RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 031942
(150 letters)
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 98.2 bits (244), Expect = 3e-27
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 9/148 (6%)
Query: 5 LCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLS 63
L + E ++A+ + + + TL KRA H EN R +A+ +GN FG+L++AS S
Sbjct: 43 LGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHAS 102
Query: 64 SIYNYECSEPLI-QLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 122
+YE + + L E Q+ GV GAR +GAGF GC +ALV D V Y
Sbjct: 103 LKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYE 162
Query: 123 ELQPELASQLNADSAVLICKPGDCARVI 150
E + ++ + + G + +
Sbjct: 163 E-------VVGYPASFYVAQIGSGSTKL 183
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 94.0 bits (233), Expect = 1e-25
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 5 LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSS 64
L V+ E EA ++ + +RA H E RR A+ A + G+ + FG+L+ S S
Sbjct: 39 LREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSL 98
Query: 65 IYNYECSEP-LIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 123
+YE S P L QL E PGV+G+R +G GF GC + L++A A A +++ Y
Sbjct: 99 RDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY-- 156
Query: 124 LQPELASQLNADSAVLICKPGDCARVI 150
+ + + D A+V+
Sbjct: 157 ---------GGTATFYLSQAADGAKVL 174
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 86.3 bits (213), Expect = 8e-23
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 11 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYEC 70
EV E +L P K + EN RV + +A K G+ + GK+++ + NY
Sbjct: 41 EVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDALKEGDIEKVGKILTTAHWDLAENYRV 100
Query: 71 SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELAS 130
S + G +GAR +GAGF G +ALVD D+A+ + EY
Sbjct: 101 SCEELDFFVKKAMELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYLA------- 153
Query: 131 QLNADSAVLICKPGDCA 147
+ + + + KP D
Sbjct: 154 KFSWKAKYFVVKPSDGV 170
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 59.6 bits (144), Expect = 6e-13
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 26 KRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECSEPLIQLNEILQRAP 85
+ + F E +V EA K N +DFGKL++ + + S P + +
Sbjct: 36 ENKDEIFKEIDKVID--EALKIKNKEDFGKLMTKNH-ELLKKLNISTPKLDRIVDIGNR- 91
Query: 86 GVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFE 123
FGA+ +GAG GC + LV+ ++ +E + E
Sbjct: 92 FGFGAKLTGAGGGGCVIILVNEEKEKELLKELNKEDVR 129
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 44.2 bits (104), Expect = 8e-07
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 6/113 (5%)
Query: 11 EVYEAHKNELEPTLAKRAEHYFTENRRVAKGL-EAWKSGNSQDFGKLISAS-GLSSIYNY 68
+ P L + E RV + A +L+ + +
Sbjct: 27 SRLIKFPEIMAPLL-TSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALGV 85
Query: 69 ECSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 121
+ L QL ++ ++ +GAG GC + L+ +
Sbjct: 86 GHAS-LDQLCQVTAAH--GLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 135
>d1kmoa_ f.4.3.3 (A:) Outer membrane transporter FecA {Escherichia
coli [TaxId: 562]}
Length = 661
Score = 28.4 bits (61), Expect = 0.36
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 77 LNEILQRAPGVFGARFSGAGFRG 99
+ E+L R PGV +G G
Sbjct: 40 MREVLNRIPGVSAPENNGTGSHD 62
>d1fepa_ f.4.3.3 (A:) Ferric enterobactin receptor FepA
{Escherichia coli [TaxId: 562]}
Length = 714
Score = 28.1 bits (60), Expect = 0.50
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 77 LNEILQRAPGVFGARFSGAGFRG 99
+++I++ PGV S +G RG
Sbjct: 35 VSKIIRTMPGVNLTGNSTSGQRG 57
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 27.6 bits (60), Expect = 0.64
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 88 FGARFSGAGFRGCCLALVDADRAEEAASY-VRSEYFELQPE 127
F S G + R ++A++ +R Y+++ E
Sbjct: 264 FMTEQSPTRVLGNKKGIFTRQRQPKSAAFLLRERYWKIANE 304
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 27.4 bits (59), Expect = 0.82
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 59 ASGLSSIYNYECSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDA-DRAEEAA 114
A+ ++ IYN E + ++ LQR PG+ G ++G L D A + A
Sbjct: 291 AALVAGIYNLGHLERVAAIDAALQRLPGLHLI---GNAYKGV--GLNDCIRNAAQLA 342
>d2gufa1 f.4.3.3 (A:4-594) Outer membrane cobalamin transporter
BtuB {Escherichia coli [TaxId: 562]}
Length = 591
Score = 27.2 bits (58), Expect = 0.95
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 77 LNEILQRAPGVFGARFSGAG------FRG 99
+N++L+R PGV + G+G RG
Sbjct: 39 VNDVLRRLPGVDITQNGGSGQLSSIFIRG 67
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate
decarboxylase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 203
Score = 24.8 bits (54), Expect = 4.9
Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 4/62 (6%)
Query: 14 EAHKNELE--PTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGLSSIYNYECS 71
+ + + +R EH +R +A + F K S S
Sbjct: 20 QGMQLTVATSELFKERIEH--VVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDS 77
Query: 72 EP 73
P
Sbjct: 78 FP 79
>d2fc3a1 d.79.3.1 (A:4-127) Ribosomal protein L7ae {Aeropyrum pernix
[TaxId: 56636]}
Length = 124
Score = 23.3 bits (50), Expect = 9.8
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 94 GAGFRGCCLALVDADRAEEAASYVRSEYFELQ 125
G +A+++ AE + + EL+
Sbjct: 88 GIEVAAASVAIIEPGDAETLVREIVEKVKELR 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0390 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 537,141
Number of extensions: 21384
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 17
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.6 bits)