Query 031943
Match_columns 150
No_of_seqs 231 out of 1831
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:50:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ej7_A HCG3 gene; HCG3 protein 99.8 1.1E-20 3.7E-25 126.6 7.5 64 81-148 7-70 (82)
2 2yua_A Williams-beuren syndrom 99.8 4.3E-20 1.5E-24 128.1 8.0 65 79-148 13-77 (99)
3 2dn9_A DNAJ homolog subfamily 99.8 2.9E-20 1E-24 123.7 6.6 63 81-148 5-67 (79)
4 2ys8_A RAB-related GTP-binding 99.8 2.8E-20 9.6E-25 127.2 6.6 63 82-150 26-88 (90)
5 2dmx_A DNAJ homolog subfamily 99.8 2.6E-20 8.9E-25 127.4 6.3 64 81-148 7-70 (92)
6 2lgw_A DNAJ homolog subfamily 99.8 5.4E-20 1.8E-24 127.9 6.5 63 82-148 1-63 (99)
7 2ctp_A DNAJ homolog subfamily 99.8 7.6E-20 2.6E-24 121.5 6.6 62 81-148 5-66 (78)
8 1wjz_A 1700030A21RIK protein; 99.8 7.9E-20 2.7E-24 125.2 6.7 65 80-148 13-82 (94)
9 2ctr_A DNAJ homolog subfamily 99.8 1.1E-19 3.9E-24 123.5 7.3 62 81-148 5-66 (88)
10 1iur_A KIAA0730 protein; DNAJ 99.8 8.2E-20 2.8E-24 124.7 5.9 63 81-147 14-76 (88)
11 2ctw_A DNAJ homolog subfamily 99.8 3.1E-19 1.1E-23 125.9 8.5 63 81-148 15-77 (109)
12 1hdj_A Human HSP40, HDJ-1; mol 99.8 1.4E-19 4.9E-24 119.8 6.3 60 83-148 3-62 (77)
13 2och_A Hypothetical protein DN 99.8 2.1E-19 7E-24 118.0 5.9 60 81-148 6-65 (73)
14 2cug_A Mkiaa0962 protein; DNAJ 99.8 5.4E-19 1.9E-23 120.1 7.9 62 81-148 15-76 (88)
15 2ctq_A DNAJ homolog subfamily 99.8 2.3E-19 8E-24 127.1 6.1 63 81-148 18-80 (112)
16 2o37_A Protein SIS1; HSP40, J- 99.8 6.2E-19 2.1E-23 120.8 5.8 60 81-148 6-65 (92)
17 1bq0_A DNAJ, HSP40; chaperone, 99.7 3.5E-19 1.2E-23 124.3 2.3 61 83-148 3-63 (103)
18 1faf_A Large T antigen; J doma 99.7 1E-18 3.5E-23 116.8 4.2 60 81-149 9-70 (79)
19 2guz_A Mitochondrial import in 99.7 3E-18 1E-22 112.2 5.8 59 80-147 11-70 (71)
20 2l6l_A DNAJ homolog subfamily 99.7 4.2E-18 1.4E-22 126.5 6.7 64 81-148 8-76 (155)
21 2qsa_A DNAJ homolog DNJ-2; J-d 99.7 6.9E-18 2.4E-22 118.7 5.3 65 81-148 13-79 (109)
22 3apq_A DNAJ homolog subfamily 99.7 7.7E-18 2.6E-22 128.8 5.5 61 83-148 2-62 (210)
23 1gh6_A Large T antigen; tumor 99.7 1.5E-18 5.1E-23 123.6 0.8 59 82-149 7-67 (114)
24 2qwo_B Putative tyrosine-prote 99.7 3.5E-18 1.2E-22 117.5 2.6 57 83-143 33-91 (92)
25 3hho_A CO-chaperone protein HS 99.7 2.5E-17 8.5E-22 125.0 5.7 65 82-148 3-71 (174)
26 1n4c_A Auxilin; four helix bun 99.7 1.4E-17 4.9E-22 127.2 3.8 62 83-148 117-180 (182)
27 3ag7_A Putative uncharacterize 99.7 7.8E-18 2.7E-22 118.5 2.1 59 82-145 40-104 (106)
28 1fpo_A HSC20, chaperone protei 99.7 4.1E-17 1.4E-21 123.5 5.3 63 84-148 2-68 (171)
29 3bvo_A CO-chaperone protein HS 99.7 1.2E-16 4E-21 124.4 7.4 65 82-148 42-110 (207)
30 3lz8_A Putative chaperone DNAJ 99.6 1E-17 3.5E-22 138.3 0.0 63 80-148 25-87 (329)
31 2pf4_E Small T antigen; PP2A, 99.6 6.2E-17 2.1E-21 122.9 0.5 59 82-149 10-70 (174)
32 3uo3_A J-type CO-chaperone JAC 99.6 4.5E-16 1.5E-20 118.8 2.5 60 81-148 9-75 (181)
33 3apo_A DNAJ homolog subfamily 99.5 4.3E-15 1.5E-19 132.6 0.2 63 81-148 19-81 (780)
34 2guz_B Mitochondrial import in 99.2 1.6E-11 5.6E-16 79.0 5.2 55 81-144 2-59 (65)
35 2y4t_A DNAJ homolog subfamily 99.0 2.6E-10 8.8E-15 92.3 5.4 61 84-148 383-445 (450)
36 2pzi_A Probable serine/threoni 85.4 0.46 1.6E-05 41.4 2.8 44 84-140 630-675 (681)
37 1ckt_A High mobility group 1 p 32.9 78 0.0027 18.7 4.7 37 106-146 14-50 (71)
38 4a3n_A Transcription factor SO 25.9 82 0.0028 18.5 3.6 37 104-146 13-49 (71)
39 1hry_A Human SRY; DNA, DNA-bin 23.8 77 0.0026 19.0 3.2 36 105-146 16-51 (76)
40 1qqr_A Streptokinase domain B; 22.5 41 0.0014 23.9 1.8 32 84-119 33-64 (138)
41 3f27_D Transcription factor SO 22.4 1.1E+02 0.0039 18.6 3.9 36 105-146 18-53 (83)
42 2eqz_A High mobility group pro 22.2 97 0.0033 19.2 3.5 38 105-146 27-64 (86)
43 2d7l_A WD repeat and HMG-box D 20.8 73 0.0025 20.0 2.7 38 104-146 16-53 (81)
44 1wz6_A HMG-box transcription f 20.4 98 0.0034 18.9 3.2 36 105-146 19-54 (82)
No 1
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=126.59 Aligned_cols=64 Identities=38% Similarity=0.606 Sum_probs=59.6
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||++++ +.++||+||++|++++|||+++...+.+.+.|+.|++||++|+||.+|.
T Consensus 7 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 70 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQA----SSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70 (82)
T ss_dssp SSCCHHHHTTCCTTC----CHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred CCcCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 467999999999999 9999999999999999999998776678999999999999999999875
No 2
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.3e-20 Score=128.13 Aligned_cols=65 Identities=29% Similarity=0.509 Sum_probs=58.5
Q ss_pred CCCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 79 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 79 ~~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.+...+||+||||++++ +.++||+||++|+++||||++++.. .+.+.|+.|++||+||+||.+|.
T Consensus 13 ~~~~~~~Y~vLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~ 77 (99)
T 2yua_A 13 SYSRTALYDLLGVPSTA----TQAQIKAAYYRQCFLYHPDRNSGSA-EAAERFTRISQAYVVLGSATLRR 77 (99)
T ss_dssp SSCSSHHHHHHTCCTTC----CHHHHHHHHHHHHHHSCTTTCSSCS-HHHHHHHHHHHHHHHTTSHHHHH
T ss_pred CCCccCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCH-HHHHHHHHHHHHHHHHCCHHHHH
Confidence 34667999999999999 9999999999999999999997544 38899999999999999998875
No 3
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-20 Score=123.68 Aligned_cols=63 Identities=35% Similarity=0.587 Sum_probs=57.4
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||++++ +..+|+++|++|++++|||++++.. .+.+.|+.|++||++|+||.+|.
T Consensus 5 ~~~~~y~iLgv~~~a----~~~~Ik~ayr~l~~~~HPD~~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~ 67 (79)
T 2dn9_A 5 SSGDYYQILGVPRNA----SQKEIKKAYYQLAKKYHPDTNKDDP-KAKEKFSQLAEAYEVLSDEVKRK 67 (79)
T ss_dssp CCSCHHHHHTCCTTC----CHHHHHHHHHHHHHHTCTTTCSSCT-THHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCH-HHHHHHHHHHHHHHHHCCHHHHH
Confidence 567999999999999 9999999999999999999987543 37899999999999999998875
No 4
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-20 Score=127.16 Aligned_cols=63 Identities=25% Similarity=0.359 Sum_probs=57.4
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccccCC
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMNS 150 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~~~ 150 (150)
..+||+||||++++ +.++||+||++|+++||||+++.. .+.+.|++|++||++|+||.+|+.+
T Consensus 26 ~~~~y~iLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~--~~~~~f~~i~~Ay~~L~d~~~R~~~ 88 (90)
T 2ys8_A 26 SKDSWDMLGVKPGA----SRDEVNKAYRKLAVLLHPDKCVAP--GSEDAFKAVVNARTALLKNIKSGPS 88 (90)
T ss_dssp CSSHHHHHTCCTTC----CHHHHHHHHHHHHHHHCTTTCCCT--THHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHHCCcccccCC
Confidence 47999999999999 999999999999999999998753 3788999999999999999998753
No 5
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-20 Score=127.43 Aligned_cols=64 Identities=39% Similarity=0.630 Sum_probs=59.3
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||++++ +.++||++|++|+++||||+++...+.+++.|+.|++||++|+||.+|.
T Consensus 7 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 70 (92)
T 2dmx_A 7 GMANYYEVLGVQASA----SPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70 (92)
T ss_dssp CCCCHHHHHTCCTTC----CTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCcCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 567999999999999 9999999999999999999998776678999999999999999998874
No 6
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.80 E-value=5.4e-20 Score=127.95 Aligned_cols=63 Identities=41% Similarity=0.665 Sum_probs=58.4
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
+.+||+||||++++ |.++||+||++|++++|||++++..+.+.+.|+.|++||++|+||.+|.
T Consensus 1 M~d~Y~iLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~ 63 (99)
T 2lgw_A 1 MASYYEILDVPRSA----SADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63 (99)
T ss_dssp CCCHHHHSSSCTTS----CHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 36899999999999 9999999999999999999998776678999999999999999998874
No 7
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=7.6e-20 Score=121.47 Aligned_cols=62 Identities=31% Similarity=0.562 Sum_probs=57.1
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||++++ +..+|+++|++|++++|||+++. +.+.+.|+.|++||++|+||.+|.
T Consensus 5 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~ 66 (78)
T 2ctp_A 5 SSGDYYEILGVSRGA----SDEDLKKAYRRLALKFHPDKNHA--PGATEAFKAIGTAYAVLSNPEKRK 66 (78)
T ss_dssp CSCCHHHHHTCCTTC----CHHHHHHHHHHHHTTSCTTTCSS--HHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCHHHHH
Confidence 567999999999999 99999999999999999999875 348899999999999999998875
No 8
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.80 E-value=7.9e-20 Score=125.21 Aligned_cols=65 Identities=22% Similarity=0.381 Sum_probs=58.3
Q ss_pred CCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHHhcCccccc
Q 031943 80 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN-----KEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 80 ~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~-----~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
+...+||+||||++++ +..+||+||++|+++||||+++.. .+.+.+.|+.|++||+||+||.+|.
T Consensus 13 ~~~~~~y~iLgv~~~a----s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 82 (94)
T 1wjz_A 13 TLKKDWYSILGADPSA----NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK 82 (94)
T ss_dssp SSCSCHHHHTTCCTTC----CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred CCCCChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 3567999999999999 999999999999999999998642 2458899999999999999999875
No 9
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=123.46 Aligned_cols=62 Identities=35% Similarity=0.634 Sum_probs=57.1
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||++++ +.++||++|++|++++|||+++. +.+.+.|+.|++||++|+||.+|.
T Consensus 5 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~~L~d~~~R~ 66 (88)
T 2ctr_A 5 SSGSYYDILGVPKSA----SERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRRK 66 (88)
T ss_dssp CCCSHHHHHTCCTTC----CHHHHHHHHHHHHHHTCTTTCCS--HHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred CCCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHHHCCHHHHH
Confidence 567999999999999 99999999999999999999885 448899999999999999998874
No 10
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.79 E-value=8.2e-20 Score=124.68 Aligned_cols=63 Identities=24% Similarity=0.258 Sum_probs=57.8
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD 147 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR 147 (150)
...++|+||||++++ |.++||+|||+|+++||||++++..+.+++.|+.|++||++|++...|
T Consensus 14 ~~~~~y~vLgv~~~a----s~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 14 ILKEVTSVVEQAWKL----PESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CHHHHHHHHHHTTSS----CSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 567999999999999 999999999999999999999887667899999999999999996543
No 11
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=3.1e-19 Score=125.92 Aligned_cols=63 Identities=37% Similarity=0.528 Sum_probs=57.8
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||++++ +.++||+||++|++++|||++++.. .+.+.|+.|++||+||+||.+|.
T Consensus 15 ~~~~~Y~vLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~ 77 (109)
T 2ctw_A 15 SGESLYHVLGLDKNA----TSDDIKKSYRKLALKYHPDKNPDNP-EAADKFKEINNAHAILTDATKRN 77 (109)
T ss_dssp CSCCHHHHHTCCTTC----CHHHHHHHHHHHHHHSCTTTSTTCH-HHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCcH-HHHHHHHHHHHHHHHHcCHHHHH
Confidence 457999999999999 9999999999999999999998654 48899999999999999998875
No 12
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.79 E-value=1.4e-19 Score=119.84 Aligned_cols=60 Identities=40% Similarity=0.678 Sum_probs=55.2
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.+||+||||++++ |.++|++||++|++++|||++++. .+.+.|+.|++||++|+||.+|.
T Consensus 3 ~~~y~iLgv~~~a----s~~~Ik~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~~L~d~~~R~ 62 (77)
T 1hdj_A 3 KDYYQTLGLARGA----SDEEIKRAYRRQALRYHPDKNKEP--GAEEKFKEIAEAYDVLSDPRKRE 62 (77)
T ss_dssp CCSHHHHTCCTTC----CHHHHHHHHHHHHHTTCTTTCCCT--THHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHHCCHHHHH
Confidence 4899999999999 999999999999999999998753 37899999999999999998875
No 13
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.78 E-value=2.1e-19 Score=118.04 Aligned_cols=60 Identities=33% Similarity=0.605 Sum_probs=55.0
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||++++ |..+|+++|++|++++|||++++. .+.|+.|++||++|+||.+|.
T Consensus 6 ~~~~~y~iLgl~~~a----~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Ay~~L~d~~~R~ 65 (73)
T 2och_A 6 KETGYYDVLGVKPDA----SDNELKKAYRKMALKFHPDKNPDG----AEQFKQISQAYEVLSDEKKRQ 65 (73)
T ss_dssp CCCCHHHHHTCCTTC----CHHHHHHHHHHHHHHTCTTTCTTC----HHHHHHHHHHHHHHTSHHHHH
T ss_pred CCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCcCH----HHHHHHHHHHHHHHCCHHHHH
Confidence 456899999999999 999999999999999999999763 578999999999999999874
No 14
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=5.4e-19 Score=120.06 Aligned_cols=62 Identities=35% Similarity=0.614 Sum_probs=56.6
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||++++ +.++||++|++|++++|||+++.. .+.+.|+.|++||++|+||.+|.
T Consensus 15 ~~~d~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~--~~~~~f~~i~~Ay~~L~d~~~R~ 76 (88)
T 2cug_A 15 LDFDPYRVLGVSRTA----SQADIKKAYKKLAREWHPDKNKDP--GAEDRFIQISKAYEILSNEEKRT 76 (88)
T ss_dssp SSSCHHHHHTCCTTC----CHHHHHHHHHHHHHHSCTTTCCST--THHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCh--hHHHHHHHHHHHHHHHCCHHHHH
Confidence 356999999999999 999999999999999999998763 37899999999999999998874
No 15
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-19 Score=127.05 Aligned_cols=63 Identities=27% Similarity=0.460 Sum_probs=57.5
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||++++ +.++||+||++|++++|||++++.. .+.+.|+.|++||+||+||.+|.
T Consensus 18 ~~~d~Y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~vL~d~~~R~ 80 (112)
T 2ctq_A 18 DTEDYYTLLGCDELS----SVEQILAEFKVRALECHPDKHPENP-KAVETFQKLQKAKEILTNEESRA 80 (112)
T ss_dssp CCCCHHHHTTCCTTS----CHHHHHHHHHHHHHTTCTTTCTTCS-THHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCcH-HHHHHHHHHHHHHHHHCCHHHHH
Confidence 457999999999999 9999999999999999999997543 38899999999999999999875
No 16
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.76 E-value=6.2e-19 Score=120.77 Aligned_cols=60 Identities=30% Similarity=0.592 Sum_probs=54.9
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||++++ |.++|+++|++|++++|||++++. .+.|+.|++||++|+||.+|.
T Consensus 6 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~i~~Ay~~L~d~~~R~ 65 (92)
T 2o37_A 6 KETKLYDLLGVSPSA----NEQELKKGYRKAALKYHPDKPTGD----TEKFKEISEAFEILNDPQKRE 65 (92)
T ss_dssp SCCHHHHHHTCCTTC----CHHHHHHHHHHHHHHHCTTSTTCC----HHHHHHHHHHHHHHTSHHHHH
T ss_pred cCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCh----HHHHHHHHHHHHHHCCHHHHH
Confidence 456899999999999 999999999999999999999764 469999999999999998875
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.74 E-value=3.5e-19 Score=124.29 Aligned_cols=61 Identities=41% Similarity=0.738 Sum_probs=55.7
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.+||+||||++++ |.++||++|++|++++|||++++.. .+++.|+.|++||++|+||.+|.
T Consensus 3 ~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~-~a~~~f~~i~~Ay~~L~d~~~R~ 63 (103)
T 1bq0_A 3 QDYYEILGVSKTA----EEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQKRA 63 (103)
T ss_dssp CCSTTTTSSCSSC----CHHHHHHHHHHHHTTTCTTTCTTTC-THHHHHHHHTTTTTSTTCSHHHH
T ss_pred CCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCcH-HHHHHHHHHHHHHHHHCCHHHHH
Confidence 5899999999999 9999999999999999999987543 37899999999999999998875
No 18
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.74 E-value=1e-18 Score=116.81 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=54.0
Q ss_pred CccchhhhcCcCcC--CCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccccC
Q 031943 81 SLSHHYSVLGLDRL--RKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 149 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~--a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~~ 149 (150)
...++|+||||+++ + |..+||+|||+|++++|||++++ .+.|++|++||++|+|+.+|..
T Consensus 9 ~~~~~y~iLgl~~~~~a----~~~eIk~aYr~la~~~HPDk~~~-----~~~f~~i~~AYe~L~~~~~r~~ 70 (79)
T 1faf_A 9 DKERLLELLKLPRQLWG----DFGRMQQAYKQQSLLLHPDKGGS-----HALMQELNSLWGTFKTEVYNLR 70 (79)
T ss_dssp HHHHHHHHHTCCSSSTT----CHHHHHHHHHHHHHHSSGGGSCC-----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHcCCCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHHhhHHHHHH
Confidence 34689999999998 8 99999999999999999999864 4789999999999999987754
No 19
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3e-18 Score=112.24 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=52.8
Q ss_pred CCccchhhhcCcCc-CCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccc
Q 031943 80 YSLSHHYSVLGLDR-LRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD 147 (150)
Q Consensus 80 ~~~~~~Y~iLGl~~-~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR 147 (150)
++..++|+||||++ ++ |.++|+++||+|++++|||++++ .+.|++|++||++|+++..|
T Consensus 11 m~~~~~y~iLgl~~~~a----~~~eIk~ayr~l~~~~HPDk~g~-----~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 11 MNSKEALQILNLTENTL----TKKKLKEVHRKIMLANHPDKGGS-----PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CCHHHHHHHTTCCTTTC----CHHHHHHHHHHHHHHHCGGGTCC-----HHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHcCCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHhhhhhc
Confidence 35679999999998 68 99999999999999999999753 46999999999999998765
No 20
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-18 Score=126.54 Aligned_cols=64 Identities=22% Similarity=0.399 Sum_probs=57.5
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK-----EAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~-----~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||++++ +.++||+||++|++++|||+++... +.+.+.|+.|++||++|+||.+|.
T Consensus 8 ~~~~~y~iLgv~~~a----~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~ 76 (155)
T 2l6l_A 8 PKKDWYSILGADPSA----NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKR 76 (155)
T ss_dssp CCSHHHHHHTCCTTC----CHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHC
T ss_pred CCCChhHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 457999999999999 9999999999999999999986542 347899999999999999999885
No 21
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.71 E-value=6.9e-18 Score=118.69 Aligned_cols=65 Identities=29% Similarity=0.592 Sum_probs=57.2
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG--NKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~--~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||++++ +|.++||+||++|++++|||++++ ..+.+.+.|+.|++||++|+||.+|.
T Consensus 13 ~~~~~y~iLgv~~~a---~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~ 79 (109)
T 2qsa_A 13 GLENCYDVLEVNREE---FDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT 79 (109)
T ss_dssp TTSCHHHHTTCCGGG---CCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHcCCCCCC---CCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 357999999999875 489999999999999999999875 23458899999999999999999874
No 22
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.70 E-value=7.7e-18 Score=128.79 Aligned_cols=61 Identities=33% Similarity=0.579 Sum_probs=56.2
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.+||+||||++++ |.++||+|||+|++++|||++++.. .+.+.|+.|++||++|+||.+|.
T Consensus 2 ~~~y~~l~~~~~a----~~~~ik~ay~~l~~~~HPD~~~~~~-~~~~~f~~i~~Ay~~L~~~~~r~ 62 (210)
T 3apq_A 2 QNFYSLLGVSKTA----SSREIRQAFKKLALKLHPDKNPNNP-NAHGDFLKINRAYEVLKDEDLRK 62 (210)
T ss_dssp CCHHHHHTCCTTC----CHHHHHHHHHHHHHHHCGGGCTTCT-THHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCh-HHHHHHHHHHHHHHHhCCHHHHH
Confidence 5899999999999 9999999999999999999997554 38899999999999999999875
No 23
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.70 E-value=1.5e-18 Score=123.62 Aligned_cols=59 Identities=29% Similarity=0.442 Sum_probs=54.0
Q ss_pred ccchhhhcCcCcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccccC
Q 031943 82 LSHHYSVLGLDRLRKAPYTE--AEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 149 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~--~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~~ 149 (150)
..++|+||||++++ +. .+||+|||+|++++|||++++ .++|++|++||+||+||.+|..
T Consensus 7 ~~~~Y~iLgv~~~a----s~~~~eIk~aYr~la~~~HPDk~~~-----~e~f~~I~~AYevL~d~~~R~~ 67 (114)
T 1gh6_A 7 SLQLMDLLGLERSA----WGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAH 67 (114)
T ss_dssp HHHHHHHTTCCTTS----CSCHHHHHHHHHHTTTTCCTTTCCT-----TTTTHHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHcCCCCCC----CcCHHHHHHHHHHHHHHHCCCCCcc-----HHHHHHHHHHHHHHCCHHHHHH
Confidence 46899999999998 77 999999999999999999875 4789999999999999999864
No 24
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.70 E-value=3.5e-18 Score=117.49 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=51.4
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHHHHHHHhcC
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQ 143 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~--~~a~~~f~~I~~AYevL~d 143 (150)
.++|.+|||++.+ |..+||+|||+++++||||++++.. ..|++.|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~a----s~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLV----TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSS----SHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 4689999999999 9999999999999999999987653 2588999999999999975
No 25
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.68 E-value=2.5e-17 Score=124.97 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=56.0
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH----HHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~----~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..+||+||||++++ +++..+|+++||+|+++||||++++... .+.+.|..|++||+||+||.+|.
T Consensus 3 ~~d~Y~iLgl~~~a--~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~ 71 (174)
T 3hho_A 3 AMNYFELFGLPIQF--ELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRA 71 (174)
T ss_dssp -CCHHHHTTCCSSS--CCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 46999999999987 2349999999999999999999875532 37789999999999999999875
No 26
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.68 E-value=1.4e-17 Score=127.17 Aligned_cols=62 Identities=19% Similarity=0.388 Sum_probs=56.4
Q ss_pred cchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHHHHHHHhcCccccc
Q 031943 83 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 83 ~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~--~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
.++|+||||++++ |..+||+|||+|+++||||++++.. ..|++.|+.|++||+||+||.+|.
T Consensus 117 ~d~Y~vLgv~~~A----s~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~ 180 (182)
T 1n4c_A 117 ETKWKPVGMADLV----TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKP 180 (182)
T ss_dssp CCCCCCCCGGGGS----SHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cchhhcCCCCCCC----CHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhh
Confidence 5899999999999 9999999999999999999986543 248899999999999999999886
No 27
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.68 E-value=7.8e-18 Score=118.48 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=51.6
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---c---hHHHHHHHHHHHHHHHHhcCcc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG---N---KEAAEAKFKEVMVSYEAIKQER 145 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~---~---~~~a~~~f~~I~~AYevL~d~~ 145 (150)
..+||.|||++. + |..+||+|||+|++++||||+++ + ...|+++|+.|++||++|+|+.
T Consensus 40 ~~d~Y~vl~~~~-A----s~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-I----EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-C----SHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-C----CHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 368999999986 8 99999999999999999999753 1 1247899999999999999985
No 28
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.67 E-value=4.1e-17 Score=123.51 Aligned_cols=63 Identities=13% Similarity=0.310 Sum_probs=55.7
Q ss_pred chhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchH----HHHHHHHHHHHHHHHhcCccccc
Q 031943 84 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 84 ~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~----~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
+||+||||++++ .+|..+|+++||+|+++||||++++..+ .|.+.|+.|++||+||+||.+|.
T Consensus 2 d~y~lLgl~~~a--~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~ 68 (171)
T 1fpo_A 2 DYFTLFGLPARY--QLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA 68 (171)
T ss_dssp HHHHHTTCCSSS--CCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CHHHHCCCCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 799999999976 5599999999999999999999876432 46789999999999999999884
No 29
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=124.35 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=56.0
Q ss_pred ccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch----HHHHHHHHHHHHHHHHhcCccccc
Q 031943 82 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~----~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
..+||+||||++++ .+|..+||++||+|+++||||++++.. ..+.+.|+.|++||+||+||.+|.
T Consensus 42 ~~d~y~lLgv~~~~--~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~ 110 (207)
T 3bvo_A 42 TRDYFSLMDCNRSF--RVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRG 110 (207)
T ss_dssp TCCHHHHTTSCSCS--CCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 56999999999863 239999999999999999999987542 246789999999999999999884
No 30
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.65 E-value=1e-17 Score=138.32 Aligned_cols=63 Identities=37% Similarity=0.638 Sum_probs=0.0
Q ss_pred CCccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 80 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 80 ~~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
+...+||+||||+++| |.++||+|||+|+++||||++++. .|+++|++|++||++|+||.+|.
T Consensus 25 m~~~d~Y~vLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~--~a~~~f~~i~~Ay~vL~d~~~R~ 87 (329)
T 3lz8_A 25 MELKDYYAILGVQPTD----DLKTIKTAYRRLARKYHPDVSKEN--DAEAKFKDLAEAWEVLKDEQRRA 87 (329)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCCCCCCCh--HHHHHHHHHHHHHHHhhhhhhhc
Confidence 4567999999999999 999999999999999999998753 48899999999999999999885
No 31
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.61 E-value=6.2e-17 Score=122.90 Aligned_cols=59 Identities=29% Similarity=0.432 Sum_probs=51.0
Q ss_pred ccchhhhcCcCcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCcccccC
Q 031943 82 LSHHYSVLGLDRLRKAPYT--EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN 149 (150)
Q Consensus 82 ~~~~Y~iLGl~~~a~~~~s--~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~~ 149 (150)
..++|+||||++++ + .++||+|||+|++++|||++++ ++.|++|++||++|+||.+|..
T Consensus 10 ~~d~Y~vLGl~~~a----s~~~~eIKkAYRkLa~~~HPDk~~~-----~e~F~~I~~AYevLsdp~kR~~ 70 (174)
T 2pf4_E 10 SLQLMDLLGLERSA----WGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAH 70 (174)
T ss_dssp HHHHHHTTTCCGGG----TTCHHHHHHHHHHHGGGCSCC---C-----CTTTTHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHcCCCCCC----CcCHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHhCCHHHHHH
Confidence 46899999999998 6 7999999999999999999876 3689999999999999998863
No 32
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.57 E-value=4.5e-16 Score=118.80 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=53.3
Q ss_pred CccchhhhcC------cCc-CCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLG------LDR-LRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLG------l~~-~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||| +++ ++ |..+||++||+|++++|||++++ +.+.|+.|++||+||+||.+|.
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a----~~~eIk~aYr~la~~~HPDk~~~----a~~~f~~i~~AY~vL~dp~~R~ 75 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTI----DQSRLRKEYRQLQAQHHPDMAQQ----GSEQSSTLNQAYHTLKDPLRRS 75 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCC----CHHHHHHHHHHHHHTCCTTSCCS----CSSGGGSHHHHHHHHHSHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCC----CHHHHHHHHHHHHHHhCcCCCcc----HHHHHHHHHHHHHHHcChHHHH
Confidence 5679999994 654 56 99999999999999999999986 5688999999999999999875
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.47 E-value=4.3e-15 Score=132.56 Aligned_cols=63 Identities=32% Similarity=0.538 Sum_probs=34.9
Q ss_pred CccchhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccccc
Q 031943 81 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
...+||+||||+++| |.++||+|||+|+++||||++++.. .+.+.|+.|++||++|+||.+|.
T Consensus 19 ~~~~~y~~lg~~~~a----~~~~i~~ay~~l~~~~hpd~~~~~~-~~~~~f~~i~~ay~~L~~~~~r~ 81 (780)
T 3apo_A 19 HDQNFYSLLGVSKTA----SSREIRQAFKKLALKLHPDKNPNNP-NAHGDFLKINRAYEVLKDEDLRK 81 (780)
T ss_dssp ----CHHHHTCCTTC----CHHHHHHHHCC------------------------CTHHHHHHSHHHHH
T ss_pred CCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCh-HHHHHHHHHHHHHHHHcChHHHH
Confidence 457999999999999 9999999999999999999986543 48899999999999999999885
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.6e-11 Score=78.98 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=47.7
Q ss_pred CccchhhhcCcCcC---CCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCc
Q 031943 81 SLSHHYSVLGLDRL---RKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 144 (150)
Q Consensus 81 ~~~~~Y~iLGl~~~---a~~~~s~~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~ 144 (150)
+...+|.||||+++ + +.++|+++||+|+..+|||++++ ...+.+|+.|+++|...
T Consensus 2 t~~EA~~ILgv~~~~~~a----~~~~Ik~~yr~Lm~~nhPDkGGS-----~yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 2 TLDESCKILNIEESKGDL----NMDKINNRFNYLFEVNDKEKGGS-----FYLQSKVYRAAERLKWE 59 (65)
T ss_dssp CHHHHHHHTTCCGGGTCC----SHHHHHHHHHHHHHHTCGGGTCC-----HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCCcCcC----CHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHHHH
Confidence 34678999999998 7 99999999999999999999765 46778899999998643
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.01 E-value=2.6e-10 Score=92.30 Aligned_cols=61 Identities=30% Similarity=0.489 Sum_probs=55.8
Q ss_pred chhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch--HHHHHHHHHHHHHHHHhcCccccc
Q 031943 84 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQERKDM 148 (150)
Q Consensus 84 ~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk~~~~~--~~a~~~f~~I~~AYevL~d~~kR~ 148 (150)
++|.+||+...+ +..+|+++|+++++++|||+.+... +.++..|+.|++||++|+||.+|.
T Consensus 383 ~~y~~lg~~~~~----~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 383 DYYKILGVKRNA----KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CSGGGSCSSTTC----CTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred hHHHHhCCCccC----CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 899999999998 9999999999999999999987654 568999999999999999999985
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=85.38 E-value=0.46 Score=41.43 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=33.1
Q ss_pred chhhhcCcCcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHH
Q 031943 84 HHYSVLGLDRLRKAPYTE--AEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEA 140 (150)
Q Consensus 84 ~~Y~iLGl~~~a~~~~s~--~eIkkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYev 140 (150)
++|.|||++... .. .+|+++||+|++.-+++ .+++..|..|..|
T Consensus 630 ~~~~~lG~~~~~----~~lr~~~~~ayr~la~~~~~~---------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 630 STNHILGFPFTS----HGLRLGVEASLRSLARVAPTQ---------RHRYTLVDMANKV 675 (681)
T ss_dssp SSSEETTEESSH----HHHHHHHHHHHHHHHHHCSSH---------HHHHHHHHHHHHH
T ss_pred CCcccCCCCCCh----HHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHhccc
Confidence 488999996644 33 56999999999965444 3678888888765
No 37
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=32.89 E-value=78 Score=18.68 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943 106 TAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146 (150)
Q Consensus 106 kayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k 146 (150)
+..|..++.-||+...+ ..+..+.|.+.|..|++..+
T Consensus 14 ~~~r~~~~~~~p~~~~~----~~eisk~lg~~Wk~ls~~eK 50 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVN----FSEFSKKCSERWKTMSAKEK 50 (71)
T ss_dssp HHHHHHHHHHCTTCCCC----HHHHHHHHHHHHHTCCTTTS
T ss_pred HHHHHHHHHHCCCCCCc----HHHHHHHHHHHHhhCCHHHH
Confidence 44556667778987543 34677888888988887665
No 38
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=25.95 E-value=82 Score=18.48 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943 104 IKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146 (150)
Q Consensus 104 Ikkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k 146 (150)
..+.+|..++.-||+.. ..+..+.|.+.|..|++..+
T Consensus 13 f~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~~eK 49 (71)
T 4a3n_A 13 WAKDERKRLAQQNPDLH------NAELSKMLGKSWKALTLAEK 49 (71)
T ss_dssp HHHHHHHHHHTTCTTSC------HHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHCCCCC------HHHHHHHHHHHHhcCCHHHH
Confidence 35567777888888865 23566777888888876544
No 39
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=23.83 E-value=77 Score=19.01 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943 105 KTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146 (150)
Q Consensus 105 kkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k 146 (150)
.+.+|..++.-||+.... +..+.|.+.|..|++..+
T Consensus 16 ~~~~r~~~~~~~p~~~~~------eisk~lg~~Wk~ls~~eK 51 (76)
T 1hry_A 16 SRDQRRKMALENPRMRNS------EISKQLGYQWKMLTEAEK 51 (76)
T ss_dssp HHHHHHHHHHHCSCCSSS------HHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHCcCCCHH------HHHHHHHhHHHhCCHHHH
Confidence 455667777778987543 455667777777776543
No 40
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=22.45 E-value=41 Score=23.89 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=25.9
Q ss_pred chhhhcCcCcCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 031943 84 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQ 119 (150)
Q Consensus 84 ~~Y~iLGl~~~a~~~~s~~eIkkayr~la~~~HPDk 119 (150)
-++.+|-|...- +.++++++=-.+..++|||=
T Consensus 33 ~~l~~k~ig~~I----ts~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTI----TSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEE----EHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCccc----CHHHHHHHHHHHHHhcCCCc
Confidence 346666675554 99999999999999999984
No 41
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=22.40 E-value=1.1e+02 Score=18.56 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943 105 KTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146 (150)
Q Consensus 105 kkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k 146 (150)
...+|..++.-||+.. ..+..+.|.+.|..|++..+
T Consensus 18 ~~~~r~~~~~~~p~~~------~~eisk~lg~~Wk~ls~~eK 53 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH------NAELSKMLGKSWKALTLAEK 53 (83)
T ss_dssp HHHHHHHHHHHCSSSC------HHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHCCCCC------HHHHHHHHHHHHhcCCHHHH
Confidence 4566777788889864 23566777778877776543
No 42
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.19 E-value=97 Score=19.20 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943 105 KTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146 (150)
Q Consensus 105 kkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k 146 (150)
-...|..++.-||+...+ ..+..+.|.+.|..|++..+
T Consensus 27 ~~~~r~~~k~~~p~~~~~----~~eisk~lg~~Wk~ls~~eK 64 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVN----FAEFSKKCSERWKTMSGKEK 64 (86)
T ss_dssp HHHHHHHHHHHCTTSCCC----HHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHCCCCCCc----HHHHHHHHHHHHHhCCHHHH
Confidence 344566666778987543 34667778888888876544
No 43
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.81 E-value=73 Score=19.96 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943 104 IKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146 (150)
Q Consensus 104 Ikkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k 146 (150)
.-..+|..++.-||+.. + ..+..+.|-+.|..|++..+
T Consensus 16 F~~e~R~~ik~~~P~~~-~----~~eisK~lge~Wk~ls~eeK 53 (81)
T 2d7l_A 16 WLEENRSNILSDNPDFS-D----EADIIKEGMIRFRVLSTEER 53 (81)
T ss_dssp HHHHHHHHHHHHCTTCC-S----HHHHHHHHHHHHSSSCHHHH
T ss_pred HHHHHHHHHHHHCCCCc-h----hHHHHHHHHHHHHcCCHHHH
Confidence 34567778888899975 2 34667778887877776543
No 44
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=20.37 E-value=98 Score=18.90 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHhcCccc
Q 031943 105 KTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 146 (150)
Q Consensus 105 kkayr~la~~~HPDk~~~~~~~a~~~f~~I~~AYevL~d~~k 146 (150)
.+.+|..++.-||+.... +..+.|.+.|..|++..+
T Consensus 19 ~~~~r~~~~~~~p~~~~~------eisk~lg~~Wk~ls~~eK 54 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDNR------GATKILADWWAVLDPKEK 54 (82)
T ss_dssp HHHHHHHHHHHCSSSCTT------HHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHCCCCCHH------HHHHHHHHHHhhCCHHHH
Confidence 455667777788986543 455667777777776543
Done!