RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031942
(150 letters)
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET:
GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Length = 399
Score = 144 bits (365), Expect = 1e-42
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGL 62
L V+ E EA ++ + +RA H E RR A+ A + G+ + FG+L+ S
Sbjct: 260 ESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHR 319
Query: 63 SSIYNYECSEP-LIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 121
S +YE S P L QL E PGV+G+R +G GF GC + L++A A A +++ Y
Sbjct: 320 SLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY 379
Query: 122 FELQPELASQLNADSAVLICKPGDCARVI 150
+ + + D A+V+
Sbjct: 380 -----------GGTATFYLSQAADGAKVL 397
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA;
2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Length = 419
Score = 142 bits (360), Expect = 9e-42
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 9/150 (6%)
Query: 3 PRLCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG 61
L + E ++A+ + + + TL KRA H EN R +A+ +GN FG+L++AS
Sbjct: 274 QSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASH 333
Query: 62 LSSIYNYECSEP-LIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSE 120
S +YE + L L E Q+ GV GAR +GAGF GC +ALV D V
Sbjct: 334 ASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQV 393
Query: 121 YFELQPELASQLNADSAVLICKPGDCARVI 150
Y E + ++ + + G + +
Sbjct: 394 YEE-------VVGYPASFYVAQIGSGSTKL 416
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national
project protein structural and functional analyses;
1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A*
1s4e_A*
Length = 350
Score = 135 bits (342), Expect = 1e-39
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 69
+EV E ++L P K + EN RV + +A K GN ++ GK+++ + NYE
Sbjct: 218 KEVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNYE 277
Query: 70 CS-EPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPEL 128
S + L E G +GAR +GAGF G +ALVD + AE + EY + P
Sbjct: 278 VSCKELDFFVERA-LKLGAYGARLTGAGFGGSAIALVDKEDAETIGEEILREYLKRFPWK 336
Query: 129 ASQLNADSAVLICKPGDCARV 149
A I +P D +
Sbjct: 337 AR-------HFIVEPSDGVGI 350
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET:
NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Length = 478
Score = 98.0 bits (244), Expect = 5e-25
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 7/146 (4%)
Query: 9 EEEVYEAHKNELEPTLAKRAEHYFTENRRV---AKGLEAWKSGNSQDFGKLISASGLSSI 65
+ + ++ L L +RA+H ++E RV K E Q G+L++ S +S
Sbjct: 333 TQILSPNTQDVLIFKLYQRAKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCR 392
Query: 66 YNYECSEP-LIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFEL 124
YECS P L QL +I R G G+R +GAG+ GC +++V AD+ + V Y++
Sbjct: 393 DMYECSCPELDQLVDIC-RKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQR 451
Query: 125 QPELASQLNADSAVLICKPGDCARVI 150
+ ++ KPG A V+
Sbjct: 452 SDGSLAPEKQ--SLFATKPGGGALVL 475
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 86.0 bits (212), Expect = 1e-20
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 12/148 (8%)
Query: 14 EAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNS-------QDFGKLISASGLSSIY 66
L +RA+H ++E+ RV K L+ S DFG+L++ S S
Sbjct: 372 TFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDK 431
Query: 67 NYECSEP-LIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA---DRAEEAASYVRSEYF 122
YECS Q+ I A G FG+R +GAG+ GC + LV + E+ + +++
Sbjct: 432 LYECSCIETNQICSIA-LANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFY 490
Query: 123 ELQPELASQLNADSAVLICKPGDCARVI 150
++ + A+++ KP +
Sbjct: 491 NVRYPDLTDEELKDAIIVSKPALGTCLY 518
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 76.2 bits (188), Expect = 2e-17
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 26 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS--GLSSIYNYECSEPLI-QLNEILQ 82
+ + F E +V EA K N +DFGKL++ + L S P + ++ +I
Sbjct: 216 ENKDEIFKEIDKVID--EALKIKNKEDFGKLMTKNHELLKK---LNISTPKLDRIVDIGN 270
Query: 83 RAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 123
FGA+ +GAG GC + LV+ ++ +E + E
Sbjct: 271 --RFGFGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDVR 309
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 64.2 bits (156), Expect = 4e-13
Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 5/121 (4%)
Query: 9 EEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS-GLSSIYN 67
+ K E + A G+ +F +++
Sbjct: 210 SAAIINEQKKNTSEGNQTAIEAMHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKMA 269
Query: 68 YECSEPLIQLNEILQRA--PGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQ 125
+ P + E A G + SGAG G + +V+ R EE + + +
Sbjct: 270 GAITNP--MIQEAFDVATGAGAMAGKVSGAGGGGFIMFVVEPTRKEEVVRALNNLNGFVM 327
Query: 126 P 126
P
Sbjct: 328 P 328
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6;
2.50A {Streptococcus pneumoniae}
Length = 292
Score = 60.9 bits (148), Expect = 5e-12
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 37 RVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECSEPLIQLNEILQ--RAPGVFGARFSG 94
+ A +++ G+++S + + S + + +++ + G GA+ SG
Sbjct: 199 LTQQAEIAISQKDAEGLGQILSQAH-LHLKEIGVSSL--EADSLVETALSHGALGAKMSG 255
Query: 95 AGFRGCCLALV-DADRAEEAASYVRSEYFE 123
G GC +ALV + A+E A + +
Sbjct: 256 GGLGGCIIALVTNLTHAQELAERLEEKGAV 285
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus
aureus}
Length = 308
Score = 60.5 bits (147), Expect = 7e-12
Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 9/117 (7%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 69
+ V++ HK +P +H + V + + + + + + + +
Sbjct: 189 QAVHDVHKLCEDPQYMSHVKH---IGKLVLRASDVIEHHKFEALADIFNECH-ADLKALT 244
Query: 70 CSEPLIQLNEILQ--RAPGVFGARFSGAGFRGCCLALV-DADRAEEAASYVRSEYFE 123
S ++ ++++ + G + +GAG G L L D A+ V
Sbjct: 245 VSHD--KIEQLMKIGKENGAIAGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAGAA 299
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 59.0 bits (143), Expect = 3e-11
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 16/143 (11%)
Query: 10 EEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYE 69
+ V + HK + + + Y V++ EA + G+ Q G+L++A+ +
Sbjct: 203 KVVNDVHKMKQQ-QPVQFKRLYDNYTHIVSQAREALQKGDLQRLGQLMNANH-DLCRQID 260
Query: 70 CSEPLIQLNEILQ--RAPGVFGARFSGAGFRGCCLALVDA-DRAEEAASYVRSEYFELQP 126
S +L I+Q R G GA+ SG G G +AL + D+ + ++++ E
Sbjct: 261 VSCR--ELESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPE--- 315
Query: 127 ELASQLNADSAVLICKPGDCARV 149
+P + +
Sbjct: 316 ------AKFIWRYTVQPSAASNL 332
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 44.1 bits (103), Expect = 4e-06
Identities = 13/110 (11%), Positives = 29/110 (26%), Gaps = 4/110 (3%)
Query: 13 YEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECSE 72
+ P L R + + A +L+ + +
Sbjct: 254 LIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQ-HHLNALGVGH 312
Query: 73 PLIQLNEILQRA-PGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 121
L+++ Q ++ +GAG GC + L+ +
Sbjct: 313 A--SLDQLCQVTAAHGLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 360
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 41.5 bits (97), Expect = 4e-05
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 13/97 (13%)
Query: 26 KRAEHYFTE-NRRVAKGLEAWKSGNSQDFGKLISAS-------GLSSIYNYECSEPLIQL 77
K +H+ T N + + ++A+ + + + I + G + N E S L
Sbjct: 242 KNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSL----L 297
Query: 78 NEILQRAPGV-FGARFSGAGFRGCCLALVDADRAEEA 113
E+ A + + SG+G C +A E
Sbjct: 298 KELADSAENMGGAGKSSGSGGGDCGIAFSKTKELAEK 334
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 6e-05
Identities = 28/155 (18%), Positives = 48/155 (30%), Gaps = 48/155 (30%)
Query: 8 VEE--EVYEAHKNELEP-------TLAKRAEHYFTENRRVAKGL--EAWKSGNS----QD 52
EE ++Y+ + + TL++ + +GL W S +D
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 53 FGKLISASGLSSIYNYECSEPLIQLN---------EILQRAPGVFGARFSGAGFRGCCLA 103
+ L+S S PLI + ++L PG + GA G
Sbjct: 230 Y--LLSI---------PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA--TGHSQG 276
Query: 104 LVDADRAEEAASYVRSEYFELQPELASQLNADSAV 138
LV A A + +F + A+
Sbjct: 277 LVTA--VAIAETDSWESFFV---------SVRKAI 300
Score = 27.3 bits (60), Expect = 2.7
Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 28/112 (25%)
Query: 63 SSIYNYECSEPLIQLNEILQRAPGVF-------------GARFSGAGFRG---------C 100
S+ Y + + L+ + Q P + G + A F G
Sbjct: 1714 STSYTFRSEKGLLSATQFTQ--PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALA 1771
Query: 101 CLALVDADRAEEAASYV--RSEYFELQPELASQLNADSAVLICKPGDCARVI 150
LA D E V R ++ ++ ++ PG A
Sbjct: 1772 SLA--DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase;
HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB:
1k47_A* 3gon_A*
Length = 337
Score = 36.9 bits (85), Expect = 0.001
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 38 VAKGLEAWKSGNSQDFGKLIS-ASGL-----SSIYNYECSEPLIQLNEILQRAPGVFGAR 91
V +EA + G S+ + + AS L + IY L QL E Q V A+
Sbjct: 238 VVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYT----PLLRQLKEASQDLQAV--AK 291
Query: 92 FSGAGFRGCCLALVDADRAEEA 113
SGAG C +AL ++ +
Sbjct: 292 SSGAGGGDCGIALSFDAQSTKT 313
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis
TOH structural genomics, PSI-2, protein structure
initiative; 1.70A {Bordetella pertussis}
Length = 313
Score = 26.1 bits (58), Expect = 5.3
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 13 YEAHKNELEPTLAKRAEHYFTENR 36
H EL+ +RA E R
Sbjct: 215 SLPHTRELDDEALRRARAVVVEWR 238
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 26.0 bits (58), Expect = 5.6
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 90 ARFSGAGFRGCCLALVDADRAEEAAS 115
+ G G A+ D D + A
Sbjct: 181 MATNRHGLAGSFAAVRDTDLRAQLAR 206
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase,
glycosidase, disease mutat glycoprotein, hydrolase,
lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN
GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
Length = 613
Score = 25.9 bits (57), Expect = 7.9
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 88 FGARFSGAGFRGCCLALVDADRA-EEAASYVRSEYFELQPE 127
F S G + R + AA +R Y+++ E
Sbjct: 572 FMTEQSPTRVLGNKKGIFTRQRQPKSAAFLLRERYWKIANE 612
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein,
ashka family, ATPase; 2.20A {Carboxydothermus
hydrogenoformans}
Length = 631
Score = 25.6 bits (55), Expect = 8.3
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 85 PGVFGARFSGAG---FRGCCLALVDADRAEEAASYVRS-EYFEL 124
P + +FS G +G AL+ E R Y EL
Sbjct: 560 PDIDINKFSYVGNSSLKGARKALLSRKACAEVKEIARKMTYLEL 603
>1vp2_A Putative xanthosine triphosphate pyrophosphatase/ protein homolog;
structural genomics, joint center for structural
genomics, JCSG; 1.78A {Thermotoga maritima} SCOP:
c.51.4.1
Length = 208
Score = 25.2 bits (56), Expect = 8.6
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 79 EILQRAPGVFGARFSG 94
L PGV ARF
Sbjct: 86 YSLGGFPGVMSARFME 101
>2guf_A Vitamin B12 transporter BTUB; beta barrel, cubic mesophase,
cobalamin, colicin, TRAN protein; HET: MPG; 1.95A
{Escherichia coli} SCOP: f.4.3.3 PDB: 1nqg_A* 1nqh_A*
1ujw_A* 1nqe_A* 2ysu_A 3m8b_A* 3m8d_A* 3rgm_A* 3rgn_A*
2gsk_A* 1nqf_A*
Length = 594
Score = 25.5 bits (56), Expect = 8.7
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 77 LNEILQRAPGVFGARFSGAG 96
+N++L+R PGV + G+G
Sbjct: 42 VNDVLRRLPGVDITQNGGSG 61
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase;
HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A*
3l0p_A*
Length = 223
Score = 25.3 bits (56), Expect = 8.8
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 21 EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSI 65
E + KR + Y+ +K+ +++ I G SI
Sbjct: 167 EGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSI 211
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 25.4 bits (56), Expect = 9.6
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 105 VDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKP 143
+A R Y + LA+ + AV +
Sbjct: 39 PTRAKALPICESWRIPYADSLSSLAASCD---AVFVHSS 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,259,251
Number of extensions: 121495
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 36
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.8 bits)