BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031944
         (150 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O23342|SECE1_ARATH Preprotein translocase subunit SECE1 OS=Arabidopsis thaliana
           GN=SECE1 PE=1 SV=1
          Length = 177

 Score = 36.2 bits (82), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 94  FLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLRR 148
           FL G   ++K IEWP FQ  L T  + L ++A   V L +V+    F+LA L  R
Sbjct: 115 FLSGVAEEVKEIEWPAFQKVLGTTGVVLGVIAGSSVVLLTVN----FLLAELSDR 165


>sp|P57152|SECE_BUCAI Preprotein translocase subunit SecE OS=Buchnera aphidicola subsp.
           Acyrthosiphon pisum (strain APS) GN=secE PE=3 SV=1
          Length = 127

 Score = 32.3 bits (72), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/58 (24%), Positives = 32/58 (55%)

Query: 89  KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLL 146
           K + L++V    +++ I WP ++ TL T  + + +   +   L S+DS +  ++A ++
Sbjct: 66  KDILLYIVMSKKEMQKIIWPKYKETLYTTFIVISVTIFISFILWSIDSVIFRLIAFII 123


>sp|Q8KA64|SECE_BUCAP Preprotein translocase subunit SecE OS=Buchnera aphidicola subsp.
           Schizaphis graminum (strain Sg) GN=secE PE=3 SV=1
          Length = 127

 Score = 32.0 bits (71), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/59 (23%), Positives = 36/59 (61%)

Query: 88  LKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLL 146
           +K++F+++    +++K I WP ++ TL T  + + +  L+ + L  +DS +  ++A ++
Sbjct: 65  VKNVFVYINASKNEMKKITWPQYKETLYTTFIIISVTILISLLLWGLDSIIFRLIAFII 123


>sp|Q1E5A9|LMBD1_COCIM Probable lysosomal cobalamin transporter OS=Coccidioides immitis
           (strain RS) GN=CIMG_02254 PE=3 SV=1
          Length = 584

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 60  RDYNQLTYNDD--IPEEPFWLSLVKDIIWALKSLFLFLVG 97
            +Y+++ Y DD     +PFW +    +++ L ++ LFLVG
Sbjct: 119 EEYDEVAYEDDGRFTRKPFWGAFKYTLVFILLTIILFLVG 158


>sp|Q57932|Y512_METJA Uncharacterized protein MJ0512 OS=Methanocaldococcus jannaschii
          (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
          NBRC 100440) GN=MJ0512 PE=4 SV=1
          Length = 237

 Score = 30.8 bits (68), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 12 TKLPIEAGRCNRI--RFIDYSAIQPVERILGGFRYP 45
          T +P+E G+C  I  R  +  +++ VE+++ G +YP
Sbjct: 54 TTIPLERGKCYEIFGRITEEKSVRIVEKVIKGVKYP 89


>sp|Q53I77|XPO6A_XENLA Exportin-6-A OS=Xenopus laevis GN=xpo6-a PE=1 SV=1
          Length = 1135

 Score = 29.6 bits (65), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%)

Query: 52  NNCVNSVGRDYNQLTYNDDIPEEPFWLSLVKDIIW----ALKSLFLFLVGQPSQLKHIEW 107
           +N +N++ RDY +L     +P+    L   K +I      L+ +   + G+ ++ + I  
Sbjct: 763 SNLLNALTRDY-RLLKGSSLPQRKGQLEATKRVICQTLGVLRDIVENISGEGTKSRQI-- 819

Query: 108 PGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALL 145
             +QS  ++A L+L L    I      +  LSF LAL 
Sbjct: 820 -CYQSLQESAQLSLTLFPAYIHQSDVTEEMLSFFLALF 856


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.140    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,766,896
Number of Sequences: 539616
Number of extensions: 2013557
Number of successful extensions: 5602
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5596
Number of HSP's gapped (non-prelim): 9
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)