIQLNEILQRAPGV 87 (150)
Q Consensus 38 ~~~~~~aL~~~d~~~~g~lm~~s~~~lr-~~~-~v-~p~~d~l~~~a~~~~Ga 87 (150)
+....+++...+-..|++.+.-++..+. .-. +- .| .+.+++.+.. .|+
T Consensus 3 i~rl~~~~g~~~~~~lA~~lgis~st~s~~~~~r~~~P-~~~l~~ia~~-~gv 53 (66)
T PF07022_consen 3 IERLKEALGVKSDKELAERLGISKSTLSNNWKKRGSIP-AEWLIKIALE-TGV 53 (66)
T ss_dssp HHHHHHHHT-SSCHHHHCCTT--HHHHH-HHHHSSS---HHHHHHHHHH-H--
T ss_pred HHHHHHHhCCCCHHHHHHHhCcCHHHhhHHHHhCCCCC-HHHHHHHHHH-HCc
Confidence 3455566666667788888877777666 222 22 55 7999999987 564
No 78
>PF03369 Herpes_UL3: Herpesvirus UL3 protein; InterPro: IPR005035 Herpes simplex viruses are large DNA viruses, the genome of which encode approximately 80 genes. The UL3 gene of Human herpesvirus 2 (HHV-2) is predicted to encode a 233 amino acid protein with a molecular mass of 26 kDa. Homologues of the UL3 protein are encoded only among alphaherpesviruses. The function of the UL3 protein of Herpes simplex viruses remains unknown but it is known to localize to the nucleus and is a phosphoprotein [].
Probab=26.34 E-value=92 Score=22.47 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=26.7
Q ss_pred eeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCC
Q 031942 101 CLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDC 146 (150)
Q Consensus 101 vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~G 146 (150)
|+.||+..++..+.+.|...-... +|+=|.+++++|
T Consensus 71 MFvLC~r~hA~~vR~qL~~vI~sR----------KPRkYytrssDG 106 (134)
T PF03369_consen 71 MFVLCQRAHAKQVRDQLYSVIQSR----------KPRKYYTRSSDG 106 (134)
T ss_pred eeeeehhhhHHHHHHHHHHHHHhc----------CCcccccccCCC
Confidence 889999999999988887765543 455566666655
No 79
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=26.26 E-value=2.4e+02 Score=19.98 Aligned_cols=39 Identities=8% Similarity=0.112 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 031942 21 EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISA 59 (150)
Q Consensus 21 ~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~ 59 (150)
++....+...++.....-...+..|....++.|..+|..
T Consensus 57 ~~~~q~~~~~lL~~IL~nda~Ir~Llq~rl~eL~~li~~ 95 (121)
T PRK10548 57 STVMQEQLRPMLRQILDNEAELKQLLQQRMDELSSLIGQ 95 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333344444444445555555543
No 80
>PF03118 RNA_pol_A_CTD: Bacterial RNA polymerase, alpha chain C terminal domain; InterPro: IPR011260 The core of the bacterial RNA polymerase (RNAP) consists of four subunits, two alpha, a beta and a beta', which are conserved from bacteria to mammals. The alpha subunit (RpoA) initiates RNAP assembly by dimerising to form a platform on which the beta subunits can interact. The alpha subunit consists of a N-terminal domain (NTD) and a C-terminal domain (CTD), connected by a short linker. The NTD is essential for RNAP assembly, while the CTD is necessary for transcription regulation, interacting with transcription factors and promoter upstream elements. In Escherichia coli, the catabolite activator protein (CAP or CRP) was shown to exert its effect through its interactions with the CTD, where CAP binding to CTD promotes RNAP binding to promoter DNA, thereby stimulating transcription initiation at class I CAP-dependent promoters. At class II CAP-dependent promoters, the interaction of CAP with CTD is one of multiple interactions involved in activation []. The CTD has a compact structure of four helices and two long arms enclosing its hydrophobic core, making its folding topology distinct from most other binding proteins. The upstream promoter element-binding site is formed from helices 1 and 4 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3N97_B 1XS9_D 3K4G_A 3N4M_B 1COO_A 1LB2_E 3IYD_A 1Z3E_B 3GFK_B 3IHQ_B ....
Probab=25.84 E-value=92 Score=19.52 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=28.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHH
Q 031942 40 KGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEIL 81 (150)
Q Consensus 40 ~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a 81 (150)
.+..+|...++..++.++..+...|..--++ -..++++.+..
T Consensus 22 Ra~n~L~~~~I~tv~dL~~~s~~~L~~i~n~G~ksl~EI~~~L 64 (66)
T PF03118_consen 22 RAYNCLKRAGIHTVGDLVKYSEEDLLKIKNFGKKSLEEIKEKL 64 (66)
T ss_dssp HHHHHHHCTT--BHHHHHCS-HHHHHTSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcCHHHHHhCCHHHHHhCCCCCHhHHHHHHHHH
Confidence 5678889999999999998888777754444 44566665543
No 81
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=25.71 E-value=2.7e+02 Score=22.13 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=5.6
Q ss_pred HHhccCCHHHH
Q 031942 15 AHKNELEPTLA 25 (150)
Q Consensus 15 ~~~~~l~~~~~ 25 (150)
..++.||+..+
T Consensus 104 ~~l~~L~~~~R 114 (281)
T TIGR02957 104 LLLERLSPLER 114 (281)
T ss_pred HHHhhCCHHHH
Confidence 34455665543
No 82
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=25.41 E-value=33 Score=28.63 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=33.6
Q ss_pred CHHHHHHHHHH-HHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeee
Q 031942 49 NSQDFGKLISA-SGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLAL 104 (150)
Q Consensus 49 d~~~~g~lm~~-s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial 104 (150)
|++.|-+.+++ .+..+....+- +--+++.....+- -|+ +..||.|+-+.+-++
T Consensus 205 DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrt-v~V--Ss~tG~G~ddf~~av 259 (366)
T KOG1532|consen 205 DFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRT-VGV--SSVTGEGFDDFFTAV 259 (366)
T ss_pred HHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCce-EEE--ecccCCcHHHHHHHH
Confidence 57777777774 22233333333 4456777777664 566 889999987766664
No 83
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=25.31 E-value=3.5e+02 Score=21.50 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=8.0
Q ss_pred HHHHhccCCHHHH
Q 031942 13 YEAHKNELEPTLA 25 (150)
Q Consensus 13 l~~~~~~l~~~~~ 25 (150)
+...++.||+..+
T Consensus 109 l~~~l~~L~~~~R 121 (293)
T PRK09636 109 LMLALERLSPLER 121 (293)
T ss_pred HHHHHHhCCHHHH
Confidence 4455667777654
No 84
>PRK00068 hypothetical protein; Validated
Probab=24.07 E-value=2.2e+02 Score=27.50 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=24.4
Q ss_pred HHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHhH
Q 031942 32 FTENRR-VAKGLEAWKSGNSQDFGKLISASGLSSI 65 (150)
Q Consensus 32 v~e~~r-~~~~~~aL~~~d~~~~g~lm~~s~~~lr 65 (150)
+.+... ..++.+|+++|||..+|+.+.+=.+.|.
T Consensus 930 l~~a~~a~~~a~~Alk~GDw~~yG~a~~~L~~al~ 964 (970)
T PRK00068 930 LKEAQDAYNKAIEAQKSGDFAEYGEALKELDDALN 964 (970)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 333333 3467789999999999999976655554
No 85
>PRK05325 hypothetical protein; Provisional
Probab=23.71 E-value=68 Score=27.66 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=23.6
Q ss_pred ceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCC
Q 031942 99 GCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDC 146 (150)
Q Consensus 99 G~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~G 146 (150)
||++.- ..+...+-|++.|.. -.|.+|..+.++|
T Consensus 288 GT~vSS----A~~l~~eIi~~rYpp----------~~wNIY~f~aSDG 321 (401)
T PRK05325 288 GTIVSS----AYKLALEIIEERYPP----------AEWNIYAFQASDG 321 (401)
T ss_pred CeEehH----HHHHHHHHHHhhCCH----------hHCeeEEEEcccC
Confidence 777653 245555556667765 3689999999987
No 86
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=23.69 E-value=1.5e+02 Score=25.04 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=24.1
Q ss_pred HHHHHhhCCCC-eeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhh
Q 031942 77 LNEILQRAPGV-FGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFEL 124 (150)
Q Consensus 77 l~~~a~~~~Ga-~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~ 124 (150)
+.+.+.+ .|. +-.==.|||||+. ..+.+++.+.+.+.+.+.
T Consensus 193 ~~~~~~~-~g~~l~~ldiGGGf~~~------~~~~~~~~~~i~~~l~~~ 234 (394)
T cd06831 193 VFDMAEE-FGFKMNMLDIGGGFTGS------EIQLEEVNHVIRPLLDVY 234 (394)
T ss_pred HHHHHHH-CCCCCCEEEeCCCcCCC------CCCHHHHHHHHHHHHHHh
Confidence 4455554 343 2233469999862 235677777777766654
No 87
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=22.78 E-value=3.3e+02 Score=25.69 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=25.2
Q ss_pred CCCeeEEEcCCCCcceeeeeeccccHHHHHHHH
Q 031942 85 PGVFGARFSGAGFRGCCLALVDADRAEEAASYV 117 (150)
Q Consensus 85 ~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l 117 (150)
.|.|...++-+|.=|.++||-+.-+...++-.+
T Consensus 775 L~eya~NL~eSGVHGaLlaLdetFd~s~lAl~L 807 (916)
T KOG0249|consen 775 LGEYANNLKESGVHGALLALDETFDYSTLALAL 807 (916)
T ss_pred HHHHhhhhhhhcccceeeeecccCChHHHHHHH
Confidence 355888999999999999998776666655433
No 88
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=22.72 E-value=81 Score=21.57 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=15.2
Q ss_pred HHHhccCCHHHHHHHHHHHH
Q 031942 14 EAHKNELEPTLAKRAEHYFT 33 (150)
Q Consensus 14 ~~~~~~l~~~~~~r~~~~v~ 33 (150)
...++.|+|++|.|+...+.
T Consensus 2 ~~li~~mtPevY~rL~~AVE 21 (93)
T PF07023_consen 2 EQLIDSMTPEVYERLKQAVE 21 (93)
T ss_pred hHHHHhCCHHHHHHHHHHHH
Confidence 45567889999988877664
No 89
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=22.69 E-value=3.8e+02 Score=20.92 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=39.2
Q ss_pred hhcCC-ChHH------HHHHHHHhhCCCCeeEEEcCCC------CcceeeeeeccccHHHHHHHHHHHHHhhCh
Q 031942 66 YNYEC-SEPL------IQLNEILQRAPGVFGARFSGAG------FRGCCLALVDADRAEEAASYVRSEYFELQP 126 (150)
Q Consensus 66 ~~~~v-~p~~------d~l~~~a~~~~Ga~GakisGaG------~GG~vial~~~~~~~~~~~~l~~~y~~~~~ 126 (150)
..|++ .|+. ++..+.+.+...-+--|+...+ .||-.+.|-.++.+.+-.+.|.+...+++|
T Consensus 20 ~~yGI~~~~~~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~~~~~p 93 (222)
T PF13549_consen 20 AAYGIPVPPTRLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERVAAHHP 93 (222)
T ss_dssp HTTT------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHHHHH-T
T ss_pred HHcCcCCCCeeEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHHHHhCC
Confidence 45888 6643 7888888873233778998887 689999998777777777788888777655
No 90
>COG3143 CheZ Chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=22.55 E-value=3.6e+02 Score=21.04 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=36.7
Q ss_pred CCcCCCCHHHHHHHhccCCHHHHHHHHHHHHHHHHHH-HHHHHHHc-----CCHHHHHHHHHHHHHHhH
Q 031942 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVA-KGLEAWKS-----GNSQDFGKLISASGLSSI 65 (150)
Q Consensus 3 ~~lr~~~~~~l~~~~~~l~~~~~~r~~~~v~e~~r~~-~~~~aL~~-----~d~~~~g~lm~~s~~~lr 65 (150)
.+||++..++=.+.....-|+.+.|+.|++.-...+. .+.++... ..+..=.+.+.+.|+...
T Consensus 33 eslrelglD~~~~~aa~aIpDArdRL~YVv~mTeqAA~r~lnaVea~~P~qd~L~~~a~~l~~rWq~wm 101 (217)
T COG3143 33 ESLRELGLDQAIAEAAEAIPDARDRLNYVVQMTEQAAERALNAVEASQPHQDQLEKSAKALTQRWQDWM 101 (217)
T ss_pred HHHHHhCcchhhHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666788899999986554432 23333332 224444455666666444
No 91
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=22.50 E-value=4.4e+02 Score=21.63 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHHHHHHc--CCHHHHHHHHHHHHHHhHhhcCC-C---hHHHHHH
Q 031942 6 CNVEEEVYEAHKNELEPTLAKRAEHYFTEN-RRVAKGLEAWKS--GNSQDFGKLISASGLSSIYNYEC-S---EPLIQLN 78 (150)
Q Consensus 6 r~~~~~~l~~~~~~l~~~~~~r~~~~v~e~-~r~~~~~~aL~~--~d~~~~g~lm~~s~~~lr~~~~v-~---p~~d~l~ 78 (150)
..++.+++.+.++.+....+.....-+... ..+..++..+.. ...-.++.+........ ..+++ . .++-.+.
T Consensus 268 ~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~-~~~~~~~~~~~~~~~~l 346 (394)
T PRK00411 268 RKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELC-EELGYEPRTHTRFYEYI 346 (394)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH-HHcCCCcCcHHHHHHHH
Confidence 357777887777666444433322223222 233334333322 13346777776655433 33455 2 2444455
Q ss_pred HHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHH
Q 031942 79 EILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 119 (150)
Q Consensus 79 ~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~ 119 (150)
..... .|.+..+.+|.|-.|-.--+.-.-..+.+.+++.+
T Consensus 347 ~~L~~-~glI~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK00411 347 NKLDM-LGIINTRYSGKGGRGRTRLISLSYDPEDVLERLLE 386 (394)
T ss_pred HHHHh-cCCeEEEEecCCCCCCeEEEEecCCHHHHHHHHHh
Confidence 55555 79988888877754444333323445566666654
No 92
>PRK12539 RNA polymerase sigma factor; Provisional
Probab=21.83 E-value=2.5e+02 Score=20.47 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhH
Q 031942 38 VAKGLEAWKSGNSQDFGKLISASGLSSI 65 (150)
Q Consensus 38 ~~~~~~aL~~~d~~~~g~lm~~s~~~lr 65 (150)
...++..+..||-++|..++...+..++
T Consensus 8 ~~~l~~~~~~gd~~af~~l~~~~~~~l~ 35 (184)
T PRK12539 8 LKALMLASLDGDAAAHRALLERLSGHLR 35 (184)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4455666777888888888877776555
No 93
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=21.81 E-value=2e+02 Score=22.23 Aligned_cols=64 Identities=20% Similarity=0.143 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEc---CCCCcceeeeeeccccHHHHHHHHHH
Q 031942 51 QDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFS---GAGFRGCCLALVDADRAEEAASYVRS 119 (150)
Q Consensus 51 ~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~Gakis---GaG~GG~vial~~~~~~~~~~~~l~~ 119 (150)
..+.++|.... .|. .+++ ...+..+...|.. .|+.=+-+- ++. |.+..+.+..+++.+-.++.+
T Consensus 22 ~slk~L~k~g~-~l~-~i~i~~~~lk~F~k~AkK-yGV~yav~kdk~~~~--~~~~V~FkA~Da~~i~~af~~ 89 (204)
T PF12687_consen 22 QSLKKLLKQGK-GLK-NIEITDEDLKEFKKEAKK-YGVDYAVKKDKSTGP--GKYDVFFKAKDADVINRAFKE 89 (204)
T ss_pred eeHHHHHhcCC-Cce-EEecCHhhHHHHHHHHHH-cCCceEEeeccCCCC--CcEEEEEEcCcHHHHHHHHHH
Confidence 45667776533 565 4788 7788999999998 899555443 333 688888888899887777765
No 94
>PRK07758 hypothetical protein; Provisional
Probab=21.40 E-value=1.3e+02 Score=20.65 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=33.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhHhhcCCCh-HHHHHHHHHhhCCC
Q 031942 40 KGLEAWKSGNSQDFGKLISASGLSSIYNYECSE-PLIQLNEILQRAPG 86 (150)
Q Consensus 40 ~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v~p-~~d~l~~~a~~~~G 86 (150)
.+..+|....+..++.++..+...|...-++.| .+++|.+...+ .|
T Consensus 45 RA~N~Lk~AGI~TL~dLv~~te~ELl~iknlGkKSL~EIkekL~E-~G 91 (95)
T PRK07758 45 PARRALEHHGIHTVEELSKYSEKEILKLHGMGPASLPKLRKALEE-SG 91 (95)
T ss_pred HHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH-cC
Confidence 566788889999999999888877765334444 56777776665 55
No 95
>PRK09213 pur operon repressor; Provisional
Probab=21.29 E-value=4.3e+02 Score=21.45 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=26.5
Q ss_pred HHHHHhhCCCCeeE--EEcCCCCcceeeeeeccccHHHHHHHHHHHHHh
Q 031942 77 LNEILQRAPGVFGA--RFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 77 l~~~a~~~~Ga~Ga--kisGaG~GG~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
+++...+..| +|- .+.|+.+|=-.+-....+++.++.+.|.+...+
T Consensus 46 i~~~~~~~~~-~g~~~t~~ga~ggv~~~p~~~~~~a~~~~~~L~~~L~~ 93 (271)
T PRK09213 46 IIKETFEKQG-IGTLETVPGAAGGVKYIPSISEEEAREFVEELCERLSE 93 (271)
T ss_pred HHHHHHHhcC-CceEEEeCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHh
Confidence 4444444366 565 566766554444444445677777777766544
No 96
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=21.17 E-value=3.8e+02 Score=21.86 Aligned_cols=37 Identities=16% Similarity=0.020 Sum_probs=22.2
Q ss_pred CCeeEEEc-CCCCcceeeeeeccccHHHHHHHHHHHHHhh
Q 031942 86 GVFGARFS-GAGFRGCCLALVDADRAEEAASYVRSEYFEL 124 (150)
Q Consensus 86 Ga~Gakis-GaG~GG~vial~~~~~~~~~~~~l~~~y~~~ 124 (150)
|.--..++ |||++.-.. ..+...+++.+.+.+...+.
T Consensus 199 g~~~~~id~GGG~~~~y~--~~~~~~~~~~~~i~~~~~~~ 236 (368)
T cd06810 199 GFPLEMLDLGGGLGIPYD--EQPLDFEEYAALINPLLKKY 236 (368)
T ss_pred CCCCCEEEeCCCcccccC--CCCCCHHHHHHHHHHHHHHH
Confidence 43233555 667765443 23346788888888777664
No 97
>PRK05377 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.99 E-value=98 Score=25.56 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHH
Q 031942 71 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYV 117 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l 117 (150)
+|.+|.+.+.+.+ .|+.|+|+ -|||-+..+.....++..+
T Consensus 121 ~~GLD~Ll~R~~~-y~~~GaKw------RsViki~~~~~I~~na~ql 160 (296)
T PRK05377 121 IPNLDDLLDRAVE-KGIFGTKM------RSVIKEANEQGIAAVVAQQ 160 (296)
T ss_pred CCCHHHHHHHHHH-hCCCccce------eeeecCCCHHHHHHHHHHH
Confidence 7899999999998 89999988 6888886433344444433
Done!