BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031944
         (150 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
          Length = 525

 Score = 27.3 bits (59), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 2   SIGLIHSSQRTKLPIEAGRCNRIR--FIDYSAIQP 34
           S+GLI    R KL +E  RC+  +  F D SA  P
Sbjct: 401 SVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDP 435


>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
          Length = 750

 Score = 27.3 bits (59), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/16 (62%), Positives = 14/16 (87%)

Query: 41  GFRYPLANHLGNNCVN 56
           GFR+ LA+ LGN+C+N
Sbjct: 371 GFRFDLASVLGNSCLN 386


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.143    0.456 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,677,705
Number of Sequences: 62578
Number of extensions: 138164
Number of successful extensions: 429
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 3
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)