BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031946
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of
Escherichia Coli, Northeast Structural Genomoics Target
Er58
Length = 184
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 88/142 (61%), Gaps = 6/142 (4%)
Query: 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
+ GGGG DGAI RAAGP LL+AC +V + CPTG A IT LPA V+HTVGP+
Sbjct: 28 LXGGGGVDGAIHRAAGPALLDACLKVRQQQG--DCPTGHAVITLAGDLPAKAVVHTVGPV 85
Query: 61 Y-GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119
+ G N + L+ AY NSL L AN+ +AFPAIS G+Y YP AA IA+ TV EF
Sbjct: 86 WRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFI 145
Query: 120 NDF---KEVHFVLFTDDLYNLW 138
++V+FV + ++ +L+
Sbjct: 146 TRHALPEQVYFVCYDEENAHLY 167
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1
Length = 235
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 81/126 (64%), Gaps = 8/126 (6%)
Query: 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
+LGGGG DG I RAAGP L + C + C TG+A+IT G++LPA +VIHTVGPI
Sbjct: 87 LLGGGGVDGCIHRAAGPLLTDECRTLQS------CKTGKAKITGGYRLPAKYVIHTVGPI 140
Query: 61 -YGV-TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 118
YG + + A LRS Y +SL L + ++ +AFP IS G++ YP E AA I ++T++E+
Sbjct: 141 AYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREW 200
Query: 119 ANDFKE 124
K+
Sbjct: 201 LEQHKD 206
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With
Adenosine-5- Diphosphoribose
Length = 214
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 71/151 (47%), Gaps = 10/151 (6%)
Query: 5 GGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVT 64
GG A+ +AAGPEL C ++ V R G A I+ KLP HVIH VGP +
Sbjct: 66 GGLAAALSKAAGPELQADCDQI--VKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGY 123
Query: 65 INPEAS--LRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKE---FA 119
P LR A + SL LA+ + IA PAIS G++ +P +S +KE F
Sbjct: 124 EAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFK 183
Query: 120 ND---FKEVHFVLFTDDLYNLWLEKARELLS 147
D KE++ V ++ + E + +
Sbjct: 184 KDGHCLKEIYLVDVSEKTVEAFAEAVKTVFK 214
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|C Chain C, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|D Chain D, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|2FXK|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|2FXK|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|3IID|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form A)
pdb|3IIF|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|B Chain B, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|C Chain C, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
Length = 211
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
GG + + G E +EA + + + A ++ G LPA VIH P++G
Sbjct: 65 GGEVGNTLEKKGGKEFVEAVLELRKKNGPLEVAG--AAVSAGHGLPAKFVIHCNSPVWGA 122
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATI---AIST--VKEF 118
E L KN L+LA ++ IAFP+I G +P + AA + AIS+ V
Sbjct: 123 D-KCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTM 181
Query: 119 ANDFKEVHFVLFTDDLYNLWLEKAREL 145
++ K V+FVLF + +++++ +L
Sbjct: 182 SSSIKTVYFVLFDSESIGIYVQEMAKL 208
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|B Chain B, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|C Chain C, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|D Chain D, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1
Length = 193
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
GG + + G E +EA + + + A ++ G LPA VIH P++G
Sbjct: 47 GGEVGSTLEKKGGKEFVEAVLELRKKNGPLEVAG--AAVSAGHGLPAKFVIHCNSPVWG- 103
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATI---AIST--VKEF 118
+ E L KN L+LA ++ IAFP+I G +P + AA + AIS+ V
Sbjct: 104 SDKCEELLEKTVKNCLALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTM 163
Query: 119 ANDFKEVHFVLFTDDLYNLWLEKAREL 145
++ K V+FVLF + +++++ +L
Sbjct: 164 SSSIKTVYFVLFDSESIGIYVQEMAKL 190
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
pdb|1ZR5|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
Length = 214
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 11 IRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEAS 70
+ + G E +EA + + + A ++ G LPA VIH P++G E
Sbjct: 75 LEKKGGKEFVEAVLELRKKNGPLEVAG--AAVSAGHGLPAKFVIHCNSPVWGAD-KCEEL 131
Query: 71 LRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATI---AIST--VKEFANDFKEV 125
L KN L+LA ++ IAFP+I G +P + AA + AIS+ V ++ K V
Sbjct: 132 LEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTV 191
Query: 126 HFVLFTDDLYNLWLEKAREL 145
+FVLF + +++++ +L
Sbjct: 192 YFVLFDSESIGIYVQEMAKL 211
>pdb|2XD7|A Chain A, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|B Chain B, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|C Chain C, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|D Chain D, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
Length = 193
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 10 AIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEA 69
A+ +A G E LE + + + EA ++ L A VIH P +G + E
Sbjct: 56 ALEKAGGKEFLETVKELRKSQGPLE--VAEAAVSQSSGLAAKFVIHCHIPQWG-SDKCEE 112
Query: 70 SLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAND-----FKE 124
L KN LS A+ ++ +AFP G C+P + AA + + + +D K
Sbjct: 113 QLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKN 172
Query: 125 VHFVLFTDDLYNLWLEKAREL 145
V+F+LF + +++++ +L
Sbjct: 173 VYFLLFDSESIGIYVQEMAKL 193
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
pdb|2DX6|B Chain B, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
Length = 159
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
G G GAI R GP + E C R+ ++ GEA +T LP +VIH + G
Sbjct: 30 GAGVAGAILRKGGPSIQEECDRIGKI------RVGEAAVTGAGNLPVRYVIHAA--VLGD 81
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFK 123
++R A K++L A ++ +AFP + G+ P E A + + +K+ A D
Sbjct: 82 EPASLETVRKATKSALEKAVELGLKTVAFPLLGTGVGGLPVEAVARVXLEEIKK-APDTL 140
Query: 124 EVHF 127
EV
Sbjct: 141 EVTL 144
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With
Adenosine-5- Diphosphoribose
Length = 221
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
+L G ++ AGPEL E + VG G+ G T + L +V+H V P
Sbjct: 65 VLSRGPLSKSLLEKAGPELQE---ELDTVGQGVAVSMGTVLKTSSWNLDCRYVLHVVAPE 121
Query: 61 Y--GVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 118
+ G T + + + + + + ++ +++ IAFPAI G +P A + IS V +F
Sbjct: 122 WRNGSTSSLKI-MEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKF 180
Query: 119 AND-----FKEVHFVLFTDDLYNL 137
++ +EVHF+L D N+
Sbjct: 181 SSKNQLKTLQEVHFLLHPSDHENI 204
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed
Serine Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or185
Length = 167
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
G G GAI R GP + E C R+ ++ GEA +T LP +VIH + G
Sbjct: 30 GAGVAGAILRKGGPSIQEECDRIGKI------RVGEAAVTGAGNLPVRYVIHA--AVLGD 81
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFK 123
++R A K++L A ++ +AF A+ + P E + + +K+ A D
Sbjct: 82 EPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAEAVLRVMLEEIKK-APDTL 140
Query: 124 EVHFVLFTD 132
EV V T+
Sbjct: 141 EVTGVHGTE 149
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED
SERINE Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or187
Length = 167
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
G G GAI R GP + E C R+ ++ GEA +T LP +VIH + G
Sbjct: 30 GAGVAGAILRKGGPSIQEECDRIGKI------RVGEAAVTGAGNLPVRYVIHA--AVLGD 81
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFK 123
++R A K++L A ++ +AF A+ + P E + + +K+ A D
Sbjct: 82 EPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAEAVLRVMLEEIKK-APDTL 140
Query: 124 EVHFVLFTD 132
EV V T+
Sbjct: 141 EVTGVHGTE 149
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase
Osh55, Northeast Structural Genomics Consortium Target
Or130
Length = 167
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
G G GAI R GP + E C R+ ++ GEA +T LP +VIH + G
Sbjct: 30 GAGVAGAILRKGGPSIQEECDRIGKI------RVGEAAVTGAGNLPVRYVIHA--AVLGD 81
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFK 123
++R A K++L A ++ +AF A+ + P E + + +K+ A D
Sbjct: 82 EPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAEAVLRVMLEEIKK-APDTL 140
Query: 124 EVHFVLFTD 132
EV V T+
Sbjct: 141 EVTGVHGTE 149
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|B Chain B, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|C Chain C, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|D Chain D, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
Length = 167
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
G G GAI R GP + E C R+ ++ GEA +T LP +VIH + G
Sbjct: 30 GAGVAGAILRKGGPSIQEECDRIGKI------RVGEAAVTGAGNLPVRYVIHAA--VLGD 81
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFK 123
++R A K++L A ++ +AF A+ + P E + +K+ A D
Sbjct: 82 EPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAEAVFRVXFEEIKK-APDTL 140
Query: 124 EVHFVLFTD 132
EV V T+
Sbjct: 141 EVTGVHGTE 149
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
pdb|1HJZ|B Chain B, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
Length = 192
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 38 GEARITPGFKLPA---SHVIHTVGPIYGVTINPE--ASLRSAYKNSLSLAKANNIQYIAF 92
GE +TP L +V HTVGPI + E L A+ L A+ ++ IAF
Sbjct: 78 GEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAF 137
Query: 93 PAISCGLYCYPHEEAATIAISTVKEFAND-FKEVHFVLF 130
PA+S G+Y E+ + VK F KEV V++
Sbjct: 138 PAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIY 176
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module
pdb|2BFQ|A Chain A, Macro Domains Are Adp-Ribose Binding Molecules
Length = 192
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 38 GEARITPGFKLPA---SHVIHTVGPIYGVTINPE--ASLRSAYKNSLSLAKANNIQYIAF 92
GE +TP L +V HTVGPI + E L A+ L A+ ++ IAF
Sbjct: 78 GEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAF 137
Query: 93 PAISCGLYCYPHEEAATIAISTVKEFAND-FKEVHFVLF 130
PA+S G+Y E+ + VK F KEV V++
Sbjct: 138 PAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIY 176
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
pdb|4ETK|B Chain B, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
Length = 167
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 4 GGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGV 63
G G GAI R GP + E C R+ ++ GEA +T LP +VIH + G
Sbjct: 30 GAGVAGAILRKGGPSIQEECDRIGKI------RVGEAAVTGAGNLPVRYVIHAA--VLGD 81
Query: 64 TINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFK 123
++R A K++L A ++ +AF A+ + P E + +K+ A D
Sbjct: 82 EPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAEAVLRVXDEEIKK-APDTL 140
Query: 124 EVHFVLFTD 132
EV V T+
Sbjct: 141 EVTGVHGTE 149
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase
Length = 211
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 38 GEARITPGFKLPA---SHVIHTVGPIYGVTINPE--ASLRSAYKNSLSLAKANNIQYIAF 92
GE +TP L +V HTVGPI + E L A+ L A+ ++ IAF
Sbjct: 87 GEVVVTPAXNLEERGIKYVFHTVGPICSGXWSEELKEKLYKAFLGPLEKAEEXGVESIAF 146
Query: 93 PAISCGLYCYPHEEAATIAISTVKEFAND-FKEVHFVLF 130
PA+S G+Y E+ + VK F KEV V++
Sbjct: 147 PAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIY 185
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 38 GEARITPGFKLPA---SHVIHTVGPIYGVTINPE--ASLRSAYKNSLSLAKANNIQYIAF 92
GE +TP L +V HTVGPI + E L A+ L A+ ++ IAF
Sbjct: 78 GEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAF 137
Query: 93 PAISCGLYCYPHEEAATIAISTVKEF----ANDFKEVH 126
PA+S G+Y E+ ++ VK F + EVH
Sbjct: 138 PAVSAGIYGCDAEKVVETSLEAVKNFKGSAVKEVAEVH 175
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQE|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQO|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|C Chain C, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|D Chain D, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
Length = 168
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 38 GEARITPGFKLPASHVIHTVGPIYGVT--INPEASLRSAYKNSLSLAKANNIQYIAFPAI 95
G+AR+ G A H+IH VGP + + + L AY++ + NN + +A P +
Sbjct: 55 GKARLVKG---AAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLL 111
Query: 96 SCGLYC 101
S G++
Sbjct: 112 STGIFS 117
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
Length = 670
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 37 TGEARITPGFKLPASHVIHTVGPIYGVTINPEAS----LRSAYKNSLSLAKANNIQYIAF 92
TG AR+T VIH VGP + +PEA L++AY L +NI+ +A
Sbjct: 394 TGTARMTVCL---GKKVIHAVGPDF--RKHPEAEALKLLQNAYHAVADLVNEHNIKSVAI 448
Query: 93 PAISCGLY 100
P +S G+Y
Sbjct: 449 PLLSTGIY 456
>pdb|3EWO|A Chain A, Ibv Nsp3 Adrp Domain
pdb|3EWO|B Chain B, Ibv Nsp3 Adrp Domain
pdb|3EWP|A Chain A, Complex Of Substrate Adp-Ribose With Ibv Nsp3 Adrp Domain
pdb|3EWP|B Chain B, Complex Of Substrate Adp-Ribose With Ibv Nsp3 Adrp Domain
Length = 177
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI 60
M GGG AI GP+ +E C + + + +TP F V + VGP
Sbjct: 48 MSHGGGVAKAIADFCGPDFVEYC-----ADYVKKHGPQQKLVTPSFVKGIQCVNNVVGPR 102
Query: 61 YGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLY 100
+G + N L +AYK+ L N + P +S G++
Sbjct: 103 HGDS-NLREKLVAAYKSVLVGGVVNYV----VPVLSSGIF 137
>pdb|3U4F|A Chain A, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
pdb|3U4F|B Chain B, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
pdb|3U4F|C Chain C, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
pdb|3U4F|D Chain D, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
Length = 388
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 46 FKLPASHVIHTVGPIYGVTINPEASLRSAYKNS 78
+++ H T P +GV I PE RSAYK S
Sbjct: 354 YRIEDGHARVTEAPGWGVEICPEWLARSAYKVS 386
>pdb|1DAB|A Chain A, The Structure Of Bordetella Pertussis Virulence Factor
P.69 Pertactin
Length = 539
Score = 27.3 bits (59), Expect = 3.1, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 18 ELLEACYRVPEVGFGIRCPTGEARITPGFKLPASH--VIHTVG 58
EL ++ PE+G IR G PG L A H VI T G
Sbjct: 272 ELAQSIVEAPELGAAIRVGRGARVTVPGGSLSAPHGNVIETGG 314
>pdb|2C2B|A Chain A, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|B Chain B, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|C Chain C, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|D Chain D, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|E Chain E, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|F Chain F, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2G|A Chain A, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
pdb|2C2G|B Chain B, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
Length = 486
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 7 CDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVI 54
C+G + A EL++A + G I CP +T FKL VI
Sbjct: 375 CNGIVEEATEEELMDAMAQADSTGMFI-CPHTGVALTALFKLRNQGVI 421
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray
Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray
Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray
Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray
Structure
Length = 266
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 41 RITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKA 84
+I F L + +GP+ G INP +L N +SL +A
Sbjct: 45 QIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRA 88
>pdb|3CC1|A Chain A, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
pdb|3CC1|B Chain B, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
Length = 433
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 40 ARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISC 97
A+ GFK P S IH +G +G+ I ++ Y+NS L + IA C
Sbjct: 90 AKNGAGFK-PLSDAIHDLGLKFGIHIXRGIPRQAVYENSPVLGSTKTAREIAHTNSIC 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,696,407
Number of Sequences: 62578
Number of extensions: 179049
Number of successful extensions: 409
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 28
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)