Query 031946
Match_columns 150
No_of_seqs 119 out of 1084
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:32:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 7.1E-43 1.5E-47 258.1 9.3 136 1-139 45-185 (186)
2 cd02908 Macro_Appr_pase_like M 100.0 9.3E-40 2E-44 238.5 10.5 136 1-142 25-164 (165)
3 cd02907 Macro_Af1521_BAL_like 100.0 2.4E-39 5.1E-44 238.4 9.7 142 1-144 27-174 (175)
4 PRK04143 hypothetical protein; 100.0 3.4E-39 7.4E-44 249.7 9.8 142 3-145 115-262 (264)
5 PRK00431 RNase III inhibitor; 100.0 4.5E-39 9.8E-44 237.2 9.7 144 1-146 28-175 (177)
6 cd02905 Macro_GDAP2_like Macro 100.0 1.4E-38 3E-43 226.5 9.7 113 1-119 26-140 (140)
7 COG2110 Predicted phosphatase 100.0 3.7E-36 8E-41 220.6 9.1 146 1-146 28-176 (179)
8 cd02906 Macro_1 Macro domain, 100.0 1.3E-35 2.8E-40 213.0 8.3 113 3-116 32-147 (147)
9 cd02903 Macro_BAL_like Macro d 100.0 3.2E-34 6.9E-39 203.6 9.3 110 1-118 27-137 (137)
10 cd03330 Macro_2 Macro domain, 100.0 6.5E-30 1.4E-34 180.4 9.5 108 1-115 25-132 (133)
11 KOG2633 Hismacro and SEC14 dom 100.0 1E-29 2.2E-34 187.8 8.4 140 1-149 52-197 (200)
12 cd02900 Macro_Appr_pase Macro 100.0 2.4E-29 5.1E-34 186.3 9.0 119 1-119 54-186 (186)
13 PF01661 Macro: Macro domain; 100.0 1E-29 2.2E-34 174.8 5.5 109 1-111 8-118 (118)
14 PRK13341 recombination factor 99.9 6.5E-27 1.4E-31 202.6 1.5 146 1-147 504-707 (725)
15 smart00506 A1pp Appr-1"-p proc 99.9 4.8E-25 1E-29 154.6 8.3 107 1-111 25-133 (133)
16 cd02749 Macro Macro domain, a 99.9 2E-24 4.4E-29 154.0 9.1 111 2-115 27-146 (147)
17 cd02901 Macro_Poa1p_like Macro 99.8 1.2E-18 2.7E-23 123.6 8.0 110 1-117 26-139 (140)
18 PHA02595 tk.4 hypothetical pro 99.5 1.8E-13 3.9E-18 98.9 7.8 108 2-114 30-140 (154)
19 PF14519 Macro_2: Macro-like d 99.0 1.3E-09 2.9E-14 84.7 6.4 113 3-119 82-214 (280)
20 TIGR02452 conserved hypothetic 98.5 1.1E-07 2.4E-12 74.2 4.5 87 53-139 164-265 (266)
21 COG4295 Uncharacterized protei 97.6 0.00016 3.4E-09 54.8 6.1 78 68-145 199-281 (285)
22 cd03331 Macro_Poa1p_like_SNF2 97.6 0.00029 6.4E-09 50.8 6.6 107 3-114 32-148 (152)
23 PF10154 DUF2362: Uncharacteri 97.2 0.0011 2.3E-08 56.2 6.9 117 33-149 370-505 (510)
24 PHA00684 hypothetical protein 71.9 8.2 0.00018 26.9 4.0 49 67-115 54-102 (128)
25 KOG1502 Flavonol reductase/cin 66.3 8.2 0.00018 31.3 3.6 45 50-94 79-128 (327)
26 PHA03033 hypothetical protein; 66.2 4.8 0.0001 28.1 1.9 52 1-64 30-82 (142)
27 PF01073 3Beta_HSD: 3-beta hyd 60.0 15 0.00031 28.8 3.9 45 49-93 66-114 (280)
28 CHL00194 ycf39 Ycf39; Provisio 56.1 45 0.00098 26.1 6.2 44 49-92 64-107 (317)
29 PRK14837 undecaprenyl pyrophos 54.9 19 0.00041 27.7 3.7 40 72-111 36-75 (230)
30 PLN02214 cinnamoyl-CoA reducta 54.0 14 0.00031 29.5 3.0 41 50-93 82-125 (342)
31 PLN02657 3,8-divinyl protochlo 50.6 61 0.0013 26.6 6.3 45 49-93 136-180 (390)
32 TIGR00055 uppS undecaprenyl di 49.8 25 0.00055 27.0 3.6 47 72-119 29-75 (226)
33 cd00475 CIS_IPPS Cis (Z)-Isopr 48.2 29 0.00062 26.6 3.7 47 72-119 30-76 (221)
34 PRK14842 undecaprenyl pyrophos 45.1 33 0.00071 26.6 3.6 47 72-119 38-84 (241)
35 PRK14833 undecaprenyl pyrophos 44.8 31 0.00068 26.6 3.5 47 72-119 34-80 (233)
36 PRK14841 undecaprenyl pyrophos 43.3 36 0.00078 26.2 3.6 40 72-111 33-72 (233)
37 PRK14832 undecaprenyl pyrophos 41.7 40 0.00086 26.4 3.7 40 72-111 48-87 (253)
38 PF13460 NAD_binding_10: NADH( 41.2 28 0.00061 24.6 2.7 36 49-92 60-95 (183)
39 PRK14840 undecaprenyl pyrophos 41.1 41 0.00089 26.3 3.6 40 72-111 52-91 (250)
40 PRK14827 undecaprenyl pyrophos 41.1 40 0.00087 27.0 3.7 40 72-111 97-136 (296)
41 PRK14838 undecaprenyl pyrophos 40.7 41 0.00089 26.1 3.6 47 72-119 40-86 (242)
42 KOG4506 Uncharacterized conser 40.5 31 0.00067 28.9 3.0 65 34-98 416-483 (598)
43 KOG1602 Cis-prenyltransferase 40.4 42 0.00092 26.4 3.6 41 72-112 66-106 (271)
44 PRK14829 undecaprenyl pyrophos 40.4 42 0.00091 26.0 3.6 39 72-110 44-82 (243)
45 PRK05086 malate dehydrogenase; 40.4 1.9E+02 0.0041 23.1 7.9 63 50-118 70-135 (312)
46 PF01255 Prenyltransf: Putativ 40.3 48 0.001 25.2 3.9 38 74-111 26-63 (223)
47 PRK14839 undecaprenyl pyrophos 40.2 43 0.00093 26.0 3.6 40 72-111 39-78 (239)
48 PRK14831 undecaprenyl pyrophos 39.5 40 0.00086 26.3 3.4 39 72-110 50-88 (249)
49 PRK14834 undecaprenyl pyrophos 37.6 57 0.0012 25.4 4.0 39 72-110 44-82 (249)
50 PRK10240 undecaprenyl pyrophos 37.4 52 0.0011 25.3 3.7 46 73-119 24-69 (229)
51 COG2388 Predicted acetyltransf 37.3 33 0.0007 22.9 2.2 41 51-94 40-80 (99)
52 cd06155 eu_AANH_C_1 A group of 37.3 43 0.00094 21.8 2.9 44 104-147 24-74 (101)
53 PTZ00349 dehydrodolichyl dipho 36.3 52 0.0011 26.7 3.6 40 72-111 49-88 (322)
54 KOG1577 Aldo/keto reductase fa 36.1 41 0.00089 27.0 3.0 28 90-117 13-40 (300)
55 PRK14835 undecaprenyl pyrophos 35.9 60 0.0013 25.7 3.9 40 72-111 71-110 (275)
56 PRK14828 undecaprenyl pyrophos 35.8 62 0.0014 25.3 3.9 40 72-111 57-96 (256)
57 PTZ00325 malate dehydrogenase; 35.6 59 0.0013 26.2 3.9 44 49-92 76-122 (321)
58 PLN02662 cinnamyl-alcohol dehy 34.5 70 0.0015 24.8 4.1 43 50-92 77-124 (322)
59 COG0648 Nfo Endonuclease IV [D 33.9 1.2E+02 0.0026 24.2 5.2 63 51-119 69-131 (280)
60 KOG2495 NADH-dehydrogenase (ub 33.4 1.2E+02 0.0025 26.0 5.3 100 46-145 155-278 (491)
61 PF01042 Ribonuc_L-PSP: Endori 32.1 80 0.0017 21.1 3.6 25 124-148 68-92 (121)
62 KOG3716 Carnitine O-acyltransf 31.2 75 0.0016 28.5 4.0 49 67-115 517-568 (764)
63 PRK14830 undecaprenyl pyrophos 30.1 79 0.0017 24.7 3.7 43 69-111 49-91 (251)
64 PRK07475 hypothetical protein; 30.0 91 0.002 24.0 4.0 97 34-132 26-132 (245)
65 PF15162 DUF4580: Domain of un 30.0 90 0.002 22.7 3.6 64 82-147 34-101 (162)
66 PF02789 Peptidase_M17_N: Cyto 29.6 1.7E+02 0.0036 19.3 5.0 98 10-117 16-114 (126)
67 TIGR03234 OH-pyruv-isom hydrox 29.5 1.9E+02 0.004 21.8 5.7 50 70-120 81-130 (254)
68 PTZ00372 endonuclease 4-like p 29.4 1.2E+02 0.0026 25.5 4.8 61 69-130 214-274 (413)
69 PLN02986 cinnamyl-alcohol dehy 29.1 89 0.0019 24.3 3.9 44 50-93 78-126 (322)
70 PRK06052 5-methyltetrahydropte 27.6 1.2E+02 0.0025 25.0 4.3 47 68-114 141-190 (344)
71 PF04316 FlgM: Anti-sigma-28 f 27.1 39 0.00084 19.8 1.2 20 95-114 37-56 (57)
72 PRK14836 undecaprenyl pyrophos 27.1 76 0.0016 24.8 3.1 49 69-118 41-89 (253)
73 COG1252 Ndh NADH dehydrogenase 27.1 83 0.0018 26.4 3.5 103 42-144 92-213 (405)
74 PRK10810 anti-sigma28 factor F 27.0 60 0.0013 21.6 2.2 25 96-120 72-96 (98)
75 PF05378 Hydant_A_N: Hydantoin 26.3 96 0.0021 22.6 3.4 29 72-100 133-161 (176)
76 cd00448 YjgF_YER057c_UK114_fam 25.6 79 0.0017 20.1 2.6 24 125-148 58-81 (107)
77 PF03681 UPF0150: Uncharacteri 25.5 1.3E+02 0.0028 16.6 3.2 36 84-119 10-46 (48)
78 cd06150 YjgF_YER057c_UK114_lik 25.1 91 0.002 20.3 2.9 44 105-148 28-78 (105)
79 cd06154 YjgF_YER057c_UK114_lik 24.6 76 0.0017 21.3 2.5 24 125-148 70-93 (119)
80 PRK15181 Vi polysaccharide bio 24.1 85 0.0018 25.0 3.0 45 50-94 91-140 (348)
81 PRK11401 putative endoribonucl 24.0 93 0.002 21.2 2.8 24 124-147 73-96 (129)
82 PLN02778 3,5-epimerase/4-reduc 23.2 84 0.0018 24.6 2.8 44 49-92 57-108 (298)
83 PF05924 SAMP: SAMP Motif; In 22.4 59 0.0013 15.2 1.1 13 68-80 3-15 (20)
84 COG0020 UppS Undecaprenyl pyro 22.1 1.3E+02 0.0029 23.3 3.6 41 70-110 44-84 (245)
85 PF09039 HTH_Tnp_Mu_2: Mu DNA 21.9 45 0.00097 22.5 0.8 27 68-97 48-74 (108)
86 TIGR00004 endoribonuclease L-P 21.3 1.1E+02 0.0023 20.6 2.6 21 127-147 76-96 (124)
87 KOG4025 Putative apoptosis rel 21.2 1.4E+02 0.0031 22.0 3.4 13 136-148 167-179 (207)
88 KOG1576 Predicted oxidoreducta 21.0 2.6E+02 0.0056 22.6 5.0 58 59-119 243-308 (342)
89 PRK06199 ornithine cyclodeamin 20.9 1.1E+02 0.0025 25.1 3.2 70 69-147 135-206 (379)
90 PLN02725 GDP-4-keto-6-deoxyman 20.9 97 0.0021 23.7 2.7 44 49-92 49-98 (306)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=7.1e-43 Score=258.11 Aligned_cols=136 Identities=25% Similarity=0.448 Sum_probs=126.2
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (150)
|.++|||++||+++||++|++||+++.+. .+++++|++++|++|+||||||||+|+|.|..+ ++++.|++||++||+
T Consensus 45 L~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~~~iT~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~ 121 (186)
T cd02904 45 IDLKGEVGNALEKKGGKEFVEAVKELRKS--NGPLEIAGAAVSQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLA 121 (186)
T ss_pred cCCCCcHhHHHHHHcCHHHHHHHHHHHHh--cCCCCCCCEEEccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHH
Confidence 67899999999999999999999987632 358999999999999999999999999999664 457899999999999
Q ss_pred hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh-----chhhhhhhheechhhHHHH
Q 031946 81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN-----DFKEVHFVLFTDDLYNLWL 139 (150)
Q Consensus 81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~-----~l~~V~~v~~~~~~~~~f~ 139 (150)
+|++++++|||||+||||++|||++++|++|++++++|++ ++++|+||+++++.+++|.
T Consensus 122 ~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~~~~~l~~I~fv~~~~~~~~~y~ 185 (186)
T cd02904 122 AAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKQIYFVLFDSESIGIYV 185 (186)
T ss_pred HHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccEEEEEECCHHHHHHhh
Confidence 9999999999999999999999999999999999999985 4789999999999999984
No 2
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=9.3e-40 Score=238.52 Aligned_cols=136 Identities=54% Similarity=0.909 Sum_probs=128.6
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccC-CChhhhHHHHhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVT-INPEASLRSAYKNSL 79 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~-~~~~~~L~~~~~~~L 79 (150)
|.++|||++||+++||++|++||+++. ++++|++++|++|+|+|+||||+|+|.|+.+ .++.+.|++||++||
T Consensus 25 l~~~ggv~~ai~~~~G~~l~~e~~~~~------~~~~G~~v~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L 98 (165)
T cd02908 25 LLGGGGVDGAIHRAAGPELLEECRELR------GCPTGEAVITSGYNLPAKYVIHTVGPVWRGGQHNEAELLASCYRNSL 98 (165)
T ss_pred ccCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCCEEEeeCCCCCCCEEEEEcCCcccCCCCcHHHHHHHHHHHHH
Confidence 578999999999999999999999886 6799999999999999999999999999875 356899999999999
Q ss_pred hhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh---chhhhhhhheechhhHHHHHHH
Q 031946 80 SLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN---DFKEVHFVLFTDDLYNLWLEKA 142 (150)
Q Consensus 80 ~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~---~l~~V~~v~~~~~~~~~f~~~~ 142 (150)
+.|++++++|||||+||||++|+|++++|++|++++++|++ ++++|+||+++++++++|++.+
T Consensus 99 ~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~~~~l~~V~~v~~~~~~~~~f~~~l 164 (165)
T cd02908 99 ELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEEHDAIERVIFVCFSEEDYEIYEKAL 164 (165)
T ss_pred HHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999995 5889999999999999999876
No 3
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=2.4e-39 Score=238.38 Aligned_cols=142 Identities=32% Similarity=0.455 Sum_probs=131.9
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCC--ChhhhHHHHhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTI--NPEASLRSAYKNS 78 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~ 78 (150)
|.++|||+++|++++|+++++||++++++ .+++++|++++|++|+|+||||||+|+|.|..+. ++.+.|++||++|
T Consensus 27 ~~~~ggv~~ai~~~~G~~l~~e~~~~~~~--~g~~~~G~~~~T~~~~L~~k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~ 104 (175)
T cd02907 27 LKHGGGLALAIVKAGGPEIQEESDEYVRK--NGPVPTGEVVVTSAGKLPCKYVIHAVGPRWSGGEAEECVEKLKKAILNS 104 (175)
T ss_pred cCCCCCHHHHHHHHHhHHHHHHHHHHHHh--cCCCCCCcEEEecCCCCCCCEEEEeCCCcCCCCCCchHHHHHHHHHHHH
Confidence 56899999999999999999999988643 4589999999999999999999999999998864 4678999999999
Q ss_pred hhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh----chhhhhhhheechhhHHHHHHHHh
Q 031946 79 LSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN----DFKEVHFVLFTDDLYNLWLEKARE 144 (150)
Q Consensus 79 L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~----~l~~V~~v~~~~~~~~~f~~~~~~ 144 (150)
|+.|.+++++|||||+||||++|+|++++|++|++++++|+. ++++|+||+++++++++|++.+..
T Consensus 105 L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~I~~v~~~~~~~~~~~~al~~ 174 (175)
T cd02907 105 LRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKGSALKEIYLVDYDEQTVEAFEKALEV 174 (175)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEECCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999986 478999999999999999998764
No 4
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=249.70 Aligned_cols=142 Identities=37% Similarity=0.507 Sum_probs=129.7
Q ss_pred CCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccC---CChhhhHHHHhhhhh
Q 031946 3 GGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVT---INPEASLRSAYKNSL 79 (150)
Q Consensus 3 ~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~---~~~~~~L~~~~~~~L 79 (150)
++|||++||+++||++|+++|++++++ +++++++|++++|++|+|+||||||+|||.|..+ ..+.+.|++||++||
T Consensus 115 ~~ggId~aI~~aAG~~L~~eC~~~~~~-~g~~~~~G~a~iT~~~nLp~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L 193 (264)
T PRK04143 115 NHDCIDNAIHTFAGVQLRLDCAEIMTE-QGRKEATGQAKITRAYNLPAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCL 193 (264)
T ss_pred CCCcHHHHHHHHhChHHHHHHHHHHHH-cCCCCCCceEEEecCCCCCCCEEEEECCCcccCCCCCcchHHHHHHHHHHHH
Confidence 358999999999999999999998754 4558899999999999999999999999999874 246789999999999
Q ss_pred hhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhc---hhhhhhhheechhhHHHHHHHHhh
Q 031946 80 SLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAND---FKEVHFVLFTDDLYNLWLEKAREL 145 (150)
Q Consensus 80 ~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~---l~~V~~v~~~~~~~~~f~~~~~~~ 145 (150)
+.|++++++|||||+||||++|||++++|++|++++++|++. ..+|+|++++++.++.|++.|...
T Consensus 194 ~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~~~~~~~Vif~vf~~~d~~iy~~~l~~~ 262 (264)
T PRK04143 194 KLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKENPSKLKVVFNVFTDEDLELYQKALNKE 262 (264)
T ss_pred HHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999962 357999999999999999998753
No 5
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=4.5e-39 Score=237.23 Aligned_cols=144 Identities=50% Similarity=0.772 Sum_probs=133.4
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCC-ChhhhHHHHhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTI-NPEASLRSAYKNSL 79 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L 79 (150)
|.++|||++||++++|+++++||+++.+. ++++++|++++|++|+|+||||||+|+|.|+... .+.+.|++||+++|
T Consensus 28 ~~~~ggva~aI~~~~G~~l~~e~~~~~~~--~~~l~~G~~~~T~~~~l~~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L 105 (177)
T PRK00431 28 LLGGGGVDGAIHRAAGPEILEECRELRQQ--QGPCPTGEAVITSAGRLPAKYVIHTVGPVWRGGEDNEAELLASAYRNSL 105 (177)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeEEEecCCCCCCCEEEEecCCeecCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999999998743 3699999999999999999999999999998764 35789999999999
Q ss_pred hhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh---chhhhhhhheechhhHHHHHHHHhhc
Q 031946 80 SLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN---DFKEVHFVLFTDDLYNLWLEKARELL 146 (150)
Q Consensus 80 ~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~---~l~~V~~v~~~~~~~~~f~~~~~~~f 146 (150)
+.|++++++|||||+||||++|+|++++|++|++++++|++ ++++|+||+++++.+++|++.|.+..
T Consensus 106 ~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~~~l~~I~~v~~~~~~~~~f~~~l~~~~ 175 (177)
T PRK00431 106 RLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRHKSPEEVYFVCYDEEAYRLYERLLTQQG 175 (177)
T ss_pred HHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcCCCcCEEEEEECCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999975 57899999999999999999998654
No 6
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=1.4e-38 Score=226.51 Aligned_cols=113 Identities=42% Similarity=0.597 Sum_probs=106.9
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCC--hhhhHHHHhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTIN--PEASLRSAYKNS 78 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~--~~~~L~~~~~~~ 78 (150)
|.++|||++||+++||++|++||++.. ++++|++++|++|+|+||||||+|+|.|+.+++ .++.|++||+++
T Consensus 26 l~~~ggv~~aI~~aaG~~l~~e~~~~~------~~~~G~~~~T~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~~~~~ 99 (140)
T cd02905 26 LTDKNPISDKIFARAGSELREEIQTLG------GCRTGEAKLTKGYNLPARFIIHTVGPKYNVKYRTAAENALYSCYRNV 99 (140)
T ss_pred cCCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCcEEEecCCCCCccEEEEecCCccCCCCCcHHHHHHHHHHHHH
Confidence 578999999999999999999999864 699999999999999999999999999998753 468999999999
Q ss_pred hhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 79 LSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 79 L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
|+.|++++++|||||+||||++|||++++|++|++++++|+
T Consensus 100 L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 100 LQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999995
No 7
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=3.7e-36 Score=220.55 Aligned_cols=146 Identities=44% Similarity=0.687 Sum_probs=135.5
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCC-ChhhhHHHHhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTI-NPEASLRSAYKNSL 79 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L 79 (150)
|+|||||+.||++++|++++++|++...++.+.++++|++++|++|+|+.+||||+++|.|..+. .+.+.|+.||+++|
T Consensus 28 l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a~~ViH~vgp~~~~g~~~~~e~l~~a~~~~l 107 (179)
T COG2110 28 LLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPAKYVIHTVGPSWRGGSKDEAELLAAAYRAAL 107 (179)
T ss_pred CCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCCCEEEecCCCcccCCChhHHHHHHHHHHHHH
Confidence 67899999999999999999999998755556678899999999999999999999999998875 46789999999999
Q ss_pred hhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh--chhhhhhhheechhhHHHHHHHHhhc
Q 031946 80 SLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN--DFKEVHFVLFTDDLYNLWLEKARELL 146 (150)
Q Consensus 80 ~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~--~l~~V~~v~~~~~~~~~f~~~~~~~f 146 (150)
++|++.+++|||||++|||.+|+|++++++++++++++|+. +.+.|+||+++++....|.+.+.+..
T Consensus 108 ~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~~~~~~v~~v~~~~e~~~~~~~~~~~~~ 176 (179)
T COG2110 108 RLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPEASIETVIFVVYGEETARVYEELLSTHL 176 (179)
T ss_pred HHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhcccccccEEEEEecCchhHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999995 67899999999999999999887653
No 8
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=100.00 E-value=1.3e-35 Score=212.95 Aligned_cols=113 Identities=44% Similarity=0.653 Sum_probs=104.6
Q ss_pred CCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCC---ChhhhHHHHhhhhh
Q 031946 3 GGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTI---NPEASLRSAYKNSL 79 (150)
Q Consensus 3 ~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~---~~~~~L~~~~~~~L 79 (150)
++|||++||++++|++|++||+++.++ .++++++|++++|++++|+|+||||+|+|.|..+. ++.+.|++||+++|
T Consensus 32 ~~ggv~~aI~~~aG~~l~~e~~~~~~~-~g~~~~~G~a~~T~~~~L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L 110 (147)
T cd02906 32 LHRCIDNIIHTFAGPQLRQACFELMTK-QGREEPTGQAKITPGYNLPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCL 110 (147)
T ss_pred CCCcHHHHHHHHhCHHHHHHHHHHHHh-cCCCCCCCeEEEEeCCCCCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHH
Confidence 569999999999999999999998743 44579999999999999999999999999998764 36789999999999
Q ss_pred hhhhhcCceeeeecceeccccccchhHHHHHHHHHHH
Q 031946 80 SLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVK 116 (150)
Q Consensus 80 ~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~ 116 (150)
+.|++++++|||||+||||++|||++++|++++++++
T Consensus 111 ~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 111 DLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred HHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999875
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=100.00 E-value=3.2e-34 Score=203.57 Aligned_cols=110 Identities=30% Similarity=0.399 Sum_probs=102.6
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccC-CCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCP-TGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSL 79 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~-~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L 79 (150)
+.++|||+++|++++|++++++|+++.. ++ +|++++|++|+|+||||||+++|+|..+ +.+.|+++|++||
T Consensus 27 ~~~~ggv~~aI~~~~G~~l~~~~~~~~~------~~~~G~~~vT~~~~L~~k~IiH~~~p~~~~~--~~~~l~~~~~~~L 98 (137)
T cd02903 27 FLLKGGVSKAILRKAGPELQKELDKAKL------GQTVGSVIVTKGGNLPCKYVYHVVLPNWSNG--ALKILKDIVSECL 98 (137)
T ss_pred CCCCCCHHHHHHHhccHHHHHHHHHHcC------CCCCCeEEEecCCCCCCCEEEEecCCCCCCc--hHHHHHHHHHHHH
Confidence 3578999999999999999999998863 34 6999999999999999999999999865 5789999999999
Q ss_pred hhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHH
Q 031946 80 SLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 118 (150)
Q Consensus 80 ~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~ 118 (150)
+.|++++++|||||+||||++|+|++++|++|++++++|
T Consensus 99 ~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 99 EKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred HHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999886
No 10
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=99.96 E-value=6.5e-30 Score=180.40 Aligned_cols=108 Identities=35% Similarity=0.489 Sum_probs=100.2
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (150)
|.|++||+++|++++|++++++|++.. ++++|++++|++++|+||||||+++|.+.. ..+.+.|++||+++|+
T Consensus 25 ~~~g~Gva~ai~~~~G~~~~~~~~~~~------~~~~G~~~~t~~~~l~~k~Iih~~~~~~~~-~~~~~~l~~~~~~~l~ 97 (133)
T cd03330 25 LRMGGGVAGAIKRAGGSVIEREAVRKA------PIPVGEAVITGAGDLPARYVIHAATMEEPG-RSSEESVRKATRAALA 97 (133)
T ss_pred CCCCCcHHHHHHHHhCHHHHHHHHHcC------CCCCCeEEEEeCCCCCCCEEEEeCCCCCCC-CCHHHHHHHHHHHHHH
Confidence 568999999999999999999998753 789999999999999999999999997654 4567899999999999
Q ss_pred hhhhcCceeeeecceeccccccchhHHHHHHHHHH
Q 031946 81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTV 115 (150)
Q Consensus 81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i 115 (150)
.|++++++|||||+||||++|+|+++++++|.+++
T Consensus 98 ~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 98 LADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred HHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999886
No 11
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=1e-29 Score=187.81 Aligned_cols=140 Identities=41% Similarity=0.626 Sum_probs=122.3
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCCh-hhhHHHHhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINP-EASLRSAYKNSL 79 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~-~~~L~~~~~~~L 79 (150)
|.+|+|++.+|++++||++..||.+.. .+++|.+++|.+++|++|+|||+|+|.|..++.. ...|+.||++||
T Consensus 52 l~~g~~~~~ai~~aagp~l~~e~~~~~------~c~tG~ak~t~~~~Lpak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L 125 (200)
T KOG2633|consen 52 LLGGKGVDEAIHRAAGPELPLECAYLH------GCRTGAAKSTGGYGLPAKRVIHTVGPRWKEDKLQECYFLHSCYRSCL 125 (200)
T ss_pred eccCcchhHHHHHhcCCcchHHHHhhc------CCCCCeeEecCCCCCceeEEEEecCchhhccchHHHHHHHHHHHHHH
Confidence 578999999999999999999999875 5999999999999999999999999999987643 336999999999
Q ss_pred hhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh-----chhhhhhhheechhhHHHHHHHHhhcccC
Q 031946 80 SLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN-----DFKEVHFVLFTDDLYNLWLEKARELLSFS 149 (150)
Q Consensus 80 ~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~-----~l~~V~~v~~~~~~~~~f~~~~~~~f~~~ 149 (150)
.+|.+++++|||||+|++|.++||.+++|++.++++++|+. .++.+.|+.+|.+.+..| +..|||.+
T Consensus 126 ~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f~~~~d~~l~~~~f~~~d~e~~~~~---l~~~~~~~ 197 (200)
T KOG2633|consen 126 DLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFFVKNKDSSLKTVPFLDYDSESYGAY---LPEYAPSD 197 (200)
T ss_pred HHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHHhhCCCceEEEEEEeccCCchHHHH---Hhhhcccc
Confidence 99999999999999999999999999999999999999985 345567777776666555 55555544
No 12
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.96 E-value=2.4e-29 Score=186.26 Aligned_cols=119 Identities=22% Similarity=0.156 Sum_probs=105.4
Q ss_pred CCCCCCchhhhhhhhC-hhHHHHhhcCccccCccccCCCceeccCCCCCC----------cccceeecccccc-cCCChh
Q 031946 1 MLGGGGCDGAIRRAAG-PELLEACYRVPEVGFGIRCPTGEARITPGFKLP----------ASHVIHTVGPIYG-VTINPE 68 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G-~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~----------~k~IiH~v~P~~~-~~~~~~ 68 (150)
|.|||||+.||++++| ++|+++|++.+.++..|.+++|++++|++++|+ +|||||++++.+. ....+.
T Consensus 54 ~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it~~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~ 133 (186)
T cd02900 54 GYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVVPLGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGT 133 (186)
T ss_pred cCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEecCCCCccccccccccCCCEEEEcCcccCCCCCCCcH
Confidence 5799999999999999 689999987653334569999999999999999 9999999987665 223456
Q ss_pred hhHHHHhhhhhhhhhhc--CceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 69 ASLRSAYKNSLSLAKAN--NIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 69 ~~L~~~~~~~L~~a~~~--~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
+.|++||+++|+.|+++ +++|||||+||||.+|+|++++|++|+.++++|.
T Consensus 134 ~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~m~~ai~~f~ 186 (186)
T cd02900 134 EPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQMAFAIRLFN 186 (186)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHHHHHHHHHhC
Confidence 89999999999999987 8999999999999999999999999999999883
No 13
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.96 E-value=1e-29 Score=174.75 Aligned_cols=109 Identities=44% Similarity=0.702 Sum_probs=100.5
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccC--CChhhhHHHHhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVT--INPEASLRSAYKNS 78 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~--~~~~~~L~~~~~~~ 78 (150)
|.|++||+++|++++|++++++|+++++ +++++++|++++|++++|++++|||+++|.|... .++.+.|+++|+++
T Consensus 8 ~~~g~Gva~ai~~~~g~~~~~~~~~~~~--~~~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L~~~~~~~ 85 (118)
T PF01661_consen 8 LSMGGGVAKAIFKAAGPALQEECKEIKK--KGGELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEALESAYRNA 85 (118)
T ss_dssp SSBSSHHHHHHHHHHTHHHHHHHHHHHH--HHHSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHhchHHHHHHHHHhhc--ccCcccCCCeeeecCCCccccceEEEecceeccccccccHHHHHHHHHHH
Confidence 5789999999999999999999988863 2347999999999999999999999999999743 35789999999999
Q ss_pred hhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 79 LSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 79 L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
|+.|++++++||+||+||||++|+|+++++++|
T Consensus 86 l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 86 LQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 999999999999999999999999999999986
No 14
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.92 E-value=6.5e-27 Score=202.63 Aligned_cols=146 Identities=24% Similarity=0.257 Sum_probs=130.9
Q ss_pred CCCCCCchhhhhhhhChhH---HHHhhcCcccc--------------------C----------ccccCCCceecc----
Q 031946 1 MLGGGGCDGAIRRAAGPEL---LEACYRVPEVG--------------------F----------GIRCPTGEARIT---- 43 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l---~~e~~~~~~~~--------------------~----------~~~~~~G~~~~t---- 43 (150)
|++||||+++|+++||+++ +++|+++..+. . .|.+++|++++|
T Consensus 504 ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~~~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~ 583 (725)
T PRK13341 504 LLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVLLDGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELW 583 (725)
T ss_pred chhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCccccccchhhhhhcCcccceeeeeccCcccchhhHHHHH
Confidence 6789999999999999999 88988743210 0 358999999999
Q ss_pred --------CCCCCCcccceeecccccccCCChhhhHHHHhhhhhhhhhhcCce----------eeeecceeccccccchh
Q 031946 44 --------PGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQ----------YIAFPAISCGLYCYPHE 105 (150)
Q Consensus 44 --------~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~----------sia~P~lgtG~~~~p~~ 105 (150)
++|+|+|+||||+|||.|..+.. .+.|.+||+++|+.|++++++ |||||+|+||++|||.+
T Consensus 584 ~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L~~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~ 662 (725)
T PRK13341 584 QQLTEKLTPAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSALLEAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEE 662 (725)
T ss_pred HHHHHhcCCCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHHHHHHHHhcccccchhHHHHHHHhcCCccceecCCcc
Confidence 99999999999999999987643 568999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHhh---chhhhhhhheechhhHHHHHHHHhhcc
Q 031946 106 EAATIAISTVKEFAN---DFKEVHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 106 ~~a~~~l~~i~~~~~---~l~~V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
++++++++++.+|+. ...++.++.++++.+..|++.+.++|-
T Consensus 663 ~a~~i~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 707 (725)
T PRK13341 663 LALGIDSKLIKRWLAQGPDYRQALATNLEEERICNLDEELTRILG 707 (725)
T ss_pred cccccCHHHHHHHHhcCCcHHHHHhccCCHHHHHHHHHHHHHHhh
Confidence 999999999999995 456888999999999999999998774
No 15
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.92 E-value=4.8e-25 Score=154.59 Aligned_cols=107 Identities=41% Similarity=0.584 Sum_probs=96.1
Q ss_pred CCCCCCchhhhhhhhChhH-HHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccC-CChhhhHHHHhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPEL-LEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVT-INPEASLRSAYKNS 78 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l-~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~-~~~~~~L~~~~~~~ 78 (150)
+.++||++++|++++|+++ ++++++.. ++++++|++++|+++++++++|||+++|+|.+. ..+.+.|+++|++|
T Consensus 25 ~~~~~g~a~~i~~~~g~~~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~Iih~~~p~~~~~~~~~~~~l~~~~~~~ 100 (133)
T smart00506 25 GAHGGGVAGAIARAAGKALEKEAFRKLA----GGECPVGTAVVTEGGNLPAKYVIHAVGPRASGHSNEGFELLENAYRNC 100 (133)
T ss_pred cCCCCcHHHHHHHHhChHHHHHHHHHhc----CCCcCCccEEEecCCCCCCCEEEEeCCCCCCCCCccHHHHHHHHHHHH
Confidence 4689999999999999996 66665543 237999999999999999999999999999986 36789999999999
Q ss_pred hhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 79 LSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 79 L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
|+.|++++++||+||.||||.+|+|.+++++++
T Consensus 101 l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 101 LELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred HHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 999999999999999999999999999999874
No 16
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.91 E-value=2e-24 Score=154.01 Aligned_cols=111 Identities=37% Similarity=0.533 Sum_probs=101.7
Q ss_pred CCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCC-cccceeecccccccCC--ChhhhHHHHhhhh
Q 031946 2 LGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLP-ASHVIHTVGPIYGVTI--NPEASLRSAYKNS 78 (150)
Q Consensus 2 ~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~-~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~ 78 (150)
.+++|++.+|++++|+++++++++....+ .+++|++++|++++++ ++||||+++|.|.... .+.+.|++||++|
T Consensus 27 ~~g~gi~~ai~~~~g~~~~~~~~~~~~~~---~~~~G~~~~t~~~~~~~~~~vih~~~p~~~~~~~~~~~~~l~~a~~~~ 103 (147)
T cd02749 27 RDGGGVNLAISKKAGKELEEESKKLRKEL---ELQVGEAVLTKGYNLDGAKYLIHIVGPKYNQGNNKAAFELLKNAYENC 103 (147)
T ss_pred CCCChHHHHHHHHhCHHHHHHHHHHhccc---CCCCCCEEECcCCCCCcCCEEEEeCCCCCCCCCCchHHHHHHHHHHHH
Confidence 58999999999999999999999987321 3799999999999999 9999999999998764 3578999999999
Q ss_pred hhhhhhcCceeeeecceecccccc------chhHHHHHHHHHH
Q 031946 79 LSLAKANNIQYIAFPAISCGLYCY------PHEEAATIAISTV 115 (150)
Q Consensus 79 L~~a~~~~~~sia~P~lgtG~~~~------p~~~~a~~~l~~i 115 (150)
|..|.+++++||+||.||||.+|+ |.+.++++|++++
T Consensus 104 L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 104 LKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred HHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 999999999999999999999999 9999999999876
No 17
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.77 E-value=1.2e-18 Score=123.59 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=90.8
Q ss_pred CCCCCCchhhhhhhh--C-hhHHHHhhcCccccCccccCCCcee-ccCCCCCCcccceeecccccccCCChhhhHHHHhh
Q 031946 1 MLGGGGCDGAIRRAA--G-PELLEACYRVPEVGFGIRCPTGEAR-ITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYK 76 (150)
Q Consensus 1 l~~~ggv~~aI~~~~--G-~~l~~e~~~~~~~~~~~~~~~G~~~-~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~ 76 (150)
+.||+|++.+|.++. + .++++.|++. .+..|++. ++.++++++++|+|+++|.|.+.....+.|++|++
T Consensus 26 ~~mG~Gia~~i~~~~p~~~~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~I~~~~t~~~~~~~~~~~~l~~~l~ 98 (140)
T cd02901 26 GVMGKGIALQFKEKFPEFVEEYRAACKKK-------ELLLGGVAVLERGSSLVSRYIYNLPTKVHYGPKSRYEAIEKSLR 98 (140)
T ss_pred CccChHHHHHHHHHCcHHHHHHHHHHHhc-------CCCCCcEEEEecCCCCCceEEEEeeccCCCCCCCcHHHHHHHHH
Confidence 468999999999973 2 3455556543 24456554 56677888999999999988775566789999999
Q ss_pred hhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHH
Q 031946 77 NSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKE 117 (150)
Q Consensus 77 ~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~ 117 (150)
++++.|++++++||+||.||||.+|+|.+++++++.+.+.+
T Consensus 99 ~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~~ 139 (140)
T cd02901 99 ELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALAD 139 (140)
T ss_pred HHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999998887754
No 18
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.47 E-value=1.8e-13 Score=98.90 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=88.6
Q ss_pred CCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceec-cCCCCCCcccceeecccccccCCC-hhhhHHHHhhhhh
Q 031946 2 LGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARI-TPGFKLPASHVIHTVGPIYGVTIN-PEASLRSAYKNSL 79 (150)
Q Consensus 2 ~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~-t~~~~L~~k~IiH~v~P~~~~~~~-~~~~L~~~~~~~L 79 (150)
.||+||+.+|.++++ ++.++.++.- .+++.+.|++.+ +.+++.+.+||+|..+- |+.+.. +.+.|++++++..
T Consensus 30 ~mG~GIA~~~k~~~P-~~~~~y~~~~---~~~~~~lG~~~~~~~~~~~~~~~I~nl~tq-~~~~~~~~y~ai~~~l~~l~ 104 (154)
T PHA02595 30 TMGSGIAGQLAKAFP-QILEADKLTT---EGDVEKLGTFSVWEKYVGGHKAYCFNLYTQ-FDPGPNLEYSALMNCFEELN 104 (154)
T ss_pred cCChHHHHHHHHHcC-hHHHHHHHHh---cCCccccceEEEEEeeccCCCEEEEEEecc-CCCCCCCcHHHHHHHHHHHH
Confidence 689999999999995 6666665543 234678899965 56677778999999876 776543 4567999999999
Q ss_pred hhhhhcCc-eeeeecceeccccccchhHHHHHHHHH
Q 031946 80 SLAKANNI-QYIAFPAISCGLYCYPHEEAATIAIST 114 (150)
Q Consensus 80 ~~a~~~~~-~sia~P~lgtG~~~~p~~~~a~~~l~~ 114 (150)
+.+.+++. .||+||.||||.+|.|.+++.+++.+.
T Consensus 105 ~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~ 140 (154)
T PHA02595 105 EVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA 140 (154)
T ss_pred HHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh
Confidence 99999997 999999999999999999999997765
No 19
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=98.97 E-value=1.3e-09 Score=84.73 Aligned_cols=113 Identities=19% Similarity=0.139 Sum_probs=71.9
Q ss_pred CCCCchhhhhhhhChh-HHHHhhcCccccCccccCCCceeccCC----------CCCCcccceeecccccccCC------
Q 031946 3 GGGGCDGAIRRAAGPE-LLEACYRVPEVGFGIRCPTGEARITPG----------FKLPASHVIHTVGPIYGVTI------ 65 (150)
Q Consensus 3 ~~ggv~~aI~~~~G~~-l~~e~~~~~~~~~~~~~~~G~~~~t~~----------~~L~~k~IiH~v~P~~~~~~------ 65 (150)
||||.+.||.++.|.+ ++..+++... +.-.++|++-+..- .+-.++||+|+.+..-....
T Consensus 82 MgGGFDLai~~~fggk~~E~~~r~~l~---~~y~pvGs~tvIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~ 158 (280)
T PF14519_consen 82 MGGGFDLAISEYFGGKPFENWFRAQLG---ERYHPVGSCTVIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREV 158 (280)
T ss_dssp --SHHHHHHHHHHTSHHHHHHHHHHTT---TS---TT--EEEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-
T ss_pred CCCchhHHHHHHhCCchhHHHHHHHHh---ccccCCCeeEEEECchhhhhhhcccccCceEEEECCccccCCCcccchhH
Confidence 7999999999997654 5555665442 22367887655432 22457899999875433321
Q ss_pred ---ChhhhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 66 ---NPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 66 ---~~~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
...+.+-++++|.+..+. ..+++|.+|.||||..|+|++.+|+.|+-|++-|.
T Consensus 159 ~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV~p~~sAk~M~fAl~l~~ 214 (280)
T PF14519_consen 159 PYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGVPPEISAKQMAFALRLYN 214 (280)
T ss_dssp TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 123456778889888775 46999999999999999999999999999999986
No 20
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=98.52 E-value=1.1e-07 Score=74.19 Aligned_cols=87 Identities=22% Similarity=0.328 Sum_probs=72.8
Q ss_pred ceeecccccccC-----C---ChhhhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHH---HHhhc
Q 031946 53 VIHTVGPIYGVT-----I---NPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVK---EFAND 121 (150)
Q Consensus 53 IiH~v~P~~~~~-----~---~~~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~---~~~~~ 121 (150)
||=++.|++... . +..+.+++-++.+|..|..+|.+++.+.++|||.|+.|+.++|+++.+.+. +|...
T Consensus 164 vIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA~GCG~f~N~p~~VA~~f~evL~~~~ef~g~ 243 (266)
T TIGR02452 164 FITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGAWGCGVFGNDPAEVAKIFHDLLSPGGIFKGR 243 (266)
T ss_pred EEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccCCCHHHHHHHHHHHhccCccccCc
Confidence 566667776421 1 235789999999999999999999999999999999999999999999998 67778
Q ss_pred hhhhhhhheech----hhHHHH
Q 031946 122 FKEVHFVLFTDD----LYNLWL 139 (150)
Q Consensus 122 l~~V~~v~~~~~----~~~~f~ 139 (150)
|++|+|.+.|.. .+++|+
T Consensus 244 F~~VvFAI~d~~~~~~~~~~F~ 265 (266)
T TIGR02452 244 IKEVVFAILDRHGQSTNTQIFR 265 (266)
T ss_pred eeEEEEEEeCCCCCCcHHhHhh
Confidence 999999999844 567765
No 21
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.64 E-value=0.00016 Score=54.78 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=68.1
Q ss_pred hhhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh---hchhhhhhhheech--hhHHHHHHH
Q 031946 68 EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA---NDFKEVHFVLFTDD--LYNLWLEKA 142 (150)
Q Consensus 68 ~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~---~~l~~V~~v~~~~~--~~~~f~~~~ 142 (150)
.+.|..-++++|.+|..++.+-+.+-+.|||.|+-.+..+|+++.+.+.+=. ..++.|+|.+.|.. +..+|++++
T Consensus 199 ~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~g~fkhv~FavlD~n~~~~~iFr~el 278 (285)
T COG4295 199 REALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKLGDFKHVVFAVLDRNMTIVNIFRKEL 278 (285)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhhcccceEEEEEecCCchHHHHHHHHH
Confidence 4678888999999999999999999999999999999999999998887654 46888999888855 688999887
Q ss_pred Hhh
Q 031946 143 REL 145 (150)
Q Consensus 143 ~~~ 145 (150)
+.+
T Consensus 279 e~f 281 (285)
T COG4295 279 EYF 281 (285)
T ss_pred Hhh
Confidence 654
No 22
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=97.58 E-value=0.00029 Score=50.77 Aligned_cols=107 Identities=15% Similarity=0.071 Sum_probs=73.2
Q ss_pred CC-CCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCC----CC-cccceeecccccccCC----ChhhhHH
Q 031946 3 GG-GGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFK----LP-ASHVIHTVGPIYGVTI----NPEASLR 72 (150)
Q Consensus 3 ~~-ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~----L~-~k~IiH~v~P~~~~~~----~~~~~L~ 72 (150)
.| ||++.||.++. |+..+.-++.-+ .+.+..|++.+.+-.. .. ..+|...++....+.. -+...|+
T Consensus 32 WG~gGia~al~~k~-p~~~~~Y~~~~~---~~dl~LG~~~li~v~~~~~~~~~~~~va~l~~q~~~~~~~~~~~~~~aL~ 107 (152)
T cd03331 32 WGRGGLFTALEKRS-DQPRKAYELAGK---MKDLHLGDLHLFPIDDKNSRLKGPDWVALIVAQHRDKSNPLSGIKLSALE 107 (152)
T ss_pred CCcchHHHHHHHhC-CcHHHHHHHHHh---cCCCccccEEEEEeccccCCCCCCeEEEEEEeEccCCCCCCCccCHHHHH
Confidence 35 79999999998 554444443221 1357789888765321 11 3578888887654431 2467888
Q ss_pred HHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHH
Q 031946 73 SAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAIST 114 (150)
Q Consensus 73 ~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~ 114 (150)
+|+.++-..|.+ +-.||.+|-||+|.+|.|=+..-+++-+.
T Consensus 108 ~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li~k~ 148 (152)
T cd03331 108 KGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLIRKY 148 (152)
T ss_pred HHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHHHHH
Confidence 888888777766 45889999999999999888777665443
No 23
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=97.23 E-value=0.0011 Score=56.23 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=86.9
Q ss_pred cccCCCceeccCCCCCC-cccceeeccccc-ccCC-ChhhhHHHHhhhhhhhhhhcCceeeeecceeccccccch-----
Q 031946 33 IRCPTGEARITPGFKLP-ASHVIHTVGPIY-GVTI-NPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPH----- 104 (150)
Q Consensus 33 ~~~~~G~~~~t~~~~L~-~k~IiH~v~P~~-~~~~-~~~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~----- 104 (150)
..+.+||+.+|.--||. +.-|+|.|.-.- ..+. ++..-+-..++|+|+.|-++++.+|.+|++-+....-..
T Consensus 370 ~~l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc 449 (510)
T PF10154_consen 370 STLKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWC 449 (510)
T ss_pred CcCCCCceEEecccCcccceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHH
Confidence 35789999999999997 567889885432 1111 456778889999999999999999999999887533221
Q ss_pred hHHHHHHHHHHHHHhh--------chhhhhhhheec---hhhHHHHHHHHhhcccC
Q 031946 105 EEAATIAISTVKEFAN--------DFKEVHFVLFTD---DLYNLWLEKARELLSFS 149 (150)
Q Consensus 105 ~~~a~~~l~~i~~~~~--------~l~~V~~v~~~~---~~~~~f~~~~~~~f~~~ 149 (150)
-.=|+..+..++-|+- ..+.|.|++.+. +.|..|...+..+|..+
T Consensus 450 ~~Raelv~k~vkg~~~e~~~~~~~~~~tvqf~~P~~~~~~~f~~~~~~~~~~fr~~ 505 (510)
T PF10154_consen 450 LKRAELVFKCVKGFMMEMASWGGGESRTVQFLLPQGISDEMFTQLSNMLPSIFRVS 505 (510)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCccceeEEEeCCCCCCHHHHHHHHhhchhhhccc
Confidence 2235666777777762 236788877654 57889999999998765
No 24
>PHA00684 hypothetical protein
Probab=71.92 E-value=8.2 Score=26.91 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=43.6
Q ss_pred hhhhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHH
Q 031946 67 PEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTV 115 (150)
Q Consensus 67 ~~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i 115 (150)
+.+.++..+..-+.-|.++--.+.-++.||||+.|+..++.|..+.++.
T Consensus 54 ~l~~I~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF~~a~ 102 (128)
T PHA00684 54 SLPDIGAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMFRDAP 102 (128)
T ss_pred cHHHHHHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHHhcCC
Confidence 4578999999999999999999999999999999999999998876554
No 25
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=66.31 E-value=8.2 Score=31.33 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=30.6
Q ss_pred cccceeecccccccCCC-hhhhH---HHHhhhhhhhhhhcC-ceeeeecc
Q 031946 50 ASHVIHTVGPIYGVTIN-PEASL---RSAYKNSLSLAKANN-IQYIAFPA 94 (150)
Q Consensus 50 ~k~IiH~v~P~~~~~~~-~~~~L---~~~~~~~L~~a~~~~-~~sia~P~ 94 (150)
|++|+|++.|.-....+ +.+.+ -+...|+|+.|.+.+ ++.|.+..
T Consensus 79 cdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TS 128 (327)
T KOG1502|consen 79 CDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTS 128 (327)
T ss_pred CCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEec
Confidence 99999999996543322 22333 455678888888776 77777753
No 26
>PHA03033 hypothetical protein; Provisional
Probab=66.21 E-value=4.8 Score=28.09 Aligned_cols=52 Identities=10% Similarity=-0.042 Sum_probs=34.1
Q ss_pred CCCCCCch-hhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccC
Q 031946 1 MLGGGGCD-GAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVT 64 (150)
Q Consensus 1 l~~~ggv~-~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~ 64 (150)
+.||.|++ --+.+..|. -+|.+++ ...+|++.+-.-.+ +||+..++-.|-++
T Consensus 30 ~~MGaGIA~v~FKkkyg~--V~eLk~Q-------kk~~GeVAvLk~d~---RyIYYLITKdyie~ 82 (142)
T PHA03033 30 FILCKDDCFIYIKKKYNS--IKELKKQ-------KKKKGEVAYIYKNN---KYIIYIIIADYIED 82 (142)
T ss_pred hhcCCChhhhhHHHHhCC--HHHHHhh-------ccCCCeEEEEecCC---EEEEEEEeHHHHHH
Confidence 46899999 777776665 3335544 24567766544443 89999998877653
No 27
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=60.02 E-value=15 Score=28.82 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=30.0
Q ss_pred CcccceeecccccccCC-Chh---hhHHHHhhhhhhhhhhcCceeeeec
Q 031946 49 PASHVIHTVGPIYGVTI-NPE---ASLRSAYKNSLSLAKANNIQYIAFP 93 (150)
Q Consensus 49 ~~k~IiH~v~P~~~~~~-~~~---~~L~~~~~~~L~~a~~~~~~sia~P 93 (150)
.|+.|||++.|.-..+. ..+ +.=-...+++|+.|.+.+++.+.+.
T Consensus 66 g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVyt 114 (280)
T PF01073_consen 66 GVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYT 114 (280)
T ss_pred CCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 37899999987433221 111 2223677889999999898877663
No 28
>CHL00194 ycf39 Ycf39; Provisional
Probab=56.06 E-value=45 Score=26.14 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=28.6
Q ss_pred CcccceeecccccccCCChhhhHHHHhhhhhhhhhhcCceeeee
Q 031946 49 PASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAF 92 (150)
Q Consensus 49 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sia~ 92 (150)
.++.|||++++.|.....-.+.=.....+.++.|.+.|++.+.+
T Consensus 64 g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 64 GVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIF 107 (317)
T ss_pred CCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 36899999877654322111112345678888888889887765
No 29
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=54.94 E-value=19 Score=27.74 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=34.3
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
.+.++++++.|.+.|++.+.+=+++|.++.=|++++...|
T Consensus 36 ~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm 75 (230)
T PRK14837 36 LKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLM 75 (230)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 4466777888889999999999999999999999988554
No 30
>PLN02214 cinnamoyl-CoA reductase
Probab=54.03 E-value=14 Score=29.48 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=27.4
Q ss_pred cccceeecccccccCCChhhhH---HHHhhhhhhhhhhcCceeeeec
Q 031946 50 ASHVIHTVGPIYGVTINPEASL---RSAYKNSLSLAKANNIQYIAFP 93 (150)
Q Consensus 50 ~k~IiH~v~P~~~~~~~~~~~L---~~~~~~~L~~a~~~~~~sia~P 93 (150)
+++|||+++|.... ..+.+ -....++++.|.+.+.+.+.+.
T Consensus 82 ~d~Vih~A~~~~~~---~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 82 CDGVFHTASPVTDD---PEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred CCEEEEecCCCCCC---HHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 78999999986432 12222 2356778888888888766653
No 31
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=50.60 E-value=61 Score=26.56 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=28.8
Q ss_pred CcccceeecccccccCCChhhhHHHHhhhhhhhhhhcCceeeeec
Q 031946 49 PASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFP 93 (150)
Q Consensus 49 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sia~P 93 (150)
+++.|||++++.+.......+.-.....++++.|.+.|.+.+.+.
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 478999998875432221112223456688888888888876653
No 32
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=49.75 E-value=25 Score=26.97 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=36.9
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
.+.++++++.|.+.|++.+.+=+++|-++.=|++++...| +-+.+++
T Consensus 29 ~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm-~L~~~~l 75 (226)
T TIGR00055 29 VKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLM-ELFEKKL 75 (226)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHH-HHHHHHH
Confidence 3466777888889999999999999999999999987554 3444443
No 33
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=48.23 E-value=29 Score=26.55 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=36.3
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
.+.+.+++..|.+.|++.+.+=++++.++.=|++++...| .-+..++
T Consensus 30 ~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm-~l~~~~l 76 (221)
T cd00475 30 AEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLM-ELFRDVL 76 (221)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHH-HHHHHHH
Confidence 3456677778889999999999999999999999987543 4444443
No 34
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=45.13 E-value=33 Score=26.64 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=36.7
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
.+.+.++++.|.+.|++.|.+=++++.++.=|++++... +..+.+++
T Consensus 38 ~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~L-m~L~~~~l 84 (241)
T PRK14842 38 ANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSI-FGLLVEFI 84 (241)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHH-HHHHHHHH
Confidence 345667778888999999999999999999999888754 44444444
No 35
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.82 E-value=31 Score=26.58 Aligned_cols=47 Identities=11% Similarity=0.188 Sum_probs=36.4
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
.+.++++++.|.+.|++.|.+=++++.++.=|++++...| +-+.+++
T Consensus 34 ~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm-~L~~~~l 80 (233)
T PRK14833 34 VKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLM-KLLKKYL 80 (233)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHH-HHHHHHH
Confidence 3456677777888999999999999999999999887554 4444443
No 36
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=43.34 E-value=36 Score=26.25 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=33.8
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
.+.+.++++.|.+.|++.|.+=++++.++.=|++++...|
T Consensus 33 ~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm 72 (233)
T PRK14841 33 AEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLM 72 (233)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHH
Confidence 3456677788889999999999999999999999987554
No 37
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.70 E-value=40 Score=26.39 Aligned_cols=40 Identities=23% Similarity=0.161 Sum_probs=34.4
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
.+.++++++.|.+.|++.+.+=++++.++.=|++++...|
T Consensus 48 ~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm 87 (253)
T PRK14832 48 ARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLM 87 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 4466777888889999999999999999999999987655
No 38
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=41.18 E-value=28 Score=24.56 Aligned_cols=36 Identities=31% Similarity=0.383 Sum_probs=28.2
Q ss_pred CcccceeecccccccCCChhhhHHHHhhhhhhhhhhcCceeeee
Q 031946 49 PASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAF 92 (150)
Q Consensus 49 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sia~ 92 (150)
+|+.|||+++|.+.. ...++++++.+.+.+.+.+.+
T Consensus 60 ~~d~vi~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 60 GADAVIHAAGPPPKD--------VDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp TSSEEEECCHSTTTH--------HHHHHHHHHHHHHTTSSEEEE
T ss_pred hcchhhhhhhhhccc--------cccccccccccccccccccee
Confidence 489999999887651 667778888888888877665
No 39
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.10 E-value=41 Score=26.26 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=33.8
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
.+.++++++.|.+.|++.|.+=++++.++.=|++++...|
T Consensus 52 ~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm 91 (250)
T PRK14840 52 AKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELF 91 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 3456677778889999999999999999999999987554
No 40
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.06 E-value=40 Score=27.00 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=33.9
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
.+.+.++++.|.+.|++.|.+=++++.++.=|++++...|
T Consensus 97 ~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm 136 (296)
T PRK14827 97 EAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLM 136 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHH
Confidence 4456778888889999999999999999999999876443
No 41
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.69 E-value=41 Score=26.11 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=36.3
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
.+.+.++++.|.+.|++.|.+=++++.++.=|++++...| +.+.+++
T Consensus 40 ~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm-~l~~~~l 86 (242)
T PRK14838 40 AETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALM-SLLLDSI 86 (242)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHH-HHHHHHH
Confidence 4456677788889999999999999999999998887543 3344433
No 42
>KOG4506 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.50 E-value=31 Score=28.86 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=43.7
Q ss_pred ccCCCceeccCCCCCC-cccceeecccc-cccC-CChhhhHHHHhhhhhhhhhhcCceeeeecceecc
Q 031946 34 RCPTGEARITPGFKLP-ASHVIHTVGPI-YGVT-INPEASLRSAYKNSLSLAKANNIQYIAFPAISCG 98 (150)
Q Consensus 34 ~~~~G~~~~t~~~~L~-~k~IiH~v~P~-~~~~-~~~~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG 98 (150)
.+-+|++.++...++. ...++|.+.-. ...+ .+.+.---..++|+++.|..+++++|.+|.|-..
T Consensus 416 nllP~eal~qd~sc~seihiafHL~VDd~lkS~eInaR~P~iaGlRNIiktaar~d~sTIhIPLLLid 483 (598)
T KOG4506|consen 416 NLLPGEALIQDHSCLSEIHIAFHLCVDDHLKSGEINARDPAIAGLRNIIKTAARHDISTIHIPLLLID 483 (598)
T ss_pred hcCchhhhhcCccccchhheeeEeeehhhhhcCCccCcCcHHHHHHHHHHHHHhcCCceeeeeeEEec
Confidence 3556888888776664 33456665432 2222 1333344467899999999999999999998654
No 43
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=40.42 E-value=42 Score=26.41 Aligned_cols=41 Identities=24% Similarity=0.152 Sum_probs=35.1
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAI 112 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l 112 (150)
-.++...|+.|.+.|++.|.+=+.++.+++=|++++-..|-
T Consensus 66 f~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~ 106 (271)
T KOG1602|consen 66 FEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMD 106 (271)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHH
Confidence 34667788999999999999999999999999998866553
No 44
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.38 E-value=42 Score=26.02 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=32.7
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATI 110 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~ 110 (150)
.+.+.+++..|.+.|++.|.+=+++++++.=|.+++...
T Consensus 44 ~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~l 82 (243)
T PRK14829 44 EPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFL 82 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHH
Confidence 345667777788999999999999999999999887744
No 45
>PRK05086 malate dehydrogenase; Provisional
Probab=40.35 E-value=1.9e+02 Score=23.06 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=47.1
Q ss_pred cccceeecccccccCCChhhhHHH---HhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHH
Q 031946 50 ASHVIHTVGPIYGVTINPEASLRS---AYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 118 (150)
Q Consensus 50 ~k~IiH~v~P~~~~~~~~~~~L~~---~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~ 118 (150)
++.||-++|..-..+....+.|.. .++++.+...+.+.+.+.+ +..-|.|..+.++.+++.++
T Consensus 70 ~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivi------vvsNP~D~~t~~~~~~~~~~ 135 (312)
T PRK05086 70 ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIG------IITNPVNTTVAIAAEVLKKA 135 (312)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------EccCchHHHHHHHHHHHHHh
Confidence 788999998765444334567777 8888888888888887776 45578888888888777766
No 46
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=40.31 E-value=48 Score=25.16 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=30.1
Q ss_pred HhhhhhhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 74 AYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 74 ~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
.++++++.|.+.|++.|.+=++++.++.=|++++...|
T Consensus 26 ~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm 63 (223)
T PF01255_consen 26 KLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALM 63 (223)
T ss_dssp HHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHH
Confidence 45667777788999999999999999999999986554
No 47
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.23 E-value=43 Score=26.00 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=33.6
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
...+.++++.|.+.|++.|.+=++++.++.=|++++...|
T Consensus 39 ~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm 78 (239)
T PRK14839 39 VEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLM 78 (239)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHH
Confidence 3456677778889999999999999999999999887554
No 48
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.50 E-value=40 Score=26.27 Aligned_cols=39 Identities=26% Similarity=0.194 Sum_probs=32.8
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATI 110 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~ 110 (150)
.+.+.+++..|.+.|++.|.+=++++.++.=|.+++...
T Consensus 50 ~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~L 88 (249)
T PRK14831 50 VDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFL 88 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHH
Confidence 345667777888999999999999999999999888644
No 49
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.58 E-value=57 Score=25.44 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=32.8
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATI 110 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~ 110 (150)
.+.+.+++..|.+.|++.|.+=++++.++.=|++++...
T Consensus 44 ~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~L 82 (249)
T PRK14834 44 VEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDL 82 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHH
Confidence 345666777788999999999999999999999888754
No 50
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.37 E-value=52 Score=25.29 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=35.3
Q ss_pred HHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 73 SAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 73 ~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
+.+.+++..|.+.|++.|.+=++++-++.=|++++... +..+.+++
T Consensus 24 ~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~L-m~l~~~~l 69 (229)
T PRK10240 24 KSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSAL-MELFVWAL 69 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHH-HHHHHHHH
Confidence 35566777778899999999999999999888888744 34444443
No 51
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=37.34 E-value=33 Score=22.88 Aligned_cols=41 Identities=15% Similarity=0.046 Sum_probs=31.2
Q ss_pred ccceeecccccccCCChhhhHHHHhhhhhhhhhhcCceeeeecc
Q 031946 51 SHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPA 94 (150)
Q Consensus 51 k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sia~P~ 94 (150)
-.|-|+..|.|-.+.- .=+.-+..+++.|.+.+++-|.+++
T Consensus 40 i~i~HT~V~d~lrGqG---ia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 40 IIIDHTYVPDELRGQG---IAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred EEEecCcCCHHHcCCc---HHHHHHHHHHHHHHHcCCeEcccch
Confidence 3677999999877652 2234567889999999999888765
No 52
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=37.27 E-value=43 Score=21.81 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHhh----chh---hhhhhheechhhHHHHHHHHhhcc
Q 031946 104 HEEAATIAISTVKEFAN----DFK---EVHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 104 ~~~~a~~~l~~i~~~~~----~l~---~V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
.++-++.+++.++.-++ +++ ++.+.+.|.+.+..+.+...++|+
T Consensus 24 ~~~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~ 74 (101)
T cd06155 24 VEEQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFD 74 (101)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcC
Confidence 34455555666666654 343 344555667789999999998886
No 53
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=36.34 E-value=52 Score=26.72 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=34.8
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
.+.++++++.|.+.|++.+.+=++++-++.=|++++.-.|
T Consensus 49 ~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm 88 (322)
T PTZ00349 49 SKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLF 88 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHH
Confidence 3466778888899999999999999999999999997655
No 54
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=36.10 E-value=41 Score=27.01 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=21.6
Q ss_pred eeecceeccccccchhHHHHHHHHHHHH
Q 031946 90 IAFPAISCGLYCYPHEEAATIAISTVKE 117 (150)
Q Consensus 90 ia~P~lgtG~~~~p~~~~a~~~l~~i~~ 117 (150)
.-+|.||-|.+..++..+.+++..++..
T Consensus 13 ~~mP~iGlGTw~~~~~~~~~aV~~Al~~ 40 (300)
T KOG1577|consen 13 FKMPIIGLGTWQSPPGQVAEAVKAAIKA 40 (300)
T ss_pred CccceeeeEecccChhhHHHHHHHHHHh
Confidence 3468888888888888888887777754
No 55
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.90 E-value=60 Score=25.69 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=33.5
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
.+.+.++++.|.+.|++.|.+=++++.++.=|++++...|
T Consensus 71 ~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm 110 (275)
T PRK14835 71 VQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLM 110 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHH
Confidence 3456677778889999999999999999999998887653
No 56
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.75 E-value=62 Score=25.30 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=33.9
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
.+.+.++++.|.+.|++.|.+=++++.++.=|.+++...|
T Consensus 57 ~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm 96 (256)
T PRK14828 57 AAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLL 96 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHH
Confidence 3456677788889999999999999999999998887655
No 57
>PTZ00325 malate dehydrogenase; Provisional
Probab=35.65 E-value=59 Score=26.21 Aligned_cols=44 Identities=9% Similarity=0.042 Sum_probs=33.7
Q ss_pred CcccceeecccccccCCChhhhHHH---HhhhhhhhhhhcCceeeee
Q 031946 49 PASHVIHTVGPIYGVTINPEASLRS---AYKNSLSLAKANNIQYIAF 92 (150)
Q Consensus 49 ~~k~IiH~v~P~~~~~~~~~~~L~~---~~~~~L~~a~~~~~~sia~ 92 (150)
.|+.|+|++|+.-..+....+.|.. .++++.+...+.+.+.+.+
T Consensus 76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~ivi 122 (321)
T PTZ00325 76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVG 122 (321)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3889999999865443333566766 8888998888999888776
No 58
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=34.49 E-value=70 Score=24.76 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=25.7
Q ss_pred cccceeecccccccCCChh-hhH---HHHhhhhhhhhhhc-Cceeeee
Q 031946 50 ASHVIHTVGPIYGVTINPE-ASL---RSAYKNSLSLAKAN-NIQYIAF 92 (150)
Q Consensus 50 ~k~IiH~v~P~~~~~~~~~-~~L---~~~~~~~L~~a~~~-~~~sia~ 92 (150)
+++|||+++|......... ..+ -....++|+.|.+. +.+.+.+
T Consensus 77 ~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~ 124 (322)
T PLN02662 77 CEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVV 124 (322)
T ss_pred CCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 6899999998532211121 222 24456777777665 7776665
No 59
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=33.88 E-value=1.2e+02 Score=24.16 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=39.6
Q ss_pred ccceeecccccccCCChhhhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 51 SHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 51 k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
.|+|....|.- ...+.=.+++...++.|+..|+..|.|=+=+. .+-+++++-+-+.+++.+-+
T Consensus 69 pYlINl~s~~~----e~~ekS~~~l~~e~~r~~~lG~~~lv~HpG~~--~~~~~e~~l~~i~~~Ln~~~ 131 (280)
T COG0648 69 PYLINLASPEK----EKVEKSIERLIDEIDRCEQLGAKLLVFHPGSY--LGQGKEEGLNRIAEALNELL 131 (280)
T ss_pred ceeecCCCCCH----HHHHHHHHHHHHHHHHHHHcCCcEEEECCccc--cCCCHHHHHHHHHHHHHHHh
Confidence 46666665541 11234456667778888999999999943222 22337777777777775544
No 60
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=33.40 E-value=1.2e+02 Score=26.03 Aligned_cols=100 Identities=15% Similarity=0.244 Sum_probs=61.3
Q ss_pred CCCCcccceeeccccccc-----CC---------ChhhhHHHHhhhhhhhhh------hcCceeeeecceeccccccch-
Q 031946 46 FKLPASHVIHTVGPIYGV-----TI---------NPEASLRSAYKNSLSLAK------ANNIQYIAFPAISCGLYCYPH- 104 (150)
Q Consensus 46 ~~L~~k~IiH~v~P~~~~-----~~---------~~~~~L~~~~~~~L~~a~------~~~~~sia~P~lgtG~~~~p~- 104 (150)
..++++|.+-++|-.-+. -. ...+.++..+-.+|+.|+ +..-+.+.|-..|-|-.|+.-
T Consensus 155 ~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFA 234 (491)
T KOG2495|consen 155 FVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFA 234 (491)
T ss_pred eeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeeh
Confidence 456788988888743221 00 246889999999999884 345577888888888877643
Q ss_pred hHHHHHHHHHHHHHhhchh-hhhhhhee--chhhHHHHHHHHhh
Q 031946 105 EEAATIAISTVKEFANDFK-EVHFVLFT--DDLYNLWLEKAREL 145 (150)
Q Consensus 105 ~~~a~~~l~~i~~~~~~l~-~V~~v~~~--~~~~~~f~~~~~~~ 145 (150)
.+.+.-+.+-++.+...++ +|.+.+.. +.+++.|.+.+-.|
T Consensus 235 aEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~y 278 (491)
T KOG2495|consen 235 AELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEY 278 (491)
T ss_pred HHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHH
Confidence 2333334444555544443 45444433 34788887665543
No 61
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=32.10 E-value=80 Score=21.12 Aligned_cols=25 Identities=16% Similarity=0.009 Sum_probs=16.7
Q ss_pred hhhhhheechhhHHHHHHHHhhccc
Q 031946 124 EVHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 124 ~V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
++.+.+.|.+.+..+.+.++.+|+.
T Consensus 68 ~~~~yl~d~~~~~~~~~v~~~~f~~ 92 (121)
T PF01042_consen 68 KVTVYLTDMSDFPAVNEVWKEFFPD 92 (121)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHSTS
T ss_pred eeeehhhhhhhhHHHHHHHHHHhcc
Confidence 3444455556688888888888765
No 62
>KOG3716 consensus Carnitine O-acyltransferase CPTI [Lipid transport and metabolism]
Probab=31.19 E-value=75 Score=28.52 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=42.8
Q ss_pred hhhhHHHHhhhhhhhhhhcCceeeeecceeccc---cccchhHHHHHHHHHH
Q 031946 67 PEASLRSAYKNSLSLAKANNIQYIAFPAISCGL---YCYPHEEAATIAISTV 115 (150)
Q Consensus 67 ~~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~---~~~p~~~~a~~~l~~i 115 (150)
..+.++.||..+=.++++..+.+++|...|-|. .+++||...|.+++-.
T Consensus 517 ~~~~I~~~~~~~~~l~~Dv~~~~~~f~dfGKg~iKKc~vSPDafiQmAlQLA 568 (764)
T KOG3716|consen 517 CLDEIERAYEAAKKLADDVDLHSLVFTDFGKGFIKKCGVSPDAFIQMALQLA 568 (764)
T ss_pred HHHHHHHHHHHHHHHhhhchheeeeehhhcchhHHhcCCCchHHHHHHHHHH
Confidence 467888888888889999999999999999995 8899999998888654
No 63
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.05 E-value=79 Score=24.65 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=37.3
Q ss_pred hhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 69 ASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 69 ~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
..-.+.+.+++..|.+.|++.|.+=++++.++.=|.+++...|
T Consensus 49 ~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm 91 (251)
T PRK14830 49 KAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLM 91 (251)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHH
Confidence 4556677888889999999999999999999999998887665
No 64
>PRK07475 hypothetical protein; Provisional
Probab=30.02 E-value=91 Score=23.95 Aligned_cols=97 Identities=12% Similarity=0.163 Sum_probs=49.8
Q ss_pred ccCCCceeccCCCCCCccc-ceeecccccccCCChhhhHHHHhhhhhhhhhhcCceeeeecceec---------cccccc
Q 031946 34 RCPTGEARITPGFKLPASH-VIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPAISC---------GLYCYP 103 (150)
Q Consensus 34 ~~~~G~~~~t~~~~L~~k~-IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sia~P~lgt---------G~~~~p 103 (150)
+..+||+.--..+..|..| ++.-+.|.---. .....+...+..+.+..++.|.+.|++|+ ++ ...++|
T Consensus 26 p~~pgd~~~~~t~~~pv~~~~v~g~~~~~~~~-~~~~~~~~~l~~aa~~L~~~G~d~I~~~C-gt~~~~~~~l~~~~~VP 103 (245)
T PRK07475 26 PRIPGDVGNAATWPFPVRYKVVRGATPERVVE-GDDPSLLDAFVAAARELEAEGVRAITTSC-GFLALFQRELAAALGVP 103 (245)
T ss_pred CCCCCCCCCcccCCcCEEEEeeCCCCHHHHhc-CCCccHHHHHHHHHHHHHHcCCCEEEech-HHHHHHHHHHHHHcCCC
Confidence 4566777554555444332 222222211000 12245667777778888889999999987 32 123455
Q ss_pred hhHHHHHHHHHHHHHhhchhhhhhhheec
Q 031946 104 HEEAATIAISTVKEFANDFKEVHFVLFTD 132 (150)
Q Consensus 104 ~~~~a~~~l~~i~~~~~~l~~V~~v~~~~ 132 (150)
.-..+...+..++......++|-++..+.
T Consensus 104 v~~ss~~~v~~l~~~~~~~~kIGILtt~~ 132 (245)
T PRK07475 104 VATSSLLQVPLIQALLPAGQKVGILTADA 132 (245)
T ss_pred EeccHHHHHHHHHHhccCCCeEEEEeCCc
Confidence 55555455555544432123444443333
No 65
>PF15162 DUF4580: Domain of unknown function (DUF4580)
Probab=29.97 E-value=90 Score=22.68 Aligned_cols=64 Identities=11% Similarity=0.239 Sum_probs=43.0
Q ss_pred hhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhchhh----hhhhheechhhHHHHHHHHhhcc
Q 031946 82 AKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKE----VHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 82 a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~l~~----V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
.+...-.||.||.=|..-.-.+..++-. ++..+.+|.+..++ +.--..+++.|+...+. ++++.
T Consensus 34 S~sve~~svIFpLSGvAFLL~d~~~~~~-~l~ki~kF~~ihrNsflvL~aalhg~~ew~~m~~i-qRFLG 101 (162)
T PF15162_consen 34 SDSVEPGSVIFPLSGVAFLLMDAQECFM-FLAKIEKFIDIHRNSFLVLSAALHGPEEWKLMFRI-QRFLG 101 (162)
T ss_pred cccccCCeEEEEcccceeeEeccHHHhh-HHHHHHHHHhccCCceEEeehhhcCHHHHHHHHHH-HHHhc
Confidence 3444556999999888888888888776 88888899874433 22344555666666665 44443
No 66
>PF02789 Peptidase_M17_N: Cytosol aminopeptidase family, N-terminal domain; InterPro: IPR008283 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The two zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3PEI_A 1GYT_C 3JRU_A 3H8F_D 3H8G_F 3H8E_A 3KZW_L 1LAP_A 1LAN_A 1LCP_B ....
Probab=29.60 E-value=1.7e+02 Score=19.25 Aligned_cols=98 Identities=20% Similarity=0.090 Sum_probs=55.0
Q ss_pred hhhhhhChhHHHHhhcCccccCccccCCCceeccCC-CCCCcccceeecccccccCCChhhhHHHHhhhhhhhhhhcCce
Q 031946 10 AIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPG-FKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQ 88 (150)
Q Consensus 10 aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~-~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~ 88 (150)
++-+..+..+...++... . .-+.|++..-.. ...+.+.|+-+-...-.. -..+.++++.-.+.+.+.+.+.+
T Consensus 16 ~ld~~~~~~l~~~~~~~~---f--~gk~ge~~~l~~~~~~~~~~v~lvGlG~~~~--~~~~~~r~a~~~~~~~l~~~~~~ 88 (126)
T PF02789_consen 16 ALDKALDGLLSRLIKAGD---F--KGKAGETLLLPGPGGIKAKRVLLVGLGKKEK--LTAESLRKAGAAAARALKKLKVK 88 (126)
T ss_dssp HHHHHTTTHHHHHHHTTS---S----STT-EEEEEEETTTSCSEEEEEEEESCTG--BCHHHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHHHhCC---C--CCCCCcEEEEecCCCCCccEEEEEECCCcCc--CCHHHHHHHHHHHHHHHhhCCce
Confidence 344445555555554432 1 335676665443 334456666553322110 13578999999999999999999
Q ss_pred eeeecceeccccccchhHHHHHHHHHHHH
Q 031946 89 YIAFPAISCGLYCYPHEEAATIAISTVKE 117 (150)
Q Consensus 89 sia~P~lgtG~~~~p~~~~a~~~l~~i~~ 117 (150)
++++..- .-....+..++.+.+.+..
T Consensus 89 ~v~i~l~---~~~~~~~~~~~~~~~g~~l 114 (126)
T PF02789_consen 89 SVAIDLP---IDGENSDEAAEAAAEGALL 114 (126)
T ss_dssp EEEEEGC---SSBTTCHHHHHHHHHHHHH
T ss_pred EEEEeCc---ccccCcHHHHHHHHHHHHH
Confidence 9998765 2223333667776666643
No 67
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=29.55 E-value=1.9e+02 Score=21.78 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=33.3
Q ss_pred hHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh
Q 031946 70 SLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN 120 (150)
Q Consensus 70 ~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~ 120 (150)
...+.++++++.|.+.|.+.|.++. |......+.+++-+.+.+.+++..+
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~-g~~~~~~~~~~~~~~~~~~l~~l~~ 130 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLA-GKRPAGVSPEEARATLVENLRYAAD 130 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECc-CCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999997653 2222334556666666666665543
No 68
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=29.37 E-value=1.2e+02 Score=25.49 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=37.4
Q ss_pred hhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhchhhhhhhhe
Q 031946 69 ASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLF 130 (150)
Q Consensus 69 ~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~l~~V~~v~~ 130 (150)
+.=.+.+.+.|+.|.+.|+..|.|-+ |+.....+.+++-+.+.+.+.+-+..-..|.+++.
T Consensus 214 ekSv~~~~~eL~rA~~LGa~~VV~HP-Gs~~~~~~~ee~i~~i~e~L~~~la~~~gV~IlLE 274 (413)
T PTZ00372 214 EKSYDAFLDDLQRCEQLGIKLYNFHP-GSTVGQCSKEEGIKNIADCINKAHEETKSVIIVLE 274 (413)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECC-CcCCCCCCHHHHHHHHHHHHHHHHhCcCCCEEEEe
Confidence 34456788999999999999999932 22223345566766766666554332123544444
No 69
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=29.12 E-value=89 Score=24.31 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=25.8
Q ss_pred cccceeecccccccCCCh-hhhHH---HHhhhhhhhhhhc-Cceeeeec
Q 031946 50 ASHVIHTVGPIYGVTINP-EASLR---SAYKNSLSLAKAN-NIQYIAFP 93 (150)
Q Consensus 50 ~k~IiH~v~P~~~~~~~~-~~~L~---~~~~~~L~~a~~~-~~~sia~P 93 (150)
+++|||+++|......+. .+.+. ....++|+.|.+. +++.|.+.
T Consensus 78 ~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~ 126 (322)
T PLN02986 78 CDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILT 126 (322)
T ss_pred CCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEe
Confidence 789999999853321111 12222 3445777777664 67666664
No 70
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=27.63 E-value=1.2e+02 Score=24.97 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=36.3
Q ss_pred hhhHHHHhhhhhhhhhhcCceeeee--cceeccc-cccchhHHHHHHHHH
Q 031946 68 EASLRSAYKNSLSLAKANNIQYIAF--PAISCGL-YCYPHEEAATIAIST 114 (150)
Q Consensus 68 ~~~L~~~~~~~L~~a~~~~~~sia~--P~lgtG~-~~~p~~~~a~~~l~~ 114 (150)
...|...+++.++.+...|++.|.+ |+|++|. .++..+.+.+++-.+
T Consensus 141 a~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~Al~~a 190 (344)
T PRK06052 141 AKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISALTVA 190 (344)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHHHHHH
Confidence 4677788888888889999999999 9999996 566666666554433
No 71
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=27.15 E-value=39 Score=19.80 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=12.0
Q ss_pred eeccccccchhHHHHHHHHH
Q 031946 95 ISCGLYCYPHEEAATIAIST 114 (150)
Q Consensus 95 lgtG~~~~p~~~~a~~~l~~ 114 (150)
|..|.|.++.+..|+-|++.
T Consensus 37 I~~G~Y~vd~~~iA~~ml~~ 56 (57)
T PF04316_consen 37 IASGTYKVDAEKIAEKMLDF 56 (57)
T ss_dssp HHTT-----HHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHhc
Confidence 44689999999999998875
No 72
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.10 E-value=76 Score=24.80 Aligned_cols=49 Identities=12% Similarity=0.185 Sum_probs=38.9
Q ss_pred hhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHH
Q 031946 69 ASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 118 (150)
Q Consensus 69 ~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~ 118 (150)
..-.+.+++++..|.+.|++.+.+=++++.++.=|.+++...| +-+.++
T Consensus 41 ~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm-~l~~~~ 89 (253)
T PRK14836 41 RAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALM-ELFLKA 89 (253)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHH-HHHHHH
Confidence 4556678888889999999999999999999998888876553 333333
No 73
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=27.06 E-value=83 Score=26.36 Aligned_cols=103 Identities=11% Similarity=0.061 Sum_probs=55.3
Q ss_pred ccCCCCCCcccceeeccc--ccccCC------------ChhhhHHHHhhhhhhhhhhcCc--eeeeecceeccccccchh
Q 031946 42 ITPGFKLPASHVIHTVGP--IYGVTI------------NPEASLRSAYKNSLSLAKANNI--QYIAFPAISCGLYCYPHE 105 (150)
Q Consensus 42 ~t~~~~L~~k~IiH~v~P--~~~~~~------------~~~~~L~~~~~~~L~~a~~~~~--~sia~P~lgtG~~~~p~~ 105 (150)
+.+...+++++.+=+.|- ++.+.. ++...|++-+.++++.|+...- .-+.|-..|.|-.|+...
T Consensus 92 ~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElA 171 (405)
T COG1252 92 LADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELA 171 (405)
T ss_pred eCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHH
Confidence 333477889998877762 222211 2345777777788898884443 445667788888886332
Q ss_pred HHHHHHHHHHHH-Hhhchh--hhhhhheechhhHHHHHHHHh
Q 031946 106 EAATIAISTVKE-FANDFK--EVHFVLFTDDLYNLWLEKARE 144 (150)
Q Consensus 106 ~~a~~~l~~i~~-~~~~l~--~V~~v~~~~~~~~~f~~~~~~ 144 (150)
-...-.+..+.. |..... +|.+|--.+.++..|-+.+.+
T Consensus 172 geL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~ 213 (405)
T COG1252 172 GELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSK 213 (405)
T ss_pred HHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHH
Confidence 222222222211 221112 455555555566665544443
No 74
>PRK10810 anti-sigma28 factor FlgM; Provisional
Probab=26.97 E-value=60 Score=21.64 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=21.8
Q ss_pred eccccccchhHHHHHHHHHHHHHhh
Q 031946 96 SCGLYCYPHEEAATIAISTVKEFAN 120 (150)
Q Consensus 96 gtG~~~~p~~~~a~~~l~~i~~~~~ 120 (150)
.-|.|.+..+..|+.|+....++++
T Consensus 72 ~~G~y~vD~~kIAd~Ll~~a~ell~ 96 (98)
T PRK10810 72 RNGELKMDTGKIADALIKEAQSDLQ 96 (98)
T ss_pred HcCCcccCHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999998874
No 75
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=26.27 E-value=96 Score=22.57 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=22.2
Q ss_pred HHHhhhhhhhhhhcCceeeeecceecccc
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLY 100 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~ 100 (150)
.+.++.+++...+.|+++||+..+.+-..
T Consensus 133 ~~~v~~~~~~l~~~gv~avAV~~~fS~~n 161 (176)
T PF05378_consen 133 EDEVREALRELKDKGVEAVAVSLLFSYRN 161 (176)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECccCCCC
Confidence 44567777777889999999988776543
No 76
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=25.60 E-value=79 Score=20.13 Aligned_cols=24 Identities=17% Similarity=-0.024 Sum_probs=14.4
Q ss_pred hhhhheechhhHHHHHHHHhhccc
Q 031946 125 VHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 125 V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
+.+.+.|.+.+..+.+....+|+.
T Consensus 58 ~~~yv~~~~~~~~~~~~~~~~~~~ 81 (107)
T cd00448 58 VTVYLTDMADFAAVNEVYDEFFGE 81 (107)
T ss_pred EEEEEecHHHHHHHHHHHHHHhCC
Confidence 334444556677777777776653
No 77
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=25.51 E-value=1.3e+02 Score=16.55 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=25.5
Q ss_pred hcCceeeeecce-eccccccchhHHHHHHHHHHHHHh
Q 031946 84 ANNIQYIAFPAI-SCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 84 ~~~~~sia~P~l-gtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
+.+.=.+-||.+ ++-..|-..+++.+-+.+++..|+
T Consensus 10 ~~~~y~~~~pdlpg~~t~G~t~eea~~~~~eal~~~l 46 (48)
T PF03681_consen 10 EDGGYVAYFPDLPGCFTQGDTLEEALENAKEALELWL 46 (48)
T ss_dssp TSSSEEEEETTCCTCEEEESSHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCccChhhcCCCHHHHHHHHHHHHHHHh
Confidence 445556777777 777777788888777777776664
No 78
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=25.13 E-value=91 Score=20.32 Aligned_cols=44 Identities=5% Similarity=-0.061 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHhh----chh---hhhhhheechhhHHHHHHHHhhccc
Q 031946 105 EEAATIAISTVKEFAN----DFK---EVHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 105 ~~~a~~~l~~i~~~~~----~l~---~V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
++-++..++.+..-++ +++ ++.+.+.|.+.+..+.+.+.++|+.
T Consensus 28 ~~Q~~~~~~nl~~~L~~~G~~~~dvvk~~vyl~d~~~~~~~~~~~~~~f~~ 78 (105)
T cd06150 28 TGQTRQVLAKIDALLAEAGSDKSRILSATIWLADMADFAAMNAVWDAWVPP 78 (105)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHHHcCC
Confidence 3444444444444443 233 3444555667788888888888763
No 79
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=24.64 E-value=76 Score=21.27 Aligned_cols=24 Identities=4% Similarity=-0.110 Sum_probs=14.5
Q ss_pred hhhhheechhhHHHHHHHHhhccc
Q 031946 125 VHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 125 V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
+.+.+.|.+.+..+.+.+.++|+.
T Consensus 70 ~~vyl~d~~~~~~~~~~~~~~f~~ 93 (119)
T cd06154 70 TRMYVTDIADFEAVGRAHGEVFGD 93 (119)
T ss_pred EEEEECCHHHHHHHHHHHHHHcCC
Confidence 333344556677777777777753
No 80
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=24.09 E-value=85 Score=24.96 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=28.7
Q ss_pred cccceeecccccccCC--Chhh---hHHHHhhhhhhhhhhcCceeeeecc
Q 031946 50 ASHVIHTVGPIYGVTI--NPEA---SLRSAYKNSLSLAKANNIQYIAFPA 94 (150)
Q Consensus 50 ~k~IiH~v~P~~~~~~--~~~~---~L~~~~~~~L~~a~~~~~~sia~P~ 94 (150)
+++|||.++....... .... .=-....++|+.|.+.+++.+.++.
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 6899999985332111 1111 2234566888888888988887754
No 81
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=24.05 E-value=93 Score=21.24 Aligned_cols=24 Identities=4% Similarity=0.069 Sum_probs=15.6
Q ss_pred hhhhhheechhhHHHHHHHHhhcc
Q 031946 124 EVHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 124 ~V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
++.+.+.|.+.+..+.+.+.++|+
T Consensus 73 k~~vyl~d~~~~~~~~~v~~~~f~ 96 (129)
T PRK11401 73 KMTVFITDLNDFATINEVYKQFFD 96 (129)
T ss_pred EEEEEEccHHHHHHHHHHHHHHhC
Confidence 344444555677777777777775
No 82
>PLN02778 3,5-epimerase/4-reductase
Probab=23.19 E-value=84 Score=24.57 Aligned_cols=44 Identities=7% Similarity=0.116 Sum_probs=26.7
Q ss_pred CcccceeecccccccC-----CChhhhH---HHHhhhhhhhhhhcCceeeee
Q 031946 49 PASHVIHTVGPIYGVT-----INPEASL---RSAYKNSLSLAKANNIQYIAF 92 (150)
Q Consensus 49 ~~k~IiH~v~P~~~~~-----~~~~~~L---~~~~~~~L~~a~~~~~~sia~ 92 (150)
.+++|||++++..... .+..+.+ -....++++.|.+.+++-+.+
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4799999998752211 0112222 234568888888888775544
No 83
>PF05924 SAMP: SAMP Motif; InterPro: IPR009224 This short region is found repeated in the mid region of the adenomatous polyposis proteins (APCs). This motif binds axin [].; GO: 0008013 beta-catenin binding, 0016055 Wnt receptor signaling pathway; PDB: 1EMU_B 2RQU_B.
Probab=22.45 E-value=59 Score=15.17 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=8.8
Q ss_pred hhhHHHHhhhhhh
Q 031946 68 EASLRSAYKNSLS 80 (150)
Q Consensus 68 ~~~L~~~~~~~L~ 80 (150)
+++|+.|+..++-
T Consensus 3 deiL~~CI~sAmP 15 (20)
T PF05924_consen 3 DEILQECIGSAMP 15 (20)
T ss_dssp HHHHHHHHHCTS-
T ss_pred HHHHHHHHHHhcc
Confidence 3688888877653
No 84
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=22.13 E-value=1.3e+02 Score=23.35 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=33.3
Q ss_pred hHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHH
Q 031946 70 SLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATI 110 (150)
Q Consensus 70 ~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~ 110 (150)
.-....++++..|.+.|++.+.+=+++|.+..=|.+++..+
T Consensus 44 ~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~l 84 (245)
T COG0020 44 AGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFL 84 (245)
T ss_pred HhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHH
Confidence 33456667777778889999999999999998888887763
No 85
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=21.92 E-value=45 Score=22.53 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=16.8
Q ss_pred hhhHHHHhhhhhhhhhhcCceeeeecceec
Q 031946 68 EASLRSAYKNSLSLAKANNIQYIAFPAISC 97 (150)
Q Consensus 68 ~~~L~~~~~~~L~~a~~~~~~sia~P~lgt 97 (150)
.-.+..||+.....|.++|+ .+|+..|
T Consensus 48 ~Ps~~~cyrr~~~~a~~~Gw---~iPS~~t 74 (108)
T PF09039_consen 48 KPSFSACYRRLKRAAKENGW---PIPSEKT 74 (108)
T ss_dssp ---HHHHHHHHHHHHHHHT--------HHH
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCCCHHH
Confidence 34789999999999999997 5665544
No 86
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=21.26 E-value=1.1e+02 Score=20.60 Aligned_cols=21 Identities=10% Similarity=-0.069 Sum_probs=12.5
Q ss_pred hhheechhhHHHHHHHHhhcc
Q 031946 127 FVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 127 ~v~~~~~~~~~f~~~~~~~f~ 147 (150)
+.+.+.+.+..+.+.+.++|+
T Consensus 76 vyv~~~~~~~~~~~~~~~~f~ 96 (124)
T TIGR00004 76 VFLTDLNDFAEVNEVYGQYFD 96 (124)
T ss_pred EEEeChHHHHHHHHHHHHHcC
Confidence 333455566667666666665
No 87
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=21.15 E-value=1.4e+02 Score=22.01 Aligned_cols=13 Identities=0% Similarity=0.005 Sum_probs=10.6
Q ss_pred HHHHHHHHhhccc
Q 031946 136 NLWLEKARELLSF 148 (150)
Q Consensus 136 ~~f~~~~~~~f~~ 148 (150)
..|+++++.||++
T Consensus 167 K~FS~TLKtYFKd 179 (207)
T KOG4025|consen 167 KRFSNTLKTYFKD 179 (207)
T ss_pred HHHHHHHHHHHhC
Confidence 5688888899876
No 88
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=20.95 E-value=2.6e+02 Score=22.59 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=43.1
Q ss_pred cccccCCChhhhHHHHhhhhhhhhhhcCce--------eeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 59 PIYGVTINPEASLRSAYKNSLSLAKANNIQ--------YIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 59 P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~--------sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
|.|... -..|+.|-+.+-+.|.++|.+ ++++|-.+|-..|+|.-.-.++-+++.-+-+
T Consensus 243 ~~wHPa---S~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~l 308 (342)
T KOG1576|consen 243 PPWHPA---SDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRL 308 (342)
T ss_pred CCCCCC---CHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccc
Confidence 467653 357888888888888888765 5678888888888888777777777554433
No 89
>PRK06199 ornithine cyclodeaminase; Validated
Probab=20.94 E-value=1.1e+02 Score=25.14 Aligned_cols=70 Identities=4% Similarity=0.065 Sum_probs=45.4
Q ss_pred hhHHHHhhhhhh--hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhchhhhhhhheechhhHHHHHHHHhhc
Q 031946 69 ASLRSAYKNSLS--LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKARELL 146 (150)
Q Consensus 69 ~~L~~~~~~~L~--~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~~~~f 146 (150)
-.+|.+-..++- .....+.++++ .+|||.. |+..++++......+++|++...+++..+.|.+.+...|
T Consensus 135 Ta~RTaA~salaa~~LAr~da~~l~--iiG~G~Q-------A~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~ 205 (379)
T PRK06199 135 SAYRTGAVPGVGARHLARKDSKVVG--LLGPGVM-------GKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY 205 (379)
T ss_pred hhhHHHHHHHHHHHHhccCCCCEEE--EECCcHH-------HHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc
Confidence 344444444442 22345566665 6899864 344455555544458899999999999999999998765
Q ss_pred c
Q 031946 147 S 147 (150)
Q Consensus 147 ~ 147 (150)
+
T Consensus 206 ~ 206 (379)
T PRK06199 206 P 206 (379)
T ss_pred C
Confidence 4
No 90
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=20.91 E-value=97 Score=23.65 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=26.7
Q ss_pred Ccccceeeccccc----ccCCCh--hhhHHHHhhhhhhhhhhcCceeeee
Q 031946 49 PASHVIHTVGPIY----GVTINP--EASLRSAYKNSLSLAKANNIQYIAF 92 (150)
Q Consensus 49 ~~k~IiH~v~P~~----~~~~~~--~~~L~~~~~~~L~~a~~~~~~sia~ 92 (150)
.+++|||++++.- ...+.. .+.-.....+.|+.|.+.+++.+.+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 3589999998631 111111 1122335678888888888876666
Done!