Query 031942
Match_columns 150
No_of_seqs 108 out of 1033
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:48:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 3.5E-29 1.2E-33 215.5 16.2 126 23-150 381-518 (520)
2 1pie_A Galactokinase; galactos 99.9 1.5E-25 5.3E-30 187.4 18.2 140 3-150 274-416 (419)
3 2a2c_A N-acetylgalactosamine k 99.9 1.3E-25 4.3E-30 191.3 14.4 124 23-150 347-475 (478)
4 2cz9_A Probable galactokinase; 99.9 7.9E-25 2.7E-29 177.8 17.3 124 18-149 226-350 (350)
5 1wuu_A Galactokinase; galactos 99.9 2.1E-24 7.3E-29 179.4 18.2 137 3-150 260-397 (399)
6 1kvk_A MK, mevalonate kinase; 99.8 3.6E-19 1.2E-23 147.6 11.8 113 24-149 264-379 (395)
7 3k85_A D-glycero-D-manno-hepto 99.8 1.5E-19 5.2E-24 148.8 6.1 107 26-149 229-338 (357)
8 3gon_A Phosphomevalonate kinas 99.8 3.7E-18 1.3E-22 137.0 13.8 88 31-123 229-318 (335)
9 4hac_A Mevalonate kinase; GHMP 99.7 1.5E-16 5.2E-21 129.0 15.6 96 38-149 223-320 (321)
10 2hfs_A Mevalonate kinase, puta 99.7 2E-15 6.7E-20 121.8 14.2 102 37-149 229-332 (332)
11 2x7i_A Mevalonate kinase; tran 99.6 2.8E-15 9.7E-20 119.7 11.9 83 36-120 212-296 (308)
12 3k17_A LIN0012 protein; protei 99.6 3.8E-15 1.3E-19 122.9 13.0 91 27-119 243-341 (365)
13 2oi2_A Mevalonate kinase; enzy 99.6 1.7E-14 5.8E-19 114.0 13.1 82 38-121 200-283 (292)
14 2pg9_A Phosphomevalonate kinas 99.6 2.7E-14 9.3E-19 116.5 14.4 100 31-145 230-333 (337)
15 1kkh_A Mevalonate kinase; mixe 99.5 8.8E-13 3E-17 105.6 15.1 75 41-118 229-304 (317)
16 1h72_C HK, homoserine kinase; 99.4 2.8E-13 9.7E-18 107.4 8.8 101 29-150 193-296 (296)
17 3hul_A HSK, HK, homoserine kin 99.4 2.2E-12 7.5E-17 103.7 10.8 102 31-149 184-288 (298)
18 3qt5_A Mevalonate diphosphate 99.4 4.9E-12 1.7E-16 103.1 11.6 106 30-150 213-331 (332)
19 2gs8_A Mevalonate pyrophosphat 99.3 1.1E-10 3.8E-15 93.7 15.9 98 34-149 209-317 (317)
20 3pyf_A 4-diphosphocytidyl-2-C- 99.1 2.2E-10 7.5E-15 92.3 7.4 95 37-150 202-300 (306)
21 2hke_A Diphosphomevalonate dec 98.9 2E-08 6.9E-13 82.9 12.5 88 34-123 221-320 (380)
22 1fi4_A Mevalonate 5-diphosphat 98.7 1.3E-07 4.4E-12 79.1 12.4 86 35-122 251-348 (416)
23 3lto_A Mevalonate diphosphate 98.7 1.3E-07 4.6E-12 76.9 10.9 88 34-123 212-310 (323)
24 3f0n_A Mevalonate pyrophosphat 98.7 4E-07 1.4E-11 76.3 13.3 93 29-123 240-346 (414)
25 1uek_A 4-(cytidine 5'-diphosph 98.3 1.1E-06 3.8E-11 68.9 7.1 58 71-146 210-268 (275)
26 2v8p_A 4-diphosphocytidyl-2-C- 97.9 1.1E-06 3.8E-11 68.9 -0.8 68 38-114 189-259 (271)
27 2ww4_A 4-diphosphocytidyl-2C-m 97.1 0.00023 8E-09 56.1 3.2 41 71-116 219-260 (283)
28 3m05_A Uncharacterized protein 74.7 5.9 0.0002 27.0 5.0 51 73-124 17-72 (114)
29 2cz4_A Hypothetical protein TT 65.8 13 0.00046 25.2 5.3 51 72-123 35-99 (119)
30 2j9c_A GLNK1, hypothetical nit 61.8 19 0.00066 24.1 5.5 50 73-123 14-85 (119)
31 1vfj_A Nitrogen regulatory pro 58.8 27 0.00093 23.1 5.8 50 73-123 12-83 (116)
32 2eg2_A Nitrogen regulatory pro 56.1 40 0.0014 22.1 6.5 50 73-123 12-83 (112)
33 1o51_A Hypothetical protein TM 53.2 18 0.00062 24.4 4.1 49 71-120 29-97 (114)
34 2o66_A PII protein; regulation 51.3 34 0.0011 23.7 5.4 50 73-123 24-96 (135)
35 2ns1_B Nitrogen regulatory pro 50.2 52 0.0018 21.7 7.2 50 73-123 16-87 (116)
36 2gw8_A PII signal transduction 47.7 57 0.0019 21.4 6.1 50 73-123 14-85 (114)
37 3bzq_A Nitrogen regulatory pro 47.3 56 0.0019 21.4 5.9 50 73-123 14-85 (114)
38 3t9z_A GLNK3, nitrogen regulat 45.5 64 0.0022 21.7 6.0 50 73-123 12-83 (118)
39 2a0b_A HPT domain; sensory tra 43.9 67 0.0023 21.1 8.1 54 8-65 12-67 (125)
40 3ncq_A Nitrogen regulatory pro 43.8 67 0.0023 21.6 5.9 50 73-123 12-83 (119)
41 3p0b_A TT1467 protein; glycosi 43.2 1.1E+02 0.0039 26.1 8.4 109 21-139 89-200 (540)
42 3iz5_c 60S ribosomal protein L 38.9 34 0.0012 23.6 3.7 64 4-69 10-75 (124)
43 2i9o_A MHB8A peptide; beta-hai 36.8 33 0.0011 18.0 2.6 13 109-121 22-34 (37)
44 1hwu_A PII protein; herbaspiri 36.1 88 0.003 20.3 6.6 50 73-123 12-83 (112)
45 3n98_A Alpha-amylase, GH57 fam 32.8 2.4E+02 0.0081 24.3 8.8 106 22-139 71-179 (562)
46 3k4g_A DNA-directed RNA polyme 31.2 28 0.00095 22.4 2.1 53 39-92 21-75 (86)
47 4a17_U RPL35, 60S ribosomal pr 29.7 40 0.0014 23.2 2.9 63 4-68 9-74 (124)
48 2i7u_A Four-alpha-helix bundle 28.6 8.5 0.00029 22.5 -0.7 14 94-107 30-43 (62)
49 3dfe_A Putative PII-like signa 25.3 73 0.0025 21.1 3.5 50 73-123 17-86 (111)
50 2lwd_A Probable ATP-dependent 24.1 1.5E+02 0.0052 19.2 5.7 60 7-66 27-94 (100)
51 2ypd_A Probable JMJC domain-co 23.9 2.2E+02 0.0074 23.4 6.6 53 96-148 230-304 (392)
52 3h3m_A Flagellar protein FLIT; 22.6 68 0.0023 22.0 3.0 11 71-81 96-106 (126)
53 3t37_A Probable dehydrogenase; 22.3 11 0.00036 31.1 -1.5 16 88-103 18-33 (526)
54 3a7m_A Flagellar protein FLIT; 21.7 1.4E+02 0.0049 20.1 4.5 39 20-58 56-94 (122)
55 2jr3_A Pelovaterin; beta-defen 21.7 29 0.00098 18.7 0.7 8 94-101 10-17 (42)
56 3myf_A Sensor protein; HPT, hi 21.5 1.8E+02 0.0062 19.1 8.6 57 21-81 18-78 (119)
57 2o7a_A Lysozyme; protein foldi 21.1 2E+02 0.0068 19.4 5.6 59 20-83 33-97 (124)
58 3ce8_A Putative PII-like nitro 20.4 1.6E+02 0.0056 19.8 4.6 66 73-148 34-118 (120)
59 2iqt_A Fructose-bisphosphate a 20.4 1.7E+02 0.0058 23.1 5.2 29 71-106 123-151 (296)
60 3iqt_A Signal transduction his 20.3 2E+02 0.0068 19.1 7.0 57 21-81 27-87 (123)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=99.96 E-value=3.5e-29 Score=215.54 Aligned_cols=126 Identities=30% Similarity=0.518 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcC
Q 031942 23 TLAKRAEHYFTENRRVAKGLEAWKSG-------NSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSG 94 (150)
Q Consensus 23 ~~~~r~~~~v~e~~r~~~~~~aL~~~-------d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisG 94 (150)
++++|++|++.|+.|+.+++++|.++ |++.||++|+++|.+||++|+| ||++|.|++.+++ .|++|+||||
T Consensus 381 ~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~-~Ga~GarlTG 459 (520)
T 3v2u_C 381 KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALA-NGSFGSRLTG 459 (520)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh-CCCCEEEEec
Confidence 47899999999999999999999997 5999999999999999999999 9999999999998 8999999999
Q ss_pred CCCcceeeeee---ccccHHHHHHHHHHHHHhh-ChhhhhhcCCCceEEEeecCCCeeeC
Q 031942 95 AGFRGCCLALV---DADRAEEAASYVRSEYFEL-QPELASQLNADSAVLICKPGDCARVI 150 (150)
Q Consensus 95 aG~GG~vial~---~~~~~~~~~~~l~~~y~~~-~~~~~~~~~~~~~~~~~~p~~Ga~v~ 150 (150)
||||||+|+|+ +++.++++++.|.+.|+++ +|.+++ -+.++.+|+++|+.||+++
T Consensus 460 aG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~-~~~~~~~~~~~p~~GA~i~ 518 (520)
T 3v2u_C 460 AGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTD-EELKDAIIVSKPALGTCLY 518 (520)
T ss_dssp SCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCH-HHHHHHEEECCCCCCSEEE
T ss_pred CCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCcccc-ccCCCeEEEecCCCceEEe
Confidence 99999999999 8889999999999998865 243322 1346889999999999873
No 2
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=99.94 E-value=1.5e-25 Score=187.43 Aligned_cols=140 Identities=33% Similarity=0.490 Sum_probs=129.0
Q ss_pred CCcCCCCHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHH
Q 031942 3 PRLCNVEEEVYEAHKNELE-PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEI 80 (150)
Q Consensus 3 ~~lr~~~~~~l~~~~~~l~-~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~ 80 (150)
..||+++++++.++++.++ +..++|+.|++.|+.|+..++++|.++|++.||++|+++|.++++.|++ +|+++++++.
T Consensus 274 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~ 353 (419)
T 1pie_A 274 QSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAET 353 (419)
T ss_dssp SSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHH
T ss_pred CchhhCCHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 4578888888888888884 5688899999999999999999999999999999999999999998999 9999999999
Q ss_pred HhhCC-CCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCCeeeC
Q 031942 81 LQRAP-GVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 150 (150)
Q Consensus 81 a~~~~-Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 150 (150)
+++ . |++|+||||||||||+++|++++.++++++.|.+.|++. +|.++.+|+++|++|++++
T Consensus 354 a~~-~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~~~-------~g~~~~~~~~~~~~Ga~v~ 416 (419)
T 1pie_A 354 AQK-QAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEV-------VGYPASFYVAQIGSGSTKL 416 (419)
T ss_dssp HHH-STTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHH-------HSSCCEEEECCBCCCSBCC
T ss_pred HHh-cCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHHHh-------cCCCCeEEEEcCCCCeeec
Confidence 998 6 999999999999999999999988999999999999874 5889999999999999874
No 3
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=99.93 E-value=1.3e-25 Score=191.35 Aligned_cols=124 Identities=31% Similarity=0.493 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCc
Q 031942 23 TLAKRAEHYFTENRRVAKGLEAWKS---GNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFR 98 (150)
Q Consensus 23 ~~~~r~~~~v~e~~r~~~~~~aL~~---~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~G 98 (150)
.+++|+.|++.|+.|+..++++|.+ +|++.||++|+++|.++++.|++ +|++|++++.+++ .|++|+||||||||
T Consensus 347 ~~~~ra~h~~~e~~rv~~~~~aL~~~~~~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~-~Ga~GarltGAG~G 425 (478)
T 2a2c_A 347 KLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRK-FGAQGSRLTGAGWG 425 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh-CCCcEEEeccCCCc
Confidence 4678999999999999999999999 99999999999999999999999 9999999999998 89999999999999
Q ss_pred ceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcC-CCceEEEeecCCCeeeC
Q 031942 99 GCCLALVDADRAEEAASYVRSEYFELQPELASQLN-ADSAVLICKPGDCARVI 150 (150)
Q Consensus 99 G~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~-~~~~~~~~~p~~Ga~v~ 150 (150)
||+++|++++.+++++++|++.|++..+.. |+ ..+.+|+++|++||+++
T Consensus 426 G~viaLv~~~~~~~~~~~l~~~y~~~~~~~---~~~~~~~~~~~~p~~Ga~~~ 475 (478)
T 2a2c_A 426 GCTVSMVPADKLPSFLANVHKAYYQRSDGS---LAPEKQSLFATKPGGGALVL 475 (478)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHC------------CCSEEEECCBCCCEEE
T ss_pred cEEEEEEcHHHHHHHHHHHHHHHHHhcCcc---ccCCCCcEEEEcCCCCeEee
Confidence 999999999889999999999998852100 01 24689999999999874
No 4
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=99.93 E-value=7.9e-25 Score=177.83 Aligned_cols=124 Identities=31% Similarity=0.454 Sum_probs=115.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCC
Q 031942 18 NELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAG 96 (150)
Q Consensus 18 ~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG 96 (150)
..+++..++|+.|++.|..|+..+..+|.++|++.||++|+++|+.|++.|++ +|+++++++.+++ .|++|+||||+|
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~-~Ga~ga~lsGaG 304 (350)
T 2cz9_A 226 SKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALK-LGAYGARLTGAG 304 (350)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-TTCSEEEECSSC
T ss_pred hhCCHHHHHHHHHHhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-cCCCEEEEecCC
Confidence 35788788899999999999999999999999999999999999999998999 9999999999998 799999999999
Q ss_pred CcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCCeee
Q 031942 97 FRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 149 (150)
Q Consensus 97 ~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 149 (150)
||||+++|++++.++++.+.+.+.|++. ||+.+.+|+++|++|+++
T Consensus 305 ~G~~v~~l~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~Ga~~ 350 (350)
T 2cz9_A 305 FGGSAIALVDKEDAETIGEEILREYLKR-------FPWKARHFIVEPSDGVGI 350 (350)
T ss_dssp SSSEEEEEEEGGGHHHHHHHHHHHHHHH-------CCSCCEEEEECEECCSBC
T ss_pred CceEEEEEEchhhHHHHHHHHHHHHHHh-------hCCCCcEEEecCCCCCCC
Confidence 9999999999888999999999999874 688999999999999975
No 5
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=99.93 E-value=2.1e-24 Score=179.36 Aligned_cols=137 Identities=31% Similarity=0.500 Sum_probs=125.9
Q ss_pred CCcCCCCHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHH
Q 031942 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEIL 81 (150)
Q Consensus 3 ~~lr~~~~~~l~~~~~~l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a 81 (150)
..||+++.+++.++++.+++..++|+.|++.|+.|+..++++|.++|++.||++|+++|.++++.|++ +|+++++++.+
T Consensus 260 ~~l~~~~~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a 339 (399)
T 1wuu_A 260 ESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAA 339 (399)
T ss_dssp SSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999988999 99999999999
Q ss_pred hhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCCeeeC
Q 031942 82 QRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 150 (150)
Q Consensus 82 ~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 150 (150)
++..|++|+||||||||||+++|++++.++++.+.+.+.| +..+.+|++.|++|++++
T Consensus 340 ~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~Ga~~~ 397 (399)
T 1wuu_A 340 LAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY-----------GGTATFYLSQAADGAKVL 397 (399)
T ss_dssp HTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHC-----------SSCCEEEEECCCCCSEEC
T ss_pred HhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHHHHh-----------CCCCcEEEEcCCCCeeec
Confidence 8634999999999999999999999888899888888765 557899999999999875
No 6
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.80 E-value=3.6e-19 Score=147.57 Aligned_cols=113 Identities=14% Similarity=0.109 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCccee
Q 031942 24 LAKRAEHYFTENRRVAKG-LEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCC 101 (150)
Q Consensus 24 ~~~r~~~~v~e~~r~~~~-~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~v 101 (150)
.++|+.|++.+..++... +.+|.++|++.||++|+++|+.+++ |++ +|+++++++.+++ .|+ |+||||||||||+
T Consensus 264 ~~~~~~~~~~~~~~~l~~~~~al~~~d~~~lg~lm~~~~~~l~~-~~~~~p~l~~l~~~a~~-~Ga-ga~~sGaG~Gg~v 340 (395)
T 1kvk_A 264 LLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQVTAA-HGL-HSKLTGAGGGGCG 340 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH-HTCCCHHHHHHHHHHHH-TTC-EEEECSSCSSSEE
T ss_pred HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCC-ceeeccCCCCCEE
Confidence 567888999999887766 6788889999999999999999997 899 9999999999998 799 9999999999999
Q ss_pred eeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEee-cCCCeee
Q 031942 102 LALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICK-PGDCARV 149 (150)
Q Consensus 102 ial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-p~~Ga~v 149 (150)
++|++++..+++++.+.+.|++. ++ .+|+++ ++.|+++
T Consensus 341 ~~l~~~~~~~~~~~~~~~~~~~~--------g~--~~~~~~~~~~G~~v 379 (395)
T 1kvk_A 341 ITLLKPGLERAKVEAAKQALTGC--------GF--DCWETSIGAPGVSM 379 (395)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHT--------TC--EEEEEEESCCCSEE
T ss_pred EEEecCCCCHHHHHHHHHHHHHc--------CC--EEEEEecCCCcEEE
Confidence 99999887888888888888763 43 578888 6699876
No 7
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=1.5e-19 Score=148.76 Aligned_cols=107 Identities=18% Similarity=0.172 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhh-cCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeee
Q 031942 26 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYN-YEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLA 103 (150)
Q Consensus 26 ~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~-~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~via 103 (150)
.|+.|.+.+ ++.+++++|.++|++.||++|+++|.++++. |++ +|++|++++.+++ .|++|+||||||+|||+++
T Consensus 229 ~~~~~~i~~--~~~~~~~aL~~~d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~-~Ga~GaklsGaG~gG~via 305 (357)
T 3k85_A 229 IEAMHKIKQ--SAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATG-AGAMAGKVSGAGGGGFIMF 305 (357)
T ss_dssp THHHHHHHH--HHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTT-SCCSEEEECCCC---CEEE
T ss_pred HHHHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-cCCeEeEecccCCCCEEEE
Confidence 456677765 6788999999999999999999999999986 899 9999999999998 8999999999999999999
Q ss_pred eeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeee
Q 031942 104 LVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 104 l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 149 (150)
|++++.++++.++|++. | ..++.++++ .|+++
T Consensus 306 l~~~~~~~~~~~~l~~~------------g--~~~~~~~~~~~G~~v 338 (357)
T 3k85_A 306 VVEPTRKEEVVRALNNL------------N--GFVMPFQFIDDGAHG 338 (357)
T ss_dssp ECCHHHHHHHHHHHHTS------------S--SCBCCCCBCCCCCEE
T ss_pred EecHHHHHHHHHHHHHC------------C--CeEEEeEEcCCceEE
Confidence 99887777777776542 3 345667766 78775
No 8
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=99.77 E-value=3.7e-18 Score=136.99 Aligned_cols=88 Identities=20% Similarity=0.182 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhh-cCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccc
Q 031942 31 YFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYN-YEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 108 (150)
Q Consensus 31 ~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~-~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~ 108 (150)
+.....++.++..+|.++|++.||++|+++|++|++. +++ +|++|+|++.+++ .|+ |+||||||||||+|||++++
T Consensus 229 ~~~~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~-~g~-~akltGAG~Ggc~ial~~~~ 306 (335)
T 3gon_A 229 LTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-LQA-VAKSSGAGGGDCGIALSFDA 306 (335)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-SSE-EEEECTTCSSSEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHh-CCc-EEEEccccchheEEEEECCH
Confidence 3345566888999999999999999999999999985 478 9999999999998 785 89999999999999999754
Q ss_pred cHHHHHHHHHHHHHh
Q 031942 109 RAEEAASYVRSEYFE 123 (150)
Q Consensus 109 ~~~~~~~~l~~~y~~ 123 (150)
. ..+.|.++|++
T Consensus 307 ~---~~~~i~~~~~~ 318 (335)
T 3gon_A 307 Q---STKTLKNRWAD 318 (335)
T ss_dssp H---HHHHHHHHHHH
T ss_pred H---HHHHHHHHHHH
Confidence 3 23345555554
No 9
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.72 E-value=1.5e-16 Score=128.96 Aligned_cols=96 Identities=27% Similarity=0.370 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHH
Q 031942 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASY 116 (150)
Q Consensus 38 ~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~ 116 (150)
+..++.+|.++|++.|+++|+.+|. +++.+++ +|+++++++.+++ .|++|+||||+|+|||+++|++++.++++.+.
T Consensus 223 ~~~~~~al~~~d~~~lg~~~~~~~~-~~~~~~v~~p~l~~l~~~a~~-~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~ 300 (321)
T 4hac_A 223 SRIGEQLVLSGDYASIGRLMNVNQG-LLDALGVNILELSQLIYSARA-AGAFGAKITGAGGGGCMVALTAPEKCNQVAEA 300 (321)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-HHHHHTCCCHHHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEECSTTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-HHhhcCCCCHHHHHHHHHHHH-CCCCEEEECccCCCCEEEEEcCHHHHHHHHHH
Confidence 4567899999999999999999885 5567899 9999999999998 89999999999999999999977778887777
Q ss_pred HHHHHHhhChhhhhhcCCCceEEEeecC-CCeee
Q 031942 117 VRSEYFELQPELASQLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 117 l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 149 (150)
|++. + ..+|+++++ .|++|
T Consensus 301 l~~~------------g--~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 301 VAGA------------G--GKVTITKPTEQGLKV 320 (321)
T ss_dssp HHHT------------T--CEEEEECBCSCSSEE
T ss_pred HHhC------------C--CeEEEEEECCCceec
Confidence 6542 3 478899988 89886
No 10
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.66 E-value=2e-15 Score=121.82 Aligned_cols=102 Identities=20% Similarity=0.271 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecccc-HHHHH
Q 031942 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAA 114 (150)
Q Consensus 37 r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~ 114 (150)
++..+..+|.++|++.|+++|+++|..++. |++ +|+++++++.+++ .|++|+||||+|+|||+++|++++. ++++.
T Consensus 229 ~~~~~~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~ 306 (332)
T 2hfs_A 229 IVSQAREALQKGDLQRLGQLMNANHDLCRQ-IDVSCRELESIVQTCRT-YGALGAKLSGTGRGGIAVALAASSDQRDAIV 306 (332)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHH-TTCSEEEEESSCSSSEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH-cCCceEEeccCCCCcEEEEEecCcccHHHHH
Confidence 456788999999999999999999877764 789 9999999999998 8999999999999999999998764 67888
Q ss_pred HHHHHHHHhhChhhhhhcCCCceEEEeecCCCeee
Q 031942 115 SYVRSEYFELQPELASQLNADSAVLICKPGDCARV 149 (150)
Q Consensus 115 ~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 149 (150)
+.+.+.|... ++. ..+.+.|++||++
T Consensus 307 ~~l~~~~~~~--------~~~-~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 307 KGLKAKCPEA--------KFI-WRYTVQPSAASNL 332 (332)
T ss_dssp HHHHHHCTTC--------CEE-EEEEECCSCC---
T ss_pred HHHHHHHhcC--------Cce-EEEEeccCCCCCC
Confidence 8888776552 322 2355778899874
No 11
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.62 E-value=2.8e-15 Score=119.74 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecc-ccHHHH
Q 031942 36 RRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEA 113 (150)
Q Consensus 36 ~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~-~~~~~~ 113 (150)
.++.++..+|.++|++.|+++|+++|..+++ +++ +|+++++++.+++ .|++|+||||+|+|||+++|+++ +.++++
T Consensus 212 ~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~GG~v~~l~~~~~~~~~~ 289 (308)
T 2x7i_A 212 KLVLRASDVIEHHKFEALADIFNECHADLKA-LTVSHDKIEQLMKIGKE-NGAIAGKLTGAGRGGSMLLLAKDLPTAKNI 289 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHH-TTCSEEEESBTTTCSSEEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH-CCCcEEEeeccCCCcEEEEEeCChhHHHHH
Confidence 3567788999999999999999999999997 788 9999999999998 89999999999999999999987 567777
Q ss_pred HHHHHHH
Q 031942 114 ASYVRSE 120 (150)
Q Consensus 114 ~~~l~~~ 120 (150)
.+.+++.
T Consensus 290 ~~~l~~~ 296 (308)
T 2x7i_A 290 VKAVEKA 296 (308)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 7776654
No 12
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.62 E-value=3.8e-15 Score=122.92 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=76.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhc-----CC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcc
Q 031942 27 RAEHYFTENR-RVAKGLEAWKSGNSQDFGKLISASGLSSIYNY-----EC-SEPLIQLNEILQRAPGVFGARFSGAGFRG 99 (150)
Q Consensus 27 r~~~~v~e~~-r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~-----~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG 99 (150)
+..+++.+.. ++.+++++|.++|++.||++|+++|+.|++.- .+ +|++|+|++.+++ .|++ +|||||||||
T Consensus 243 ~~~~~~~~~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~l~v~~~~~is~p~ld~l~~~a~~-~Ga~-ak~sGAGgGg 320 (365)
T 3k17_A 243 NYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAEN-MGGA-GKSSGSGGGD 320 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHH-TTSE-EEECTTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhcCCcccCHHHHHHHHHHHh-cCCE-EEecCCCCCC
Confidence 3567888865 56889999999999999999999999999732 45 9999999999998 8999 9999999999
Q ss_pred eeeeeeccc-cHHHHHHHHHH
Q 031942 100 CCLALVDAD-RAEEAASYVRS 119 (150)
Q Consensus 100 ~vial~~~~-~~~~~~~~l~~ 119 (150)
|+++|++++ .++++.+++++
T Consensus 321 ~vial~~~~~~~~~l~~~l~~ 341 (365)
T 3k17_A 321 CGIAFSKTKELAEKLVNEWEK 341 (365)
T ss_dssp EEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHH
Confidence 999999864 35555555443
No 13
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.59 E-value=1.7e-14 Score=113.99 Aligned_cols=82 Identities=26% Similarity=0.345 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecc-ccHHHHHH
Q 031942 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAAS 115 (150)
Q Consensus 38 ~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~-~~~~~~~~ 115 (150)
+..+..+|.++|++.|+++|+++|..+++ +++ +|+++++++.+++ .|++|++|||+|+|||+++|+++ +.++++.+
T Consensus 200 ~~~~~~al~~~d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~-~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~ 277 (292)
T 2oi2_A 200 TQQAEIAISQKDAEGLGQILSQAHLHLKE-IGVSSLEADSLVETALS-HGALGAKMSGGGLGGCIIALVTNLTHAQELAE 277 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHT-TTCSEEEEESSSSSSEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHh-CCCceeeeccCCCCcEEEEEecCchHHHHHHH
Confidence 45778999999999999999999998987 688 9999999999998 89999999999999999999987 55777777
Q ss_pred HHHHHH
Q 031942 116 YVRSEY 121 (150)
Q Consensus 116 ~l~~~y 121 (150)
.+++.+
T Consensus 278 ~l~~~~ 283 (292)
T 2oi2_A 278 RLEEKG 283 (292)
T ss_dssp HHHHHT
T ss_pred HHHhcC
Confidence 776543
No 14
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.59 E-value=2.7e-14 Score=116.45 Aligned_cols=100 Identities=21% Similarity=0.189 Sum_probs=77.5
Q ss_pred HHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhc-CC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecc
Q 031942 31 YFTE-NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNY-EC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA 107 (150)
Q Consensus 31 ~v~e-~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~-~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~ 107 (150)
++.+ ..++.+++++|.++|++.||++|+++|..+++.. .+ +|+++++++.+++ .|++ +||||||||||+++|+++
T Consensus 230 ~~~~~~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~-~Ga~-ak~sGaGgGg~vial~~~ 307 (337)
T 2pg9_A 230 FLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQD-LQAV-AKSSGAGGGDCGIALSFD 307 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTT-SSEE-EEECTTCSSSEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHH-CCCE-EEEeCCCCccEEEEEECC
Confidence 3444 4456789999999999999999999999999754 28 9999999999998 7999 999999999999999976
Q ss_pred c-cHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCC
Q 031942 108 D-RAEEAASYVRSEYFELQPELASQLNADSAVLICKPGD 145 (150)
Q Consensus 108 ~-~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~ 145 (150)
+ .++++.++|+ +. |+.+ .|+.+.++
T Consensus 308 ~~~~~~~~~~l~----~~--------g~~~-~~~~~~~~ 333 (337)
T 2pg9_A 308 AQSTKTLKNRWA----DL--------GIEL-LYQERIGH 333 (337)
T ss_dssp HHHHHHHHHHHH----HT--------TCEE-EEEEEC--
T ss_pred HHHHHHHHHHHH----HC--------CCEE-EEEeeccc
Confidence 4 3555444444 32 6665 45555543
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.49 E-value=8.8e-13 Score=105.59 Aligned_cols=75 Identities=32% Similarity=0.453 Sum_probs=66.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccccHHHHHHHHH
Q 031942 41 GLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVR 118 (150)
Q Consensus 41 ~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~~~~~~~~l~ 118 (150)
..+++..+|++.|+++|+++|..++. +++ +|+++++++.+++ .| +|+||||+|+|||+++|++++.++++.++++
T Consensus 229 ~~~a~~~~d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~-~G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~ 304 (317)
T 1kkh_A 229 IDEALKIKNKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNR-FG-FGAKLTGAGGGGCVIILVNEEKEKELLKELN 304 (317)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHH-HS-SEEEECSSSSSEEEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHh-cC-ceeEEeecCCCCEEEEEechhhHHHHHHHHH
Confidence 45778889999999999999988775 799 9999999999998 79 9999999999999999998877777666655
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.44 E-value=2.8e-13 Score=107.39 Aligned_cols=101 Identities=15% Similarity=0.216 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeee
Q 031942 29 EHYFTENRRVAKGLEAWKSGNSQDFGKLI--SASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV 105 (150)
Q Consensus 29 ~~~v~e~~r~~~~~~aL~~~d~~~~g~lm--~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~ 105 (150)
.+.+.+..++..++.+|.++|++.||++| |..|+.++. + +|+++++++.+++ . ++|++|||+| +|+++|+
T Consensus 193 ~~~~~~~~~~~~~~~al~~~d~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~-~-a~ga~~sGsG--~~v~~l~ 265 (296)
T 1h72_C 193 KDLVNNVGKACGMVYALYNKDKSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKD-K-VYGITISGSG--PSIIAFP 265 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTT-T-EEEEEECTTS--SCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHh-h-cceEEEecCC--hheEEEe
Confidence 47778888888899999999999999999 666666653 4 9999999999998 6 8999999999 6999999
Q ss_pred ccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCCeeeC
Q 031942 106 DADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 150 (150)
Q Consensus 106 ~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 150 (150)
+++.++++.+.+++.|.. + ++++|..|+++|
T Consensus 266 ~~~~~~~~~~~l~~~~~~------------~--~~~~~~~Ga~v~ 296 (296)
T 1h72_C 266 KEEFIDEVENILRDYYEN------------T--IRTEVGKGVEVV 296 (296)
T ss_dssp CGGGHHHHHHHHHHHCSC------------E--EEECBCCCCEEC
T ss_pred cHHHHHHHHHHHHHhccC------------c--eeccCCCCeEeC
Confidence 777788888887765432 2 277889999886
No 17
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.39 E-value=2.2e-12 Score=103.66 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccc
Q 031942 31 YFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD 108 (150)
Q Consensus 31 ~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~ 108 (150)
.+.+..++..++.+|.++|++.|+++|+.. .+++.|.. +|+++++++.+++ .|++|++|||+| +|+++|++++
T Consensus 184 ~~~~~~~~~~~~~al~~~d~~~l~~~l~nd--~~~e~~~~~~~p~l~~l~~~~~~-~Ga~ga~~SGsG--ptv~al~~~~ 258 (298)
T 3hul_A 184 AVQASSIANVMIAAILRNDMTLAGEMMERD--LWHEKYRSQLVPHLAQIRDVAKN-QGAYAACLSGAG--PTVLVFAPRN 258 (298)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHTCC--CC-----CTTGGGHHHHHHHHHT-TTCCEEEECTTS--SCEEEEECGG
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHhhh--HHHHHHHHhhCchHHHHHHHHHH-CCCEEEEEeccc--hheEEEECHH
Confidence 455666778899999999999999999521 12333433 8999999999998 899999999999 8999999866
Q ss_pred cHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeee
Q 031942 109 RAEEAASYVRSEYFELQPELASQLNADSAVLICKPG-DCARV 149 (150)
Q Consensus 109 ~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v 149 (150)
.++++.+.+++ . +..+.+++++++ .|++|
T Consensus 259 ~a~~v~~~l~~----~--------~~~~~~~~~~~~~~Ga~v 288 (298)
T 3hul_A 259 LANKLQTSLQT----L--------EIDADVLLLDVEGSGAEV 288 (298)
T ss_dssp GHHHHHHHHHT----T--------CCSSEEEEEEBCCCCCEE
T ss_pred HHHHHHHHHHh----c--------CCCcEEEEcccCCCceEE
Confidence 67776555543 2 667889999988 99987
No 18
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.36 E-value=4.9e-12 Score=103.12 Aligned_cols=106 Identities=15% Similarity=0.138 Sum_probs=84.0
Q ss_pred HHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--------ChHHHHHHHHHh---hCCCCeeEEEcCCCC
Q 031942 30 HYFTENR-RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--------SEPLIQLNEILQ---RAPGVFGARFSGAGF 97 (150)
Q Consensus 30 ~~v~e~~-r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--------~p~~d~l~~~a~---~~~Ga~GakisGaG~ 97 (150)
+.+.+.. ++..++.+|.++|++.|+++|...+..|++.|.. +|+++++++.+. + .|++|+.+||+|
T Consensus 213 ~~v~~~~~~~~~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~-~Ga~~a~~SGaG- 290 (332)
T 3qt5_A 213 YWLDHVDEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRK-ANLPCYFTMDAG- 290 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSS-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHh-CCCcEEEEeCCC-
Confidence 3444455 7888999999999999999998665567765432 588888888884 6 899999999888
Q ss_pred cceeeeeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEe-ecCCCeeeC
Q 031942 98 RGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLIC-KPGDCARVI 150 (150)
Q Consensus 98 GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~-~p~~Ga~v~ 150 (150)
+|+++|+++++++++.+.+++.|. ..+++++ .|+.|++++
T Consensus 291 -Ptv~~l~~~~~a~~v~~~l~~~~~------------~~~~~v~~~~g~G~~~~ 331 (332)
T 3qt5_A 291 -PNVKVLVEKKNKQAVMEQFLKVFD------------ESKIIASDIISSGVEII 331 (332)
T ss_dssp -SCEEEEEEHHHHHHHHHHHHTTSC------------GGGEEEEEBCSSCCEEC
T ss_pred -CcEEEEECHHHHHHHHHHHHHhCC------------CceEEEeccccCCcEec
Confidence 999999987777777777765432 3478888 899999875
No 19
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.30 E-value=1.1e-10 Score=93.74 Aligned_cols=98 Identities=18% Similarity=0.125 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-Ch-------HHHHHHH---HHhhCCCCeeEEEcCCCCcceee
Q 031942 34 ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SE-------PLIQLNE---ILQRAPGVFGARFSGAGFRGCCL 102 (150)
Q Consensus 34 e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p-------~~d~l~~---~a~~~~Ga~GakisGaG~GG~vi 102 (150)
...++..++.+|.++|++.||++|+++|+.|++.|.. +| ...++.+ .++. .|++++.+||+| ||++
T Consensus 209 ~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~-~G~~~~~~SGaG--ptv~ 285 (317)
T 2gs8_A 209 SAIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQ-EGFACYFTMDAG--PNVK 285 (317)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHH-TTCCEEEECCSS--SCEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHh-cCCcEEEEecCC--CeEE
Confidence 4677888999999999999999999999999986655 44 4455554 4455 799999999998 9999
Q ss_pred eeeccccHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCCeee
Q 031942 103 ALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 149 (150)
Q Consensus 103 al~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 149 (150)
+|++++.++++.+.+.+ .+.+|++++++|++|
T Consensus 286 ~l~~~~~~~~v~~~l~~---------------~~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 286 VLCLEKDLAQLAERLGK---------------NYRIIVSKTKDLPDV 317 (317)
T ss_dssp EEEEGGGHHHHHHHHHT---------------TSEEEEEEBCCCCCC
T ss_pred EEEcHHHHHHHHHHHhc---------------CCeEEEEecCCCCCC
Confidence 99988777776666553 258999999999986
No 20
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.08 E-value=2.2e-10 Score=92.31 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecccc-HHHH
Q 031942 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEA 113 (150)
Q Consensus 37 r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~ 113 (150)
++..+..+|.++|++.+++.|. +.+ +.+.. +|+++++++.+++ .|++|++|||+| +|+++|++.+. ++++
T Consensus 202 ~~~~~~~al~~~d~~~l~~~l~---n~l-e~~~~~~~P~l~~i~~~~~~-~Ga~ga~mSGsG--ptvfal~~~~~~a~~~ 274 (306)
T 3pyf_A 202 EPGPVLAALAAGDPDQLAPLLG---NEM-QAAAVSLDPALARALRAGVE-AGALAGIVSGSG--PTCAFLCTSASSAIDV 274 (306)
T ss_dssp CHHHHHHHHHHTCHHHHGGGCE---ETT-HHHHHHHCTHHHHHHHHHHH-TTCSEEEECTTS--SEEEEEESSHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHhc---cch-HHHHHHhChHHHHHHHHHHh-cCCCEEEEcCcc--hhheEEeCCHHHHHHH
Confidence 4567889999999999999883 223 23332 8999999999998 899999999999 99999997643 5555
Q ss_pred HHHHHHHHHhhChhhhhhcCCCceEEEeecC-CCeeeC
Q 031942 114 ASYVRSEYFELQPELASQLNADSAVLICKPG-DCARVI 150 (150)
Q Consensus 114 ~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v~ 150 (150)
.+.+. +. |....++++++. .|++|+
T Consensus 275 ~~~l~----~~--------g~~~~v~~~~~~~~Ga~v~ 300 (306)
T 3pyf_A 275 GAQLS----GA--------GVCRTVRVATGPVPGARVV 300 (306)
T ss_dssp HHHHH----HT--------TSSSEEEEEEECCBCSEEC
T ss_pred HHHHH----hc--------CCcceEEEeecCCCCCEEe
Confidence 44444 32 677789998866 999874
No 21
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=98.89 E-value=2e-08 Score=82.93 Aligned_cols=88 Identities=16% Similarity=0.119 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHh------hcCC--ChHHHHHHHHHhh--CC-C-CeeEEEcCCCCccee
Q 031942 34 ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIY------NYEC--SEPLIQLNEILQR--AP-G-VFGARFSGAGFRGCC 101 (150)
Q Consensus 34 e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~------~~~v--~p~~d~l~~~a~~--~~-G-a~GakisGaG~GG~v 101 (150)
...++..++.+|.++|++.|+++|.+.++.|++ +|.. .|...++++.+.+ .. | ++++.+||+| +++
T Consensus 221 ~~~~~~~l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~~a~~SGaG--Ptv 298 (380)
T 2hke_A 221 VPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAG--ANC 298 (380)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcceEEEECCC--CcE
Confidence 466788899999999999999999877777774 4544 8888888877654 13 8 7889999888 999
Q ss_pred eeeeccccHHHHHHHHHHHHHh
Q 031942 102 LALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 102 ial~~~~~~~~~~~~l~~~y~~ 123 (150)
++|+++++++++.+.+.+.|..
T Consensus 299 ~~l~~~~~~~~v~~~l~~~~~~ 320 (380)
T 2hke_A 299 FLFVLKEDLPEAVAMLMEHFPT 320 (380)
T ss_dssp EEEEEGGGHHHHHHHHHHHSCC
T ss_pred EEEECHHHHHHHHHHHHHhccc
Confidence 9999887788888888877653
No 22
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=98.73 E-value=1.3e-07 Score=79.14 Aligned_cols=86 Identities=12% Similarity=-0.010 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcC------C--ChHHHHHHHHHhhC---CC-CeeEEEcCCCCcceee
Q 031942 35 NRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE------C--SEPLIQLNEILQRA---PG-VFGARFSGAGFRGCCL 102 (150)
Q Consensus 35 ~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~------v--~p~~d~l~~~a~~~---~G-a~GakisGaG~GG~vi 102 (150)
..++..++.+|.++|++.||++|.++++.|++.|. . .|...++.+.+.+. .| +.++.+||+| +|++
T Consensus 251 ~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~ 328 (416)
T 1fi4_A 251 PKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAV 328 (416)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEE
Confidence 56788899999999999999999988888887332 2 66777777665431 27 7888999999 9999
Q ss_pred eeeccccHHHHHHHHHHHHH
Q 031942 103 ALVDADRAEEAASYVRSEYF 122 (150)
Q Consensus 103 al~~~~~~~~~~~~l~~~y~ 122 (150)
+|++++.++++.+.+.+.|.
T Consensus 329 al~~~~~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 329 LYYLAENESKLFAFIYKLFG 348 (416)
T ss_dssp EEEEGGGHHHHHHHHHHHHT
T ss_pred EEECHHHHHHHHHHHHHhcc
Confidence 99988788889999988776
No 23
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=98.69 E-value=1.3e-07 Score=76.88 Aligned_cols=88 Identities=10% Similarity=0.065 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHh------hcCC--ChHHHHHHHHHhh---CCCCeeEEEcCCCCcceee
Q 031942 34 ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIY------NYEC--SEPLIQLNEILQR---APGVFGARFSGAGFRGCCL 102 (150)
Q Consensus 34 e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~------~~~v--~p~~d~l~~~a~~---~~Ga~GakisGaG~GG~vi 102 (150)
...++..++.+|.++|++.|++++......|++ +|.. .|+..++++.+.+ ..|++|+.++||| ++++
T Consensus 212 ~~~~~~~l~~AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAG--Pnv~ 289 (323)
T 3lto_A 212 AEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG--PNVH 289 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSS--SCEE
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCC--CCeE
Confidence 456788999999999999999988766556664 5555 8887776666644 2689999999999 9999
Q ss_pred eeeccccHHHHHHHHHHHHHh
Q 031942 103 ALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 103 al~~~~~~~~~~~~l~~~y~~ 123 (150)
+|+++++.+++.+.+.+.|..
T Consensus 290 ~l~~~~~~~~v~~~l~~~~~~ 310 (323)
T 3lto_A 290 LLYRSDQTDLARQFKSDHLVG 310 (323)
T ss_dssp EEECGGGHHHHHHHHHHHTTT
T ss_pred EEEecccHHHHHHHHHHHhHh
Confidence 999999999999998876543
No 24
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=98.66 E-value=4e-07 Score=76.28 Aligned_cols=93 Identities=13% Similarity=0.037 Sum_probs=73.4
Q ss_pred HHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHh------hcCC--ChHHHHHHHHHhhC----CCCeeEEEcC
Q 031942 29 EHYFT--ENRRVAKGLEAWKSGNSQDFGKLISASGLSSIY------NYEC--SEPLIQLNEILQRA----PGVFGARFSG 94 (150)
Q Consensus 29 ~~~v~--e~~r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~------~~~v--~p~~d~l~~~a~~~----~Ga~GakisG 94 (150)
.+.+. ...++..++.||.++|++.||+++......|+. ++.. .|...++++.+.+. .|++++.++|
T Consensus 240 ~~~v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsd 319 (414)
T 3f0n_A 240 KFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFD 319 (414)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 45555 367888999999999999999987655445664 4444 78877777777652 2899999999
Q ss_pred CCCcceeeeeeccccHHHHHHHHHHHHHh
Q 031942 95 AGFRGCCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 95 aG~GG~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
|| +++++|+++++.+++.+.|.+.|..
T Consensus 320 AG--Pnv~vl~~~~~~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 320 AG--PNAVIFTLEDTVAEFVAAVRHSFPP 346 (414)
T ss_dssp SS--SCEEEEEEHHHHHHHHHHHHHHSCC
T ss_pred CC--CCEEEEEecccHHHHHHHHHHhcCC
Confidence 99 9999999998999999999876654
No 25
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=98.33 E-value=1.1e-06 Score=68.90 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=44.9
Q ss_pred ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeeccc-cHHHHHHHHHHHHHhhChhhhhhcCCCceEEEeecCCC
Q 031942 71 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDAD-RAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDC 146 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~-~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~G 146 (150)
+|+++++++.+++ .|++|++|||+| ||+++|++++ .++++.+.+. + .. .+|++++++|
T Consensus 210 ~p~l~~l~~~~~~-~Ga~ga~~SGsG--~~v~~l~~~~~~~~~~~~~l~----~----------~~-~~~~~~~~~g 268 (275)
T 1uek_A 210 FPELKEVRGRMRA-LGLRGVLMSGSG--SAFFGLAEGPDHARRAAEALR----A----------WG-RAWAGTLGGG 268 (275)
T ss_dssp CTHHHHHHHHHHH-TTCEEEEECTTS--SCEEEECSSHHHHHHHHHHHT----T----------TS-EEEEEEECCC
T ss_pred ChHHHHHHHHHHh-CCCCEEEEeccc--cCeEEEeCCHHHHHHHHHHhh----h----------cc-EEEEEEecCC
Confidence 8999999999998 899999999999 8999999764 3444443333 2 12 6888888755
No 26
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=97.90 E-value=1.1e-06 Score=68.91 Aligned_cols=68 Identities=13% Similarity=-0.038 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEE-EcCCCCcceeeeeecccc-HHHHH
Q 031942 38 VAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGAR-FSGAGFRGCCLALVDADR-AEEAA 114 (150)
Q Consensus 38 ~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~Gak-isGaG~GG~vial~~~~~-~~~~~ 114 (150)
+..+ .+|.++|++.++++|. +.+.+.-.. +|+++++++.+++ .|+ ++ |||+| ||+++|++++. ++++.
T Consensus 189 ~~~~-~al~~~d~~~~~~~~~---n~l~~~~~~~~p~l~~~~~~~~~-~Ga--a~~mSGsG--~~v~~l~~~~~~a~~~~ 259 (271)
T 2v8p_A 189 PEYA-EEKIQRIISGEVEEIE---NVLGDIARELYPEINEVYRFVEY-LGF--KPFVSGSG--STVYFFGGASEELKKAA 259 (271)
T ss_dssp HHHH-HHHHHHHHTTCGGGCC---BHHHHHHHHHCHHHHHHHHHHHH-TTC--CCEECTTS--SCEEESSCCCHHHHHHH
T ss_pred hhHH-HHhhcCCHHHHHHHHh---CChhhHhHHhChHHHHHHHHHHh-CCC--ccCccccC--cCeEEEeCCHHHHHHHH
Confidence 3344 8888999999998872 233332223 8999999999998 798 99 99999 99999997653 44433
No 27
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=97.14 E-value=0.00023 Score=56.14 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeecccc-HHHHHHH
Q 031942 71 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADR-AEEAASY 116 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~~~~-~~~~~~~ 116 (150)
+|+++++++.+++ .| |++|||+| +|+++|++++. ++++.+.
T Consensus 219 ~p~l~~i~~~~~~-~G--~a~~SGsG--~tvf~l~~~~~~a~~~~~~ 260 (283)
T 2ww4_A 219 FREVDAVLSWLLE-YA--PSRLTGTG--ACVFAEFDTESEARQVLEQ 260 (283)
T ss_dssp CHHHHHHHHHHHT-TS--CEEECTTS--SCEEEEESSHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH-cC--CceECCcc--cceEEEeCCHHHHHHHHHH
Confidence 8999999999998 78 89999998 99999997542 4444333
No 28
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=74.73 E-value=5.9 Score=27.04 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhCCCCeeEEEcCCCCcc-----eeeeeeccccHHHHHHHHHHHHHhh
Q 031942 73 PLIQLNEILQRAPGVFGARFSGAGFRG-----CCLALVDADRAEEAASYVRSEYFEL 124 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~GakisGaG~GG-----~vial~~~~~~~~~~~~l~~~y~~~ 124 (150)
.++++.+...+ .|..|.+++-.|++| .+...+++++++++++.|.+..+.+
T Consensus 17 kld~V~~AL~~-~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR 72 (114)
T 3m05_A 17 DANYLSDQFID-QNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTR 72 (114)
T ss_dssp HHHHHHHHHHH-TTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHH-CCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCc
Confidence 36777777777 899998887655333 4566677788999999999877654
No 29
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=65.80 E-value=13 Score=25.20 Aligned_cols=51 Identities=27% Similarity=0.335 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhhCCCCeeEEEc---CCCCcc-----------eeeeeeccccHHHHHHHHHHHHHh
Q 031942 72 EPLIQLNEILQRAPGVFGARFS---GAGFRG-----------CCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 72 p~~d~l~~~a~~~~Ga~Gakis---GaG~GG-----------~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
+.++++.+.+.+ .|+-|..++ |-|-.+ -+..+++++.++++++.|.+....
T Consensus 35 ~k~e~V~~aL~~-~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~t 99 (119)
T 2cz4_A 35 LLEKRLVEEVKR-LGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFP 99 (119)
T ss_dssp GGHHHHHHHHHH-TTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh-CCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 357888888887 788776544 444211 466778888899999999965543
No 30
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=61.82 E-value=19 Score=24.11 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhCCCCeeEEE---cCCCC-cce------------------eeeeeccccHHHHHHHHHHHHHh
Q 031942 73 PLIQLNEILQRAPGVFGARF---SGAGF-RGC------------------CLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~Gaki---sGaG~-GG~------------------vial~~~~~~~~~~~~l~~~y~~ 123 (150)
.++++.+...+ .|+-|..+ .|-|- .|. +..+++++.++++++.|.+..+.
T Consensus 14 ~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~t 85 (119)
T 2j9c_A 14 KLEIVKKALSD-AGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENART 85 (119)
T ss_dssp GHHHHHHHHHH-TTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 36778888887 78877644 33331 121 67888888999999999987765
No 31
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=58.81 E-value=27 Score=23.12 Aligned_cols=50 Identities=14% Similarity=0.012 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhCCCCeeEEE---cCCCC--cc-----------------eeeeeeccccHHHHHHHHHHHHHh
Q 031942 73 PLIQLNEILQRAPGVFGARF---SGAGF--RG-----------------CCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~Gaki---sGaG~--GG-----------------~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
.++.+.+...+ .|+-|..+ .|-|- |. .+..+|+++.++.+++.|.+..+.
T Consensus 12 ~~~~V~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 83 (116)
T 1vfj_A 12 KLNEVLKALFQ-AEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAART 83 (116)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHh-CCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 36778787777 78766643 34442 11 588889999999999999987655
No 32
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=56.14 E-value=40 Score=22.12 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhCCCCeeEEE---cCCCC--cc-----------------eeeeeeccccHHHHHHHHHHHHHh
Q 031942 73 PLIQLNEILQRAPGVFGARF---SGAGF--RG-----------------CCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~Gaki---sGaG~--GG-----------------~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
.++.+.+...+ .|+-|..+ .|-|- |. -+..+++++.++++++.|.+..+.
T Consensus 12 ~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 2eg2_A 12 KLDEVKDALVE-IGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQT 83 (112)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 36778888777 78866643 33332 11 477888888999999999987765
No 33
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=53.16 E-value=18 Score=24.42 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHhhCCCCeeEEE----cCCCCcc----------------eeeeeeccccHHHHHHHHHHH
Q 031942 71 SEPLIQLNEILQRAPGVFGARF----SGAGFRG----------------CCLALVDADRAEEAASYVRSE 120 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~Ga~Gaki----sGaG~GG----------------~vial~~~~~~~~~~~~l~~~ 120 (150)
-|-+++|++.+++ .|+-|+.+ .|-|..| .+.++.+++.++.+.+.+.+.
T Consensus 29 ~pL~~~Iv~~~~~-~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~ 97 (114)
T 1o51_A 29 KPLFEYLVKRAYE-LGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNI 97 (114)
T ss_dssp EEHHHHHHHHHHH-TTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTC
T ss_pred eEHHHHHHHHHHH-CCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHH
Confidence 4567899999998 89988876 4445444 233333445566666666543
No 34
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=51.30 E-value=34 Score=23.68 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhCCCCeeEEE---cCCCCc-c-------------------eeeeeeccccHHHHHHHHHHHHHh
Q 031942 73 PLIQLNEILQRAPGVFGARF---SGAGFR-G-------------------CCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~Gaki---sGaG~G-G-------------------~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
.++.+.+...+ .|+.|..+ .|-|-- | -+..+|+++.++++++.|.+..+.
T Consensus 24 k~~~V~~AL~~-~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~~~t 96 (135)
T 2o66_A 24 RIQQVSSALLK-IGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGART 96 (135)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 36778888877 78877644 444431 1 377788888999999999988765
No 35
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=50.19 E-value=52 Score=21.73 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCCeeE---EEcCCCCcc-------------------eeeeeeccccHHHHHHHHHHHHHh
Q 031942 73 PLIQLNEILQRAPGVFGA---RFSGAGFRG-------------------CCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~Ga---kisGaG~GG-------------------~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
.++.+.+...+ .|+-|. ...|-|--+ -+..+|+++.++++++.|.+..+.
T Consensus 16 ~~~~v~~AL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 87 (116)
T 2ns1_B 16 KLEDVREALSS-IGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYT 87 (116)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 36777777777 787665 344555211 455677888899999999988765
No 36
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=47.74 E-value=57 Score=21.44 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhCCCCeeEEE---cCCCC--cc-----------------eeeeeeccccHHHHHHHHHHHHHh
Q 031942 73 PLIQLNEILQRAPGVFGARF---SGAGF--RG-----------------CCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~Gaki---sGaG~--GG-----------------~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
.++.+.+...+ .|+.|..+ .|-|- |. -+..+++++.++++++.|.+..+.
T Consensus 14 ~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~t 85 (114)
T 2gw8_A 14 KLDDVREALTE-IGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVARS 85 (114)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhCC
Confidence 36778888877 78866644 33332 11 455667788899999999987765
No 37
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=47.30 E-value=56 Score=21.39 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCCCeeEEE---cCCCC-cc------------------eeeeeeccccHHHHHHHHHHHHHh
Q 031942 73 PLIQLNEILQRAPGVFGARF---SGAGF-RG------------------CCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~Gaki---sGaG~-GG------------------~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
.++.+.+...+ .|+-|..+ .|-|- .| -+..+|+++.++++++.|.+..+.
T Consensus 14 ~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~t 85 (114)
T 3bzq_A 14 TLDDVKTSLED-AGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAART 85 (114)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 36777777777 78766543 34342 12 377788888999999999987765
No 38
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=45.51 E-value=64 Score=21.66 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhCCCCeeEEE---cCCCC-cc------------------eeeeeeccccHHHHHHHHHHHHHh
Q 031942 73 PLIQLNEILQRAPGVFGARF---SGAGF-RG------------------CCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~Gaki---sGaG~-GG------------------~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
.++++.++..+ .|+.|..+ .|-|- +| -+..+|+++.++++++.|.+.-+.
T Consensus 12 kl~~Vk~AL~~-~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~a~T 83 (118)
T 3t9z_A 12 KLECVKKALEE-RGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSSART 83 (118)
T ss_dssp GHHHHHHHHHH-TTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHHhcC
Confidence 36788888777 78877654 35442 12 256777888999999999987554
No 39
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=43.89 E-value=67 Score=21.13 Aligned_cols=54 Identities=9% Similarity=-0.035 Sum_probs=37.2
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHH-HHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHhH
Q 031942 8 VEEEVYEAHKNELEPTLAKRAEHYF-TENRR-VAKGLEAWKSGNSQDFGKLISASGLSSI 65 (150)
Q Consensus 8 ~~~~~l~~~~~~l~~~~~~r~~~~v-~e~~r-~~~~~~aL~~~d~~~~g~lm~~s~~~lr 65 (150)
++.+.|...+..+.++....+...+ .++.. +..+..++..+|++.+.++. | .++
T Consensus 12 lD~~~l~~l~~~~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~d~~~~~~~a---H-~LK 67 (125)
T 2a0b_A 12 LDIPMLEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEG---H-KIK 67 (125)
T ss_dssp SCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH---H-HHH
T ss_pred CCHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCHHHHHHHH---H-HHH
Confidence 4566677777778887776666554 44444 45667888999999877777 7 444
No 40
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=43.85 E-value=67 Score=21.57 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhCCCCeeEEE---cCCCC--cc-----------------eeeeeeccccHHHHHHHHHHHHHh
Q 031942 73 PLIQLNEILQRAPGVFGARF---SGAGF--RG-----------------CCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~Gaki---sGaG~--GG-----------------~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
.++++.++..+ .|+.|..+ .|-|- |. -+...|+++.++++++.|.+.-+.
T Consensus 12 kl~~Vk~AL~~-~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~a~T 83 (119)
T 3ncq_A 12 KFPEVKAALEE-RGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAFT 83 (119)
T ss_dssp THHHHHHHHHH-TTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 46788888777 78877644 45553 21 256777888999999999986554
No 41
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=43.16 E-value=1.1e+02 Score=26.11 Aligned_cols=109 Identities=9% Similarity=0.029 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCc
Q 031942 21 EPTLAKRAEHYFTENR-RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFR 98 (150)
Q Consensus 21 ~~~~~~r~~~~v~e~~-r~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~G 98 (150)
++.+.+|..+.+.... ++.+.+...+...+..+++...+......+.++. .+++....+...+ .|. .-+++++..
T Consensus 89 D~~l~~r~~~~l~~~i~~~~~e~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~dii~~fr~L~~-~G~--iEiit~~~t 165 (540)
T 3p0b_A 89 DARIKEGFWAYAKDRLERAQGDYQRYRGTALEASARHQVAFWELTLDHFQRLSGDLVAAFRKAEE-GGQ--VELITSNAT 165 (540)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-HTS--EEEEEECTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-CCC--EEEEcCCch
Confidence 3445556655554332 2333344344444667777666655555555554 6666565555555 576 566777777
Q ss_pred ceeeeee-ccccHHHHHHHHHHHHHhhChhhhhhcCCCceEE
Q 031942 99 GCCLALV-DADRAEEAASYVRSEYFELQPELASQLNADSAVL 139 (150)
Q Consensus 99 G~vial~-~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~ 139 (150)
=.++-|. ++++...-++.-.+.|++. ||.+|..+
T Consensus 166 H~~lPLl~~~e~~~~QI~~g~~~~~~~-------FG~~P~G~ 200 (540)
T 3p0b_A 166 HGYSPLLGYDEALWAQIKTGVSTYRRH-------FAKDPTGF 200 (540)
T ss_dssp CBCGGGCSCHHHHHHHHHHHHHHHHHH-------HSSCCCBE
T ss_pred hhHHhcCCCHHHHHHHHHHHHHHHHHH-------hCCCCCEE
Confidence 7788777 3444333333334466665 78888754
No 42
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=38.92 E-value=34 Score=23.61 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=41.2
Q ss_pred CcCCCCHHHHHHHhccCCHHHH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhHhhcC
Q 031942 4 RLCNVEEEVYEAHKNELEPTLA-KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGL-SSIYNYE 69 (150)
Q Consensus 4 ~lr~~~~~~l~~~~~~l~~~~~-~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~~s~~-~lr~~~~ 69 (150)
-||+.+.+||.+-+.++-.+++ .|..+............. ...|+..+--++++-+. .||..|.
T Consensus 10 ELR~~s~eEL~~~L~eLK~ELf~LRfq~atgqlen~~rIr~--vRRdIARi~Tvl~er~~~~lr~~yk 75 (124)
T 3iz5_c 10 ELWNKSKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHD--IRKSIARVLTVINAKQRAQLRLFYK 75 (124)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4789999999999988887776 477777654333322221 23456666666665443 7776663
No 43
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=36.81 E-value=33 Score=18.03 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=8.4
Q ss_pred cHHHHHHHHHHHH
Q 031942 109 RAEEAASYVRSEY 121 (150)
Q Consensus 109 ~~~~~~~~l~~~y 121 (150)
.++.+.+.|.++.
T Consensus 22 aaeayakriaeam 34 (37)
T 2i9o_A 22 AAEAYAKRIAEAM 34 (37)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4677777776643
No 44
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=36.13 E-value=88 Score=20.31 Aligned_cols=50 Identities=26% Similarity=0.274 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhCCCCeeEEE---cCCCC-cc------------------eeeeeeccccHHHHHHHHHHHHHh
Q 031942 73 PLIQLNEILQRAPGVFGARF---SGAGF-RG------------------CCLALVDADRAEEAASYVRSEYFE 123 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~Gaki---sGaG~-GG------------------~vial~~~~~~~~~~~~l~~~y~~ 123 (150)
.++.+.+...+ .|+-|..+ .|-|- +| -+..+++++.++++++.|.+..+.
T Consensus 12 ~~~~v~~aL~~-~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~t 83 (112)
T 1hwu_A 12 KLDEVRESLAE-VGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAART 83 (112)
T ss_dssp GHHHHHHHHHH-TTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 36778787777 78866644 34442 12 456677788899999999987765
No 45
>3n98_A Alpha-amylase, GH57 family; GH57 family member, branching enzyme, transferase; HET: BGC PG4; 1.87A {Thermococcus kodakarensis} PDB: 3n92_A* 3n8t_A*
Probab=32.83 E-value=2.4e+02 Score=24.26 Aligned_cols=106 Identities=10% Similarity=0.074 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC-ChHHHHHHHHHhhCCCCeeEEEcCCCCcc
Q 031942 22 PTLAKRAEHYFTENRR-VAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRG 99 (150)
Q Consensus 22 ~~~~~r~~~~v~e~~r-~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v-~p~~d~l~~~a~~~~Ga~GakisGaG~GG 99 (150)
+.+..|..+.+..... +.+.+. +..++..+++...+......+.++- .+++....+...+ .|. .-+++++..=
T Consensus 71 ~~l~~r~~~~l~~~i~~~~~e~~--r~~~~~~~a~~~~~~~~~~~~~~~~~~~dii~~fr~L~~-~G~--iElit~~~tH 145 (562)
T 3n98_A 71 EYMKKAFEEYMERKLKAMEEDLK--SGKYDEKAVSYMLNYFRKVYDYWKAINGDIIGKLRELQD-QGY--VEVITSAATH 145 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-TTS--EEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-CCC--EEEEcCCchh
Confidence 4445555555443322 222222 2235666777666655545555554 6766666666666 687 5666777777
Q ss_pred eeeeeec-cccHHHHHHHHHHHHHhhChhhhhhcCCCceEE
Q 031942 100 CCLALVD-ADRAEEAASYVRSEYFELQPELASQLNADSAVL 139 (150)
Q Consensus 100 ~vial~~-~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~ 139 (150)
.++-|.. ++....-++.-.+.|+++ ||.+|..+
T Consensus 146 ~~lPLl~~~e~~~~QI~~g~~~~~~~-------FG~~P~G~ 179 (562)
T 3n98_A 146 GYLPLLGRDEAIRAQIANGVATYEKH-------FGMKPKGI 179 (562)
T ss_dssp BCGGGCSCHHHHHHHHHHHHHHHHHH-------HSSCCSBE
T ss_pred hHhhcCCCHHHHHHHHHHHHHHHHHH-------cCCCCCEE
Confidence 8888875 344433333333466665 78888744
No 46
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=31.23 E-value=28 Score=22.44 Aligned_cols=53 Identities=13% Similarity=0.342 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCCCh-HHHHHHHHHhhCCCC-eeEEE
Q 031942 39 AKGLEAWKSGNSQDFGKLISASGLSSIYNYECSE-PLIQLNEILQRAPGV-FGARF 92 (150)
Q Consensus 39 ~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v~p-~~d~l~~~a~~~~Ga-~Gaki 92 (150)
..+..+|+..++..+|.++..+...|..--...+ .+++|.+...+ .|- +|..+
T Consensus 21 vRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~-~GL~~gm~l 75 (86)
T 3k4g_A 21 VRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLAS-RGLSLGMRL 75 (86)
T ss_dssp HHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHT-TTCCSSCCE
T ss_pred HHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHH-cCCCcCCCc
Confidence 3566788889999999999988877764323344 57888888876 774 44444
No 47
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=29.69 E-value=40 Score=23.21 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=38.8
Q ss_pred CcCCCCHHHHHHHhccCCHHHH-HHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHhHhhc
Q 031942 4 RLCNVEEEVYEAHKNELEPTLA-KRAEHYFT-ENRRVAKGLEAWKSGNSQDFGKLISASG-LSSIYNY 68 (150)
Q Consensus 4 ~lr~~~~~~l~~~~~~l~~~~~-~r~~~~v~-e~~r~~~~~~aL~~~d~~~~g~lm~~s~-~~lr~~~ 68 (150)
-||+.+.+||.+-+.++-.+++ .|..+... .......... ...|+..+--++++-+ ..+|..|
T Consensus 9 ELR~~s~eEL~~~L~eLK~ELf~LRfq~atggqlen~~rIr~--vRRdIARi~Tvl~er~~~~lr~~y 74 (124)
T 4a17_U 9 KLRTQTEEQLVGELGKLQTELSQLRIAKIAGGTANKLGRIGI--VRKAIAKYLTIINEKRRQAVKDQF 74 (124)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999988887776 47777665 2222221111 1245666666666544 3677655
No 48
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=28.55 E-value=8.5 Score=22.54 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=10.3
Q ss_pred CCCCcceeeeeecc
Q 031942 94 GAGFRGCCLALVDA 107 (150)
Q Consensus 94 GaG~GG~vial~~~ 107 (150)
|+|+||-++-+|..
T Consensus 30 ggggggelmklcee 43 (62)
T 2i7u_A 30 GGGGGGELMKLCEE 43 (62)
T ss_dssp SCSSSCHHHHHHHH
T ss_pred CCCchHHHHHHHHH
Confidence 46777888888843
No 49
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=25.32 E-value=73 Score=21.15 Aligned_cols=50 Identities=26% Similarity=0.387 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCCeeE---EEcCCC----C-cc-----------eeeeee-ccccHHHHHHHHHHHHHh
Q 031942 73 PLIQLNEILQRAPGVFGA---RFSGAG----F-RG-----------CCLALV-DADRAEEAASYVRSEYFE 123 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~Ga---kisGaG----~-GG-----------~vial~-~~~~~~~~~~~l~~~y~~ 123 (150)
.++++.++..+ .|+.|- ...|-| + |+ -+..++ +++.++++++.+.+.+.+
T Consensus 17 kl~~V~~aL~~-~Gv~G~TV~~v~G~G~q~~~~~~~~~~~~~~~kvkieivv~~de~vd~vv~~I~~~~~t 86 (111)
T 3dfe_A 17 LLKKVAKIIEE-AGATGYTVVDTGGKGSRNVRSTGKPNTSDTDSNVKFEVLTENREMAEKIADQVAIKFFT 86 (111)
T ss_dssp GHHHHHHHHHH-HTCSCCEEEEEBC------------------CEEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-CCCCcEEEEecEeecCCCCCcCceEEEeccCCceEEEEEECCHHHHHHHHHHHHHHhhC
Confidence 46777777766 677664 334555 1 12 125566 477899999999776665
No 50
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=24.14 E-value=1.5e+02 Score=19.25 Aligned_cols=60 Identities=5% Similarity=-0.098 Sum_probs=34.6
Q ss_pred CCCHHHHHHHh-ccCCHHHHHHHHHHHHHHHH---HHHHHHHHHcCC----HHHHHHHHHHHHHHhHh
Q 031942 7 NVEEEVYEAHK-NELEPTLAKRAEHYFTENRR---VAKGLEAWKSGN----SQDFGKLISASGLSSIY 66 (150)
Q Consensus 7 ~~~~~~l~~~~-~~l~~~~~~r~~~~v~e~~r---~~~~~~aL~~~d----~~~~g~lm~~s~~~lr~ 66 (150)
.+.+.++..|+ ..|+++...++.....+... +..+.+.|...+ +..|-.++..+...+.+
T Consensus 27 ~I~p~~IL~~L~~~L~~~d~E~I~a~~~~~G~~~aa~~LL~~L~r~~~~gWf~~fl~AL~~~g~~~s~ 94 (100)
T 2lwd_A 27 RIIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERNKFSE 94 (100)
T ss_dssp HCCTTTTHHHHTTTSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCTHHHHHHHHHHHHHTCSHHH
T ss_pred hcCHHHHHHHHHHHCCHHHHHHHHHHHHccChHHHHHHHHHHHHhcCcCCcHHHHHHHHHHcCCchHH
Confidence 35666777777 47787777777666654333 444556554322 44666666555443433
No 51
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=23.86 E-value=2.2e+02 Score=23.41 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=37.7
Q ss_pred CCcceeeeeeccccHHHHHHHHHHHHHhh--------Ch--------------hhhhhcCCCceEEEeecCCCee
Q 031942 96 GFRGCCLALVDADRAEEAASYVRSEYFEL--------QP--------------ELASQLNADSAVLICKPGDCAR 148 (150)
Q Consensus 96 G~GG~vial~~~~~~~~~~~~l~~~y~~~--------~~--------------~~~~~~~~~~~~~~~~p~~Ga~ 148 (150)
.-+|+++-|.+..+++++.++|.+.+.+. +| .|..++|..+-.++-.|++-+.
T Consensus 230 ~~~GAlW~Ifr~~D~~klr~~L~~~~~e~~~~~~~~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~Geavf 304 (392)
T 2ypd_A 230 EIPGALWHIYAGKDVDKIREFLQKISKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIV 304 (392)
T ss_dssp CCEEEEEEEECGGGHHHHHHHHHHHHHHHC------CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEE
T ss_pred CCCCceeeeeCHhhHHHHHHHHHHHHHhhCCCccCCCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEE
Confidence 35689999999999999999999876541 12 3445567766666666665544
No 52
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=22.60 E-value=68 Score=21.96 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=5.4
Q ss_pred ChHHHHHHHHH
Q 031942 71 SEPLIQLNEIL 81 (150)
Q Consensus 71 ~p~~d~l~~~a 81 (150)
.|.+++|.+..
T Consensus 96 ~prl~eL~~li 106 (126)
T 3h3m_A 96 LPQLARLSDLL 106 (126)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 45555554443
No 53
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=22.34 E-value=11 Score=31.09 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.7
Q ss_pred eeEEEcCCCCcceeee
Q 031942 88 FGARFSGAGFRGCCLA 103 (150)
Q Consensus 88 ~GakisGaG~GG~via 103 (150)
|=.=|.|||.+||++|
T Consensus 18 yD~IIVGsG~aG~v~A 33 (526)
T 3t37_A 18 CDIVIVGGGSAGSLLA 33 (526)
T ss_dssp EEEEEECCSHHHHHHH
T ss_pred eeEEEECccHHHHHHH
Confidence 5568999999999987
No 54
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=21.68 E-value=1.4e+02 Score=20.05 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 031942 20 LEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLIS 58 (150)
Q Consensus 20 l~~~~~~r~~~~v~e~~r~~~~~~aL~~~d~~~~g~lm~ 58 (150)
+++..+.+...++..+..-...+..|....++.++++|.
T Consensus 56 l~~~~~~~~~~lL~~IL~nDaeIr~Ll~~rl~~L~~li~ 94 (122)
T 3a7m_A 56 ITRSIQDMVAGYIKQTLDNEQLLKGLLQQRLDELSSLIG 94 (122)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444445555555555555554
No 55
>2jr3_A Pelovaterin; beta-defensin like peptide, chinese SOFT-shelled turtle eggshell, antibacterial peptide, eggshell matrix; NMR {Pelodiscus sinensis}
Probab=21.65 E-value=29 Score=18.74 Aligned_cols=8 Identities=25% Similarity=0.771 Sum_probs=6.2
Q ss_pred CCCCccee
Q 031942 94 GAGFRGCC 101 (150)
Q Consensus 94 GaG~GG~v 101 (150)
.+|||+|+
T Consensus 10 sggwgpcl 17 (42)
T 2jr3_A 10 SGGWGPCL 17 (42)
T ss_dssp TSSBCSCE
T ss_pred CCCcccch
Confidence 46899986
No 56
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=21.46 E-value=1.8e+02 Score=19.09 Aligned_cols=57 Identities=12% Similarity=-0.023 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHHH-H-HHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--ChHHHHHHHHH
Q 031942 21 EPTLAKRAEHYFTENR-R-VAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--SEPLIQLNEIL 81 (150)
Q Consensus 21 ~~~~~~r~~~~v~e~~-r-~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--~p~~d~l~~~a 81 (150)
.+++.++...++-+.. . ......++..+|++.+..+. | .++-.... .|.+..+....
T Consensus 18 ~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~d~~~l~~~a---H-kLkGaa~~~Ga~~L~~~~~~L 78 (119)
T 3myf_A 18 KSNLALEMLKMLLDSLPETVEKIQTALGQNDQATMLSTI---H-KLHGASCYCGVPTTQRLCQEI 78 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH---H-HHHHHHTTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHH---H-HHHHHHHHcCHHHHHHHHHHH
Confidence 4667777776664433 3 34566788899999999998 6 45544443 77765554444
No 57
>2o7a_A Lysozyme; protein folding, protein stability, circular permutant, hydrolase; HET: SME; 0.84A {Enterobacteria phage T4}
Probab=21.05 E-value=2e+02 Score=19.42 Aligned_cols=59 Identities=7% Similarity=0.049 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCCCh-HHHHHHHHHhh
Q 031942 20 LEPTLAKRAEHYFTENRRV-----AKGLEAWKSGNSQDFGKLISASGLSSIYNYECSE-PLIQLNEILQR 83 (150)
Q Consensus 20 l~~~~~~r~~~~v~e~~r~-----~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v~p-~~d~l~~~a~~ 83 (150)
+++..+.-+..++.+.... ..+..+|..+||.....-|..| +.. .+ +| ....+.+..+.
T Consensus 33 l~~~r~~ALvsfaFNlG~g~l~~Fstllk~lnagD~~~Aa~el~~S---~Wa-~Q-tp~Ra~r~~~~m~~ 97 (124)
T 2o7a_A 33 LDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKS---RWY-NQ-TPNRAKRVITTFRT 97 (124)
T ss_dssp SCHHHHHHHHHHHHHHCHHHHHTCHHHHHHHHTTCHHHHHHHHTTS---HHH-HH-SHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCchhhcchhHHHHHHHCcCHHHHHHHHHhC---hhh-hh-CcHHHHHHHHHHHC
Confidence 4444444455666655432 3577889999999888877443 221 11 45 34556666653
No 58
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=20.45 E-value=1.6e+02 Score=19.81 Aligned_cols=66 Identities=8% Similarity=-0.142 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhCCCCeeEE---EcCCCC--cc--------------eeeeeeccccHHHHHHHHHHHHHhhChhhhhhcC
Q 031942 73 PLIQLNEILQRAPGVFGAR---FSGAGF--RG--------------CCLALVDADRAEEAASYVRSEYFELQPELASQLN 133 (150)
Q Consensus 73 ~~d~l~~~a~~~~Ga~Gak---isGaG~--GG--------------~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 133 (150)
.+|++.+...+.+|+-|.. +.|-|. |- -+-.+++++.+++++++|.+.+..- +
T Consensus 34 kld~V~daL~~~~gi~G~TvseV~G~Grqkg~~S~~E~yrG~epKvkiEivv~d~~ve~vv~aI~~~a~tg--------~ 105 (120)
T 3ce8_A 34 IKDDIVDTLIELEFLSGFSLGNICGFSREHSHFNIKEQVEGYREFCKFEIMHPAAQQAALLTALALVCKHN--------P 105 (120)
T ss_dssp GHHHHHHHHTTCTTCCCCEEEEEEEEECC-----------EEEEEEEEEEEEEGGGHHHHHHHHHHHTTTS--------C
T ss_pred HHHHHHHHHHhCCCCCcEEEEeeEEeCCCCCCCCceeEEecCCceEEEEEEECHHHHHHHHHHHHHHcCCC--------C
Confidence 3688888887733776653 334442 22 2446677888999999999986542 3
Q ss_pred CCceEEEeecCCCee
Q 031942 134 ADSAVLICKPGDCAR 148 (150)
Q Consensus 134 ~~~~~~~~~p~~Ga~ 148 (150)
+ .+|++-..+-.|
T Consensus 106 I--KIfV~pVe~~vR 118 (120)
T 3ce8_A 106 C--RYWIMPIYQNGT 118 (120)
T ss_dssp C--EEEEEECSCCCC
T ss_pred E--EEEEEEhHHeEE
Confidence 3 677665555444
No 59
>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural genomics, PSI-2; 2.46A {Porphyromonas gingivalis}
Probab=20.39 E-value=1.7e+02 Score=23.10 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHhhCCCCeeEEEcCCCCcceeeeeec
Q 031942 71 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVD 106 (150)
Q Consensus 71 ~p~~d~l~~~a~~~~Ga~GakisGaG~GG~vial~~ 106 (150)
++.+|.|.+.|.+ .+..|+|+ -||+-+..
T Consensus 123 tqGLDgL~eR~~~-y~~~GAKW------R~Vlki~~ 151 (296)
T 2iqt_A 123 FPELGKLCEEAVG-YHVFGTKM------RSVIKQAN 151 (296)
T ss_dssp CTTHHHHHHHHHH-TTCCEEEE------EEEECSCC
T ss_pred CCChhHHHHHHHH-hccCCCee------eeeeecCc
Confidence 7899999999998 89999998 67887764
No 60
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=20.27 E-value=2e+02 Score=19.09 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHH-H-HHHHHHHHHcCCHHHHHHHHHHHHHHhHhhcCC--ChHHHHHHHHH
Q 031942 21 EPTLAKRAEHYFTENR-R-VAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC--SEPLIQLNEIL 81 (150)
Q Consensus 21 ~~~~~~r~~~~v~e~~-r-~~~~~~aL~~~d~~~~g~lm~~s~~~lr~~~~v--~p~~d~l~~~a 81 (150)
.+++.++...++-+.. . ......++..+|++.+..+. | .++-.... .|.+..+....
T Consensus 27 ~~~La~elL~~fl~~~~~~~~~l~~a~~~~d~~~l~~~a---H-kLkGaa~~~Ga~~L~~~c~~L 87 (123)
T 3iqt_A 27 KTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLI---H-KLHGSCGYSGVPRMKNLCQLI 87 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHH---H-HHHHHHTTSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH---H-HHHHHHHHcCHHHHHHHHHHH
Confidence 4666667766664433 3 34455788889999999998 6 45533433 77765554444
Done!