Query 031946
Match_columns 150
No_of_seqs 119 out of 1084
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 11:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1spv_A Putative polyprotein/ph 100.0 6.5E-43 2.2E-47 258.1 8.6 146 1-148 28-177 (184)
2 3q6z_A Poly [ADP-ribose] polym 100.0 6.9E-43 2.4E-47 263.0 7.0 145 1-147 62-214 (214)
3 3q71_A Poly [ADP-ribose] polym 100.0 1.7E-42 6E-47 261.6 8.0 144 2-148 66-217 (221)
4 2x47_A Macro domain-containing 100.0 9.6E-42 3.3E-46 260.1 9.7 142 1-148 87-234 (235)
5 2xd7_A Core histone macro-H2A. 100.0 7.1E-42 2.4E-46 254.3 7.8 141 1-144 47-192 (193)
6 1yd9_A Core histone macro-H2A. 100.0 1.5E-41 5E-46 252.5 8.0 144 1-147 44-192 (193)
7 4abl_A Poly [ADP-ribose] polym 100.0 2.3E-40 7.8E-45 244.0 8.0 130 1-145 47-181 (183)
8 2dx6_A Hypothetical protein TT 100.0 5E-39 1.7E-43 232.4 7.9 133 1-142 27-159 (159)
9 3kh6_A Poly [ADP-ribose] polym 100.0 2E-38 6.9E-43 236.1 8.6 132 1-147 58-194 (199)
10 3eti_A X (ADRP) domain, macro 100.0 1.6E-38 5.4E-43 231.2 5.8 129 1-143 39-167 (168)
11 1vhu_A Hypothetical protein AF 100.0 2.9E-38 1E-42 237.6 4.8 143 1-147 46-202 (211)
12 3gpg_A NSP3, non-structural pr 100.0 6.4E-37 2.2E-41 222.5 4.4 129 1-144 35-166 (168)
13 2acf_A Replicase polyprotein 1 100.0 1.1E-36 3.9E-41 224.0 4.9 130 1-149 49-178 (182)
14 3gqe_A Non-structural protein 100.0 1.1E-35 3.8E-40 216.1 6.8 131 1-145 29-161 (168)
15 3ejg_A Non-structural protein 100.0 1.1E-35 3.7E-40 219.9 3.9 126 1-143 67-192 (193)
16 3ejf_A Non-structural protein 100.0 1.1E-34 3.7E-39 212.0 6.0 127 1-142 47-175 (176)
17 2vri_A Non-structural protein 100.0 3.3E-34 1.1E-38 209.8 3.8 127 1-144 46-172 (174)
18 1njr_A 32.1 kDa protein in ADH 100.0 2.8E-33 9.5E-38 218.0 7.5 133 1-138 83-242 (284)
19 4gua_A Non-structural polyprot 100.0 4.2E-30 1.4E-34 212.1 6.3 129 1-144 369-500 (670)
20 2eee_A Uncharacterized protein 99.9 2.9E-23 9.8E-28 148.2 8.5 104 1-117 35-139 (149)
21 2jyc_A Uncharacterized protein 99.9 4E-23 1.4E-27 149.0 7.5 104 1-117 46-150 (160)
22 2fg1_A Conserved hypothetical 99.8 7.4E-22 2.5E-26 142.1 6.2 111 1-117 32-148 (158)
23 3sig_A PArg, poly(ADP-ribose) 99.4 1.1E-13 3.7E-18 107.2 3.5 93 52-144 171-276 (277)
24 2vg0_A Short-chain Z-isoprenyl 70.2 7 0.00024 28.9 4.9 48 72-120 33-80 (227)
25 3ugs_B Undecaprenyl pyrophosph 59.4 11 0.00037 27.9 4.1 47 72-119 36-82 (225)
26 3dhn_A NAD-dependent epimerase 54.1 24 0.00081 24.6 5.1 43 50-93 68-110 (227)
27 4h8e_A Undecaprenyl pyrophosph 52.2 14 0.00048 27.8 3.7 47 72-119 54-100 (256)
28 3ngf_A AP endonuclease, family 43.3 88 0.003 22.4 7.0 51 68-120 88-138 (269)
29 3sgv_B Undecaprenyl pyrophosph 43.2 14 0.00049 27.7 2.5 47 72-119 47-93 (253)
30 2vg3_A Undecaprenyl pyrophosph 41.4 26 0.0009 26.8 3.8 40 72-111 85-124 (284)
31 2zvr_A Uncharacterized protein 41.2 63 0.0022 23.5 5.9 63 68-131 108-170 (290)
32 3l7q_A Putative translation in 40.2 34 0.0012 22.3 3.9 44 105-148 47-97 (125)
33 3h2s_A Putative NADH-flavin re 39.7 32 0.0011 23.8 3.9 42 49-93 62-103 (224)
34 3qc0_A Sugar isomerase; TIM ba 38.7 75 0.0026 22.6 5.9 53 68-120 78-130 (275)
35 2d2r_A Undecaprenyl pyrophosph 37.5 21 0.00072 26.6 2.7 40 72-111 45-84 (245)
36 1qu9_A YJGF protein; structura 36.2 31 0.0011 22.5 3.1 23 125-147 74-96 (128)
37 1qd9_A Purine regulatory prote 35.0 45 0.0015 21.6 3.8 24 125-148 73-96 (124)
38 1k77_A EC1530, hypothetical pr 34.4 1.2E+02 0.0041 21.3 7.0 52 68-120 80-131 (260)
39 3lyb_A Putative endoribonuclea 33.6 25 0.00085 24.4 2.4 25 124-148 96-120 (165)
40 3vcz_A Endoribonuclease L-PSP; 33.0 36 0.0012 23.2 3.1 44 105-148 71-121 (153)
41 3pao_A Adenosine deaminase; st 32.4 91 0.0031 23.9 5.7 53 67-120 72-127 (326)
42 1smk_A Malate dehydrogenase, g 32.0 1.5E+02 0.0052 22.4 6.9 64 49-118 76-142 (326)
43 3k0t_A Endoribonuclease L-PSP, 31.6 46 0.0016 22.4 3.4 45 104-148 64-115 (143)
44 1i60_A IOLI protein; beta barr 31.4 99 0.0034 21.9 5.6 51 69-120 80-130 (278)
45 3gpi_A NAD-dependent epimerase 31.4 15 0.00052 26.8 1.0 44 50-93 64-107 (286)
46 3r0p_A L-PSP putative endoribo 31.0 53 0.0018 21.3 3.6 24 124-147 76-99 (127)
47 2cvl_A TTHA0137, protein trans 31.0 58 0.002 21.0 3.8 24 125-148 73-96 (124)
48 3qas_B Undecaprenyl pyrophosph 30.4 28 0.00095 26.1 2.3 39 72-110 47-85 (253)
49 1qah_A Perchloric acid soluble 29.2 63 0.0021 21.3 3.8 25 124-148 77-101 (136)
50 3ew7_A LMO0794 protein; Q8Y8U8 28.8 49 0.0017 22.6 3.3 41 49-93 61-101 (221)
51 2cwj_A Putative endonuclease; 28.4 50 0.0017 21.3 3.1 24 125-148 69-92 (123)
52 3gtz_A Putative translation in 28.1 52 0.0018 21.4 3.1 24 124-147 64-87 (124)
53 3k12_A Uncharacterized protein 28.0 48 0.0017 21.5 3.0 25 124-148 62-86 (122)
54 2b33_A Protein synthesis inhib 28.0 57 0.0019 21.8 3.4 24 125-148 87-110 (140)
55 1jd1_A Hypothetical 13.9 kDa p 27.9 54 0.0019 21.4 3.2 25 124-148 76-100 (129)
56 3obe_A Sugar phosphate isomera 27.7 1.4E+02 0.0046 22.1 5.9 48 68-119 109-156 (305)
57 3kjj_A NMB1025 protein; YJGF p 27.5 55 0.0019 21.5 3.2 25 124-148 70-94 (128)
58 1x25_A Hypothetical UPF0076 pr 27.5 56 0.0019 21.3 3.2 24 125-148 77-100 (128)
59 1xrg_A Putative translation in 27.3 66 0.0022 22.0 3.7 45 104-148 78-129 (156)
60 1pf5_A Hypothetical protein YJ 27.1 68 0.0023 20.9 3.6 44 105-148 50-101 (131)
61 3biy_A Histone acetyltransfera 26.7 42 0.0014 26.8 2.8 36 50-87 158-193 (380)
62 3kwr_A Putative RNA-binding pr 26.0 63 0.0021 20.4 3.1 36 86-121 20-56 (97)
63 3l23_A Sugar phosphate isomera 26.0 1.3E+02 0.0045 22.1 5.5 48 69-120 104-151 (303)
64 3m1x_A Putative endoribonuclea 25.9 52 0.0018 22.2 2.9 45 103-147 69-120 (148)
65 3v4d_A Aminoacrylate peracid r 25.3 61 0.0021 21.3 3.1 24 124-147 81-104 (134)
66 3m2p_A UDP-N-acetylglucosamine 25.0 78 0.0027 23.1 4.0 45 49-93 62-107 (311)
67 2ewc_A Conserved hypothetical 25.0 62 0.0021 21.1 3.1 24 125-148 66-89 (126)
68 2dyy_A UPF0076 protein PH0854; 24.4 46 0.0016 21.6 2.3 21 127-147 77-97 (126)
69 1f75_A Undecaprenyl pyrophosph 24.4 23 0.00078 26.5 0.9 37 72-108 50-86 (249)
70 3i7t_A RV2704, putative unchar 23.8 63 0.0022 21.9 3.0 23 125-147 69-91 (149)
71 1qtw_A Endonuclease IV; DNA re 23.2 1.3E+02 0.0045 21.4 4.9 50 69-119 85-134 (285)
72 2jl1_A Triphenylmethane reduct 23.1 2E+02 0.007 20.3 6.0 40 50-94 67-106 (287)
73 3quw_A Protein MMF1; chorismat 22.9 71 0.0024 21.8 3.1 43 105-147 74-123 (153)
74 3sxp_A ADP-L-glycero-D-mannohe 22.8 92 0.0031 23.4 4.1 43 49-92 90-135 (362)
75 2c29_D Dihydroflavonol 4-reduc 22.5 1.1E+02 0.0038 22.5 4.5 45 50-94 78-127 (337)
76 2dsy_A Hypothetical protein TT 20.7 97 0.0033 18.8 3.2 37 84-120 25-62 (87)
77 3cqj_A L-ribulose-5-phosphate 20.3 2E+02 0.0068 20.7 5.4 51 69-120 104-154 (295)
No 1
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=100.00 E-value=6.5e-43 Score=258.14 Aligned_cols=146 Identities=45% Similarity=0.690 Sum_probs=134.2
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCC-ChhhhHHHHhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTI-NPEASLRSAYKNSL 79 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L 79 (150)
|.+||||++||++++|+++++||+++++ +.+++++|++++|++++|+||||||+|+|.|+++. .+.+.|++||++||
T Consensus 28 l~~ggGv~~aI~~aaG~~l~~e~~~~~~--~~g~~~~G~a~iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~L~~~y~~~L 105 (184)
T 1spv_A 28 LMGGGGVDGAIHRAAGPALLDACLKVRQ--QQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSL 105 (184)
T ss_dssp CSCCSHHHHHHHHHHCHHHHHHHHHHHH--HHCSCCTTCEEEECCTTSSSSEEEEECCCCCSSSSSSHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhCHHHHHHHHHHHH--hcCCCCCCCEEEeeCCCCCCCEEEEEcCCcccCCCcchHHHHHHHHHHHH
Confidence 6789999999999999999999999864 23589999999999999999999999999998754 46789999999999
Q ss_pred hhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh---chhhhhhhheechhhHHHHHHHHhhccc
Q 031946 80 SLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN---DFKEVHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 80 ~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~---~l~~V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
+.|++++++|||||+||||++|+|++++|++|++++++|++ ++++|+||+++++++++|++.|+.+||.
T Consensus 106 ~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~~V~~v~~~~~~~~~~~~~l~~~~~~ 177 (184)
T 1spv_A 106 RLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE 177 (184)
T ss_dssp HHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCCSSSEEEEEESSHHHHHHHHHHHHCC---
T ss_pred HHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999986 5789999999999999999999999986
No 2
>3q6z_A Poly [ADP-ribose] polymerase 14; structural genomics consortium, SGC, ADP-ribose binding, TRA; HET: APR; 2.23A {Homo sapiens}
Probab=100.00 E-value=6.9e-43 Score=263.03 Aligned_cols=145 Identities=32% Similarity=0.435 Sum_probs=134.1
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCC--hhhhHHHHhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTIN--PEASLRSAYKNS 78 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~--~~~~L~~~~~~~ 78 (150)
|.++|||++||+++||++|++||+++++. .|++++|++++|++|+|+||||||+|+|.|+++.. +.+.|++||++|
T Consensus 62 l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~~~~L~~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~ 139 (214)
T 3q6z_A 62 LKHYGGLAAALSKAAGPELQADCDQIVKR--EGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLS 139 (214)
T ss_dssp CCCCSHHHHHHHHHHCTHHHHHHHHHHHH--HCCCCTTCEEEEECTTSSSSEEEEEECCCCCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHhhhHHHHHHHHHHHHH--cCCCCCCeEEEEcCCCCCCCEEEEecCCcccCCCcchHHHHHHHHHHHH
Confidence 67899999999999999999999998642 35899999999999999999999999999987652 467999999999
Q ss_pred hhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh------chhhhhhhheechhhHHHHHHHHhhcc
Q 031946 79 LSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN------DFKEVHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 79 L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~------~l~~V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
|+.|++++++|||||+||||++|||++++|++|++++++|++ ++++|+||++|++++++|++.++++|.
T Consensus 140 L~~A~~~~i~SIAfP~IstG~~g~P~~~aA~i~~~av~~fl~~~~~~~~l~~V~fv~~d~~~~~~f~~~l~~~f~ 214 (214)
T 3q6z_A 140 LCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKDGHCLKEIYLVDVSEKTVEAFAEAVKTVFK 214 (214)
T ss_dssp HHHHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHHHHTSSCC--CCCCEEEEEESSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCcEEEECcccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999984 468999999999999999999999984
No 3
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=261.62 Aligned_cols=144 Identities=25% Similarity=0.379 Sum_probs=131.7
Q ss_pred CCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCC-hhhhHHHHhhhhhh
Q 031946 2 LGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTIN-PEASLRSAYKNSLS 80 (150)
Q Consensus 2 ~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~-~~~~L~~~~~~~L~ 80 (150)
.++|||++||+++||++|++||+++. +++++++|++++|++|+|+||||||+|+|.|+++.. +.+.|++||++||+
T Consensus 66 ~~gGGV~~AI~~aaG~~L~~ec~~~~---~~~~~~~G~a~iT~g~~Lp~k~VIHtVgP~~~~~~~~~~~~L~~~y~~~L~ 142 (221)
T 3q71_A 66 LSRGPLSKSLLEKAGPELQEELDTVG---QGVAVSMGTVLKTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECME 142 (221)
T ss_dssp TTSSHHHHHHHHHHCTHHHHHHHHHH---HTSCCCTTCEEEEECTTSSSSEEEEECCCCCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHHHHh---ccCCCCCCeEEEEcCCCCCCCEEEEeCCCCCcCCCchHHHHHHHHHHHHHH
Confidence 47899999999999999999999875 245899999999999999999999999999987652 46899999999999
Q ss_pred hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh-----chhhhhhhheech--hhHHHHHHHHhhccc
Q 031946 81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN-----DFKEVHFVLFTDD--LYNLWLEKARELLSF 148 (150)
Q Consensus 81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~-----~l~~V~~v~~~~~--~~~~f~~~~~~~f~~ 148 (150)
+|++++++|||||+||||++|||++++|++|++++++|++ ++++|+||+++++ ++++|+++|+++||.
T Consensus 143 ~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~~~~v~~fl~~~~~~~l~~V~fv~f~~d~~~~~~f~~~l~~r~~~ 217 (221)
T 3q71_A 143 ITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQLKTLQEVHFLLHPSDHENIQAFSDEFARRANG 217 (221)
T ss_dssp HHHHTTCCEEEEECTTSSTTCCCHHHHHHHHHHHHHHHHHHCCCSSCCEEEEEECTTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHhCCceEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEEEeCCCHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999985 4789999999764 789999999999874
No 4
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.6e-42 Score=260.11 Aligned_cols=142 Identities=39% Similarity=0.707 Sum_probs=133.3
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCC--ChhhhHHHHhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTI--NPEASLRSAYKNS 78 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~--~~~~~L~~~~~~~ 78 (150)
|.|||||++||++++|++|++||+++. ++++|++++|++|+|+||||||+|||.|.+.. .+.+.|++||++|
T Consensus 87 l~~ggGV~~AI~~aaG~~l~~ec~~~g------~~~~G~a~iT~~~~L~~k~VIH~vgP~~~~~~~~~~~~~L~~~y~~~ 160 (235)
T 2x47_A 87 LLGGGGVDGCIHRAAGPLLTDECRTLQ------SCKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSS 160 (235)
T ss_dssp CSCCSHHHHHHHHHHCHHHHHHHHTSC------CCCBTCEEEEECTTSSSSEEEEEBCCCCTTCCCHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHhCHHHHHHHHHhC------CCCCCceEEecCCCCCCCEEEEecCccccCCCCcchHHHHHHHHHHH
Confidence 678999999999999999999998763 79999999999999999999999999997632 3578999999999
Q ss_pred hhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh----chhhhhhhheechhhHHHHHHHHhhccc
Q 031946 79 LSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN----DFKEVHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 79 L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~----~l~~V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
|++|++++++|||||+||||++|||++++|++|++++++|++ ++++|+||+++++++++|++.|+.|||+
T Consensus 161 L~~A~e~~i~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~l~~V~fv~f~~~~~~~y~~~l~~~fp~ 234 (235)
T 2x47_A 161 LDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDRLIICVFLEKDEDIYRSRLPHYFPV 234 (235)
T ss_dssp HHHHHHTTCCEEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEEECSHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhCCceEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEECCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999985 3778999999999999999999999997
No 5
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=100.00 E-value=7.1e-42 Score=254.27 Aligned_cols=141 Identities=25% Similarity=0.424 Sum_probs=131.4
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (150)
|.|||||++||++++|+++++||++++++ .|++++|++++|++++|+||||||+|+|.|... .+.+.|++||++||+
T Consensus 47 l~~ggGv~~aI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~~~~L~~k~VIH~vgP~~~~~-~~~~~L~~~y~~~L~ 123 (193)
T 2xd7_A 47 IDLKEDIGKALEKAGGKEFLETVKELRKS--QGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLS 123 (193)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHH--TCSCCTTCEEEEECTTSSSSEEEEEECCCTTST-THHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHhhHHHHHHHHHHHHH--cCCCCCCCeEEeeCCCCCCCEEEEECCCcCCCc-chHHHHHHHHHHHHH
Confidence 67899999999999999999999988642 358999999999999999999999999999754 567899999999999
Q ss_pred hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh-----chhhhhhhheechhhHHHHHHHHh
Q 031946 81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN-----DFKEVHFVLFTDDLYNLWLEKARE 144 (150)
Q Consensus 81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~-----~l~~V~~v~~~~~~~~~f~~~~~~ 144 (150)
+|++++++|||||+||||++|||++++|++|++++++|++ ++++|+||+++++++++|++.|++
T Consensus 124 ~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~l~~V~fv~~~~~~~~~~~~~l~~ 192 (193)
T 2xd7_A 124 AAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIGIYVQEMAK 192 (193)
T ss_dssp HHHHTTCSEEEECCCCCSTTCCCHHHHHHHHHHHHHHHHHHCSSCCCCEEEEEECSHHHHHHHHHHHHC
T ss_pred HHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999985 378999999999999999999875
No 6
>1yd9_A Core histone macro-H2A.1; alpha-beta structure, A1PP domain, macro-domain, structural protein; 1.60A {Rattus norvegicus} SCOP: c.50.1.2 PDB: 1zr3_A* 2fxk_A 3iid_A* 3iif_A* 1zr5_A
Probab=100.00 E-value=1.5e-41 Score=252.51 Aligned_cols=144 Identities=27% Similarity=0.478 Sum_probs=132.9
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (150)
|.|||||++||++++|+++++||++++++ .|++++|++++|++++|+||||||+|+|.|.. ..+.+.|++||++||+
T Consensus 44 l~~ggGv~~aI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~~~~L~~k~VIH~vgP~~~~-~~~~~~L~~~y~~~L~ 120 (193)
T 1yd9_A 44 FYIGGEVGSTLEKKGGKEFVEAVLELRKK--NGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGS-DKCEELLEKTVKNCLA 120 (193)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHH--HCSCCTTCEEEEECTTSSSSEEEEECCCCTTS-TTHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhhHHHHHHHHHHHHH--cCCCCCCCEEEecCCCCCCCEEEEeCCCCcCC-cchHHHHHHHHHHHHH
Confidence 67899999999999999999999988642 35899999999999999999999999999975 3567899999999999
Q ss_pred hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh-----chhhhhhhheechhhHHHHHHHHhhcc
Q 031946 81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN-----DFKEVHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~-----~l~~V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
+|++++++|||||+||||++|||++++|++|++++++|++ ++++|+||+++++++++|++.|.++.+
T Consensus 121 ~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~~~~l~~V~fv~~~~~~~~~~~~~l~~~~~ 192 (193)
T 1yd9_A 121 LADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDA 192 (193)
T ss_dssp HHHHTTCSEEEECCCSBSTTCBCHHHHHHHHHHHHHHHHTTCTTCCCCEEEEECCSHHHHHHHHHHHTTTTC
T ss_pred HHHHhCCceEeecccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcCEEEEEECCHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999985 478999999999999999999987644
No 7
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=100.00 E-value=2.3e-40 Score=244.03 Aligned_cols=130 Identities=22% Similarity=0.329 Sum_probs=123.6
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (150)
|.++|||++||+++||++|++||+++. ++++|++++|++|+|+||||||+|+|.| |++||++||+
T Consensus 47 l~~ggGV~~aI~~aaG~~l~~ec~~~~------~~~~G~a~iT~~~~L~~k~VIH~vgP~~---------L~~~y~~~L~ 111 (183)
T 4abl_A 47 FNLKAGVSKAILECAGQNVERECSQQA------QQRKNDYIITGGGFLRCKNIIHVIGGND---------VKSSVSSVLQ 111 (183)
T ss_dssp SCCCSTHHHHHHHHHCHHHHHHHHHHH------HHSCCSEEEEECTTSBSSEEEEEETTSC---------HHHHHHHHHH
T ss_pred CCCCccHHHHHHHHhhHHHHHHHHHhc------CCCCCceEEecCCCCCCCEEEEeCcHHH---------HHHHHHHHHH
Confidence 578999999999999999999999874 7999999999999999999999999975 9999999999
Q ss_pred hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh-----chhhhhhhheechhhHHHHHHHHhh
Q 031946 81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN-----DFKEVHFVLFTDDLYNLWLEKAREL 145 (150)
Q Consensus 81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~-----~l~~V~~v~~~~~~~~~f~~~~~~~ 145 (150)
.|++++++|||||+||||++|||++++|++|++++++|++ ++++|+||+++++++++|+++|++.
T Consensus 112 ~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~~l~~V~fv~f~~~~~~~f~~~l~kr 181 (183)
T 4abl_A 112 ECEKKNYSSICLPAIGTGNAKQHPDKVAEAIIDAIEDFVQKGSAQSVKKVKVVIFLPQVLDVFYANMKKR 181 (183)
T ss_dssp HHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHTTCCSSCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCeEeeccccCCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999985 4679999999999999999999874
No 8
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=100.00 E-value=5e-39 Score=232.36 Aligned_cols=133 Identities=27% Similarity=0.353 Sum_probs=125.2
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (150)
|.+||||++||++++|++++++|++.. ++++|++++|++++|+||||||+++|.|+ ..+.+.|++||+++|+
T Consensus 27 l~~ggGv~~aI~~~~G~~l~~~c~~~g------~~~~G~a~it~~~~L~~~~Vih~vgp~~~--~~~~~~L~~~~~~~L~ 98 (159)
T 2dx6_A 27 LKLGAGVAGAILRKGGPSIQEECDRIG------KIRVGEAAVTGAGNLPVRYVIHAAVLGDE--PASLETVRKATKSALE 98 (159)
T ss_dssp CCCCSTTHHHHHHHHCTHHHHHHHHHC------CCCTTCEEEEECTTSSSSEEEEEEEESSS--CCCHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhCHHHHHHHHhcC------CCCCCcEEEecCCCCCCCEEEEEeCCCCC--CchHHHHHHHHHHHHH
Confidence 578999999999999999999999742 79999999999999999999999999997 2457899999999999
Q ss_pred hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhchhhhhhhheechhhHHHHHHH
Q 031946 81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKA 142 (150)
Q Consensus 81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~ 142 (150)
.|++++++|||||+||||++|+|+++++++|++++++| +++++|+||+++++++++|++.|
T Consensus 99 ~a~~~~~~sIa~P~igtG~~g~p~~~~a~i~~~~~~~~-~~~~~V~~v~~~~~~~~~~~~~l 159 (159)
T 2dx6_A 99 KAVELGLKTVAFPLLGTGVGGLPVEAVARVMLEEIKKA-PDTLEVTLYGYREEDAEAIRRAL 159 (159)
T ss_dssp HHHHTTCSEEEECCTTSSTTCCCHHHHHHHHHHHHTTS-CTTCEEEEEESSHHHHHHHHHHC
T ss_pred HHHHcCCcEEEECCccCCCCCCCHHHHHHHHHHHHHhc-CCCCEEEEEECCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999 77889999999999999999864
No 9
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=100.00 E-value=2e-38 Score=236.14 Aligned_cols=132 Identities=23% Similarity=0.330 Sum_probs=124.4
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (150)
|.+||||++||++++|+++++||+++. ++++|++++|++++|+||||||+|+|. .|++||++||+
T Consensus 58 l~~ggGV~~AI~~aaG~~l~~ec~~~~------~~~~G~a~iT~g~~L~~k~VIH~vgp~---------~L~~~y~~~L~ 122 (199)
T 3kh6_A 58 FNRKSGVSRAILEGAGQAVESECAVLA------AQPHRDFIITPGGCLKCKIIIHVPGGK---------DVRKTVTSVLE 122 (199)
T ss_dssp SCCCSTHHHHHHHHHCHHHHHHHHHHH------TSCCCSSEEEECTTSSSSEEEEEETTS---------CHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhhHHHHHHHHHhC------CCCCCeEEEecCCCCCCCEEEEeCCCH---------HHHHHHHHHHH
Confidence 578999999999999999999999864 689999999999999999999999984 59999999999
Q ss_pred hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh-----chhhhhhhheechhhHHHHHHHHhhcc
Q 031946 81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN-----DFKEVHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~-----~l~~V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
.|++++++|||||+||||++|||++++|++|++++++|++ ++++|+||+++++++++|+++|++..+
T Consensus 123 ~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~~~~v~~fl~~~~~~~l~~V~fv~f~~~~~~~f~~~l~~~~~ 194 (199)
T 3kh6_A 123 ECEQRKYTSVSLPAIGTGNAGKNPITVADNIIDAIVDFSSQHSTPSLKTVKVVIFQPELLNIFYDSMKKRDL 194 (199)
T ss_dssp HHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCSSCSCCEEEEEESSTHHHHHHHHHHHTTCC
T ss_pred HHHHcCCCEEeecccccCCCCcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999985 467999999999999999999998654
No 10
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=100.00 E-value=1.6e-38 Score=231.17 Aligned_cols=129 Identities=22% Similarity=0.229 Sum_probs=118.9
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (150)
|.+||||++||+++||++|++||++++++ .|++++|++++|+++ |+|+||||+|||.|.. ..+.+.|++||+++|+
T Consensus 39 l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~g~-l~~~~VIHtVgP~~~~-~~~~~~L~~~y~~~L~ 114 (168)
T 3eti_A 39 LRHVGGVARAIDVFTGGKLTKRSKEYLKS--SKAIAPGNAVLFENV-LEHLSVMNAVGPRNGD-SRVEGKLCNVYKAIAK 114 (168)
T ss_dssp CCCCSTTHHHHHHHTTTHHHHHHHHHHTT--SCCCCTTEEEEEEEE-ETTEEEEEEECCCTTS-TTHHHHHHHHHHHHHT
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCEEEecCC-CCccEEEEecCCCCCc-chHHHHHHHHHHHHHH
Confidence 67999999999999999999999998743 358999999999999 9999999999999965 3567899999999998
Q ss_pred hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhchhhhhhhheechhhHHHHHHHH
Q 031946 81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKAR 143 (150)
Q Consensus 81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~~ 143 (150)
. .+|||||+||||++|||++++|++|++++++ ++|+||+++++++++|++.|.
T Consensus 115 ~-----~~SIAfP~IstG~~g~P~~~aa~i~~~~v~~-----~~V~~v~f~~~~~~~~~~~l~ 167 (168)
T 3eti_A 115 C-----DGKILTPLISVGIFKVKLEVSLQCLLKTVTD-----RDLNVFVYTDQERVTIENFFN 167 (168)
T ss_dssp S-----CSCEEECCTTBSTTCBCHHHHHHHHHHHCCS-----SCEEEEECCHHHHHHHHHHHH
T ss_pred h-----cCceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEEEEEcCHHHHHHHHHHhc
Confidence 5 3799999999999999999999999999987 789999999999999999875
No 11
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=100.00 E-value=2.9e-38 Score=237.61 Aligned_cols=143 Identities=29% Similarity=0.386 Sum_probs=131.3
Q ss_pred CCCCCCchhhhhhhhC----hhHHHHhhcCccccCccc--cCCCceeccCCCCCCc---ccceeeccc----ccccCCCh
Q 031946 1 MLGGGGCDGAIRRAAG----PELLEACYRVPEVGFGIR--CPTGEARITPGFKLPA---SHVIHTVGP----IYGVTINP 67 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G----~~l~~e~~~~~~~~~~~~--~~~G~~~~t~~~~L~~---k~IiH~v~P----~~~~~~~~ 67 (150)
|.+||||++||++++| ++++++|++++++ .++ +++|++++|++++|+| |||||+|+| .|.+ .+
T Consensus 46 l~~ggGV~~aI~~aaG~~~~~~l~~ec~~~~~~--~g~~~~~~G~a~iT~~~~L~~~g~k~VIH~vgP~~~~~~~~--~~ 121 (211)
T 1vhu_A 46 LEHGGGVAYAIAKACAGDAGLYTEISKKAMREQ--FGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSE--EL 121 (211)
T ss_dssp CCCCSHHHHHHHHHHHSSHHHHHHHHHHHHHHH--HSSSCCCTTCCEEEECGGGGGGTCCEEEEEECCCCTTCCCH--HH
T ss_pred ccCccHHHHHHHHHhCCCchHHHHHHHHHHHHH--cCCCcccCCcEEEEECCCCCccCcCEEEEecCCccccccCc--ch
Confidence 6789999999999999 9999999987642 235 9999999999999999 999999999 9954 56
Q ss_pred hhhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh-chhhhhhhheechhhHHHHHHHHhhc
Q 031946 68 EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN-DFKEVHFVLFTDDLYNLWLEKARELL 146 (150)
Q Consensus 68 ~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~-~l~~V~~v~~~~~~~~~f~~~~~~~f 146 (150)
.+.|++||++||+.|++++++|||||+||||++|+|++++|++|++++++|++ ++++|+||+++++.+++|++.|+.++
T Consensus 122 ~~~L~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~~~~v~~~l~~~l~~V~~v~~~~~~~~~~~~~l~~~~ 201 (211)
T 1vhu_A 122 KEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALKVFERSL 201 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHHHHHHHHCCCSSCCEEEEEESSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999984 26799999999999999999999887
Q ss_pred c
Q 031946 147 S 147 (150)
Q Consensus 147 ~ 147 (150)
.
T Consensus 202 ~ 202 (211)
T 1vhu_A 202 E 202 (211)
T ss_dssp -
T ss_pred c
Confidence 4
No 12
>3gpg_A NSP3, non-structural protein 3; macro domain, X domain, alphavirus, VIZI enzymes involved in replication, ATP-binding, cell membrane endosome; 1.65A {Chikungunya virus} PDB: 3gpo_A* 3gpq_A
Probab=100.00 E-value=6.4e-37 Score=222.52 Aligned_cols=129 Identities=18% Similarity=0.206 Sum_probs=116.9
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCC--hhhhHHHHhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTIN--PEASLRSAYKNS 78 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~--~~~~L~~~~~~~ 78 (150)
|++||||++||++++|++++ .+++++|++++|+++ ||||||+|||.|+++.. +.+.|++||++|
T Consensus 35 l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~~---~k~VIHtVGP~~~~~~~~~~~~~L~~~y~~~ 100 (168)
T 3gpg_A 35 GLPGDGVCKAVYKKWPESFK-----------NSATPVGTAKTVMCG---TYPVIHAVGPNFSNYSESEGDRELAAAYREV 100 (168)
T ss_dssp CCCCSHHHHHHHHHCGGGGT-----------TCCCCTTCEEEEEET---TEEEEEECCCCTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHhhHHhh-----------cCCCCCCCEEEecCC---CCEEEEeCCCCcCCCCcchHHHHHHHHHHHH
Confidence 67999999999999999862 248999999999985 99999999999987653 357999999999
Q ss_pred hhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh-chhhhhhhheechhhHHHHHHHHh
Q 031946 79 LSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN-DFKEVHFVLFTDDLYNLWLEKARE 144 (150)
Q Consensus 79 L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~-~l~~V~~v~~~~~~~~~f~~~~~~ 144 (150)
|++|++++++|||||+||||++|||++++|+ +++++.+|++ ++.+|+||+++++++++|++.|++
T Consensus 101 L~~A~~~~~~SIAfP~IstGi~g~P~~~aa~-ai~~v~~~~~~~~~~V~fv~f~~~~~~~y~~~l~~ 166 (168)
T 3gpg_A 101 AKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQ-SLNHLFTAMDSTDADVVIYCRDKEWEKKISEAIQM 166 (168)
T ss_dssp HHHHHHHTCSEEEEECTTSSTTSTTSCCHHH-HC-CHHHHHTTCCSEEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCcEEEECccccCCCCCCHHHHHH-HHHHHHHhccCCCCEEEEEECCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 8889988886 478999999999999999999986
No 13
>2acf_A Replicase polyprotein 1AB; ADRP domain, SARS NSP-3, APPR-1-P phosphatase, structural GE joint center for structural genomics, JCSG; 1.40A {Sars coronavirus TOR2} SCOP: c.50.1.2 PDB: 2fav_A*
Probab=100.00 E-value=1.1e-36 Score=224.03 Aligned_cols=130 Identities=20% Similarity=0.336 Sum_probs=114.9
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (150)
|.+||||++||++++|++|++||++++++ .|++++|++++|++|+|+ +||||+|||.|..+ ++.+.|++||+++
T Consensus 49 l~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~~G~a~iT~~~~L~-~~VIH~vgP~~~~~-~~~~~L~~~y~~~-- 122 (182)
T 2acf_A 49 LKHGGGVAGALNKATNGAMQKESDDYIKL--NGPLTVGGSCLLSGHNLA-KKCLHVVGPNLNAG-EDIQLLKAAYENF-- 122 (182)
T ss_dssp CCCCSHHHHHHHHHTTTHHHHHHHHHHHH--HCCCCTTCEEEEECTTTC-SEEEEECCCCGGGT-CCTTHHHHHHHGG--
T ss_pred CCCCchHHHHHHHHhCHHHHHHHHHHHHH--cCCCCCCcEEEeeCCCCC-ceEEEECCCCCCCC-chHHHHHHHHHHh--
Confidence 67999999999999999999999988642 358999999999999995 78999999999865 3567999999996
Q ss_pred hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhchhhhhhhheechhhHHHHHHHHhhcccC
Q 031946 81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKARELLSFS 149 (150)
Q Consensus 81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~~~~f~~~ 149 (150)
++++|||||+||||++|||++++|++|++++++ +|+||++|++ .|++.++.|||++
T Consensus 123 ----~~~~SIAfP~IstGi~G~p~~~aa~i~~~~v~~------~V~~v~~d~~---~y~~~l~~~~p~~ 178 (182)
T 2acf_A 123 ----NSQDILLAPLLSAGIFGAKPLQSLQVCVQTVRT------QVYIAVNDKA---LYEQVVMDYLDNL 178 (182)
T ss_dssp ----GGSSEEEECCTTCGGGCCCHHHHHHHHHHHCCS------EEEEEESCHH---HHHHHHHHHC---
T ss_pred ----cCCCEEEECCcccCCCCCCHHHHHHHHHHHHhC------cEEEEECCHH---HHHHHHHHhCCCC
Confidence 689999999999999999999999999999975 8999999876 7788888999986
No 14
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=100.00 E-value=1.1e-35 Score=216.10 Aligned_cols=131 Identities=21% Similarity=0.274 Sum_probs=116.7
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCC--hhhhHHHHhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTIN--PEASLRSAYKNS 78 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~--~~~~L~~~~~~~ 78 (150)
|.+||||++||++++|++++ .+++++|++++|+++ ||||||+|||.|.++.. +.+.|++||+++
T Consensus 29 l~~ggGV~~aI~~aaG~~l~-----------~~~~~~G~a~iT~~~---~k~VIH~VgP~~~~~~~~~~~~~L~~~y~~~ 94 (168)
T 3gqe_A 29 GQPGGGVCGALYKKFPESFD-----------LQPIEVGKARLVKGA---AKHIIHAVGPNFNKVSEVEGDKQLAEAYESI 94 (168)
T ss_dssp SCCTTGGGSHHHHHCGGGCC-----------CCCCCTTCEEEECCT---TCCEEEEECCCTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHhhHHhc-----------CCCcCCCcEEEEcCC---CCEEEEcCCCccCCCCchhHHHHHHHHHHHH
Confidence 67999999999999999763 248999999999984 99999999999987652 357899999999
Q ss_pred hhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhchhhhhhhheechhhHHHHHHHHhh
Q 031946 79 LSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKAREL 145 (150)
Q Consensus 79 L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~~~~ 145 (150)
|++|++++++|||||+||||++|||++++|+.|.+.+..+-+++.+|+||++|+++++.|++.+.+.
T Consensus 95 L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i~~~l~~~~~~~~~V~iv~fd~~~~~~~~~~~~~~ 161 (168)
T 3gqe_A 95 AKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEAVARR 161 (168)
T ss_dssp HHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHHHHHHHHHTTSCCEEEEEESCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHCCCCCCeEEEEEcCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999877777666556788999999999999999998753
No 15
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=100.00 E-value=1.1e-35 Score=219.93 Aligned_cols=126 Identities=19% Similarity=0.235 Sum_probs=115.4
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (150)
|++||||++||+++||++|++||+++++. .|++++|++++|++|+| ||||+|||.|.. .+.+.|++||+++|+
T Consensus 67 L~~ggGV~~AI~~aaG~~l~~ec~~l~~~--~g~~~~G~a~iT~~~~L---~VIHtVGP~~~~--~~~~~L~~~y~~~L~ 139 (193)
T 3ejg_A 67 LAHGGGLAKALDVYTKGKLQRLSKEHIGL--AGKVKVGTGVMVECDSL---RIFNVVGPRKGK--HERDLLIKAYNTINN 139 (193)
T ss_dssp CCCCSHHHHHHHHHTTTHHHHHHHHHHHH--HCSCCTTCEEEEEETTE---EEEEEECCCSST--THHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHhhHHHHHHHHHHHHH--cCCCCCCCEEEecCCCe---eEEEecCCCCCc--hHHHHHHHHHHHHHH
Confidence 67899999999999999999999988642 35899999999999999 999999999965 577899999999998
Q ss_pred hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhchhhhhhhheechhhHHHHHHHH
Q 031946 81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKAR 143 (150)
Q Consensus 81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~~ 143 (150)
+ .+|||||+||||++|||++++|+++++++++ .+|+||+++++++++|++.+.
T Consensus 140 ~-----~~SIAfPaIstGi~G~P~~~aa~ial~~v~~-----~~V~fv~f~~~~~~~~~~~l~ 192 (193)
T 3ejg_A 140 E-----QGTPLTPILSCGIFGIKLETSLEVLLDVCNT-----KEVKVFVYTDTEVCKVKDFVS 192 (193)
T ss_dssp S-----SSCEEECCTTCGGGCCCHHHHHHHHHHHCCS-----SCEEEEECSHHHHHHHHHHHH
T ss_pred h-----cCceeecccccCCCCCCHHHHHHHHHHHHhc-----CeEEEEEcCHHHHHHHHHHhc
Confidence 4 2799999999999999999999999999987 399999999999999998874
No 16
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A {Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A 3ewp_A*
Probab=100.00 E-value=1.1e-34 Score=212.04 Aligned_cols=127 Identities=22% Similarity=0.308 Sum_probs=111.4
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (150)
|+++|||++||+++||++|++||++++++ .|+++ +++|.++.|++++|||+|||.|... ++.+.|++||+++|+
T Consensus 47 L~~ggGV~~AI~~aaG~~l~~ec~~~~~~--~g~~~---a~iT~G~~l~t~~VIHtVGP~~~~~-~~~~~L~~~y~~~L~ 120 (176)
T 3ejf_A 47 MTHGSGVAKAIADFCGLDFVEYCEDYVKK--HGPQQ---RLVTPSFVKGIQCVNNVVGPRHGDN-NLHEKLVAAYKNVLV 120 (176)
T ss_dssp CCCCSHHHHHHHHHHCHHHHHHHHHHHHH--HCCCS---EEEECCCSTTEEEEEEECCCCTTCS-CHHHHHHHHHHTTCC
T ss_pred cCCCchHHHHHHHHhhHHHHHHHHHHHHh--cCCCC---eeecccccccCCEEEEeCCCCCCCc-cHHHHHHHHHHHHHH
Confidence 67999999999999999999999998743 24666 8999999999999999999999643 567899999999998
Q ss_pred hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhchhhhhhhhee--chhhHHHHHHH
Q 031946 81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFT--DDLYNLWLEKA 142 (150)
Q Consensus 81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~--~~~~~~f~~~~ 142 (150)
++++|||||+||||++|||++++|++|++++++ ++|+|++++ ++.+++|+..+
T Consensus 121 ----~~~~SIAfPaIstGi~g~P~~~aA~ia~~~v~~-----~~v~v~~~~~D~e~~~~~~~~~ 175 (176)
T 3ejf_A 121 ----DGVVNYVVPVLSLGIFGVDFKMSIDAMREAFEG-----CTIRVLLFSLSQEHIDYFDVTC 175 (176)
T ss_dssp ----TTCCEEEEECCCTTSTTCCHHHHHHHHHHHHTT-----CCCEEEEEESCHHHHHHHHHTC
T ss_pred ----cCCcEEEECccccCCCCCCHHHHHHHHHHHhhh-----cceEEEEEcCCHHHHHHHHHHh
Confidence 899999999999999999999999999999983 356666665 66888888654
No 17
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=100.00 E-value=3.3e-34 Score=209.76 Aligned_cols=127 Identities=21% Similarity=0.237 Sum_probs=115.4
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCChhhhHHHHhhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINPEASLRSAYKNSLS 80 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~ 80 (150)
|.|||||++||++++|+++++||+++++ +.+++++|++++|++++| ||||+|||.|.. . +.+.|++||+++|+
T Consensus 46 l~~ggGv~~AI~~aaG~~l~~ec~~~~~--~~g~~~~G~a~iT~~~~l---~VIH~vgP~~~~-~-~~~~L~~~y~~~L~ 118 (174)
T 2vri_A 46 LLHGGGVARAIDILTEGQLQSLSKDYIS--SNGPLKVGAGVMLECEKF---NVFNVVGPRTGK-H-EHSLLVEAYNSILF 118 (174)
T ss_dssp CCCCSHHHHHHHHHTTTHHHHHHHHHHH--HHCSCCTTCEEEEECSSC---EEEEEECCCSST-T-HHHHHHHHHHHHHH
T ss_pred CCCCCcHhHHHHHHhhHHHHHHHHHHHH--hcCCCCCCeEEEEECCCC---EEEEEcCCCCCc-c-hHHHHHHHHHHHHh
Confidence 6799999999999999999999999864 235899999999999997 999999999964 2 67899999999998
Q ss_pred hhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhchhhhhhhheechhhHHHHHHHHh
Q 031946 81 LAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFTDDLYNLWLEKARE 144 (150)
Q Consensus 81 ~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~~~ 144 (150)
+ + .|||||+||||++|+|++++|++|++++++ ++|+||+++++.+++|++.|++
T Consensus 119 ~---~--~SIAfP~IstG~~g~p~~~aa~i~~~~v~~-----~~V~~v~f~~~~~~~~~~~l~~ 172 (174)
T 2vri_A 119 E---N--GIPLMPLLSCGIFGVRIENSLKALFSCDIN-----KPLQVFVYSSNEEQAVLKFLDG 172 (174)
T ss_dssp S---S--SCEEEECSSCGGGCCCHHHHHHHHHTSCCC-----SCEEEEECSHHHHHHHHHHHHT
T ss_pred h---C--CcEEeCccccCCCCCCHHHHHHHHHHHHhh-----CcEEEEEcCHHHHHHHHHHHhh
Confidence 5 2 499999999999999999999999999976 6899999999999999999865
No 18
>1njr_A 32.1 kDa protein in ADH3-RCA1 intergenic region; structural genomics, dimer, two domain organization, PSI, PR structure initiative; HET: XYL; 1.90A {Saccharomyces cerevisiae} SCOP: c.50.1.2 PDB: 1txz_A* 1ty8_A*
Probab=99.98 E-value=2.8e-33 Score=218.03 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=114.1
Q ss_pred CCCCCCchhhhhhhhC-hhHHHHhhcCccccCccccCCCceeccCCC----------CCCcccceeecccccccCC----
Q 031946 1 MLGGGGCDGAIRRAAG-PELLEACYRVPEVGFGIRCPTGEARITPGF----------KLPASHVIHTVGPIYGVTI---- 65 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G-~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~----------~L~~k~IiH~v~P~~~~~~---- 65 (150)
|.|||||++||++++| +.++++|+++.+ .|.+++|++++|+++ +|+||||||+|||.|.++.
T Consensus 83 l~~gGGVd~AI~raaGg~~l~~ec~~~~~---~g~~~~G~a~iT~~~~~~~~~~~~~~L~~k~VIHtvgp~~~~~~~~d~ 159 (284)
T 1njr_A 83 GYLGGGFDKALYNYFGGKPFETWFRNQLG---GRYHTVGSATVVDLQRCLEEKTIECRDGIRYIIHVPTVVAPSAPIFNP 159 (284)
T ss_dssp CCCCSSHHHHHHHHHTSHHHHHHHHHHTT---TSCCCTTCCEEEEGGGGGCC----CCTTEEEEEECCCBSCSSSCSCCT
T ss_pred CCCCchHHHHHHHhhCcHHHHHHHHHHHh---cCCCCCCeEEEEECCcccccccchhcCCCCEEEEeCCCccCCCCCccc
Confidence 5789999999999965 788999998763 347999999999999 9999999999999998652
Q ss_pred -----ChhhhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhc------h-hhhhhhheech
Q 031946 66 -----NPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAND------F-KEVHFVLFTDD 133 (150)
Q Consensus 66 -----~~~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~------l-~~V~~v~~~~~ 133 (150)
.+.+.|++||+++|+.| +++++|||||+||||++|||++++|++|++++++|+.. + +.|+||.+ ++
T Consensus 160 ~~p~~~~~~~L~~~~~~~L~~a-e~~i~SIAfPaIsTGv~G~P~~~aA~i~~~av~~f~~~~~~s~~~~~~vi~~~~-~~ 237 (284)
T 1njr_A 160 QNPLKTGFEPVFNAMWNALMHS-PKDIDGLIIPGLCTGYAGVPPIISCKSMAFALRLYMAGDHISKELKNVLIMYYL-QY 237 (284)
T ss_dssp TCHHHHTHHHHHHHHHHHHHTS-CTTCSEEEECCTTCSTTCCCHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHT-TC
T ss_pred ccccccHHHHHHHHHHHHHHHH-HhCCCEEEECcccccCCCCCHHHHHHHHHHHHHHHHHhCCcccccceEEEEEEC-HH
Confidence 13579999999999999 99999999999999999999999999999999999852 2 45677766 44
Q ss_pred hhHHH
Q 031946 134 LYNLW 138 (150)
Q Consensus 134 ~~~~f 138 (150)
.|+.|
T Consensus 238 ~~~~~ 242 (284)
T 1njr_A 238 PFEPF 242 (284)
T ss_dssp CCGGG
T ss_pred HHHHH
Confidence 44444
No 19
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=99.96 E-value=4.2e-30 Score=212.09 Aligned_cols=129 Identities=21% Similarity=0.281 Sum_probs=114.4
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccccccCCCh--hhhHHHHhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPIYGVTINP--EASLRSAYKNS 78 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~~~~~~~~--~~~L~~~~~~~ 78 (150)
|++||||++||+++||+++.+ +.+++|++++|+++ .|||||+|||.|+++.+. .++|++||+++
T Consensus 369 L~gGgGVdGAIhraaG~~ll~-----------~~~~tG~AkIT~g~---aKyIIHtVGPvw~~g~~~E~~~lLascYrns 434 (670)
T 4gua_A 369 GRPGEGVCRAIYKRWPTSFTD-----------SATETGTARMTVCL---GKKVIHAVGPDFRKHPEAEALKLLQNAYHAV 434 (670)
T ss_dssp CCCCSSHHHHHHHHCGGGGTT-----------CCCCTTCEEEEEET---TEEEEEECCCCTTSSCHHHHHHHHHHHHHHH
T ss_pred CCCcCCHhHHHHHHhhHHHhc-----------CCCCcceEEEecCC---CceEEEcCCCCccCCCCchHHHHHHHHHHHH
Confidence 678999999999999998764 26889999999998 599999999999988643 36899999999
Q ss_pred hhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhchh-hhhhhheechhhHHHHHHHHh
Q 031946 79 LSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFK-EVHFVLFTDDLYNLWLEKARE 144 (150)
Q Consensus 79 L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~l~-~V~~v~~~~~~~~~f~~~~~~ 144 (150)
|++|.+++++|||||+||||+||||++ .+++++.++.+|++..+ +|.+|++|++.-+.+++.++.
T Consensus 435 LkLA~e~~~kSIAFPLISTGIYG~PKd-al~IAl~~I~~fL~~~D~dV~IvcfDKkwe~~Ik~ai~~ 500 (670)
T 4gua_A 435 ADLVNEHNIKSVAIPLLSTGIYAAGKD-RLEVSLNCLTTALDRTDADVTIYCLDKKWKERIDAALQL 500 (670)
T ss_dssp HHHHHHTTCSEEEECCTTSSSTTTTSC-CHHHHHHHHHHHHTTSSCEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEEccccccCCCCCHH-HHHHHHHHHHHHHhccCCEEEEEEecChHHHHHHHHHHH
Confidence 999999999999999999999999987 58999999999997543 899999999877777776654
No 20
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=99.89 E-value=2.9e-23 Score=148.24 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=91.4
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccc-cccCCChhhhHHHHhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI-YGVTINPEASLRSAYKNSL 79 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~-~~~~~~~~~~L~~~~~~~L 79 (150)
|.||+||+++|++++| ++ .+|++. .+++|++++|+++ .+||||+++|. |.. ..+.+.|++||++++
T Consensus 35 ~~~G~Gva~ai~~~~p-~~-~~~~~~-------~~~~G~a~it~~~---~~~Vih~v~~~~~~~-~~~~~~l~~~l~~~l 101 (149)
T 2eee_A 35 CRMGAGIAVLFKKKFG-GV-QELLNQ-------QKKSGEVAVLKRD---GRYIYYLITKKRASH-KPTYENLQKSLEAMK 101 (149)
T ss_dssp CCCCSTTHHHHHHHTC-CH-HHHHTT-------CCCTTCEEEEESS---SSEEEEEEEESSTTS-CCCHHHHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHCc-HH-HHHhcc-------cCCCccEEEEEcC---CCEEEEEEecCCCCC-CCCHHHHHHHHHHHH
Confidence 5789999999999994 55 567642 6899999999885 69999999998 654 446789999999999
Q ss_pred hhhhhcCceeeeecceeccccccchhHHHHHHHHHHHH
Q 031946 80 SLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKE 117 (150)
Q Consensus 80 ~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~ 117 (150)
+.|++++++|||||.||||++|+|.++++++|.+++.+
T Consensus 102 ~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii~~~~~~ 139 (149)
T 2eee_A 102 SHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA 139 (149)
T ss_dssp HHHHHHTCCEEECCCCCCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999887764
No 21
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=99.88 E-value=4e-23 Score=149.04 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=91.8
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccc-cccCCChhhhHHHHhhhhh
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI-YGVTINPEASLRSAYKNSL 79 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~-~~~~~~~~~~L~~~~~~~L 79 (150)
|.|||||+++|.+++|. + .+|++ +.+++|++++|+++ .+||||+++|. |.+ ..+.+.|++||++++
T Consensus 46 ~~~GgGVa~ai~~~~p~-~-~e~~~-------~~~~~G~a~it~~~---~~~Vih~vg~~~~~~-~~~~~~l~~~l~~~l 112 (160)
T 2jyc_A 46 CRMGAGIAVLFKKKFGG-V-QELLN-------QQKKSGEVAVLKRD---GRYIYYLITKKRASH-KPTYENLQKSLEAMK 112 (160)
T ss_dssp CCCCSSTHHHHHHHHCC-H-HHHHH-------HCCCTTCEEEEEET---TEEEEEEECSSSTTS-CCCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHChH-H-HHHhc-------cCCCCCcEEEEecC---CcEEEEEecCCCCCC-CChHHHHHHHHHHHH
Confidence 57999999999999954 4 57764 26899999999885 69999999998 654 456789999999999
Q ss_pred hhhhhcCceeeeecceeccccccchhHHHHHHHHHHHH
Q 031946 80 SLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKE 117 (150)
Q Consensus 80 ~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~ 117 (150)
+.|++++++|||||.||||++|+|.+++++++.+++.+
T Consensus 113 ~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii~~~~~~ 150 (160)
T 2jyc_A 113 SHCLKNGVTDLSMPRIGCGLDRLQWENVSAMIEEVFEA 150 (160)
T ss_dssp HHHHHHTCCEEEEESCCSSCSSSCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999888764
No 22
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=99.85 E-value=7.4e-22 Score=142.12 Aligned_cols=111 Identities=16% Similarity=0.055 Sum_probs=92.6
Q ss_pred CCCCCCchhhhhhhhChhHHHHhhcCccccCccccCCCceeccCCCCCCcccceeecccc-cccCC-C----hhhhHHHH
Q 031946 1 MLGGGGCDGAIRRAAGPELLEACYRVPEVGFGIRCPTGEARITPGFKLPASHVIHTVGPI-YGVTI-N----PEASLRSA 74 (150)
Q Consensus 1 l~~~ggv~~aI~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~t~~~~L~~k~IiH~v~P~-~~~~~-~----~~~~L~~~ 74 (150)
+.||+||+++|++++ |++++++++..++ .+++++|++++|+++. .+||||+++|. |.... . +.+.|++|
T Consensus 32 ~~~G~Gva~ai~~~~-p~~~~~~~~~~~~--~~~~~~G~~~i~~~~~--~~~Vi~~v~~~~~~~~~~~~~~~~~~~l~~~ 106 (158)
T 2fg1_A 32 GGWGKGFVLALSKKW-KMPEEAYRQWYKS--QEEFTLGAVQFVNVEN--KLYVANMIGQHGIYKDSKGLPPIRYDAVRQC 106 (158)
T ss_dssp CCCCSTHHHHHHHHC-SHHHHHHHHHHHH--TSSCSTTCEEEEEEET--TEEEEEEEEESSSSCCTTCCCSBCHHHHHHH
T ss_pred CCcCccHHHHHHHHC-ChHHHHHHHHHhh--ccCcCCccEEEEecCC--CeEEEEEEEEcccCCCCCCCccccHHHHHHH
Confidence 578999999999999 7888887664421 2479999999998842 49999999998 76432 1 57889999
Q ss_pred hhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHH
Q 031946 75 YKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKE 117 (150)
Q Consensus 75 ~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~ 117 (150)
++++++.|.+++. |||||.||||++|+|.+++++++.+.+.+
T Consensus 107 l~~~~~~a~~~~~-sIa~P~Ig~G~~G~~w~~v~~ii~~~l~~ 148 (158)
T 2fg1_A 107 LKEVALFTIAHKA-SVHMPRIGCGLAGGKWELMEQIIKEELIT 148 (158)
T ss_dssp HHHHHHHHHHHTC-EEEECCTTCSTTCCCHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHhCC-eEEecCcCCCCCCCCHHHHHHHHHHHhcc
Confidence 9999999999997 99999999999999999999987666543
No 23
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=99.40 E-value=1.1e-13 Score=107.17 Aligned_cols=93 Identities=15% Similarity=0.206 Sum_probs=80.5
Q ss_pred cceeecccccccCC------ChhhhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHH---HHhhch
Q 031946 52 HVIHTVGPIYGVTI------NPEASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVK---EFANDF 122 (150)
Q Consensus 52 ~IiH~v~P~~~~~~------~~~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~---~~~~~l 122 (150)
-||.++.|+|.... ...+.|++.++.+|..|.++|+++|++|++|||.||.|++++|+++.+.+. +|...+
T Consensus 171 ~vit~aApn~~~~~~~~~~~~~~~~l~~rir~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~~vL~~~~~f~~~f 250 (277)
T 3sig_A 171 AFLTSPAPNRRAIGDLRTVEEIGRVLRGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFAGLLLDGGPFAGRF 250 (277)
T ss_dssp EEEEECCCCHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHHHHHSTTCTTTTTC
T ss_pred EEEEecCCCCccccCccchHHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCcCCCCHHHHHHHHHHHHhhcchhcCCc
Confidence 47889999885321 135789999999999999999999999999999999999999999999998 466789
Q ss_pred hhhhhhheec----hhhHHHHHHHHh
Q 031946 123 KEVHFVLFTD----DLYNLWLEKARE 144 (150)
Q Consensus 123 ~~V~~v~~~~----~~~~~f~~~~~~ 144 (150)
++|+|+++|+ ..+++|++.|.+
T Consensus 251 ~~VvFAv~d~~~~~~n~~~F~~~F~~ 276 (277)
T 3sig_A 251 AHVVFAVWDTAPGAPRHAAFARRFGS 276 (277)
T ss_dssp SEEEEECCCCSTTCHHHHHHHHHC--
T ss_pred eEEEEEEecCCCcchHHHHHHHHHhh
Confidence 9999999997 589999998865
No 24
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=70.19 E-value=7 Score=28.89 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=39.8
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN 120 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~ 120 (150)
.+.+++++..|.+.|++.+.+=+++|+++.=|.+++ ..+++-+.+++.
T Consensus 33 ~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev-~~Lm~l~~~~l~ 80 (227)
T 2vg0_A 33 AAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDEL-AALIEIITDVVE 80 (227)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHH-HHHHHHHHHHHH
Confidence 457778888889999999999999999999999998 455566666654
No 25
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=59.43 E-value=11 Score=27.90 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
.+.++++++.|.+.|++.+.+=+++|.++.=|++++... ++-+.+++
T Consensus 36 ~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~L-m~L~~~~l 82 (225)
T 3ugs_B 36 VKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFI-FELLDRCL 82 (225)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHH-HHHHHHHH
Confidence 346677778888999999999999999999999998754 44445554
No 26
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=54.05 E-value=24 Score=24.63 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=25.8
Q ss_pred cccceeecccccccCCChhhhHHHHhhhhhhhhhhcCceeeeec
Q 031946 50 ASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFP 93 (150)
Q Consensus 50 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sia~P 93 (150)
++.|||++++.|.... ..+.-.....++++.+.+.+.+.+.+.
T Consensus 68 ~d~vi~~a~~~~~~~~-~~~~n~~~~~~l~~~~~~~~~~~~v~~ 110 (227)
T 3dhn_A 68 ADAVISAFNPGWNNPD-IYDETIKVYLTIIDGVKKAGVNRFLMV 110 (227)
T ss_dssp CSEEEECCCC-------CCSHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCEEEEeCcCCCCChh-HHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 6899999999865432 111224456777888888888776663
No 27
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=52.21 E-value=14 Score=27.84 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=37.0
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
.+.++++++.|.+.|++.+.+=+++|.++.=|++++...| .-+.+++
T Consensus 54 ~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm-~L~~~~l 100 (256)
T 4h8e_A 54 MQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIM-NLPVNFL 100 (256)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHH-HHHHHHH
Confidence 4466777888889999999999999999999999887553 3334444
No 28
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=43.31 E-value=88 Score=22.43 Aligned_cols=51 Identities=14% Similarity=0.044 Sum_probs=35.2
Q ss_pred hhhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh
Q 031946 68 EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN 120 (150)
Q Consensus 68 ~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~ 120 (150)
.+...+.++++++.|.+.|.+.|.+.. | ...+.+.++.-+.+.+.+.+..+
T Consensus 88 r~~~~~~~~~~i~~A~~lGa~~v~~~~-g-~~~~~~~~~~~~~~~~~l~~l~~ 138 (269)
T 3ngf_A 88 EQEFRDNVDIALHYALALDCRTLHAMS-G-ITEGLDRKACEETFIENFRYAAD 138 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECCB-C-BCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcc-C-CCCCCCHHHHHHHHHHHHHHHHH
Confidence 455667789999999999999998842 1 12334556666666666666554
No 29
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=43.23 E-value=14 Score=27.74 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=26.8
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
.+.++++++.|.+.|++.+.+=+++|.++.=|++++... ++-+.+++
T Consensus 47 ~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~L-m~L~~~~l 93 (253)
T 3sgv_B 47 AKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSAL-MELFVWAL 93 (253)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECC-----------CHHH-HHHHHTTH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHH-HHHHHHHH
Confidence 456677788888999999999999999999999988654 34444444
No 30
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=41.36 E-value=26 Score=26.75 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=34.9
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
.+.++++++.|.+.|++.+.+=+++|.++.=|.+++...|
T Consensus 85 ~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm 124 (284)
T 2vg3_A 85 EAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLM 124 (284)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHH
Confidence 3678888888999999999999999999999999876553
No 31
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=41.20 E-value=63 Score=23.50 Aligned_cols=63 Identities=13% Similarity=-0.016 Sum_probs=39.7
Q ss_pred hhhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhhchhhhhhhhee
Q 031946 68 EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFANDFKEVHFVLFT 131 (150)
Q Consensus 68 ~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~ 131 (150)
.+...+.++.+++.|.+.|.+.|..|..|. ..+.+.++.-+.+.+.+++..+..++|.+++.+
T Consensus 108 r~~~~~~~~~~i~~A~~lG~~~v~~~~~g~-~~~~~~~~~~~~~~~~l~~l~~~a~~v~l~lEn 170 (290)
T 2zvr_A 108 RKKAIERVVKHTEVAGMFGALVIIGLVRGR-REGRSYEETEELFIESMKRLLELTEHAKFVIEP 170 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEESGGGCC-CTTSCHHHHHHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecCCCC-CCCcCHHHHHHHHHHHHHHHHHHhccCEEEEEe
Confidence 345567889999999999999998553222 123445666666666666655422226666544
No 32
>3l7q_A Putative translation initiation inhibitor, ALDR R like protein; translation initiation inhibitor regulator-like; 2.50A {Streptococcus mutans} SCOP: d.79.1.0
Probab=40.20 E-value=34 Score=22.25 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHhh----chh---hhhhhheechhhHHHHHHHHhhccc
Q 031946 105 EEAATIAISTVKEFAN----DFK---EVHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 105 ~~~a~~~l~~i~~~~~----~l~---~V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
++-++..++.+..-++ +++ ++.+.+.|.+.+..+.+.+.++|+.
T Consensus 47 ~~Q~~~~l~ni~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~v~~~~f~~ 97 (125)
T 3l7q_A 47 EEQTQQVLKNISAILTEAGTDFDHVVKTTCFLSDIDDFVPFNEVYATAFKS 97 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEESCGGGHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCC
Confidence 4444444444444442 233 3444555666788899999988864
No 33
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=39.70 E-value=32 Score=23.81 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=29.4
Q ss_pred CcccceeecccccccCCChhhhHHHHhhhhhhhhhhcCceeeeec
Q 031946 49 PASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFP 93 (150)
Q Consensus 49 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sia~P 93 (150)
.++.|||++++.|.... ...-....+++++.+.+.+ ..+.+.
T Consensus 62 ~~d~vi~~ag~~~~~~~--~~~n~~~~~~l~~a~~~~~-~~~v~~ 103 (224)
T 3h2s_A 62 SVDAVVDALSVPWGSGR--GYLHLDFATHLVSLLRNSD-TLAVFI 103 (224)
T ss_dssp TCSEEEECCCCCTTSSC--THHHHHHHHHHHHTCTTCC-CEEEEE
T ss_pred cCCEEEECCccCCCcch--hhHHHHHHHHHHHHHHHcC-CcEEEE
Confidence 37899999999876432 2234445678888888888 666654
No 34
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=38.69 E-value=75 Score=22.62 Aligned_cols=53 Identities=6% Similarity=-0.042 Sum_probs=34.2
Q ss_pred hhhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh
Q 031946 68 EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN 120 (150)
Q Consensus 68 ~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~ 120 (150)
.+.....++.+++.|.+.|.+.|.++.=.......+.++.-+.+.+.+.+..+
T Consensus 78 r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~ 130 (275)
T 3qc0_A 78 REKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLP 130 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 34555778899999999999999886411111124555666666666665543
No 35
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=37.53 E-value=21 Score=26.64 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=25.1
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIA 111 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~ 111 (150)
.+.+++++..|.+.|++.+.+=+++|.++.=|++++...|
T Consensus 45 ~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm 84 (245)
T 2d2r_A 45 VKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLM 84 (245)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEECC----------CHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHH
Confidence 4577888888899999999999999999999988876554
No 36
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A
Probab=36.17 E-value=31 Score=22.54 Aligned_cols=23 Identities=0% Similarity=-0.080 Sum_probs=15.0
Q ss_pred hhhhheechhhHHHHHHHHhhcc
Q 031946 125 VHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 125 V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
+.+.+.|.+.+..+.+.+.++|+
T Consensus 74 ~~vyl~d~~~~~~~n~~~~~~f~ 96 (128)
T 1qu9_A 74 TTVFVKDLNDFATVNATYEAFFT 96 (128)
T ss_dssp EEEEESCGGGHHHHHHHHHHHHH
T ss_pred EEEEEcCHHHHHHHHHHHHHHcC
Confidence 33444555677777777777774
No 37
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=35.05 E-value=45 Score=21.62 Aligned_cols=24 Identities=4% Similarity=-0.057 Sum_probs=16.0
Q ss_pred hhhhheechhhHHHHHHHHhhccc
Q 031946 125 VHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 125 V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
+.+.+.|.+.+..+.+.+.++|+.
T Consensus 73 ~~vyl~d~~~~~~~n~~~~~~f~~ 96 (124)
T 1qd9_A 73 ATVFIADMEQFAEVNEVYGQYFDT 96 (124)
T ss_dssp EEEEESCGGGHHHHHHHHHHHSSS
T ss_pred EEEEEcChHHHHHHHHHHHHHcCC
Confidence 334445556778888888888753
No 38
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=34.40 E-value=1.2e+02 Score=21.34 Aligned_cols=52 Identities=17% Similarity=0.063 Sum_probs=34.7
Q ss_pred hhhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh
Q 031946 68 EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN 120 (150)
Q Consensus 68 ~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~ 120 (150)
.+...+.++.+++.|.+.|.+.|.+.. |....+.+.++.-+.+.+.+++..+
T Consensus 80 ~~~~~~~~~~~i~~a~~lG~~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~l~~ 131 (260)
T 1k77_A 80 EHEAHADIDLALEYALALNCEQVHVMA-GVVPAGEDAERYRAVFIDNIRYAAD 131 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECCC-CBCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECc-CCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 356667889999999999999998742 1111234566666666666665543
No 39
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae}
Probab=33.61 E-value=25 Score=24.43 Aligned_cols=25 Identities=4% Similarity=-0.031 Sum_probs=16.8
Q ss_pred hhhhhheechhhHHHHHHHHhhccc
Q 031946 124 EVHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 124 ~V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
++.+.+.|.+.+..+.+.+.++|+.
T Consensus 96 kvtvyl~d~~df~~~n~v~~~~f~~ 120 (165)
T 3lyb_A 96 KLVQYFRNLDHFPYYSRVRKLFYPD 120 (165)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHCSS
T ss_pred EEEEEECCHHHhHHHHHHHHHHcCC
Confidence 3444455566788888888888863
No 40
>3vcz_A Endoribonuclease L-PSP; virulence, pathogenesis, infectious diseases, center for STR genomics of infectious diseases, csgid, translation; HET: GOL; 1.80A {Vibrio vulnificus}
Probab=32.96 E-value=36 Score=23.20 Aligned_cols=44 Identities=9% Similarity=0.047 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHhh----chh---hhhhhheechhhHHHHHHHHhhccc
Q 031946 105 EEAATIAISTVKEFAN----DFK---EVHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 105 ~~~a~~~l~~i~~~~~----~l~---~V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
++-++..++.+..-++ +++ ++.+.+.|.+.+..+.+.+.++|+.
T Consensus 71 ~~Qt~~~l~nl~a~L~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~ 121 (153)
T 3vcz_A 71 AAQARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDE 121 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCchHHHHHHHHHHHHhCC
Confidence 4444444444444443 232 3444455666788888888888753
No 41
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=32.38 E-value=91 Score=23.88 Aligned_cols=53 Identities=17% Similarity=0.121 Sum_probs=42.0
Q ss_pred hhhhHHHHhhhhhhhhhhcCceee--ee-cceeccccccchhHHHHHHHHHHHHHhh
Q 031946 67 PEASLRSAYKNSLSLAKANNIQYI--AF-PAISCGLYCYPHEEAATIAISTVKEFAN 120 (150)
Q Consensus 67 ~~~~L~~~~~~~L~~a~~~~~~si--a~-P~lgtG~~~~p~~~~a~~~l~~i~~~~~ 120 (150)
.++.++...+.+++.+.+.|+..+ -| |-..+ ..|++.+++.+.++++++++.+
T Consensus 72 t~ed~~~~a~~~~~~~~~dgV~y~Eir~~P~~~~-~~gl~~~~~v~~v~~~~~~a~~ 127 (326)
T 3pao_A 72 TEQDFYDLTWAYLQKCKAQNVVHVEPFFDPQTHT-DRGIPFEVVLAGIRAALRDGEK 127 (326)
T ss_dssp SHHHHHHHHHHHHHHHHHTTEEEECCEECHHHHH-TTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEEEChHHhc-cCCCCHHHHHHHHHHHHHHHHh
Confidence 467899999999999988898875 34 44433 4678999999999999988764
No 42
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A
Probab=31.97 E-value=1.5e+02 Score=22.43 Aligned_cols=64 Identities=13% Similarity=0.002 Sum_probs=37.8
Q ss_pred CcccceeecccccccCCChhhhH---HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHH
Q 031946 49 PASHVIHTVGPIYGVTINPEASL---RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEF 118 (150)
Q Consensus 49 ~~k~IiH~v~P~~~~~~~~~~~L---~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~ 118 (150)
.++.|||+++.....+....+.+ -..+++..+.+.+.+.+.+.+- ...|.+..+.++.+++.++
T Consensus 76 gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv------~SNPv~~~~~~~t~~~~~~ 142 (326)
T 1smk_A 76 GMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNL------ISNPVNSTVPIAAEVFKKA 142 (326)
T ss_dssp TCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEE------CCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE------ECCchHHHHHHHHHHHHHc
Confidence 48999999985443332111122 1345566666666665544442 3478888777777777665
No 43
>3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV}
Probab=31.59 E-value=46 Score=22.37 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHhh----chh---hhhhhheechhhHHHHHHHHhhccc
Q 031946 104 HEEAATIAISTVKEFAN----DFK---EVHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 104 ~~~~a~~~l~~i~~~~~----~l~---~V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
.++-++..++.+..-++ +++ ++.+.+.|.+.+..+.+.+.++|+.
T Consensus 64 ~~~Qt~~~l~ni~aiL~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~ 115 (143)
T 3k0t_A 64 IEAQITQVFENLKSVAQAAGGSFKDIVKLNIFLTDLGHFAKVNEIMGSYFSQ 115 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHEEEEEEEEcChHHHHHHHHHHHHHcCC
Confidence 34455555555555543 333 3444555666788899999888863
No 44
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=31.40 E-value=99 Score=21.92 Aligned_cols=51 Identities=12% Similarity=0.209 Sum_probs=34.7
Q ss_pred hhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh
Q 031946 69 ASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN 120 (150)
Q Consensus 69 ~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~ 120 (150)
+...+.++.+++.|.+.|.+.|.+.. +....+++.++.-+.+.+.+++..+
T Consensus 80 ~~~~~~~~~~i~~a~~lG~~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~l~~ 130 (278)
T 1i60_A 80 NEIITEFKGMMETCKTLGVKYVVAVP-LVTEQKIVKEEIKKSSVDVLTELSD 130 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEC-CBCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEec-CCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45567788999999999999998832 2222235666666666776666553
No 45
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=31.37 E-value=15 Score=26.80 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=26.2
Q ss_pred cccceeecccccccCCChhhhHHHHhhhhhhhhhhcCceeeeec
Q 031946 50 ASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFP 93 (150)
Q Consensus 50 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sia~P 93 (150)
++.|||++++.........+.=-....++++.|.+.+.+.+.+.
T Consensus 64 ~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~ 107 (286)
T 3gpi_A 64 PEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFV 107 (286)
T ss_dssp CSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 78999999885422111111113456677777777787776663
No 46
>3r0p_A L-PSP putative endoribonuclease; hydrolase; 1.90A {Uncultured organism} SCOP: d.79.1.0
Probab=31.04 E-value=53 Score=21.35 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=16.8
Q ss_pred hhhhhheechhhHHHHHHHHhhcc
Q 031946 124 EVHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 124 ~V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
++.+.+.|.+.+..+.+.+.++|+
T Consensus 76 k~~vyl~d~~~~~~~~~v~~~~f~ 99 (127)
T 3r0p_A 76 KLNVYLTDLANFPIVNEVMGQYFQ 99 (127)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHCC
T ss_pred EEEEEEcCHHHHHHHHHHHHHHcC
Confidence 344455566678888888888886
No 47
>2cvl_A TTHA0137, protein translation initiation inhibitor; structural genomics, NPPSFA; 1.65A {Thermus thermophilus} SCOP: d.79.1.1 PDB: 2csl_A 2cw4_A
Probab=30.97 E-value=58 Score=21.04 Aligned_cols=24 Identities=8% Similarity=-0.053 Sum_probs=16.1
Q ss_pred hhhhheechhhHHHHHHHHhhccc
Q 031946 125 VHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 125 V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
+.+.+.|.+.+..+.+.+.++|+.
T Consensus 73 ~~vyl~d~~~~~~~~~~~~~~f~~ 96 (124)
T 2cvl_A 73 TTCFLADMEDFPGFNEVYARYFTP 96 (124)
T ss_dssp EEEEESCGGGHHHHHHHHHHHCCS
T ss_pred EEEEEcChHHHHHHHHHHHHHcCC
Confidence 334445556788888888888854
No 48
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=30.44 E-value=28 Score=26.12 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=23.4
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATI 110 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~ 110 (150)
.+.++++++.|.+.|++.+.+=+++|.++.=|++++...
T Consensus 47 ~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~L 85 (253)
T 3qas_B 47 AKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSAL 85 (253)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCC-------------
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHH
Confidence 467788888889999999999999999999998887544
No 49
>1qah_A Perchloric acid soluble protein; alpha-beta structure; 1.80A {Rattus norvegicus} SCOP: d.79.1.1 PDB: 1oni_A 1nq3_A
Probab=29.19 E-value=63 Score=21.33 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=17.9
Q ss_pred hhhhhheechhhHHHHHHHHhhccc
Q 031946 124 EVHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 124 ~V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
++.+.+.|.+.+..+.+.+.++|+.
T Consensus 77 k~~vyl~d~~d~~~~n~~~~~~f~~ 101 (136)
T 1qah_A 77 KTTVLLADINDFGTVNEIYKTYFQG 101 (136)
T ss_dssp EEEEEESCGGGHHHHHHHHHTTCCS
T ss_pred EEEEEEccCccHHHHHHHHHHHcCC
Confidence 3444555667788888888888864
No 50
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=28.76 E-value=49 Score=22.64 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=27.6
Q ss_pred CcccceeecccccccCCChhhhHHHHhhhhhhhhhhcCceeeeec
Q 031946 49 PASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFP 93 (150)
Q Consensus 49 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sia~P 93 (150)
.++.|||++++.... ...-....+++++.+.+.+...+.+.
T Consensus 61 ~~d~vi~~ag~~~~~----~~~~~~~~~~l~~a~~~~~~~~~v~~ 101 (221)
T 3ew7_A 61 DQNVVVDAYGISPDE----AEKHVTSLDHLISVLNGTVSPRLLVV 101 (221)
T ss_dssp TCSEEEECCCSSTTT----TTSHHHHHHHHHHHHCSCCSSEEEEE
T ss_pred CCCEEEECCcCCccc----cchHHHHHHHHHHHHHhcCCceEEEE
Confidence 378999999985432 22334566777777777776666664
No 51
>2cwj_A Putative endonuclease; hydrolase, endoribonucrease, structural GE NPPSFA, national project on protein structural and function analyses; 3.60A {Aeropyrum pernix} SCOP: d.79.1.1
Probab=28.44 E-value=50 Score=21.34 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=17.1
Q ss_pred hhhhheechhhHHHHHHHHhhccc
Q 031946 125 VHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 125 V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
+.+.+.|.+.+..+.+.+.++|+.
T Consensus 69 ~~vyl~d~~df~~~n~~~~~~f~~ 92 (123)
T 2cwj_A 69 VTVYITDISRFSEFNEVYREYFNR 92 (123)
T ss_dssp EEEEESSSSHHHHHHHHHHTTCCS
T ss_pred EEEEEcCHHHHHHHHHHHHHHcCC
Confidence 344455666788888888888864
No 52
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=28.09 E-value=52 Score=21.44 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=16.3
Q ss_pred hhhhhheechhhHHHHHHHHhhcc
Q 031946 124 EVHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 124 ~V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
++.+.+.|.+.+..+.+.+.++|+
T Consensus 64 k~tvyl~d~~df~~~n~v~~~~f~ 87 (124)
T 3gtz_A 64 DATIFLSDKADFAAMNKAWDAWVV 87 (124)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHSC
T ss_pred EEEEEECCHHHHHHHHHHHHHHhC
Confidence 344444555678888888888886
No 53
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=28.03 E-value=48 Score=21.49 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=16.7
Q ss_pred hhhhhheechhhHHHHHHHHhhccc
Q 031946 124 EVHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 124 ~V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
++.+.+.|.+.+..+.+.+.++|+.
T Consensus 62 k~tvyl~d~~df~~~n~v~~~~f~~ 86 (122)
T 3k12_A 62 SVRILLAHREDYAGLNQVWDQWFPE 86 (122)
T ss_dssp EEEEEESCGGGHHHHHHHHTTTSCT
T ss_pred EEEEEEcCchHHHHHHHHHHHHhCC
Confidence 3344445556788888888888863
No 54
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=27.99 E-value=57 Score=21.81 Aligned_cols=24 Identities=13% Similarity=-0.014 Sum_probs=15.4
Q ss_pred hhhhheechhhHHHHHHHHhhccc
Q 031946 125 VHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 125 V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
+.+.+.|.+.+..+.+.+.++|+.
T Consensus 87 ~tvyl~d~~df~~~n~v~~~~f~~ 110 (140)
T 2b33_A 87 VTVFTTSMDYFQRVNEVYSRYFGD 110 (140)
T ss_dssp EEEEESCGGGHHHHHHHHHHHHTT
T ss_pred EEEEECCchhHHHHHHHHHHHCCC
Confidence 334445556777777777777753
No 55
>1jd1_A Hypothetical 13.9 kDa protein in FCY2-PET117 intergenic region; translation inhibitor, structural genomics, PSI; 1.70A {Saccharomyces cerevisiae} SCOP: d.79.1.1
Probab=27.91 E-value=54 Score=21.38 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=17.2
Q ss_pred hhhhhheechhhHHHHHHHHhhccc
Q 031946 124 EVHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 124 ~V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
++.+.+.|.+.+..+.+.+.++|+.
T Consensus 76 k~~vyl~d~~d~~~~n~~~~~~f~~ 100 (129)
T 1jd1_A 76 KVNIFLADINHFAEFNSVYAKYFNT 100 (129)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHSSS
T ss_pred EEEEEEcChHHHHHHHHHHHHHcCC
Confidence 3444555666788888888888864
No 56
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=27.69 E-value=1.4e+02 Score=22.13 Aligned_cols=48 Identities=8% Similarity=0.186 Sum_probs=32.1
Q ss_pred hhhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 68 EASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 68 ~~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
.+...+.++.+++.|.+.|.+.|.+|.... . ..++.-+.+.+.+++..
T Consensus 109 ~~~~~~~~~~~i~~A~~lG~~~v~~~~~~~---~-~~~~~~~~~~~~l~~l~ 156 (305)
T 3obe_A 109 MPKFDEFWKKATDIHAELGVSCMVQPSLPR---I-ENEDDAKVVSEIFNRAG 156 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEECCCCC---C-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeCCCCC---C-CCHHHHHHHHHHHHHHH
Confidence 356677899999999999999999974322 1 23344455555555544
No 57
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=27.50 E-value=55 Score=21.51 Aligned_cols=25 Identities=8% Similarity=-0.146 Sum_probs=16.4
Q ss_pred hhhhhheechhhHHHHHHHHhhccc
Q 031946 124 EVHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 124 ~V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
++.+.+.|.+.+..+.+.+.++|+.
T Consensus 70 k~tvyl~d~~df~~~n~v~~~~f~~ 94 (128)
T 3kjj_A 70 DAVIYLRDMGDYAEMNGVWDAWVAA 94 (128)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHSCT
T ss_pred EEEEEECCHHHHHHHHHHHHHHhCC
Confidence 3444445556778888888888863
No 58
>1x25_A Hypothetical UPF0076 protein ST0811; YJGF-like protein, archaea, structural genomics, UNK function; 2.00A {Sulfolobus tokodaii} SCOP: d.79.1.1
Probab=27.46 E-value=56 Score=21.28 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=16.3
Q ss_pred hhhhheechhhHHHHHHHHhhccc
Q 031946 125 VHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 125 V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
+.+.+.|.+.+..+.+.+.++|+.
T Consensus 77 ~~vyl~d~~~~~~~n~~~~~~f~~ 100 (128)
T 1x25_A 77 AFVFLKDMNMFNDFNSVYAEYFKD 100 (128)
T ss_dssp EEEEESCGGGHHHHHHHHHHHCCS
T ss_pred EEEEECCHHHHHHHHHHHHHHcCC
Confidence 334455566788888888888853
No 59
>1xrg_A Putative translation initiation inhibitor, YJGF family; conserved hypothetical protein, protein structure initiative, PSI; 2.20A {Clostridium thermocellum} SCOP: d.79.1.1
Probab=27.25 E-value=66 Score=21.97 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHhh----chh---hhhhhheechhhHHHHHHHHhhccc
Q 031946 104 HEEAATIAISTVKEFAN----DFK---EVHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 104 ~~~~a~~~l~~i~~~~~----~l~---~V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
.++-++..++.+..-++ +++ ++.+.+.|.+.+..+.+.+.++|+.
T Consensus 78 ~~~Qt~~~l~ni~~iL~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~f~~ 129 (156)
T 1xrg_A 78 IEEQAKQVLENLKNVLEAAGSSLNKVVKTTVFIKDMDSFAKVNEVYAKYFSE 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHEEEEEEEECChHHHHHHHHHHHHHcCC
Confidence 34444555555555443 333 3444555667888899999998864
No 60
>1pf5_A Hypothetical protein YJGH; structural genomics, beta barrel, PSI, protein structure INI midwest center for structural genomics, MCSG; 2.50A {Escherichia coli} SCOP: d.79.1.1
Probab=27.15 E-value=68 Score=20.90 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHhh----chh---hhhhhheec-hhhHHHHHHHHhhccc
Q 031946 105 EEAATIAISTVKEFAN----DFK---EVHFVLFTD-DLYNLWLEKARELLSF 148 (150)
Q Consensus 105 ~~~a~~~l~~i~~~~~----~l~---~V~~v~~~~-~~~~~f~~~~~~~f~~ 148 (150)
++-++..++.+..-++ +++ ++.+.+.|. +.+..+.+.+.++|+.
T Consensus 50 ~~Q~~~~l~ni~~~L~~aG~~~~~vvk~~vyl~d~~~~~~~~~~~~~~~f~~ 101 (131)
T 1pf5_A 50 QQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPENQFEDIMTVKNEIFSA 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCGGGEEEEEEEESSGGGTHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCcHHhHHHHHHHHHHHcCC
Confidence 3444444444444443 233 333444555 7788899888888863
No 61
>3biy_A Histone acetyltransferase P300; P300 HAT, bisubstrate inhibitor, protein-inhibitor complex; HET: 01K; 1.70A {Homo sapiens}
Probab=26.67 E-value=42 Score=26.77 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=28.2
Q ss_pred cccceeecccccccCCChhhhHHHHhhhhhhhhhhcCc
Q 031946 50 ASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNI 87 (150)
Q Consensus 50 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~ 87 (150)
-+||+|+. |.++.- .....|+.=|.++|+.|.+.|+
T Consensus 158 DDYIF~~H-P~~Qk~-p~~~rL~~WY~~mL~kg~~~gi 193 (380)
T 3biy_A 158 DDYIFHCH-PPDQKI-PKPKRLQEWYKKMLDKAVSERI 193 (380)
T ss_dssp CCSSSSSC-CTTCCC-CCHHHHHHHHHHHHHHHHHTTS
T ss_pred CceEEeeC-ccccCC-CCcHHHHHHHHHHHHHHHHcCe
Confidence 57999987 555543 3467999999999999988875
No 62
>3kwr_A Putative RNA-binding protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS binding protein; HET: GOL; 1.45A {Lactobacillus plantarum}
Probab=25.96 E-value=63 Score=20.40 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=30.4
Q ss_pred Cceeeeecce-eccccccchhHHHHHHHHHHHHHhhc
Q 031946 86 NIQYIAFPAI-SCGLYCYPHEEAATIAISTVKEFAND 121 (150)
Q Consensus 86 ~~~sia~P~l-gtG~~~~p~~~~a~~~l~~i~~~~~~ 121 (150)
+.=.+.||.| |+-..|-..+++.+-+-+++..|+..
T Consensus 20 ~gy~v~fPDlPGc~T~GdT~eEAl~nA~EAL~~~Le~ 56 (97)
T 3kwr_A 20 TYWDVRFPDVPAAQTFGASVQVAADNAANALAIALFE 56 (97)
T ss_dssp SSEEEECTTCGGGCEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCCcEEecCCHHHHHHHHHHHHHHHHHh
Confidence 4467899999 78888999999999999999988853
No 63
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=25.96 E-value=1.3e+02 Score=22.13 Aligned_cols=48 Identities=8% Similarity=0.160 Sum_probs=33.4
Q ss_pred hhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh
Q 031946 69 ASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN 120 (150)
Q Consensus 69 ~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~ 120 (150)
+...+.++.++..|.+.|.+.|.+|..... +.++.-+.+.+.+++..+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~----~~~~~~~~~~~~l~~l~~ 151 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLGCKYLIQPMMPTI----TTHDEAKLVCDIFNQASD 151 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECSCCCC----CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCCCC----CCHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999854221 234444555666655544
No 64
>3m1x_A Putative endoribonuclease L-PSP; structural genomics, seattle structural genomics center for infectious disease, ssgcid, unknown function; HET: FLC; 1.20A {Entamoeba histolytica} PDB: 3m4s_A 3mqw_A*
Probab=25.90 E-value=52 Score=22.22 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=29.2
Q ss_pred chhHHHHHHHHHHHHHhh----chh---hhhhhheechhhHHHHHHHHhhcc
Q 031946 103 PHEEAATIAISTVKEFAN----DFK---EVHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 103 p~~~~a~~~l~~i~~~~~----~l~---~V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
+.++-++..++.+..-++ +++ ++.+.+.|.+.+..+.+.+.++|+
T Consensus 69 d~~~Q~~~~l~nl~aiL~~aG~~l~~Vvk~tvyl~d~~df~~~n~v~~~~fg 120 (148)
T 3m1x_A 69 TIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFG 120 (148)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHhC
Confidence 345666666666666654 343 344455666678888888888886
No 65
>3v4d_A Aminoacrylate peracid reductase RUTC; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 1.95A {Escherichia coli O6}
Probab=25.33 E-value=61 Score=21.30 Aligned_cols=24 Identities=13% Similarity=-0.054 Sum_probs=16.7
Q ss_pred hhhhhheechhhHHHHHHHHhhcc
Q 031946 124 EVHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 124 ~V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
++.+.+.|.+.+..+.+.+.++|+
T Consensus 81 k~~vyl~d~~~f~~~n~v~~~~f~ 104 (134)
T 3v4d_A 81 FNSIFITDWKNYAAINEIYAEFFP 104 (134)
T ss_dssp EEEEEESCGGGHHHHHHHHHHHCC
T ss_pred EEEEEECCHHHHHHHHHHHHHHcC
Confidence 344445566678888888888886
No 66
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=25.05 E-value=78 Score=23.12 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=28.6
Q ss_pred CcccceeecccccccCCC-hhhhHHHHhhhhhhhhhhcCceeeeec
Q 031946 49 PASHVIHTVGPIYGVTIN-PEASLRSAYKNSLSLAKANNIQYIAFP 93 (150)
Q Consensus 49 ~~k~IiH~v~P~~~~~~~-~~~~L~~~~~~~L~~a~~~~~~sia~P 93 (150)
.++.|||++++....... ..+.=-....++++.|.+.+.+.+.+.
T Consensus 62 ~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~ 107 (311)
T 3m2p_A 62 DVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYA 107 (311)
T ss_dssp TCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 578999999875432111 111223346788888888888877663
No 67
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025 putative translation initiation inhibitor; 2.15A {Streptococcus pyogenes} SCOP: d.79.1.1
Probab=24.97 E-value=62 Score=21.11 Aligned_cols=24 Identities=4% Similarity=-0.165 Sum_probs=15.7
Q ss_pred hhhhheechhhHHHHHHHHhhccc
Q 031946 125 VHFVLFTDDLYNLWLEKARELLSF 148 (150)
Q Consensus 125 V~~v~~~~~~~~~f~~~~~~~f~~ 148 (150)
+.+.+.|.+.+..+.+.+.++|+.
T Consensus 66 ~~vyl~d~~df~~~n~v~~~~f~~ 89 (126)
T 2ewc_A 66 MDCLFRDVWNIPVMEKMIKERFNG 89 (126)
T ss_dssp EEEEESSGGGHHHHHHHHHHHSTT
T ss_pred EEEEECChhHHHHHHHHHHHHcCC
Confidence 334445556777888888877753
No 68
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=24.41 E-value=46 Score=21.63 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=12.4
Q ss_pred hhheechhhHHHHHHHHhhcc
Q 031946 127 FVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 127 ~v~~~~~~~~~f~~~~~~~f~ 147 (150)
+.+.|.+.+..+.+.+.++|+
T Consensus 77 vyl~d~~~~~~~n~~~~~~f~ 97 (126)
T 2dyy_A 77 VYLKDMNDFAKMNEVYAEYFG 97 (126)
T ss_dssp EEECC-CCTTHHHHHHHHHHT
T ss_pred EEEcCHHHHHHHHHHHHHHcC
Confidence 344455566667777777764
No 69
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=24.40 E-value=23 Score=26.50 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=21.8
Q ss_pred HHHhhhhhhhhhhcCceeeeecceeccccccchhHHH
Q 031946 72 RSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAA 108 (150)
Q Consensus 72 ~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a 108 (150)
.+.+++++..|.+.|++.+.+=+++|.++.=|++++.
T Consensus 50 ~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~ 86 (249)
T 1f75_A 50 MQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVN 86 (249)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEC------------C
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHH
Confidence 4577888888899999999999999999999988775
No 70
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis}
Probab=23.84 E-value=63 Score=21.93 Aligned_cols=23 Identities=4% Similarity=-0.104 Sum_probs=14.3
Q ss_pred hhhhheechhhHHHHHHHHhhcc
Q 031946 125 VHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 125 V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
+.+.+.|.+.+..+.+.+.++|+
T Consensus 69 ~tvyl~d~~df~~~n~v~~~~f~ 91 (149)
T 3i7t_A 69 TRIYVTDISRWREVGEVHAQAFG 91 (149)
T ss_dssp EEEEESCGGGHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHHHHcC
Confidence 33444455567777777777775
No 71
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=23.19 E-value=1.3e+02 Score=21.43 Aligned_cols=50 Identities=10% Similarity=0.166 Sum_probs=32.8
Q ss_pred hhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHh
Q 031946 69 ASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFA 119 (150)
Q Consensus 69 ~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~ 119 (150)
+.-.+.++.+++.|.+.|.+.|.+.+ |......+.++.-+.+.+.+++.+
T Consensus 85 ~~~~~~~~~~i~~A~~lGa~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~l~ 134 (285)
T 1qtw_A 85 EKSRDAFIDEMQRCEQLGLSLLNFHP-GSHLMQISEEDCLARIAESINIAL 134 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECC-CBCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECc-CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 44556788899999999999997632 111222356666666666666654
No 72
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=23.06 E-value=2e+02 Score=20.33 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=26.8
Q ss_pred cccceeecccccccCCChhhhHHHHhhhhhhhhhhcCceeeeecc
Q 031946 50 ASHVIHTVGPIYGVTINPEASLRSAYKNSLSLAKANNIQYIAFPA 94 (150)
Q Consensus 50 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sia~P~ 94 (150)
++.|||++++.+.. ... -....++++.|.+.+.+.+.+..
T Consensus 67 ~d~vi~~a~~~~~~----~~n-~~~~~~l~~a~~~~~~~~~v~~S 106 (287)
T 2jl1_A 67 VSKLLFISGPHYDN----TLL-IVQHANVVKAARDAGVKHIAYTG 106 (287)
T ss_dssp CSEEEECCCCCSCH----HHH-HHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCEEEEcCCCCcCc----hHH-HHHHHHHHHHHHHcCCCEEEEEC
Confidence 68999999875421 112 23557788888888887776643
No 73
>3quw_A Protein MMF1; chorismate mutase fold, intact mitochondria maintenance, mitochondrial protein, protein binding; 1.75A {Saccharomyces cerevisiae}
Probab=22.91 E-value=71 Score=21.77 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHhh----chh---hhhhhheechhhHHHHHHHHhhcc
Q 031946 105 EEAATIAISTVKEFAN----DFK---EVHFVLFTDDLYNLWLEKARELLS 147 (150)
Q Consensus 105 ~~~a~~~l~~i~~~~~----~l~---~V~~v~~~~~~~~~f~~~~~~~f~ 147 (150)
++.++..++.+..-++ +++ ++.+.+.|.+.+..+.+.+.++|+
T Consensus 74 ~~Qt~~~l~Ni~a~L~~aG~~l~dVVkvtvyl~d~~df~~~n~v~~~~f~ 123 (153)
T 3quw_A 74 SEKAEQVFQNVKNILAESNSSLDNIVKVNVFLADMKNFAEFNSVYAKHFH 123 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcC
Confidence 4455555555555543 333 344555666788888888888886
No 74
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=22.81 E-value=92 Score=23.35 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=26.3
Q ss_pred CcccceeecccccccCCChhhhHH---HHhhhhhhhhhhcCceeeee
Q 031946 49 PASHVIHTVGPIYGVTINPEASLR---SAYKNSLSLAKANNIQYIAF 92 (150)
Q Consensus 49 ~~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~sia~ 92 (150)
.++.|||++++.-....+....++ ....++++.|.+.+.+ +.+
T Consensus 90 ~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~ 135 (362)
T 3sxp_A 90 HFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIY 135 (362)
T ss_dssp CCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEE
T ss_pred CCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEE
Confidence 578999999864221112222222 4566788888888877 444
No 75
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Probab=22.48 E-value=1.1e+02 Score=22.50 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=26.2
Q ss_pred cccceeecccccccCCChh-hhH---HHHhhhhhhhhhhcC-ceeeeecc
Q 031946 50 ASHVIHTVGPIYGVTINPE-ASL---RSAYKNSLSLAKANN-IQYIAFPA 94 (150)
Q Consensus 50 ~k~IiH~v~P~~~~~~~~~-~~L---~~~~~~~L~~a~~~~-~~sia~P~ 94 (150)
++.|||+++|......+.. ..+ -....++++.|.+.+ .+.|.+..
T Consensus 78 ~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~S 127 (337)
T 2c29_D 78 CTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTS 127 (337)
T ss_dssp CSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEee
Confidence 6899999987511111111 122 234567778777766 67776643
No 76
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=20.69 E-value=97 Score=18.79 Aligned_cols=37 Identities=8% Similarity=0.057 Sum_probs=30.7
Q ss_pred hcCceeeeecce-eccccccchhHHHHHHHHHHHHHhh
Q 031946 84 ANNIQYIAFPAI-SCGLYCYPHEEAATIAISTVKEFAN 120 (150)
Q Consensus 84 ~~~~~sia~P~l-gtG~~~~p~~~~a~~~l~~i~~~~~ 120 (150)
+.|.=.+.||.+ |+-..|-..+++..-+-+++..|+.
T Consensus 25 edg~y~~~~Pdlpgc~t~G~T~eEA~~~a~eAl~~~le 62 (87)
T 2dsy_A 25 DEEPYYGEIPDLPGVWATGKSLKECEANLQAALEDWLL 62 (87)
T ss_dssp SSSCEEEECTTSTTCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCeeEeeCCHHHHHHHHHHHHHHHHH
Confidence 455567889998 7778889999999999999988875
No 77
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=20.25 E-value=2e+02 Score=20.72 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=32.9
Q ss_pred hhHHHHhhhhhhhhhhcCceeeeecceeccccccchhHHHHHHHHHHHHHhh
Q 031946 69 ASLRSAYKNSLSLAKANNIQYIAFPAISCGLYCYPHEEAATIAISTVKEFAN 120 (150)
Q Consensus 69 ~~L~~~~~~~L~~a~~~~~~sia~P~lgtG~~~~p~~~~a~~~l~~i~~~~~ 120 (150)
+...+.++.+++.|.+.|.+.|.++.... ..+.+.++.-+.+.+.+.+..+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~ 154 (295)
T 3cqj_A 104 AQGLEIMRKAIQFAQDVGIRVIQLAGYDV-YYQEANNETRRRFRDGLKESVE 154 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECCCSC-SSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCCC-CcCcCHHHHHHHHHHHHHHHHH
Confidence 45556788999999999999999873211 0223445555566666655543
Done!