Query 031944
Match_columns 150
No_of_seqs 24 out of 26
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 11:51:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dl8_C SECE; RECA-type ATPase 99.6 1.3E-16 4.3E-21 107.7 4.8 59 89-147 2-60 (65)
2 2zjs_E Preprotein translocase 99.6 6E-17 2E-21 107.5 1.8 58 88-145 2-59 (60)
3 3din_D Preprotein translocase 99.6 1E-16 3.5E-21 108.2 1.6 59 89-147 2-60 (65)
4 3j01_B Preprotein translocase 99.4 4.4E-15 1.5E-19 110.6 -1.2 57 90-146 56-112 (116)
5 3bo0_B Preprotein translocase 99.1 5.5E-11 1.9E-15 78.7 2.6 54 89-142 4-64 (65)
6 3mp7_B Preprotein translocase 35.4 24 0.00081 23.4 2.4 42 89-130 6-47 (61)
7 1m56_D Cytochrome C oxidase; m 33.3 23 0.00077 22.9 1.9 17 115-131 34-50 (51)
8 1rh5_B Preprotein translocase 31.3 31 0.0011 23.7 2.5 56 90-145 11-66 (74)
9 1qle_D Cytochrome AA3, ccytoch 29.2 23 0.00079 22.2 1.4 17 115-131 26-42 (43)
10 3d31_C Sulfate/molybdate ABC t 18.5 98 0.0033 23.6 3.3 23 107-129 81-103 (295)
No 1
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=99.64 E-value=1.3e-16 Score=107.70 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=31.7
Q ss_pred HHHHHHHhhCcccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 031944 89 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLR 147 (150)
Q Consensus 89 ksl~~Fl~Eqp~ELKkVeWPsf~eTlkTt~lVLVlV~vlivaLs~VDsaLs~llaliLR 147 (150)
+.+.+|+.|++.|+|||+|||++|+.++|++|+++++++++++..+|.++++++.+++.
T Consensus 2 ~k~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~v~i~~~~i~~vD~~~~~~~~~i~~ 60 (65)
T 3dl8_C 2 EKLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILS 60 (65)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999873
No 2
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=99.63 E-value=6e-17 Score=107.46 Aligned_cols=58 Identities=19% Similarity=0.466 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCcccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 031944 88 LKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALL 145 (150)
Q Consensus 88 ~ksl~~Fl~Eqp~ELKkVeWPsf~eTlkTt~lVLVlV~vlivaLs~VDsaLs~llali 145 (150)
++.+.+|+.|.+.|+|||+|||++|+.++|++|++++++++++++.+|.+++++++++
T Consensus 2 ~~~~~~f~~~v~~ElkKV~WPtr~e~~~~t~vViv~v~i~~~~~~~vD~~~~~~~~~i 59 (60)
T 2zjs_E 2 FARLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL 59 (60)
T ss_dssp ----------CCCCCCCCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred chHHHHHHHHHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999999999999999999999999999887653
No 3
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=99.61 E-value=1e-16 Score=108.15 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=49.6
Q ss_pred HHHHHHHhhCcccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 031944 89 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLLR 147 (150)
Q Consensus 89 ksl~~Fl~Eqp~ELKkVeWPsf~eTlkTt~lVLVlV~vlivaLs~VDsaLs~llaliLR 147 (150)
+.+.+|+.|++.|+|||+|||++|+.++|++|+++++++++++..+|.++++++.+++.
T Consensus 2 ~~~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~~~i~~~~i~~vD~~~~~~~~~i~~ 60 (65)
T 3din_D 2 EKLRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFK 60 (65)
T ss_dssp --------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999998873
No 4
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Probab=99.44 E-value=4.4e-15 Score=110.55 Aligned_cols=57 Identities=19% Similarity=0.378 Sum_probs=54.8
Q ss_pred HHHHHHhhCcccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Q 031944 90 SLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALLL 146 (150)
Q Consensus 90 sl~~Fl~Eqp~ELKkVeWPsf~eTlkTt~lVLVlV~vlivaLs~VDsaLs~llaliL 146 (150)
.+.+|+.|.+.|+|||+|||++||.++|++|+++++++++++..+|.++++++.+++
T Consensus 56 ~~~~F~kev~~ElkKV~WPtr~E~~~~T~vViv~vii~al~l~~vD~~~~~~v~~i~ 112 (116)
T 3j01_B 56 ATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTAVMSLILWGLDGILVRLVSFIT 112 (116)
T ss_dssp CTTTCSSSHHHHHHHHHTTTTTSCHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHhheeeCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999886
No 5
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=99.06 E-value=5.5e-11 Score=78.73 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=50.6
Q ss_pred HHHHHHHhhCcccccceecCCc----cchh---hhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 031944 89 KSLFLFLVGQPSQLKHIEWPGF----QSTL---KTATLTLVLVALLIVALSSVDSALSFIL 142 (150)
Q Consensus 89 ksl~~Fl~Eqp~ELKkVeWPsf----~eTl---kTt~lVLVlV~vlivaLs~VDsaLs~ll 142 (150)
+.+.+|+.|...|+|||.||++ +|+. ++|+++++++.+++.++..+|..+..++
T Consensus 4 ~~~~~f~~~~~~E~kkV~wptrKp~~~e~~~v~~~t~vv~~~v~~i~~~i~lid~~i~~~l 64 (65)
T 3bo0_B 4 KATVAFAREARTEVRKVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHC
T ss_pred chHHHHHHHHHHHHhheeccCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999 9999 9999999999999999999999888764
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=35.43 E-value=24 Score=23.42 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=32.3
Q ss_pred HHHHHHHhhCcccccceecCCccchhhhhHHHHHHHHHHHHH
Q 031944 89 KSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVA 130 (150)
Q Consensus 89 ksl~~Fl~Eqp~ELKkVeWPsf~eTlkTt~lVLVlV~vliva 130 (150)
..+.+|+.+...=+|+-+=|+++|=.+++-++.+-.+++-+.
T Consensus 6 e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~i 47 (61)
T 3mp7_B 6 ERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLI 47 (61)
T ss_dssp --CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888889999999999999888887766665443
No 7
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=33.33 E-value=23 Score=22.95 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHH
Q 031944 115 KTATLTLVLVALLIVAL 131 (150)
Q Consensus 115 kTt~lVLVlV~vlivaL 131 (150)
.+++++++++.+|++|+
T Consensus 34 ~gt~~~~~~ll~laif~ 50 (51)
T 1m56_D 34 WAAVVIVAALIFLALAN 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 35666677777777765
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=31.28 E-value=31 Score=23.72 Aligned_cols=56 Identities=18% Similarity=0.146 Sum_probs=41.3
Q ss_pred HHHHHHhhCcccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 031944 90 SLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFILALL 145 (150)
Q Consensus 90 sl~~Fl~Eqp~ELKkVeWPsf~eTlkTt~lVLVlV~vlivaLs~VDsaLs~llali 145 (150)
.+.+|+.|...=+|.-+=|+++|=.+.+-++.+-.++|-+.=+.+-.+...+-+.+
T Consensus 11 ~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIkli~ipIn~ii 66 (74)
T 1rh5_B 11 QLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIHVPATYIKGIL 66 (74)
T ss_dssp -CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44567788888888999999999999998888877777665555655555555544
No 9
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=29.16 E-value=23 Score=22.16 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHHH
Q 031944 115 KTATLTLVLVALLIVAL 131 (150)
Q Consensus 115 kTt~lVLVlV~vlivaL 131 (150)
..++++++++.+|++|+
T Consensus 26 ~gt~~~~~~ll~maif~ 42 (43)
T 1qle_D 26 WVSILSIAVLVFLALAN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 34556666666666654
No 10
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=18.48 E-value=98 Score=23.59 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=10.6
Q ss_pred cCCccchhhhhHHHHHHHHHHHH
Q 031944 107 WPGFQSTLKTATLTLVLVALLIV 129 (150)
Q Consensus 107 WPsf~eTlkTt~lVLVlV~vliv 129 (150)
|...-+|+.-++++.++..++.+
T Consensus 81 ~~~l~nTl~~~~~~~~l~~~lg~ 103 (295)
T 3d31_C 81 ISSIFLSLYAGFLATLLALLLGA 103 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555554444444444333
Done!