RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 031942
(150 letters)
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 247 bits (631), Expect = 6e-82
Identities = 110/149 (73%), Positives = 125/149 (83%), Gaps = 1/149 (0%)
Query: 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGL 62
P LCNVE EVYEAHK +LE LA+RAEHYF+EN RV KG+EAW SGN ++FGKLISASGL
Sbjct: 275 PLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGL 334
Query: 63 SSIYNYEC-SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 121
SSI NYEC EPLIQL EIL +APGV+GARFSGAGFRGCC+A VDA+ AEEAAS+VR EY
Sbjct: 335 SSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEY 394
Query: 122 FELQPELASQLNADSAVLICKPGDCARVI 150
+ QPELAS +N D VLIC+ GDCARV+
Sbjct: 395 EKAQPELASNINGDKPVLICEAGDCARVL 423
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 100 bits (252), Expect = 4e-26
Identities = 53/146 (36%), Positives = 77/146 (52%), Gaps = 10/146 (6%)
Query: 8 VEEEVYEAHKNELE--PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSI 65
V +E + A + E+E P +A+RA H TEN+RV + +A +SG+ +FG+L++ S S
Sbjct: 251 VTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLR 310
Query: 66 YNYECS-EPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFEL 124
+YE + L L EI A G +GAR +GAGF GC +ALV D E A V EY ++
Sbjct: 311 DDYEVTCPELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKV 370
Query: 125 QPELASQLNADSAVLICKPGDCARVI 150
A A + + A V
Sbjct: 371 TGLKA-------AFYVVEASQGAGVC 389
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 88.4 bits (220), Expect = 2e-21
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 5 LCNVEEEVYEAHKNELE-PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLS 63
L + EE ++ + ++ TL KRA H TEN+R K ++A K+G+ + FG+L++AS +S
Sbjct: 247 LGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVS 306
Query: 64 SIYNYECSEP-LIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 122
+YE + L L E + GV GAR +GAGF GC +A+V D+ E V Y
Sbjct: 307 LRDDYEVTGLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYE 366
Query: 123 E 123
E
Sbjct: 367 E 367
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 86.8 bits (215), Expect = 6e-21
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 7 NVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIY 66
N Y A ++ P + +RA+H +EN RV K ++A K + + FG L++ S S
Sbjct: 249 NEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDD 308
Query: 67 NYECSEPLI-QLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQ 125
+YEC+ P I +L G G+R +GAGF GC + LV + ++ V +Y +
Sbjct: 309 DYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPKK- 367
Query: 126 PELASQLNADSAVLICKPG 144
+ L V++ KPG
Sbjct: 368 ----TGLELTFYVIVSKPG 382
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 79.3 bits (196), Expect = 3e-18
Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 11 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC 70
EV E ++L P L KRA + EN RV K +A K G+ + G+L++ S NYE
Sbjct: 218 EVTEEDLSKLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYEV 277
Query: 71 SEPLIQLNEILQRAP--GVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 121
S +L+ ++ A G +GAR +GAGF G +ALVD + E + EY
Sbjct: 278 SCE--ELDFFVEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEY 328
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 70.7 bits (174), Expect = 4e-15
Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 9/148 (6%)
Query: 5 LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSS 64
L +V E + A EL+P +AKRA H TEN R + A +G+ + G+L++ S S
Sbjct: 242 LRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASM 301
Query: 65 IYNYECSEPLIQ-LNEILQRAPGVF-GARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 122
++E + P I L EI++ G G R +G GF GC +ALV + E V +Y
Sbjct: 302 RDDFEITVPQIDTLVEIVKAVIGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYE 361
Query: 123 ELQPELASQLNADSAVLICKPGDCARVI 150
+ L V CK A
Sbjct: 362 A-----KTGLKETFYV--CKASQGAGQC 382
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 68.3 bits (167), Expect = 2e-14
Identities = 41/101 (40%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 21 EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECSEPLIQL-NE 79
+P A+RA H TEN+RV A + G+L++AS S ++E + I L +
Sbjct: 240 DPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDFEITTERIDLIAD 299
Query: 80 ILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 120
RA G GAR +G GF GC +ALV ADRAE+ A VR
Sbjct: 300 SAVRA-GALGARMTGGGFGGCVIALVPADRAEDVADTVRRA 339
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 57.0 bits (138), Expect = 2e-10
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 24 LAKRAEHYFTENRRVAKGLEAWKSGNS-----QDFGKLISASGLSSIYNYECSEPLIQLN 78
L +RA H ++E +RV + S S + G L++ S S YECS P +L
Sbjct: 361 LHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCP--ELE 418
Query: 79 EILQ--RAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 122
E+++ R G GAR +GAG+ GC +ALV + ++ +++
Sbjct: 419 ELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFY 464
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 39.8 bits (93), Expect = 4e-05
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 42 LEAWKSGNSQDFGKLISASGLSSI---YNYECSEPLIQLNEILQRAPGVFGARFSGAGFR 98
LEA + G+ + G+L++ + LS Y S L +L E L+ G GA+ SG+G
Sbjct: 2 LEALREGDLELLGELLNENALSLEPLLYLGILSPELDELLEELREL-GALGAKLSGSGGG 60
Query: 99 GCCLALV-DADRAEEAASYVRSEY 121
AL D + AEE A +R Y
Sbjct: 61 PTVFALFKDEEDAEEVAEALREAY 84
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 34.6 bits (80), Expect = 0.010
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 83 RAPGVFGARFSGAGFRGCCLALVDADRAEEAA 114
R G GA+ +GAG GC +AL ++ E A
Sbjct: 245 RTAGALGAKITGAGGGGCMVALAAPEKQSEVA 276
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 33.1 bits (76), Expect = 0.032
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 29 EHYFTENRRVAKGLE-AWKSGNSQDFGKLIS-ASGLSS---IYNYECSEPLIQLNEILQR 83
+ + + E A ++G+ ++ G+L++ GL + E L +L E +
Sbjct: 203 DPILDAIGELVQEAEAALQTGDFEELGELMNINQGLLKALGVSTPE----LDELVEAARS 258
Query: 84 APGVFGARFSGAGFRGCCLALV-DADRAEE 112
G GA+ +GAG GC +AL + + AE
Sbjct: 259 L-GALGAKLTGAGGGGCIIALAKNEEIAET 287
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 32.1 bits (73), Expect = 0.081
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 71 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 121
+ L ++E++ GV G R G GF GC + L+ + + ++VR ++
Sbjct: 384 TPELDFIHELINEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKF 434
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 30.6 bits (69), Expect = 0.24
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 12 VYEAHK-NELEPTLAKR-AEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS-GLSSIYNY 68
V + K E +PT R E+Y N V++ EA + GN G+L++A+ L
Sbjct: 202 VGDVRKLKENQPTWFNRLLENY---NACVSEAKEALQKGNLFRVGELMNANHDLCQKLTV 258
Query: 69 ECSEPLIQLNEILQ--RAPGVFGARFSGAGFRGCCLALVDADRAEEAA 114
C E L+ I+Q R G GA+ SG G G +AL A + A
Sbjct: 259 SCRE----LDSIVQTCRTYGALGAKMSGTGRGGLVVALA-ASEDQRDA 301
>gnl|CDD|235558 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 676
Score = 29.3 bits (66), Expect = 0.83
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 89 GARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSA 137
++ SGAG+ G L D R + + + + Q A+ LN+D++
Sbjct: 44 ASQQSGAGYIGTGTTLADVRR-------IYNSFLDTQLRTATSLNSDAS 85
>gnl|CDD|227132 COG4795, PulJ, Type II secretory pathway, component PulJ
[Intracellular trafficking and secretion].
Length = 194
Score = 27.8 bits (62), Expect = 1.8
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 56 LISASGLSSIY-NYECSEPLIQLNEILQRAPGVFGARFSGAGFRG 99
L++ L S + + SE +Q LQRA + AGFR
Sbjct: 26 LLAFRFLDSAQRSNQASEARLQREAELQRAMALLERDLRRAGFRR 70
>gnl|CDD|236221 PRK08291, PRK08291, ectoine utilization protein EutC; Validated.
Length = 330
Score = 27.6 bits (62), Expect = 2.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 16 HKNELEPTLAKRAEHYF 32
HKNE+ P + A+ Y
Sbjct: 232 HKNEIAPAVFAAADLYV 248
>gnl|CDD|216430 pfam01315, Ald_Xan_dh_C, Aldehyde oxidase and xanthine
dehydrogenase, a/b hammerhead domain.
Length = 111
Score = 26.4 bits (59), Expect = 3.3
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 97 FRGCCLALVDAD---RAEEAASYVRSEYFELQ 125
F G +A V AD A +AA V+ EY EL
Sbjct: 80 FVGQPIAAVVADDEETARDAAELVKVEYEELP 111
>gnl|CDD|237765 PRK14608, PRK14608, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 290
Score = 26.7 bits (60), Expect = 4.7
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 79 EILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAA 114
L+ PG AR SG+G C AL + A EAA
Sbjct: 238 AALRAQPGALLARMSGSG--ATCFALFADEAAAEAA 271
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase. This model represents
mevalonate kinase, the third step in the mevalonate
pathway of isopentanyl pyrophosphate (IPP) biosynthesis.
IPP is a common intermediate for a number of pathways
including cholesterol biosynthesis. This model covers
enzymes from eukaryotes, archaea and bacteria. The
related enzyme from the same pathway, phosphmevalonate
kinase, serves as an outgroup for this clade. Paracoccus
exhibits two genes within the
phosphomevalonate/mevalonate kinase family, one of which
falls between trusted and noise cutoffs of this model.
The degree of divergence is high, but if the trees
created from this model are correct, the proper names of
these genes have been swapped [Central intermediary
metabolism, Other].
Length = 274
Score = 26.1 bits (58), Expect = 8.6
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 38 VAKGLEAWKSGNSQDFGKLISA--SGLSSIYNYECSEPLI-QLNEILQRAPGVFGARFSG 94
+ A + G+ + G+L++ L ++ S P + QL EI ++A G GA+ +G
Sbjct: 209 TLEAKAALEDGDVESLGELMNINQGLLKAL---GVSHPKLDQLVEIARKA-GALGAKLTG 264
Query: 95 AGFRGCCLAL 104
AG GC +AL
Sbjct: 265 AGGGGCMIAL 274
>gnl|CDD|235049 PRK02534, PRK02534, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 312
Score = 26.0 bits (58), Expect = 8.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 76 QLNEILQRAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYVR 118
+L E+L PG G SG+G C AL ++AE+A VR
Sbjct: 247 KLLELLSSLPGCLGTMMSGSG--PTCFALFESQEQAEQALEQVR 288
>gnl|CDD|237823 PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase;
Provisional.
Length = 191
Score = 25.8 bits (57), Expect = 9.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 79 EILQRAPGVFGARFSG 94
E L APGV+ AR++G
Sbjct: 74 EALNGAPGVYSARYAG 89
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,513,340
Number of extensions: 654458
Number of successful extensions: 573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 31
Length of query: 150
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 62
Effective length of database: 7,034,450
Effective search space: 436135900
Effective search space used: 436135900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)