Query 031943
Match_columns 150
No_of_seqs 231 out of 1831
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:30:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 7.1E-23 1.5E-27 171.6 7.0 64 81-149 2-65 (371)
2 KOG0713 Molecular chaperone (D 99.8 2E-21 4.3E-26 160.0 6.7 63 81-148 14-76 (336)
3 PRK14288 chaperone protein Dna 99.8 2.3E-19 4.9E-24 151.4 6.5 61 83-148 3-63 (369)
4 PRK14296 chaperone protein Dna 99.8 6.2E-19 1.3E-23 148.9 6.8 61 82-148 3-63 (372)
5 smart00271 DnaJ DnaJ molecular 99.8 3.9E-18 8.4E-23 108.1 7.4 60 83-146 1-60 (60)
6 PRK14279 chaperone protein Dna 99.8 1.5E-18 3.2E-23 147.5 7.1 62 82-148 8-69 (392)
7 KOG0712 Molecular chaperone (D 99.7 1.4E-18 3E-23 144.2 5.8 59 82-148 3-61 (337)
8 PF00226 DnaJ: DnaJ domain; I 99.7 2.6E-18 5.7E-23 110.5 5.9 61 84-148 1-61 (64)
9 PRK14286 chaperone protein Dna 99.7 2.3E-18 4.9E-23 145.5 6.9 62 82-148 3-64 (372)
10 PRK14282 chaperone protein Dna 99.7 2.5E-18 5.5E-23 145.0 7.1 63 82-148 3-65 (369)
11 KOG0717 Molecular chaperone (D 99.7 2.7E-18 5.9E-23 146.0 6.6 64 81-148 6-69 (508)
12 cd06257 DnaJ DnaJ domain or J- 99.7 1.7E-17 3.7E-22 103.3 7.1 55 84-143 1-55 (55)
13 PRK14285 chaperone protein Dna 99.7 1E-17 2.2E-22 141.2 7.1 61 83-148 3-63 (365)
14 PRK14287 chaperone protein Dna 99.7 1.1E-17 2.4E-22 141.3 6.8 60 83-148 4-63 (371)
15 PRK14277 chaperone protein Dna 99.7 1.2E-17 2.7E-22 141.6 7.0 62 82-148 4-65 (386)
16 PTZ00037 DnaJ_C chaperone prot 99.7 1.3E-17 2.8E-22 142.8 7.2 58 82-148 27-84 (421)
17 PRK14295 chaperone protein Dna 99.7 1.3E-17 2.8E-22 141.6 6.9 61 83-148 9-69 (389)
18 PRK14299 chaperone protein Dna 99.7 1.5E-17 3.3E-22 136.3 6.6 61 82-148 3-63 (291)
19 PRK14297 chaperone protein Dna 99.7 1.9E-17 4.1E-22 140.1 7.3 61 83-148 4-64 (380)
20 KOG0716 Molecular chaperone (D 99.7 1.5E-17 3.3E-22 133.7 6.2 62 82-148 30-91 (279)
21 PRK14283 chaperone protein Dna 99.7 1.7E-17 3.6E-22 140.4 6.5 61 82-148 4-64 (378)
22 PRK14276 chaperone protein Dna 99.7 1.9E-17 4.2E-22 140.1 6.8 61 82-148 3-63 (380)
23 PRK14294 chaperone protein Dna 99.7 2.1E-17 4.6E-22 139.2 6.9 62 82-148 3-64 (366)
24 PRK14301 chaperone protein Dna 99.7 2.3E-17 5E-22 139.4 7.1 62 82-148 3-64 (373)
25 PRK14278 chaperone protein Dna 99.7 2.6E-17 5.5E-22 139.3 6.5 60 83-148 3-62 (378)
26 PRK10767 chaperone protein Dna 99.7 3.2E-17 7E-22 138.3 7.1 62 82-148 3-64 (371)
27 PRK14284 chaperone protein Dna 99.7 3E-17 6.4E-22 139.4 6.7 61 83-148 1-61 (391)
28 PRK14298 chaperone protein Dna 99.7 2.9E-17 6.3E-22 139.0 6.5 61 82-148 4-64 (377)
29 PRK14291 chaperone protein Dna 99.7 2.7E-17 5.9E-22 139.3 6.2 60 83-148 3-62 (382)
30 PRK14280 chaperone protein Dna 99.7 3.3E-17 7.1E-22 138.6 6.7 60 83-148 4-63 (376)
31 PRK14290 chaperone protein Dna 99.7 4.2E-17 9E-22 137.4 6.9 62 83-148 3-64 (365)
32 PRK14281 chaperone protein Dna 99.7 3.9E-17 8.4E-22 139.0 6.7 61 83-148 3-63 (397)
33 KOG0691 Molecular chaperone (D 99.7 5E-17 1.1E-21 133.3 6.5 62 82-148 4-65 (296)
34 PRK10266 curved DNA-binding pr 99.7 1.3E-16 2.7E-21 131.6 6.5 61 82-148 3-63 (306)
35 KOG0715 Molecular chaperone (D 99.7 1.7E-16 3.7E-21 130.1 6.3 61 82-148 42-102 (288)
36 PRK14289 chaperone protein Dna 99.6 2.2E-16 4.8E-21 133.9 7.1 62 82-148 4-65 (386)
37 TIGR02349 DnaJ_bact chaperone 99.6 1.9E-16 4.1E-21 132.8 6.1 59 84-148 1-59 (354)
38 PRK14292 chaperone protein Dna 99.6 2.6E-16 5.6E-21 132.8 6.8 61 82-148 1-61 (371)
39 PRK14300 chaperone protein Dna 99.6 2.9E-16 6.2E-21 132.7 6.4 60 83-148 3-62 (372)
40 PRK14293 chaperone protein Dna 99.6 6.2E-16 1.4E-20 130.7 6.4 60 83-148 3-62 (374)
41 PTZ00341 Ring-infected erythro 99.6 1.3E-15 2.8E-20 139.3 7.3 62 81-148 571-632 (1136)
42 COG2214 CbpA DnaJ-class molecu 99.6 2E-15 4.4E-20 114.9 6.8 64 81-148 4-67 (237)
43 KOG0718 Molecular chaperone (D 99.6 1.5E-15 3.2E-20 129.7 6.1 64 81-148 7-72 (546)
44 KOG0721 Molecular chaperone (D 99.6 1.7E-15 3.7E-20 118.5 5.8 63 81-148 97-159 (230)
45 KOG0719 Molecular chaperone (D 99.6 3E-15 6.4E-20 118.4 5.4 64 81-148 12-76 (264)
46 PRK05014 hscB co-chaperone Hsc 99.5 1.3E-14 2.8E-19 110.9 7.2 64 83-148 1-68 (171)
47 PHA03102 Small T antigen; Revi 99.5 1.2E-14 2.6E-19 109.2 5.7 61 82-149 4-64 (153)
48 PRK01356 hscB co-chaperone Hsc 99.5 3.3E-14 7.2E-19 108.2 6.9 64 83-148 2-67 (166)
49 PRK00294 hscB co-chaperone Hsc 99.5 7.4E-14 1.6E-18 107.0 7.4 66 81-148 2-71 (173)
50 PRK03578 hscB co-chaperone Hsc 99.5 8.9E-14 1.9E-18 106.8 7.7 65 82-148 5-73 (176)
51 PTZ00100 DnaJ chaperone protei 99.5 7.5E-14 1.6E-18 100.3 6.5 55 79-142 61-115 (116)
52 TIGR03835 termin_org_DnaJ term 99.5 6.4E-14 1.4E-18 125.9 6.6 60 83-148 2-61 (871)
53 PRK09430 djlA Dna-J like membr 99.5 7.5E-14 1.6E-18 113.4 6.2 61 80-144 197-263 (267)
54 KOG0624 dsRNA-activated protei 99.4 2.4E-13 5.2E-18 113.7 5.2 64 82-149 393-458 (504)
55 KOG0720 Molecular chaperone (D 99.4 6.2E-13 1.3E-17 113.5 4.9 61 82-148 234-294 (490)
56 KOG0722 Molecular chaperone (D 99.3 9.2E-13 2E-17 105.8 3.3 61 82-148 32-92 (329)
57 KOG1150 Predicted molecular ch 99.3 2.9E-12 6.4E-17 99.6 5.8 69 74-146 44-112 (250)
58 KOG0550 Molecular chaperone (D 99.3 2.4E-12 5.2E-17 109.3 4.6 63 82-148 372-434 (486)
59 KOG0714 Molecular chaperone (D 99.3 2.6E-12 5.7E-17 102.2 4.4 63 82-148 2-64 (306)
60 PRK01773 hscB co-chaperone Hsc 99.2 2.3E-11 5.1E-16 93.2 6.9 65 82-148 1-69 (173)
61 PHA02624 large T antigen; Prov 99.2 1.4E-11 3.1E-16 109.3 6.3 60 82-148 10-69 (647)
62 COG5407 SEC63 Preprotein trans 99.1 2.4E-11 5.2E-16 104.1 3.8 63 82-148 97-163 (610)
63 TIGR00714 hscB Fe-S protein as 99.0 4.7E-10 1E-14 84.7 6.6 51 98-148 2-56 (157)
64 COG5269 ZUO1 Ribosome-associat 98.8 6.7E-09 1.5E-13 84.4 4.5 68 80-148 40-108 (379)
65 KOG1789 Endocytosis protein RM 98.8 1.5E-08 3.3E-13 94.2 6.7 63 78-144 1276-1338(2235)
66 KOG0568 Molecular chaperone (D 98.4 3.1E-07 6.8E-12 73.4 5.3 56 82-143 46-102 (342)
67 KOG0723 Molecular chaperone (D 98.4 4.6E-07 9.9E-12 64.0 5.4 56 80-144 53-108 (112)
68 KOG3192 Mitochondrial J-type c 97.7 5.8E-05 1.3E-09 56.9 4.3 66 81-148 6-75 (168)
69 COG1076 DjlA DnaJ-domain-conta 97.4 0.00011 2.4E-09 56.1 3.2 55 83-141 113-173 (174)
70 KOG0431 Auxilin-like protein a 97.1 0.00077 1.7E-08 58.8 5.2 45 99-143 400-450 (453)
71 PF03656 Pam16: Pam16; InterP 96.6 0.0048 1E-07 45.1 5.2 56 79-143 54-109 (127)
72 COG1076 DjlA DnaJ-domain-conta 96.3 0.0017 3.6E-08 49.6 1.4 63 84-148 2-68 (174)
73 PF13446 RPT: A repeated domai 94.7 0.1 2.2E-06 33.0 4.9 29 81-113 3-31 (62)
74 PF14687 DUF4460: Domain of un 86.0 1.9 4.1E-05 30.8 4.7 46 100-145 7-55 (112)
75 KOG0724 Zuotin and related mol 85.5 1.1 2.4E-05 37.2 3.8 47 100-146 5-54 (335)
76 PF07709 SRR: Seven Residue Re 64.0 4.5 9.8E-05 18.1 1.0 13 130-142 2-14 (14)
77 COG2879 Uncharacterized small 61.9 16 0.00034 23.6 3.6 28 107-137 27-54 (65)
78 KOG3442 Uncharacterized conser 57.7 15 0.00032 26.9 3.3 39 80-122 56-94 (132)
79 KOG3960 Myogenic helix-loop-he 38.9 22 0.00047 29.1 1.9 16 128-143 127-142 (284)
80 PF08447 PAS_3: PAS fold; Int 34.9 13 0.00029 23.5 0.1 29 83-119 6-35 (91)
81 PF02216 B: B domain; InterPr 30.4 84 0.0018 19.5 3.1 31 83-120 11-41 (54)
82 PF12434 Malate_DH: Malate deh 30.1 65 0.0014 17.3 2.2 18 100-117 9-26 (28)
83 PF11833 DUF3353: Protein of u 25.4 1.2E+02 0.0026 23.6 4.0 21 92-116 1-21 (194)
84 cd00084 HMG-box High Mobility 24.8 1.6E+02 0.0034 17.4 3.8 38 103-146 10-47 (66)
85 CHL00185 ycf59 magnesium-proto 23.9 1.2E+02 0.0025 26.0 3.8 57 82-142 249-305 (351)
86 KOG2475 CDC45 (cell division c 22.7 87 0.0019 28.4 3.0 43 7-49 169-211 (587)
87 PF04328 DUF466: Protein of un 21.8 2.3E+02 0.0049 18.1 4.2 29 106-137 26-54 (65)
88 cd01390 HMGB-UBF_HMG-box HMGB- 21.6 1.1E+02 0.0024 18.3 2.6 35 106-146 13-47 (66)
89 PF05835 Synaphin: Synaphin pr 21.3 2.7E+02 0.0059 20.6 5.0 29 7-35 46-74 (139)
90 cd01388 SOX-TCF_HMG-box SOX-TC 21.2 1.2E+02 0.0025 19.1 2.7 36 105-146 13-48 (72)
91 TIGR03180 UraD_2 OHCU decarbox 20.3 1.6E+02 0.0035 22.0 3.7 13 127-139 92-104 (158)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.1e-23 Score=171.64 Aligned_cols=64 Identities=41% Similarity=0.689 Sum_probs=59.0
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccccC
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 149 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~~ 149 (150)
...|||+||||+++| |.+|||+|||+||++||||+|++++ +|+++|++|++||+|||||+||..
T Consensus 2 ~~~dyYeiLGV~k~A----s~~EIKkAYRkLA~kyHPD~n~g~~-~AeeKFKEI~eAYEVLsD~eKRa~ 65 (371)
T COG0484 2 AKRDYYEILGVSKDA----SEEEIKKAYRKLAKKYHPDRNPGDK-EAEEKFKEINEAYEVLSDPEKRAA 65 (371)
T ss_pred CccchhhhcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHHHHhCCHHHHHH
Confidence 357999999999999 9999999999999999999999643 499999999999999999999863
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2e-21 Score=160.02 Aligned_cols=63 Identities=33% Similarity=0.602 Sum_probs=59.8
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...|||+||||+.+| +..+||+|||+||+++|||+|++++. |.+.|++|+.||+|||||.+|.
T Consensus 14 ~~rDfYelLgV~k~A----sd~eIKkAYRKLALk~HPDkNpddp~-A~e~F~~in~AYEVLsDpekRk 76 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNA----SDQEIKKAYRKLALKYHPDKNPDDPN-ANEKFKEINAAYEVLSDPEKRK 76 (336)
T ss_pred cCCCHHHHhCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHHHHhcCHHHHH
Confidence 568999999999999 99999999999999999999998865 9999999999999999999986
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.3e-19 Score=151.40 Aligned_cols=61 Identities=33% Similarity=0.606 Sum_probs=56.6
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.|||+||||+++| |.++||+|||+||++||||+++.+. .|+++|++|++||+||+||.+|.
T Consensus 3 ~dyY~vLgv~~~A----s~~eIkkayrkla~k~HPD~~~~~~-~a~~~f~~i~~AYevLsd~~kR~ 63 (369)
T PRK14288 3 LSYYEILEVEKHS----NQETIKKSYRKLALKYHPDRNAGDK-EAEEKFKLINEAYGVLSDEKKRA 63 (369)
T ss_pred CChHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCcc-HHHHHHHHHHHHHHHhccHHHHH
Confidence 5899999999999 9999999999999999999997543 38899999999999999999985
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.2e-19 Score=148.90 Aligned_cols=61 Identities=31% Similarity=0.515 Sum_probs=56.6
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||+++| |.++||+|||+||++||||++++ +.|+++|++|++||+||+||.+|.
T Consensus 3 ~~dyY~~Lgv~~~a----~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~AyevLsD~~KR~ 63 (372)
T PRK14296 3 KKDYYEVLGVSKTA----SEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAADVLLDKDKRK 63 (372)
T ss_pred CCCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHhcCHHHhh
Confidence 36999999999999 99999999999999999999975 348899999999999999999985
No 5
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.75 E-value=3.9e-18 Score=108.09 Aligned_cols=60 Identities=43% Similarity=0.715 Sum_probs=54.4
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k 146 (150)
.+||+||||++++ +.++|+++|+++++.+|||++++..+.+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~----~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDA----SLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 3799999999998 99999999999999999999876445689999999999999999853
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.5e-18 Score=147.46 Aligned_cols=62 Identities=35% Similarity=0.547 Sum_probs=57.3
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||+++| |.++||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus 8 ~~Dyy~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vLsD~~KR~ 69 (392)
T PRK14279 8 EKDFYKELGVSSDA----SAEEIKKAYRKLARELHPDANPGDP-AAEERFKAVSEAHDVLSDPAKRK 69 (392)
T ss_pred ccCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCh-HHHHHHHHHHHHHHHhcchhhhh
Confidence 36999999999999 9999999999999999999997653 48899999999999999999985
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.4e-18 Score=144.23 Aligned_cols=59 Identities=37% Similarity=0.610 Sum_probs=56.1
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+|+||||+++| |.+|||+|||+|+++||||||++ +.++|++|..||+|||||++|.
T Consensus 3 ~~~~y~il~v~~~A----s~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~ 61 (337)
T KOG0712|consen 3 NTKLYDILGVSPDA----SEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKRE 61 (337)
T ss_pred ccccceeeccCCCc----CHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHH
Confidence 46799999999999 99999999999999999999998 7899999999999999999985
No 8
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.75 E-value=2.6e-18 Score=110.50 Aligned_cols=61 Identities=34% Similarity=0.658 Sum_probs=56.5
Q ss_pred chhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 84 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 84 ~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
+||+||||++++ +.++|+++|+++++.+|||+++.....+.+.|..|++||++|++|.+|.
T Consensus 1 ~~y~iLgl~~~~----~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDA----SDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTS----SHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCC----CHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 589999999999 9999999999999999999987665568999999999999999998875
No 9
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.3e-18 Score=145.45 Aligned_cols=62 Identities=39% Similarity=0.704 Sum_probs=57.0
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||+++| |.++||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus 3 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~kR~ 64 (372)
T PRK14286 3 ERSYYDILGVSKSA----NDEEIKSAYRKLAIKYHPDKNKGNK-ESEEKFKEATEAYEILRDPKKRQ 64 (372)
T ss_pred CCCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCch-HHHHHHHHHHHHHHHhccHHHHH
Confidence 36999999999999 9999999999999999999997643 38899999999999999999885
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.5e-18 Score=144.97 Aligned_cols=63 Identities=38% Similarity=0.659 Sum_probs=58.1
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||+++| |.++||+|||+||++||||+++.....|+++|++|++||+||+||.+|.
T Consensus 3 ~~d~y~~lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 65 (369)
T PRK14282 3 KKDYYEILGVSRNA----TQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65 (369)
T ss_pred CCChHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence 36999999999999 9999999999999999999997654458999999999999999999985
No 11
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.7e-18 Score=146.05 Aligned_cols=64 Identities=30% Similarity=0.536 Sum_probs=61.1
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
....||+||||..++ ++.+||++||+||++||||++|+..+.|++.|+.|+.||+|||||..|.
T Consensus 6 ~~~c~YE~L~v~~~a----~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~ 69 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDA----DDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA 69 (508)
T ss_pred hhhHHHHHhcccccC----CHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence 567999999999999 9999999999999999999999998899999999999999999999874
No 12
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.72 E-value=1.7e-17 Score=103.27 Aligned_cols=55 Identities=38% Similarity=0.672 Sum_probs=51.0
Q ss_pred chhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcC
Q 031943 84 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQ 143 (150)
Q Consensus 84 ~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d 143 (150)
+||+||||++++ |.++|+++|++|++.+|||++++. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~----~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDA----SDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcC
Confidence 689999999998 999999999999999999998764 4588999999999999986
No 13
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=1e-17 Score=141.22 Aligned_cols=61 Identities=41% Similarity=0.689 Sum_probs=56.5
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.|||+||||+++| |.++||+|||+|+++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus 3 ~d~y~iLgv~~~a----~~~eIk~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~kr~ 63 (365)
T PRK14285 3 RDYYEILGLSKGA----SKDEIKKAYRKIAIKYHPDKNKGNK-EAESIFKEATEAYEVLIDDNKRA 63 (365)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHcCcchhH
Confidence 5899999999999 9999999999999999999997653 48899999999999999999885
No 14
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.1e-17 Score=141.27 Aligned_cols=60 Identities=40% Similarity=0.681 Sum_probs=56.0
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.|||+||||+++| |.++||+|||+||++||||++++ +.++++|++|++||+||+||.+|.
T Consensus 4 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~ 63 (371)
T PRK14287 4 RDYYEVLGVDRNA----SVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKA 63 (371)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHH
Confidence 6999999999999 99999999999999999999874 348899999999999999999885
No 15
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.2e-17 Score=141.58 Aligned_cols=62 Identities=47% Similarity=0.735 Sum_probs=57.0
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||+++| |.++||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus 4 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~kr~ 65 (386)
T PRK14277 4 KKDYYEILGVDRNA----TEEEIKKAYRRLAKKYHPDLNPGDK-EAEQKFKEINEAYEILSDPQKRA 65 (386)
T ss_pred CCCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCch-HHHHHHHHHHHHHHHhCCHHHHH
Confidence 36999999999999 9999999999999999999997643 48899999999999999999885
No 16
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.71 E-value=1.3e-17 Score=142.84 Aligned_cols=58 Identities=36% Similarity=0.527 Sum_probs=54.2
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..+||+||||+++| |.++||+|||+||++||||++++ .++|++|++||+||+||.+|.
T Consensus 27 ~~d~Y~vLGV~~~A----s~~eIKkAYrkla~k~HPDk~~~-----~e~F~~i~~AYevLsD~~kR~ 84 (421)
T PTZ00037 27 NEKLYEVLNLSKDC----TTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRK 84 (421)
T ss_pred chhHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHHhccHHHHH
Confidence 57999999999999 99999999999999999999863 479999999999999999985
No 17
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.3e-17 Score=141.59 Aligned_cols=61 Identities=44% Similarity=0.761 Sum_probs=56.5
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.|||+||||+++| |.++||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus 9 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~r~ 69 (389)
T PRK14295 9 KDYYKVLGVPKDA----TEAEIKKAYRKLAREYHPDANKGDA-KAEERFKEISEAYDVLSDEKKRK 69 (389)
T ss_pred cCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCch-hHHHHHHHHHHHHHHHCchhhHH
Confidence 5999999999999 9999999999999999999987643 48899999999999999999885
No 18
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.5e-17 Score=136.30 Aligned_cols=61 Identities=34% Similarity=0.624 Sum_probs=56.2
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||+++| |.++||+|||+||++||||++++ +.++++|++|++||++|+||.+|.
T Consensus 3 ~~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~kr~ 63 (291)
T PRK14299 3 YKDYYAILGVPKNA----SQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRR 63 (291)
T ss_pred CCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhcCHHHHH
Confidence 36999999999999 99999999999999999999874 348899999999999999999884
No 19
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.9e-17 Score=140.14 Aligned_cols=61 Identities=44% Similarity=0.748 Sum_probs=56.8
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.|||+||||+++| |.++||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus 4 ~d~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~r~ 64 (380)
T PRK14297 4 KDYYEVLGLEKGA----SDDEIKKAFRKLAIKYHPDKNKGNK-EAEEKFKEINEAYQVLSDPQKKA 64 (380)
T ss_pred CChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCcH-HHHHHHHHHHHHHHHhcCHhhhC
Confidence 6999999999999 9999999999999999999997653 48899999999999999999885
No 20
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.5e-17 Score=133.67 Aligned_cols=62 Identities=39% Similarity=0.586 Sum_probs=58.1
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..++|+||||++++ +.++||++||+|++++|||++++++ ++..+|++||.||++|+||.+|.
T Consensus 30 ~~~LYdVLgl~k~a----t~d~IKKaYR~L~~k~HPD~~gd~P-~~~dkf~eIN~Ay~ILsD~~kR~ 91 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTA----TKDEIKKAYRKLALKYHPDKNGDNP-EATDKFKEINTAYAILSDPTKRN 91 (279)
T ss_pred hhHHHHHhCCCccc----chHHHHHHHHHHHHHhCCCcCCCCc-hhHHHHHHHHHHHHHhcChhhhh
Confidence 56899999999999 9999999999999999999999874 48899999999999999999985
No 21
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.7e-17 Score=140.42 Aligned_cols=61 Identities=39% Similarity=0.665 Sum_probs=56.6
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||+++| |.++||+|||+||++||||++++ +.|+++|++|++||+||+||.+|.
T Consensus 4 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~ 64 (378)
T PRK14283 4 KRDYYEVLGVDRNA----DKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQ 64 (378)
T ss_pred cCChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHH
Confidence 46999999999999 99999999999999999999975 448999999999999999999884
No 22
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.9e-17 Score=140.12 Aligned_cols=61 Identities=36% Similarity=0.605 Sum_probs=56.4
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||+++| |.++||+|||+||++||||++++ +.|+++|++|++||+||+||.+|.
T Consensus 3 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~ 63 (380)
T PRK14276 3 NTEYYDRLGVSKDA----SQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRA 63 (380)
T ss_pred CCCHHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhcCHhhhh
Confidence 36999999999999 99999999999999999999975 348899999999999999999985
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.1e-17 Score=139.24 Aligned_cols=62 Identities=39% Similarity=0.644 Sum_probs=57.0
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||+++| |.++||+|||+||++||||+++++. .+++.|+.|++||+||+||.+|.
T Consensus 3 ~~d~y~~lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~-~~~~~f~~~~~Ay~vL~d~~~r~ 64 (366)
T PRK14294 3 KRDYYEILGVTRDA----SEEEIKKSYRKLAMKYHPDRNPGDK-EAEELFKEAAEAYEVLSDPKKRG 64 (366)
T ss_pred CCChHHHhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCch-HHHHHHHHHHHHHHHhccHHHHH
Confidence 46999999999999 9999999999999999999997654 38899999999999999999885
No 24
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.3e-17 Score=139.41 Aligned_cols=62 Identities=42% Similarity=0.656 Sum_probs=57.0
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||+++| |.++||+|||+||++||||+++++. .|+++|++|++||+||+||.+|.
T Consensus 3 ~~~~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~kr~ 64 (373)
T PRK14301 3 QRDYYEVLGVSRDA----SEDEIKKAYRKLALQYHPDRNPDNP-EAEQKFKEAAEAYEVLRDAEKRA 64 (373)
T ss_pred CCChHHhcCCCCCC----CHHHHHHHHHHHHHHhCCCcCCCCh-HHHHHHHHHHHHHHHhcchhhhh
Confidence 36999999999999 9999999999999999999997653 48899999999999999999885
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.6e-17 Score=139.34 Aligned_cols=60 Identities=43% Similarity=0.708 Sum_probs=56.0
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.|||+||||+++| |.++||+|||+||++||||++++ +.|+++|++|++||+||+||.+|.
T Consensus 3 ~d~y~iLgv~~~a----~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~ 62 (378)
T PRK14278 3 RDYYGLLGVSRNA----SDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRR 62 (378)
T ss_pred CCcceecCCCCCC----CHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhh
Confidence 5899999999999 99999999999999999999974 448899999999999999999885
No 26
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.2e-17 Score=138.26 Aligned_cols=62 Identities=44% Similarity=0.709 Sum_probs=56.9
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||+++| |.++||+|||+||++||||+++++. .|+++|++|++||++|+||.+|.
T Consensus 3 ~~d~y~iLgv~~~a----s~~eik~ayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~r~ 64 (371)
T PRK10767 3 KRDYYEVLGVSRNA----SEDEIKKAYRKLAMKYHPDRNPGDK-EAEEKFKEIKEAYEVLSDPQKRA 64 (371)
T ss_pred CCChHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCcH-HHHHHHHHHHHHHHHhcchhhhh
Confidence 36999999999999 9999999999999999999997544 38899999999999999999885
No 27
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3e-17 Score=139.44 Aligned_cols=61 Identities=38% Similarity=0.679 Sum_probs=56.3
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.|||+||||+++| |.++||+|||+||++||||++++.. .|+++|++|++||+||+||.+|.
T Consensus 1 ~d~y~iLgv~~~a----~~~eikkayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~kR~ 61 (391)
T PRK14284 1 MDYYTILGVSKTA----SPEEIKKAYRKLAVKYHPDKNPGDA-EAEKRFKEVSEAYEVLSDAQKRE 61 (391)
T ss_pred CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCch-HHHHHHHHHHHHHHHhcCHHHHH
Confidence 3899999999999 9999999999999999999998653 48899999999999999998885
No 28
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.9e-17 Score=138.97 Aligned_cols=61 Identities=34% Similarity=0.598 Sum_probs=56.3
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||+++| |.++||+|||+||++||||++++ +.++++|++|++||+||+||.+|.
T Consensus 4 ~~d~y~iLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~kR~ 64 (377)
T PRK14298 4 TRDYYEILGLSKDA----SVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRA 64 (377)
T ss_pred CCCHHHhhCCCCCC----CHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHHHHHhcchHhhh
Confidence 36999999999999 99999999999999999999875 348899999999999999999885
No 29
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.7e-17 Score=139.30 Aligned_cols=60 Identities=38% Similarity=0.657 Sum_probs=55.9
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.|||+||||+++| |.++||+|||+||++||||++++ +.++++|+.|++||+||+||.+|.
T Consensus 3 ~d~Y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vLsd~~kR~ 62 (382)
T PRK14291 3 KDYYEILGVSRNA----TQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRK 62 (382)
T ss_pred CCHHHhhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhcCHHHHH
Confidence 5899999999999 99999999999999999999975 347899999999999999999885
No 30
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.3e-17 Score=138.56 Aligned_cols=60 Identities=37% Similarity=0.683 Sum_probs=55.9
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.+||+||||+++| |.++||+|||+|+++||||++++. .|+++|++|++||+||+||.+|.
T Consensus 4 ~~~y~iLgv~~~a----~~~eik~ayr~la~~~HpD~~~~~--~a~~~f~~i~~Ay~vL~d~~kr~ 63 (376)
T PRK14280 4 RDYYEVLGVSKSA----SKDEIKKAYRKLSKKYHPDINKEE--GADEKFKEISEAYEVLSDDQKRA 63 (376)
T ss_pred CChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHhccHhHHH
Confidence 6999999999999 999999999999999999998753 38899999999999999999885
No 31
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=4.2e-17 Score=137.42 Aligned_cols=62 Identities=44% Similarity=0.730 Sum_probs=57.9
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.|||+||||+++| |.++||+|||+|+++||||++++..+.|+++|+.|++||+||+||.+|.
T Consensus 3 ~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (365)
T PRK14290 3 KDYYKILGVDRNA----SQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64 (365)
T ss_pred CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhh
Confidence 5899999999999 9999999999999999999998765568999999999999999999885
No 32
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.9e-17 Score=139.02 Aligned_cols=61 Identities=43% Similarity=0.669 Sum_probs=56.4
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.|||+||||+++| |.++||+|||+||++||||++++.. .|+++|++|++||++|+||.+|.
T Consensus 3 ~d~y~iLgv~~~a----~~~eikkayr~la~~~HPD~~~~~~-~a~~~f~~i~~Ay~vL~d~~~r~ 63 (397)
T PRK14281 3 RDYYEVLGVSRSA----DKDEIKKAYRKLALKYHPDKNPDNK-EAEEHFKEVNEAYEVLSNDDKRR 63 (397)
T ss_pred CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCch-HHHHHHHHHHHHHHHhhhhhhhh
Confidence 5899999999999 9999999999999999999997653 38899999999999999999875
No 33
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5e-17 Score=133.32 Aligned_cols=62 Identities=39% Similarity=0.673 Sum_probs=59.3
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||.||||+.++ |..+|++||+..+++||||||++++. |.++|+.|.+||+||+|+..|.
T Consensus 4 ~~dyY~lLgi~~~a----t~~eIkKaYr~kaL~~HPDKNp~dP~-A~ekFq~L~eAy~VL~D~~~R~ 65 (296)
T KOG0691|consen 4 DTDYYDLLGISEDA----TDAEIKKAYRKKALQYHPDKNPGDPQ-AAEKFQELSEAYEVLSDEESRA 65 (296)
T ss_pred cchHHHHhCCCCCC----CHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHHHHhcCHHHHH
Confidence 57999999999999 99999999999999999999999987 9999999999999999999885
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.66 E-value=1.3e-16 Score=131.63 Aligned_cols=61 Identities=34% Similarity=0.619 Sum_probs=56.1
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||++++ |.++||+|||+||++||||++++. .++++|++|++||++|+||.+|.
T Consensus 3 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~k~HPD~~~~~--~~~~~f~~i~~Ay~~L~~~~kr~ 63 (306)
T PRK10266 3 LKDYYAIMGVKPTD----DLKTIKTAYRRLARKYHPDVSKEP--DAEARFKEVAEAWEVLSDEQRRA 63 (306)
T ss_pred cCChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHhhhHHHHH
Confidence 46999999999999 999999999999999999998652 48899999999999999999884
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.7e-16 Score=130.10 Aligned_cols=61 Identities=44% Similarity=0.665 Sum_probs=57.1
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..+||+||||+++| +..|||+||++|+++||||.+.+. .|.++|++|.+||++|+|+.+|.
T Consensus 42 ~~d~Y~vLgv~~~A----t~~EIK~Af~~LaKkyHPD~n~~~--~a~~kF~eI~~AYEiLsd~eKR~ 102 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNA----TLSEIKSAFRKLAKKYHPDVNKDK--EASKKFKEISEAYEILSDEEKRQ 102 (288)
T ss_pred CcchhhhhCcCCCC----CHHHHHHHHHHHHHhhCCCCCCCc--chhhHHHHHHHHHHHhcCHHHHH
Confidence 34999999999999 999999999999999999999875 49999999999999999999885
No 36
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=2.2e-16 Score=133.85 Aligned_cols=62 Identities=42% Similarity=0.680 Sum_probs=57.0
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|||+||||+++| |.++|++|||+||++||||+++++. .|+++|++|++||++|+||.+|.
T Consensus 4 ~~~~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~ 65 (386)
T PRK14289 4 KRDYYEVLGVSKTA----TVDEIKKAYRKKAIQYHPDKNPGDK-EAEEKFKEAAEAYDVLSDPDKRS 65 (386)
T ss_pred cCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCCh-HHHHHHHHHHHHHHHhcCHHHHH
Confidence 36999999999999 9999999999999999999997654 48899999999999999998875
No 37
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.64 E-value=1.9e-16 Score=132.77 Aligned_cols=59 Identities=41% Similarity=0.705 Sum_probs=54.6
Q ss_pred chhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 84 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 84 ~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
|||+||||+++| |.++||+||++||++||||+++. +.++++|+.|++||+||+||.+|.
T Consensus 1 d~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~ 59 (354)
T TIGR02349 1 DYYEILGVSKDA----SEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRA 59 (354)
T ss_pred ChHHhCCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHH
Confidence 699999999999 99999999999999999999873 347899999999999999999885
No 38
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.6e-16 Score=132.80 Aligned_cols=61 Identities=31% Similarity=0.597 Sum_probs=56.2
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
+.|||+||||+++| |.++||+||++|+++||||++++ ..+.++|+.|++||+||+||.+|.
T Consensus 1 ~~d~y~~Lgv~~~a----~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~~~i~~Ay~vL~d~~~r~ 61 (371)
T PRK14292 1 MMDYYELLGVSRTA----SADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRA 61 (371)
T ss_pred CCChHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--hhHHHHHHHHHHHHHHhcchhhhh
Confidence 35899999999999 99999999999999999999974 348899999999999999999885
No 39
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=2.9e-16 Score=132.67 Aligned_cols=60 Identities=35% Similarity=0.686 Sum_probs=55.4
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.|||+||||+++| |.++||+|||+|+++||||+++. ..++++|++|++||++|+|+.+|.
T Consensus 3 ~~~y~iLgv~~~a----s~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~ 62 (372)
T PRK14300 3 QDYYQILGVSKTA----SQADLKKAYLKLAKQYHPDTTDA--KDAEKKFKEINAAYDVLKDEQKRA 62 (372)
T ss_pred CChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhhhHhHhh
Confidence 5899999999999 99999999999999999999874 237889999999999999999885
No 40
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=6.2e-16 Score=130.68 Aligned_cols=60 Identities=33% Similarity=0.625 Sum_probs=55.5
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.|||+||||++++ |.++||+|||+|+++||||++++ +.++++|+.|++||+||+||.+|.
T Consensus 3 ~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~vL~~~~~R~ 62 (374)
T PRK14293 3 ADYYEILGVSRDA----DKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRA 62 (374)
T ss_pred CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHHHHHHhchHHHH
Confidence 5899999999999 99999999999999999999875 337899999999999999999884
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.60 E-value=1.3e-15 Score=139.31 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=57.4
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||+++| |..+||+|||+||++||||++++. .|..+|+.|++||+||+||.+|.
T Consensus 571 ~d~dYYdILGVs~dA----S~~EIKKAYRKLAlkyHPDKN~~~--~A~ekFq~I~EAYeVLSDp~kRk 632 (1136)
T PTZ00341 571 PDTLFYDILGVGVNA----DMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKK 632 (1136)
T ss_pred CCCChHHHcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHhCCHHHHH
Confidence 457999999999999 999999999999999999999875 37889999999999999999985
No 42
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2e-15 Score=114.89 Aligned_cols=64 Identities=36% Similarity=0.609 Sum_probs=58.4
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||++++ +..+|+++|+++++++|||+++.+...+.+.|+.|++||++|+|+..|.
T Consensus 4 ~~~~~y~iLgv~~~a----s~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~ 67 (237)
T COG2214 4 DLLDYYEILGVPPNA----SLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA 67 (237)
T ss_pred hhhhHHHHhCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence 467999999999999 9999999999999999999998765358899999999999999998874
No 43
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.5e-15 Score=129.74 Aligned_cols=64 Identities=34% Similarity=0.578 Sum_probs=58.6
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ--GNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~--~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
+..++|.+|+|+++| |.++|++|||++++.|||||.. +.++.|++.|..|..||+||+||.+|.
T Consensus 7 ~e~e~Ya~LNlpkdA----t~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa 72 (546)
T KOG0718|consen 7 DEIELYALLNLPKDA----TDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA 72 (546)
T ss_pred chhhHHHHhCCCccc----CHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 456999999999999 9999999999999999999974 446679999999999999999999884
No 44
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.7e-15 Score=118.53 Aligned_cols=63 Identities=30% Similarity=0.533 Sum_probs=56.0
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..-|+|+||||++++ |..|||+|||+|++++||||++.. .+.++.|..|++||+.|+|+..|-
T Consensus 97 ~~fDPyEILGl~pga----s~~eIKkaYR~LSik~HPDK~~~~-~~~e~~~~~I~KAY~aLTD~~sre 159 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGA----SEKEIKKAYRRLSIKYHPDKQPPE-EGDEEFFEAIAKAYQALTDKKSRE 159 (230)
T ss_pred hcCCcHHhhCCCCCC----CHHHHHHHHHHhhhhhCCCcCCCc-chhHHHHHHHHHHHHHhcchhhHH
Confidence 345999999999999 999999999999999999998653 337789999999999999998764
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3e-15 Score=118.43 Aligned_cols=64 Identities=33% Similarity=0.571 Sum_probs=57.3
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG-NKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~-~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...++|+||||..+| |..+|++||++|++.||||+++. +...++++|+.|+.||.||+|..+|.
T Consensus 12 ~~~d~YevLGVer~a----~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~ 76 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDA----TDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRA 76 (264)
T ss_pred cccCHHHHhhhcccC----CHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345999999999999 99999999999999999999852 23469999999999999999998885
No 46
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.55 E-value=1.3e-14 Score=110.91 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=54.5
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH----HHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~----~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.+||+||||++.. .++..+|+++|++|++++|||+..+..+ .+.+.|..||+||++|+||.+|.
T Consensus 1 ~~yf~llgl~~~~--~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra 68 (171)
T PRK05014 1 MDYFTLFGLPARY--DIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRA 68 (171)
T ss_pred CCHHHHCCCCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHH
Confidence 3799999999964 4489999999999999999999754322 36789999999999999999875
No 47
>PHA03102 Small T antigen; Reviewed
Probab=99.53 E-value=1.2e-14 Score=109.19 Aligned_cols=61 Identities=28% Similarity=0.438 Sum_probs=53.8
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccccC
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 149 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~~ 149 (150)
...+|+||||+++|.. |..+||+|||++++++|||++++ .++|++|++||++|+|+.+|..
T Consensus 4 ~~~l~~vLGl~~~A~~--s~~eIKkAYr~la~~~HPDkgg~-----~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 4 SKELMDLLGLPRSAWG--NLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred HHHHHHHcCCCCCCCC--CHHHHHHHHHHHHHHHCcCCCch-----hHHHHHHHHHHHHHhhHHHhcc
Confidence 4578999999998755 89999999999999999999753 4799999999999999988753
No 48
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.51 E-value=3.3e-14 Score=108.20 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=54.1
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~--~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.+||+||||++.. .++..+|+++|++|++++|||++.+.. ..+...+..||+||+||+||.+|.
T Consensus 2 ~~yf~llgl~~~f--~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra 67 (166)
T PRK01356 2 QNYFQLLGLPQEY--NIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA 67 (166)
T ss_pred CCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5899999999963 449999999999999999999986432 234567889999999999999875
No 49
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=7.4e-14 Score=106.95 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=56.6
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~----~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||++|||++.. .++..+|+++|++|++++|||+..+.. ..+.+.|..||+||+||+||.+|.
T Consensus 2 ~~~~~F~l~~l~~~f--~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra 71 (173)
T PRK00294 2 GTPCHFALFDLQPSF--RLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA 71 (173)
T ss_pred CCCChhhhcCcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence 346899999999854 668999999999999999999975432 236788999999999999999885
No 50
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=8.9e-14 Score=106.77 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=54.5
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH----HHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~----~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..+||+||||++.. .++..+|+++|++|++++|||+.....+ .+.+.+..||+||.+|+||.+|.
T Consensus 5 ~~dyf~llglp~~f--~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra 73 (176)
T PRK03578 5 KDDHFSLFGLPARF--ALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA 73 (176)
T ss_pred CCCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence 36999999999954 4589999999999999999999764322 24566799999999999999875
No 51
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.48 E-value=7.5e-14 Score=100.34 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=48.7
Q ss_pred CCCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhc
Q 031943 79 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIK 142 (150)
Q Consensus 79 ~~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~ 142 (150)
.++..++|+||||++++ |.++|+++||+|++++|||++++ .+.|.+|++||++|.
T Consensus 61 ~Ms~~eAy~ILGv~~~A----s~~eIkkaYRrLa~~~HPDkgGs-----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTA----SKERIREAHKQLMLRNHPDNGGS-----TYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHh
Confidence 33567999999999999 99999999999999999999643 468899999999995
No 52
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.47 E-value=6.4e-14 Score=125.87 Aligned_cols=60 Identities=38% Similarity=0.619 Sum_probs=55.6
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.+||+||||++++ +..+||++||+|+++||||++++ ..+..+|+.|++||++|+||.+|.
T Consensus 2 ~DYYeVLGVs~dA----S~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEAYEVLSDP~KRa 61 (871)
T TIGR03835 2 RDYYEVLGIDRDA----DEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEANDVLSNPKKRA 61 (871)
T ss_pred CChhHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCCHHHHH
Confidence 4899999999999 99999999999999999999876 347889999999999999999885
No 53
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.47 E-value=7.5e-14 Score=113.40 Aligned_cols=61 Identities=36% Similarity=0.547 Sum_probs=53.4
Q ss_pred CCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c---hHHHHHHHHHHHHHHHHhcCc
Q 031943 80 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG---N---KEAAEAKFKEVMVSYEAIKQE 144 (150)
Q Consensus 80 ~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~---~---~~~a~~~f~~I~~AYevL~d~ 144 (150)
.+..++|+||||++++ |.++||++||+|+++||||+..+ + .+.++++|++|++||++|+..
T Consensus 197 ~~~~~ay~vLgv~~~a----s~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 197 PTLEDAYKVLGVSESD----DDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CcHHhHHHHcCCCCCC----CHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999 99999999999999999999632 1 245899999999999999864
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.41 E-value=2.4e-13 Score=113.69 Aligned_cols=64 Identities=31% Similarity=0.524 Sum_probs=58.4
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHHHhcCcccccC
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN--KEAAEAKFKEVMVSYEAIKQERKDMN 149 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~--~~~a~~~f~~I~~AYevL~d~~kR~~ 149 (150)
.+|||.||||.++| +..||.+|||++|.+||||-..+. +..|+.+|.-|..|-+||+||.+|+.
T Consensus 393 kRDYYKILGVkRnA----sKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrq 458 (504)
T KOG0624|consen 393 KRDYYKILGVKRNA----SKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQ 458 (504)
T ss_pred cchHHHHhhhcccc----cHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhh
Confidence 57999999999999 999999999999999999987654 34699999999999999999999974
No 55
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.2e-13 Score=113.55 Aligned_cols=61 Identities=36% Similarity=0.523 Sum_probs=57.0
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|+|.||||+.+. |.++||+.||++|...|||||.. +.|++.|+.|+.||++|+|+.+|.
T Consensus 234 ~~daYsvlGl~~d~----sd~~lKk~Yrk~A~LVhPDKn~~--~~A~Eafk~Lq~Afevig~~~kR~ 294 (490)
T KOG0720|consen 234 ILDAYSALGLPSDC----SDADLKKNYRKKAMLVHPDKNMI--PRAEEAFKKLQVAFEVIGDSVKRK 294 (490)
T ss_pred CCCchhhcCCCCCC----CHHHHHHHHHhhceEeCCCccCC--hhHHHHHHHHHHHHHHhcchhhhh
Confidence 67999999999988 99999999999999999999974 459999999999999999999885
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=9.2e-13 Score=105.77 Aligned_cols=61 Identities=30% Similarity=0.562 Sum_probs=55.5
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..|+|+||||+..+ +..+|.+|||+||+++|||++++.. +.+.|+.|..||++|.|...|.
T Consensus 32 ~enCYdVLgV~Rea----~KseIakAYRqLARrhHPDr~r~~e--~k~~F~~iAtayeilkd~e~rt 92 (329)
T KOG0722|consen 32 AENCYDVLGVAREA----NKSEIAKAYRQLARRHHPDRNRDPE--SKKLFVKIATAYEILKDNETRT 92 (329)
T ss_pred chhHHHHhhhhhhc----cHHHHHHHHHHHHHHhCCcccCCch--hhhhhhhhhcccccccchhhHH
Confidence 46999999999999 9999999999999999999998754 5689999999999999987664
No 57
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.9e-12 Score=99.63 Aligned_cols=69 Identities=26% Similarity=0.432 Sum_probs=63.3
Q ss_pred CCCCCCCCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943 74 PRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146 (150)
Q Consensus 74 ~~~~~~~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k 146 (150)
-.+++.|-..++|+||.|.|.. +.++||+.||+|++..|||+|+++.+.|...|--|.+||..|-|+..
T Consensus 44 lrpgstyfnLNpfeVLqIdpev----~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~ 112 (250)
T KOG1150|consen 44 LRPGSTYFNLNPFEVLQIDPEV----TDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKI 112 (250)
T ss_pred hcCCccccccChHHHHhcCCCC----CHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHH
Confidence 3456677889999999999998 99999999999999999999999988899999999999999999863
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.4e-12 Score=109.27 Aligned_cols=63 Identities=40% Similarity=0.622 Sum_probs=59.1
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..+||.||||...+ +..+||+||+++++.||||++.....+++.+|++|-+||.+|+||.+|.
T Consensus 372 Rkd~ykilGi~~~a----s~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~ 434 (486)
T KOG0550|consen 372 RKDWYKILGISRNA----SDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRV 434 (486)
T ss_pred hhhHHHHhhhhhhc----ccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHh
Confidence 56999999999999 9999999999999999999998876779999999999999999998875
No 59
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.6e-12 Score=102.16 Aligned_cols=63 Identities=41% Similarity=0.673 Sum_probs=55.8
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..++|.||||.+.| +..+|++||++++++||||+++.....+..+|++|.+||++|+|+.+|.
T Consensus 2 ~~d~~~~l~i~~~a----s~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~ 64 (306)
T KOG0714|consen 2 GKDYYKILGIARSA----SEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRK 64 (306)
T ss_pred cccHHHHhCccccc----cHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhh
Confidence 35899999999988 8889999999999999999987763346668999999999999998875
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.23 E-value=2.3e-11 Score=93.18 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=55.3
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~----~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
+.|||++|||++. ..++...|++.|+.|.+.+|||+..... ..+.+....||+||.+|+||.+|.
T Consensus 1 ~~nyF~lf~lp~~--F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA 69 (173)
T PRK01773 1 MNNPFALFDLPVD--FQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA 69 (173)
T ss_pred CCChHHhcCCCCC--CCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence 3689999999994 4679999999999999999999974432 346677899999999999999875
No 61
>PHA02624 large T antigen; Provisional
Probab=99.23 E-value=1.4e-11 Score=109.33 Aligned_cols=60 Identities=25% Similarity=0.387 Sum_probs=52.8
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..++|+||||++++.. +..+||+|||+++++||||++++ +++|++|+.||++|+|+.++.
T Consensus 10 ~~elyelLGL~~~A~g--s~~eIKkAYRkLAkkyHPDKgGd-----eekfk~Ln~AYevL~d~~k~~ 69 (647)
T PHA02624 10 SKELMDLLGLPMAAWG--NLPLMRKAYLRKCKEYHPDKGGD-----EEKMKRLNSLYKKLQEGVKSA 69 (647)
T ss_pred HHHHHHHcCCCCCCCC--CHHHHHHHHHHHHHHHCcCCCCc-----HHHHHHHHHHHHHHhcHHHhh
Confidence 4689999999997744 88999999999999999999753 579999999999999987764
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.15 E-value=2.4e-11 Score=104.07 Aligned_cols=63 Identities=25% Similarity=0.496 Sum_probs=56.0
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG----NKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~----~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.-|+|+||||+.++ +..+||++||+|+.++||||.+. ...+.++.++.|++||..|+|...|.
T Consensus 97 ~fDPyEILGI~~~t----s~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~re 163 (610)
T COG5407 97 GFDPYEILGIDQDT----SERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRE 163 (610)
T ss_pred CCChHHhhcccCCC----cHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34899999999999 99999999999999999999654 34568999999999999999987764
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.05 E-value=4.7e-10 Score=84.68 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc----hHHHHHHHHHHHHHHHHhcCccccc
Q 031943 98 PYTEAEIKTAFRAKAKEFHPDQNQGN----KEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 98 ~~s~~eIkkayr~la~~~HPDk~~~~----~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.++..+|+++|++|++++|||+.... ...+...|..||+||++|+||.+|.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra 56 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRA 56 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhH
Confidence 46889999999999999999985432 2347789999999999999999885
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=6.7e-09 Score=84.43 Aligned_cols=68 Identities=22% Similarity=0.452 Sum_probs=54.7
Q ss_pred CCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 80 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ-GNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 80 ~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~-~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
+...|+|.+|||+.-. ...+..+|.++.++.+.+||||+.. +....+.+.|+.|++||+||+|+.+|.
T Consensus 40 Wk~~DlYa~lgLskyR-~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~ 108 (379)
T COG5269 40 WKKVDLYALLGLSKYR-TKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRL 108 (379)
T ss_pred hhhhhHHHHhchHhhh-cCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHh
Confidence 3568999999998753 2237788888999999999999962 112237899999999999999998874
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.5e-08 Score=94.16 Aligned_cols=63 Identities=24% Similarity=0.405 Sum_probs=52.4
Q ss_pred CCCCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCc
Q 031943 78 ESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144 (150)
Q Consensus 78 ~~~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~ 144 (150)
..++..+.|+||.|+-+-...-..+.|+++|++||.+|||||||. ..++|..||+||+.|+..
T Consensus 1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE----GRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE----GREMFERVNKAYELLSSE 1338 (2235)
T ss_pred CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch----HHHHHHHHHHHHHHHHHH
Confidence 344667899999998664333355899999999999999999987 568999999999999843
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.1e-07 Score=73.41 Aligned_cols=56 Identities=21% Similarity=0.501 Sum_probs=48.5
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH-HhcC
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYE-AIKQ 143 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYe-vL~d 143 (150)
...+|.||||..++ +..+|+.+|..|++.+|||.+.... ....|..|.+||. ||+.
T Consensus 46 ~~e~fril~v~e~~----~adevr~af~~lakq~hpdsgs~~a--daa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGA----DADEVREAFHDLAKQVHPDSGSEEA--DAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccC----chhHHHHHHHHHHHHcCCCCCCccc--cHHHHHHHHHHHHHHHHH
Confidence 45899999999999 9999999999999999999875432 5678999999998 6653
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.6e-07 Score=64.03 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=47.5
Q ss_pred CCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCc
Q 031943 80 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144 (150)
Q Consensus 80 ~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~ 144 (150)
++....-.||||++++ +.+.||.|+|++....|||+.++. -.-.+||+|+++|...
T Consensus 53 Msr~EA~lIL~v~~s~----~k~KikeaHrriM~~NHPD~GGSP-----YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 53 MSRREAALILGVTPSL----DKDKIKEAHRRIMLANHPDRGGSP-----YLASKINEAKDLLEGT 108 (112)
T ss_pred cchHHHHHHhCCCccc----cHHHHHHHHHHHHHcCCCcCCCCH-----HHHHHHHHHHHHHhcc
Confidence 3556788999999988 999999999999999999998763 3345699999999754
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=5.8e-05 Score=56.88 Aligned_cols=66 Identities=20% Similarity=0.401 Sum_probs=52.9
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ----GNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~----~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||.++|..... .+++.-++--|....+++|||+.. .+...|.+...+||+||.+|+||-.|.
T Consensus 6 ~~~~ff~~Fg~e~~~--~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA 75 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSF--KIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARA 75 (168)
T ss_pred hHHHHHHHhccccCC--CCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 457899999988744 447777777999999999999942 223357788999999999999998774
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00011 Score=56.09 Aligned_cols=55 Identities=33% Similarity=0.523 Sum_probs=47.3
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--C-c---hHHHHHHHHHHHHHHHHh
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ--G-N---KEAAEAKFKEVMVSYEAI 141 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~--~-~---~~~a~~~f~~I~~AYevL 141 (150)
.+.|.+||+...+ +..+|+++|+++....|||+-. + . .+.+.+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~----~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKA----DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhh----hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999 9999999999999999999831 1 1 245889999999999865
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=97.12 E-value=0.00077 Score=58.83 Aligned_cols=45 Identities=31% Similarity=0.423 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHHHhcC
Q 031943 99 YTEAEIKTAFRAKAKEFHPDQNQGN------KEAAEAKFKEVMVSYEAIKQ 143 (150)
Q Consensus 99 ~s~~eIkkayr~la~~~HPDk~~~~------~~~a~~~f~~I~~AYevL~d 143 (150)
|+...||++||+.++.+||||.++. +=.|++.|-.+++|+.....
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~~ 450 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFNQ 450 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3889999999999999999997543 12477778888888876543
No 71
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.63 E-value=0.0048 Score=45.14 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=38.8
Q ss_pred CCCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcC
Q 031943 79 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQ 143 (150)
Q Consensus 79 ~~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d 143 (150)
.++......||||++.. +.++|.+.|..|-...+|+++++ .-.-.+|..|.+.|..
T Consensus 54 ~Mtl~EA~~ILnv~~~~----~~eeI~k~y~~Lf~~Nd~~kGGS-----fYLQSKV~rAKErl~~ 109 (127)
T PF03656_consen 54 GMTLDEARQILNVKEEL----SREEIQKRYKHLFKANDPSKGGS-----FYLQSKVFRAKERLEQ 109 (127)
T ss_dssp ---HHHHHHHHT--G------SHHHHHHHHHHHHHHT-CCCTS------HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCcc----CHHHHHHHHHHHHhccCCCcCCC-----HHHHHHHHHHHHHHHH
Confidence 46778999999999977 99999999999999999998865 2334557777776653
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0017 Score=49.61 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=48.1
Q ss_pred chhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH----HHHHHHHHHHHHHHHhcCccccc
Q 031943 84 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 84 ~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~----~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
+++.++|+...+ .+....++..|+.+.+.+|||+...... .+...+..++.||.+|.+|-.|.
T Consensus 2 ~~~~~~~~~~~f--~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra 68 (174)
T COG1076 2 DGFVLFGLPRAF--QIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRA 68 (174)
T ss_pred CcccccccHHHH--HHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 345566776644 3366789999999999999999754322 25678999999999999997764
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=94.67 E-value=0.1 Score=33.00 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=26.3
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHH
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAK 113 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~ 113 (150)
+..++|.+|||+++. +.+.|-.+|...+.
T Consensus 3 ~~~~Ay~~Lgi~~~~----~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 3 DVEEAYEILGIDEDT----DDDFIISAFQSKVN 31 (62)
T ss_pred CHHHHHHHhCcCCCC----CHHHHHHHHHHHHH
Confidence 557899999999888 99999999999988
No 74
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=86.02 E-value=1.9 Score=30.79 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHHhcCcc
Q 031943 100 TEAEIKTAFRAKAKEFHPDQNQGN---KEAAEAKFKEVMVSYEAIKQER 145 (150)
Q Consensus 100 s~~eIkkayr~la~~~HPDk~~~~---~~~a~~~f~~I~~AYevL~d~~ 145 (150)
+..+++.|-|.+-++.|||..... ...-++-++.|+.-.+.|..+.
T Consensus 7 ~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 7 SSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 678899999999999999985443 3345667888888888887654
No 75
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=85.50 E-value=1.1 Score=37.18 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHHHhcCccc
Q 031943 100 TEAEIKTAFRAKAKEFHPDQNQG---NKEAAEAKFKEVMVSYEAIKQERK 146 (150)
Q Consensus 100 s~~eIkkayr~la~~~HPDk~~~---~~~~a~~~f~~I~~AYevL~d~~k 146 (150)
+...|..+|+..++..||++... ..-...+.|++|.+||.+|++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~ 54 (335)
T KOG0724|consen 5 SEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEP 54 (335)
T ss_pred cHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc
Confidence 77889999999999999998642 112356789999999999998544
No 76
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=64.00 E-value=4.5 Score=18.12 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhc
Q 031943 130 KFKEVMVSYEAIK 142 (150)
Q Consensus 130 ~f~~I~~AYevL~ 142 (150)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4777888888774
No 77
>COG2879 Uncharacterized small protein [Function unknown]
Probab=61.91 E-value=16 Score=23.58 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=21.4
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHH
Q 031943 107 AFRAKAKEFHPDQNQGNKEAAEAKFKEVMVS 137 (150)
Q Consensus 107 ayr~la~~~HPDk~~~~~~~a~~~f~~I~~A 137 (150)
-|-.-.++.|||+.+-. -++.|.+-++|
T Consensus 27 nYVehmr~~hPd~p~mT---~~EFfrec~da 54 (65)
T COG2879 27 NYVEHMRKKHPDKPPMT---YEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHhCcCCCccc---HHHHHHHHHHh
Confidence 57888999999998754 35777777665
No 78
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.67 E-value=15 Score=26.92 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=34.1
Q ss_pred CCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 031943 80 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG 122 (150)
Q Consensus 80 ~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~ 122 (150)
++....-.||+|++.. +.++|.+.|-.|-....+.++++
T Consensus 56 iTlqEa~qILnV~~~l----n~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPL----NREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred ccHHHHhhHhCCCCCC----CHHHHHHHHHHHHhccCcccCcc
Confidence 5677899999998866 99999999999999988888754
No 79
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=38.95 E-value=22 Score=29.15 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhcC
Q 031943 128 EAKFKEVMVSYEAIKQ 143 (150)
Q Consensus 128 ~~~f~~I~~AYevL~d 143 (150)
..++++||+|||+|+.
T Consensus 127 RRRLkKVNEAFE~LKR 142 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLKR 142 (284)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4678999999999973
No 80
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=34.94 E-value=13 Score=23.54 Aligned_cols=29 Identities=31% Similarity=0.644 Sum_probs=19.4
Q ss_pred cchhhhcCcCcCCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEI-KTAFRAKAKEFHPDQ 119 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eI-kkayr~la~~~HPDk 119 (150)
.+++++||+++ +++ ......+....|||=
T Consensus 6 ~~~~~i~G~~~--------~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 6 DNFYEIFGYSP--------EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp THHHHHHTS-H--------HHHTCBEHHHHHHHB-TTT
T ss_pred HHHHHHhCCCH--------HHhccCCHHHHHhhcCHHH
Confidence 56899999965 345 455666777889984
No 81
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=30.36 E-value=84 Score=19.53 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=20.5
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQN 120 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~ 120 (150)
.-||+||+++.-. ++=+..|-+- ++-||+..
T Consensus 11 nAFY~vl~~~nLt------eeQrn~yI~~-lKddPs~s 41 (54)
T PF02216_consen 11 NAFYEVLHMPNLT------EEQRNGYIQS-LKDDPSRS 41 (54)
T ss_dssp HHHHHHHCSTTS-------HHHHHHHHHH-HHH-GCCH
T ss_pred HHHHHHHcCCCcC------HHHHHhHHHH-HhhChHHH
Confidence 3589999997743 5556777654 45689874
No 82
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=30.08 E-value=65 Score=17.26 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 031943 100 TEAEIKTAFRAKAKEFHP 117 (150)
Q Consensus 100 s~~eIkkayr~la~~~HP 117 (150)
..++.+.+-|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 447788899999999993
No 83
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=25.40 E-value=1.2e+02 Score=23.56 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=18.1
Q ss_pred CcCCCCCCCHHHHHHHHHHHHHHhC
Q 031943 92 DRLRKAPYTEAEIKTAFRAKAKEFH 116 (150)
Q Consensus 92 ~~~a~~~~s~~eIkkayr~la~~~H 116 (150)
+++| |.+||..|+..+..+|-
T Consensus 1 S~~A----SfeEIq~Arn~ll~~y~ 21 (194)
T PF11833_consen 1 SEDA----SFEEIQAARNRLLAQYA 21 (194)
T ss_pred CCCC----CHHHHHHHHHHHHHHhc
Confidence 3566 99999999999999993
No 84
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=24.80 E-value=1.6e+02 Score=17.42 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943 103 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146 (150)
Q Consensus 103 eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k 146 (150)
-....++..++.-||+.+ ..+....|...|..|++..+
T Consensus 10 ~f~~~~~~~~~~~~~~~~------~~~i~~~~~~~W~~l~~~~k 47 (66)
T cd00084 10 LFSQEHRAEVKAENPGLS------VGEISKILGEMWKSLSEEEK 47 (66)
T ss_pred HHHHHHHHHHHHHCcCCC------HHHHHHHHHHHHHhCCHHHH
Confidence 345667777888888843 34567778888888877543
No 85
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=23.94 E-value=1.2e+02 Score=25.97 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=34.4
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIK 142 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~ 142 (150)
..++|+.|||++.. =..+|-..-...+.+.-|-.-.-+.+.-......+..+...|.
T Consensus 249 R~~Fy~alGld~~~----yD~~Vi~~Tn~~a~rvFP~~Ldvd~P~F~~~L~~~~~~n~~l~ 305 (351)
T CHL00185 249 RSDFYAAIGLDARQ----FDMHVIRKTNESAARLFPVVLDVDNPKFFKYLDQCACANLKLI 305 (351)
T ss_pred hHHHHHHhCCCHHH----hhHHHHHHhhHHHHhhCCeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 45899999999876 4455555556667777787643222224444444555554443
No 86
>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair]
Probab=22.68 E-value=87 Score=28.41 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCC
Q 031943 7 EEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHH 49 (150)
Q Consensus 7 ~~~~r~~r~~~~q~~~~~er~~~~~~~~~~~~~~~~~g~~~~~ 49 (150)
+.++|-++..-.+...+++|.+|++.+++--..-|..|.+++.
T Consensus 169 ~~~~R~e~~~~~r~~krr~rr~~e~e~~~Il~eYy~~gt~~g~ 211 (587)
T KOG2475|consen 169 ESRQRLEEEIDQRASKRRERRKWEKERRTILFEYYESGTWHGS 211 (587)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcceeecC
Confidence 3444444444455666778888887776554444444444444
No 87
>PF04328 DUF466: Protein of unknown function (DUF466); InterPro: IPR007423 This is a small bacterial protein of unknown function.
Probab=21.75 E-value=2.3e+02 Score=18.07 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHH
Q 031943 106 TAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVS 137 (150)
Q Consensus 106 kayr~la~~~HPDk~~~~~~~a~~~f~~I~~A 137 (150)
..|-.-....|||+.+-+. .+.|..-+++
T Consensus 26 e~Yv~H~~~~HP~~p~ms~---~eF~r~r~~~ 54 (65)
T PF04328_consen 26 ERYVEHMRRHHPDEPPMSE---REFFRERQDA 54 (65)
T ss_pred HHHHHHHHHHCcCCCCCCH---HHHHHHHHHH
Confidence 3677888899999976543 3556554443
No 88
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=21.62 E-value=1.1e+02 Score=18.34 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943 106 TAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146 (150)
Q Consensus 106 kayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k 146 (150)
+..+..++.-||+.. ..+..+.|...|..|++..+
T Consensus 13 ~~~r~~~~~~~p~~~------~~~i~~~~~~~W~~ls~~eK 47 (66)
T cd01390 13 QEQRPKLKKENPDAS------VTEVTKILGEKWKELSEEEK 47 (66)
T ss_pred HHHHHHHHHHCcCCC------HHHHHHHHHHHHHhCCHHHH
Confidence 345666667788843 34677778888888887544
No 89
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=21.29 E-value=2.7e+02 Score=20.60 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 031943 7 EEMERVERIRRMQSVFNRERNKYKKSYES 35 (150)
Q Consensus 7 ~~~~r~~r~~~~q~~~~~er~~~~~~~~~ 35 (150)
++.+|.+.-++|.+.+...|...+..|.-
T Consensus 46 eee~Rk~k~~k~eaERe~mRq~IRdKY~l 74 (139)
T PF05835_consen 46 EEEERKAKHAKMEAEREKMRQHIRDKYGL 74 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34455555555666666777777666653
No 90
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=21.22 E-value=1.2e+02 Score=19.09 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943 105 KTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146 (150)
Q Consensus 105 kkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k 146 (150)
.+..+..++.-||+.. ..+..+.|.+.|..|++..+
T Consensus 13 ~~~~r~~~~~~~p~~~------~~eisk~l~~~Wk~ls~~eK 48 (72)
T cd01388 13 SKRHRRKVLQEYPLKE------NRAISKILGDRWKALSNEEK 48 (72)
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHHcCCHHHH
Confidence 4556677777899853 34667778888888887654
No 91
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=20.33 E-value=1.6e+02 Score=21.99 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q 031943 127 AEAKFKEVMVSYE 139 (150)
Q Consensus 127 a~~~f~~I~~AYe 139 (150)
..+.|..+|.+|+
T Consensus 92 ~~~~L~~lN~~Y~ 104 (158)
T TIGR03180 92 TRAALLEGNAAYE 104 (158)
T ss_pred HHHHHHHHHHHHH
Confidence 5667888999986
Done!