Query 031944
Match_columns 150
No_of_seqs 24 out of 26
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 11:51:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031944.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031944hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 34.2 25 0.0018 21.9 3.9 36 92-127 2-37 (56)
2 d2r6gf2 f.58.1.1 (F:261-504) M 25.5 36 0.0026 23.7 4.0 24 107-130 14-37 (244)
3 d1e5ea_ c.67.1.3 (A:) Methioni 18.0 51 0.0037 25.7 3.8 28 86-114 266-293 (394)
4 d1m56d_ f.23.8.1 (D:) Bacteria 17.7 43 0.0031 19.9 2.5 14 116-129 26-39 (42)
5 d3bexa2 c.55.1.13 (A:119-245) 17.0 1.3E+02 0.0097 19.5 5.5 54 88-141 31-84 (127)
6 d1qled_ f.23.8.1 (D:) Bacteria 15.7 39 0.0029 20.1 2.0 14 116-129 27-40 (43)
7 d1qgna_ c.67.1.3 (A:) Cystathi 12.0 92 0.0067 24.3 3.8 30 82-112 268-297 (398)
8 d1n8pa_ c.67.1.3 (A:) Cystathi 11.3 97 0.0071 24.0 3.7 26 88-113 264-289 (393)
9 d2ctza1 c.67.1.3 (A:1-421) O-a 10.5 1.1E+02 0.008 24.1 3.8 25 88-113 298-322 (421)
10 d1gc0a_ c.67.1.3 (A:) Methioni 9.7 1E+02 0.0073 24.1 3.2 27 85-112 264-290 (392)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=34.18 E-value=25 Score=21.86 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=29.5
Q ss_pred HHHHhhCcccccceecCCccchhhhhHHHHHHHHHH
Q 031944 92 FLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALL 127 (150)
Q Consensus 92 ~~Fl~Eqp~ELKkVeWPsf~eTlkTt~lVLVlV~vl 127 (150)
.+|+.|..+=+|.-+=|+++|=.+++.++-+=.++|
T Consensus 2 k~F~~es~Rvlk~~~KP~~~Ef~~ia~v~~iG~~i~ 37 (56)
T d1rh5b_ 2 KEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLL 37 (56)
T ss_dssp CHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999888776544443
No 2
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=25.50 E-value=36 Score=23.66 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=12.1
Q ss_pred cCCccchhhhhHHHHHHHHHHHHH
Q 031944 107 WPGFQSTLKTATLTLVLVALLIVA 130 (150)
Q Consensus 107 WPsf~eTlkTt~lVLVlV~vliva 130 (150)
|+++-++++.|++..+.++++++.
T Consensus 14 ~~~~~~~l~~t~~~~~~~~~~~~~ 37 (244)
T d2r6gf2 14 QKPFLAIFVWTVVFSLITVFLTVA 37 (244)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444444443
No 3
>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}
Probab=18.01 E-value=51 Score=25.69 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhCcccccceecCCccchh
Q 031944 86 WALKSLFLFLVGQPSQLKHIEWPGFQSTL 114 (150)
Q Consensus 86 ~~~ksl~~Fl~Eqp~ELKkVeWPsf~eTl 114 (150)
-.-..+.+||+++| +.++|-||+..+.-
T Consensus 266 ~nA~~lA~~L~~hp-~V~~V~yPgl~s~p 293 (394)
T d1e5ea_ 266 ENAMKVAEYLKSHP-AVEKVYYPGFEDHE 293 (394)
T ss_dssp HHHHHHHHHHHTCT-TEEEEECTTCSSST
T ss_pred HHHHHHHHHHhhcC-CccEEeCCCccccc
Confidence 34456889999998 68999999987754
No 4
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=17.72 E-value=43 Score=19.87 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHH
Q 031944 116 TATLTLVLVALLIV 129 (150)
Q Consensus 116 Tt~lVLVlV~vliv 129 (150)
++++.+++.+++++
T Consensus 26 ~~i~~i~~liflAi 39 (42)
T d1m56d_ 26 AAVVIVAALIFLAL 39 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 5
>d3bexa2 c.55.1.13 (A:119-245) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}
Probab=16.97 E-value=1.3e+02 Score=19.52 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCcccccceecCCccchhhhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 031944 88 LKSLFLFLVGQPSQLKHIEWPGFQSTLKTATLTLVLVALLIVALSSVDSALSFI 141 (150)
Q Consensus 88 ~ksl~~Fl~Eqp~ELKkVeWPsf~eTlkTt~lVLVlV~vlivaLs~VDsaLs~l 141 (150)
++-..+=|.+.-.+|+.++.+..++.+.+.+.-=+-.-+..-+.+.|+..+..+
T Consensus 31 ~~l~~~aL~~~Ta~Lp~~~~~~~~~~~g~~T~~ai~~G~~~g~~~~i~~~i~~~ 84 (127)
T d3bexa2 31 FFMMVHSLFRGTAKLPLVEVKPADFVVGKDTEENIRLGVVNGSVYALEGIIGRI 84 (127)
T ss_dssp HHHHHHHHHHTCSSCCCCCCCCCCSSSBSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhccccccccccccCCCHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445556667777888888888878888777777666666666777777776654
No 6
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=15.74 E-value=39 Score=20.10 Aligned_cols=14 Identities=14% Similarity=0.468 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHHH
Q 031944 116 TATLTLVLVALLIV 129 (150)
Q Consensus 116 Tt~lVLVlV~vliv 129 (150)
++++.+++.++|++
T Consensus 27 ~~i~~i~~liflAi 40 (43)
T d1qled_ 27 VSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 7
>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=12.02 E-value=92 Score=24.33 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhCcccccceecCCccc
Q 031944 82 KDIIWALKSLFLFLVGQPSQLKHIEWPGFQS 112 (150)
Q Consensus 82 k~~~~~~ksl~~Fl~Eqp~ELKkVeWPsf~e 112 (150)
+...-.-..+.+||+++| +.++|.||+..+
T Consensus 268 ~~~~~nA~~lA~~L~~hp-~V~~V~yPgL~s 297 (398)
T d1qgna_ 268 QQQNSTALRMAEILEAHP-KVRHVYYPGLQS 297 (398)
T ss_dssp HHHHHHHHHHHHHHHTCT-TEEEEECTTSSS
T ss_pred HHHHHHHHHHHHHHHhCC-CeeecCCCCCCC
Confidence 334444567889999987 599999999875
No 8
>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.28 E-value=97 Score=24.05 Aligned_cols=26 Identities=15% Similarity=0.469 Sum_probs=21.6
Q ss_pred HHHHHHHHhhCcccccceecCCccch
Q 031944 88 LKSLFLFLVGQPSQLKHIEWPGFQST 113 (150)
Q Consensus 88 ~ksl~~Fl~Eqp~ELKkVeWPsf~eT 113 (150)
...+.+||..++...++|.||+..+-
T Consensus 264 A~~lA~~L~~~~~~V~~V~yP~l~~~ 289 (393)
T d1n8pa_ 264 ANKIAEFLAADKENVVAVNYPGLKTH 289 (393)
T ss_dssp HHHHHHHHTSCTTTEEEEECTTSTTS
T ss_pred HHHHHHHHHhccCcEEEEeccccccc
Confidence 35688999988888999999997763
No 9
>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}
Probab=10.47 E-value=1.1e+02 Score=24.11 Aligned_cols=25 Identities=24% Similarity=0.527 Sum_probs=20.6
Q ss_pred HHHHHHHHhhCcccccceecCCccch
Q 031944 88 LKSLFLFLVGQPSQLKHIEWPGFQST 113 (150)
Q Consensus 88 ~ksl~~Fl~Eqp~ELKkVeWPsf~eT 113 (150)
...+.+||+++|. .++|-||+..+-
T Consensus 298 A~~vA~~L~~hp~-V~~V~yPgL~s~ 322 (421)
T d2ctza1 298 TLHLAHWLLEQPQ-VAWVNYPGLPHH 322 (421)
T ss_dssp HHHHHHHHHTCTT-EEEEECTTSTTC
T ss_pred HHHHHhhhccCCC-eeEEecCCcCCC
Confidence 3467899999986 899999998764
No 10
>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}
Probab=9.70 E-value=1e+02 Score=24.05 Aligned_cols=27 Identities=37% Similarity=0.545 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhCcccccceecCCccc
Q 031944 85 IWALKSLFLFLVGQPSQLKHIEWPGFQS 112 (150)
Q Consensus 85 ~~~~ksl~~Fl~Eqp~ELKkVeWPsf~e 112 (150)
.-....+.+||+++| +.++|.||+..+
T Consensus 264 ~~nA~~lA~~L~~hp-~V~~V~yPgl~s 290 (392)
T d1gc0a_ 264 CANAQVLAEFLARQP-QVELIHYPGLAS 290 (392)
T ss_dssp HHHHHHHHHHHHTCT-TEEEEEEC----
T ss_pred HHHHHHHHHHHHhCC-CccEEeeccccC
Confidence 334557889999998 489999997654
Done!