BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031951
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 218 bits (554), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/149 (69%), Positives = 121/149 (81%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL+DLQ DPP+ CSAGP+ + LF WQAT++GP+DSPY GG+F + I+FP DY
Sbjct: 6 MALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDY 65
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF TK++HPNIN+NGSICLDIL+ QWSPALT+SKVLLSICSLL
Sbjct: 66 PFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLC--DPNPDDP 123
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVP+IAH+ K+DK KY LAR WTQKYAM
Sbjct: 124 LVPDIAHIYKSDKEKYNRLAREWTQKYAM 152
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 216 bits (550), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 100/148 (67%), Positives = 123/148 (83%), Gaps = 2/148 (1%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
+SKRI KEL DL+ DPP+SCSAGP+ + L+ WQA+++GP DSPYAGG+F ++I+FP DYP
Sbjct: 3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYP 62
Query: 62 FKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXL 121
FKPPK++F TK++HPNIN NG+ICLDILKDQWSPALT+SKVLLSICSLLT L
Sbjct: 63 FKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLT--DANPDDPL 120
Query: 122 VPEIAHLCKTDKLKYENLARNWTQKYAM 149
VPEIAH+ KTD+ KYE AR WT+KYA+
Sbjct: 121 VPEIAHIYKTDRPKYEATAREWTKKYAV 148
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 214 bits (545), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 100/150 (66%), Positives = 117/150 (78%), Gaps = 2/150 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSI LDIL+ QWSPALTISKVLLSICSLL
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 120
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAMG 150
LVPEIA + KTD+ KY +AR WTQKYAMG
Sbjct: 121 LVPEIARIYKTDREKYNRIAREWTQKYAMG 150
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 211 bits (536), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 117/149 (78%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSICLDIL+ QWSPALTISKVLLSICSLL
Sbjct: 79 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 136
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY +AR WTQKYAM
Sbjct: 137 LVPEIARIYKTDREKYNRIAREWTQKYAM 165
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 210 bits (535), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 117/149 (78%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSICLDIL+ QWSPALTISKVLLSICSLL
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 120
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY +AR WTQKYAM
Sbjct: 121 LVPEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 210 bits (535), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 117/149 (78%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSICLDIL+ QWSPALTISKVLLSICSLL
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 120
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY +AR WTQKYAM
Sbjct: 121 LVPEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 210 bits (535), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 117/149 (78%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSICLDIL+ QWSPALTISKVLLSICSLL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 118
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY +AR WTQKYAM
Sbjct: 119 LVPEIARIYKTDREKYNRIAREWTQKYAM 147
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 210 bits (535), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 117/149 (78%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 6 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 65
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSICLDIL+ QWSPALTISKVLLSICSLL
Sbjct: 66 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 123
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY +AR WTQKYAM
Sbjct: 124 LVPEIARIYKTDREKYNRIAREWTQKYAM 152
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 210 bits (535), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/149 (67%), Positives = 120/149 (80%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI +EL DL DPPSS SAGP+ + LF WQAT++GP DSPYAGG+F ++I+FP DY
Sbjct: 1 MALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKV F T+++HPNIN+NGSICLDIL+DQWSPALTISKVLLSI SLLT
Sbjct: 61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLT--DPNPDDP 118
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIAH+ KTD+ +YE AR WT+KYA+
Sbjct: 119 LVPEIAHVYKTDRSRYELSAREWTRKYAI 147
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 209 bits (533), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 116/149 (77%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT +GP DSPY GG+F + I+FP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSICLDIL+ QWSPALTISKVLLSICSLL
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 120
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY +AR WTQKYAM
Sbjct: 121 LVPEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 209 bits (533), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 118/149 (79%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL+DL DPP+ CSAGP+ + LF WQAT++GP +SPY GG+F + I+FP DY
Sbjct: 4 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 63
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSICLDIL+ QWSPALTISKVLLSICSLL
Sbjct: 64 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 121
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ +Y LAR WTQKYAM
Sbjct: 122 LVPEIARIYKTDRERYNQLAREWTQKYAM 150
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 209 bits (533), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/149 (66%), Positives = 117/149 (78%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 11 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 70
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSICLDIL+ QWSPALTISKVLLSICSLL
Sbjct: 71 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 128
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + +TD+ KY +AR WTQKYAM
Sbjct: 129 LVPEIARIYQTDREKYNRIAREWTQKYAM 157
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 209 bits (532), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 99/149 (66%), Positives = 117/149 (78%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 11 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 70
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSICLDIL+ QWSPALTISKVLLSICSLL
Sbjct: 71 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 128
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY ++R WTQKYAM
Sbjct: 129 LVPEIARIYKTDRDKYNRISREWTQKYAM 157
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 209 bits (531), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 99/149 (66%), Positives = 116/149 (77%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSICLD L+ QWSPALTISKVLLSICSLL
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLC--DPNPDDP 120
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY +AR WTQKYAM
Sbjct: 121 LVPEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 209 bits (531), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 99/149 (66%), Positives = 116/149 (77%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 3 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSICLDIL+ QW PALTISKVLLSICSLL
Sbjct: 63 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLC--DPNPDDP 120
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY +AR WTQKYAM
Sbjct: 121 LVPEIARIYKTDREKYNRIAREWTQKYAM 149
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 208 bits (530), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 99/149 (66%), Positives = 117/149 (78%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 9 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 68
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSICLDIL+ QWSPALTISKVLLSICSLL
Sbjct: 69 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 126
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY ++R WTQKYAM
Sbjct: 127 LVPEIARIYKTDRDKYNRISREWTQKYAM 155
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 207 bits (528), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 97/147 (65%), Positives = 118/147 (80%), Gaps = 2/147 (1%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
A KRI KEL DL DPP++CSAGP+ + +F WQAT++GP DSPY+GG+F + I+FP DYP
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 62 FKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXL 121
FKPPKV F TK++HPNIN+ G+ICLDILKDQWSPALTISKVLLSI SLLT L
Sbjct: 82 FKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLT--DPNPDDPL 139
Query: 122 VPEIAHLCKTDKLKYENLARNWTQKYA 148
VPEIAHL K+D+++Y+ AR W+QKYA
Sbjct: 140 VPEIAHLYKSDRMRYDQTAREWSQKYA 166
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 207 bits (527), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/149 (66%), Positives = 116/149 (77%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 4 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 63
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSI LDIL+ QWSPALTISKVLLSICSLL
Sbjct: 64 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 121
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY +AR WTQKYAM
Sbjct: 122 LVPEIARIYKTDREKYNRIAREWTQKYAM 150
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 207 bits (526), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/149 (66%), Positives = 116/149 (77%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 19 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 78
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSI LDIL+ QWSPALTISKVLLSICSLL
Sbjct: 79 PFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 136
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY +AR WTQKYAM
Sbjct: 137 LVPEIARIYKTDREKYNRIAREWTQKYAM 165
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 206 bits (525), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/148 (66%), Positives = 116/148 (78%), Gaps = 2/148 (1%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
A KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DYP
Sbjct: 4 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 62 FKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXL 121
FKPPKVAF T+++HPNIN+NGSICLDIL+ QWSPALTISKVLLSICSLL L
Sbjct: 64 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC--DPNPDDPL 121
Query: 122 VPEIAHLCKTDKLKYENLARNWTQKYAM 149
VPEIA + KTD+ KY ++R WTQKYAM
Sbjct: 122 VPEIARIYKTDRDKYNRISREWTQKYAM 149
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 206 bits (525), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/148 (66%), Positives = 116/148 (78%), Gaps = 2/148 (1%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
A KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DYP
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 62 FKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXL 121
FKPPKVAF T+++HPNIN+NGSICLDIL+ QWSPALTISKVLLSICSLL L
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLC--DPNPDDPL 118
Query: 122 VPEIAHLCKTDKLKYENLARNWTQKYAM 149
VPEIA + KTD+ KY ++R WTQKYAM
Sbjct: 119 VPEIARIYKTDRDKYNRISREWTQKYAM 146
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 206 bits (524), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 98/149 (65%), Positives = 116/149 (77%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DLQ DPP+ CSAGP+ + LF WQAT++GP DS Y GG+F + ++FP DY
Sbjct: 7 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPK+AF TK++HPNIN+NGSICLDIL+ QWSPALT+SKVLLSICSLL
Sbjct: 67 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLC--DPNPDDP 124
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVP+IA + K+DK KY AR WTQKYAM
Sbjct: 125 LVPDIAQIYKSDKEKYNRHAREWTQKYAM 153
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 206 bits (524), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 98/149 (65%), Positives = 116/149 (77%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DLQ DPP+ CSAGP+ + LF WQAT++GP DS Y GG+F + ++FP DY
Sbjct: 19 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 78
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPK+AF TK++HPNIN+NGSICLDIL+ QWSPALT+SKVLLSICSLL
Sbjct: 79 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLC--DPNPDDP 136
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVP+IA + K+DK KY AR WTQKYAM
Sbjct: 137 LVPDIAQIYKSDKEKYNRHAREWTQKYAM 165
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 206 bits (523), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 98/149 (65%), Positives = 116/149 (77%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DLQ DPP+ CSAGP+ + LF WQAT++GP DS Y GG+F + ++FP DY
Sbjct: 3 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 62
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPK+AF TK++HPNIN+NGSICLDIL+ QWSPALT+SKVLLSICSLL
Sbjct: 63 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLC--DPNPDDP 120
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVP+IA + K+DK KY AR WTQKYAM
Sbjct: 121 LVPDIAQIYKSDKEKYNRHAREWTQKYAM 149
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 205 bits (522), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 98/149 (65%), Positives = 116/149 (77%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HPNIN+NGSI LDIL+ QWSPALTISKVLLSICSLL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 118
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY ++R WTQKYAM
Sbjct: 119 LVPEIARIYKTDRDKYNRISREWTQKYAM 147
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 205 bits (522), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 98/148 (66%), Positives = 115/148 (77%), Gaps = 2/148 (1%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
ASKRI KEL DL DPP+ CSAGP+ + +F WQAT++GP DSPY GG+F + I+FP DYP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 62 FKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXL 121
FKPPKVAF T+++HPNIN+NGSI LDIL+ QWSPAL ISKVLLSICSLL L
Sbjct: 61 FKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLC--DPNPDDPL 118
Query: 122 VPEIAHLCKTDKLKYENLARNWTQKYAM 149
VPEIA + KTD+ KY +AR WTQKYAM
Sbjct: 119 VPEIARIYKTDREKYNRIAREWTQKYAM 146
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 202 bits (515), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 97/149 (65%), Positives = 114/149 (76%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DL DPP+ C AGP+ + +F WQAT++GP DSPY GG+F + I+FP DY
Sbjct: 1 MALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPKVAF T+++HP IN+NGSI LDIL+ QWSPALTISKVLLSICSLL
Sbjct: 61 PFKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLC--DPNPDDP 118
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVPEIA + KTD+ KY +AR WTQKYAM
Sbjct: 119 LVPEIARIYKTDREKYNRIAREWTQKYAM 147
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 200 bits (509), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 114/149 (76%), Gaps = 2/149 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA KRI KEL DLQ DPP+ C AGP+ + LF WQAT++GP DS Y GG+F + ++FP DY
Sbjct: 7 MALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDY 66
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFKPPK+AF TK++HPNIN+NGSI LDIL+ QWSPALT+SKVLLSICSLL
Sbjct: 67 PFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLC--DPNPDDP 124
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYAM 149
LVP+IA + K+DK KY AR WTQKYAM
Sbjct: 125 LVPDIAQIYKSDKEKYNRHAREWTQKYAM 153
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 188 bits (477), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 87/148 (58%), Positives = 112/148 (75%), Gaps = 2/148 (1%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
MA +RI KELR++Q DPP +CSAGP+ + +F W AT+ GP DSPY GG+F + ++FP DY
Sbjct: 4 MAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDY 63
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
PFK P+V F TKV+HPNIN NG ICLDILKDQWSPALT+S+VLLSI SLLT
Sbjct: 64 PFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLT--DPNPSDP 121
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYA 148
L PE+A++ + +K ++E+ AR WT+ YA
Sbjct: 122 LDPEVANVLRANKKQFEDTAREWTRMYA 149
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 169 bits (429), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 107/147 (72%), Gaps = 2/147 (1%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
++KRI KEL D+ DPP +CSAGP + ++ W++T++GP S Y GG+F + I F P+YP
Sbjct: 49 SAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYP 108
Query: 62 FKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXL 121
FKPPKV F+T+++H NIN+ G ICLDILKD WSPALTISKVLLSICSLLT L
Sbjct: 109 FKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLT--DCNPADPL 166
Query: 122 VPEIAHLCKTDKLKYENLARNWTQKYA 148
V IA T++ +++ +AR WT++YA
Sbjct: 167 VGSIATQYMTNRAEHDRMARQWTKRYA 193
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 168 bits (426), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 107/147 (72%), Gaps = 2/147 (1%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
++KRI KEL ++ DPP +CSAGP + ++ W++T++GP S Y GG+F + I F PDYP
Sbjct: 4 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 63
Query: 62 FKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXL 121
FKPPKV F+T+++H NIN+ G ICLDILKD WSPALTISKVLLSICSLLT L
Sbjct: 64 FKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLT--DCNPADPL 121
Query: 122 VPEIAHLCKTDKLKYENLARNWTQKYA 148
V IA T++ +++ +AR WT++YA
Sbjct: 122 VGSIATQYMTNRAEHDRMARQWTKRYA 148
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFK 63
+RI KE ++L ++PP A P+ E + + GP +PY GG + + + P YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 64 PPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXLVP 123
PPKV F TK++HPNI+ G ICLDILKD+WSPAL I VLLSI +LL+ L
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS--SPEPDDPLDS 121
Query: 124 EIAHLCKTDKLKYENLARNWTQKYA 148
++A K DK E++AR W + YA
Sbjct: 122 KVAEHFKQDKNDAEHVARQWNKIYA 146
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 122 bits (306), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFK 63
+RI KE ++L ++PP A P+ E + + GP +PY GG + + + P YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 64 PPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXLVP 123
PPKV F TK++HPNI+ G ICLDILKD+WSPAL I VLLSI +LL+ L
Sbjct: 64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLS--SPEPDDPLDS 121
Query: 124 EIAHLCKTDKLKYENLARNWTQKYA 148
++A K DK E++AR W + YA
Sbjct: 122 KVAEHFKQDKNDAEHVARQWNKIYA 146
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 119 bits (298), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFK 63
+RIIKE + L ++P A P + + GP DSP+ GG F + + P +YP
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 64 PPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXLVP 123
PKV F TK++HPN++ G ICLDILKD+WSPAL I VLLSI +LL+ L
Sbjct: 68 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLS--APNPDDPLAN 125
Query: 124 EIAHLCKTDKLKYENLARNWTQKYAM 149
++A KT++ + AR WT+ YAM
Sbjct: 126 DVAEQWKTNEAQAIETARAWTRLYAM 151
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 119 bits (298), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFK 63
+RIIKE + L ++P A P + + GP DSP+ GG F + + P +YP
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 64 PPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXLVP 123
PKV F TK++HPN++ G ICLDILKD+WSPAL I VLLSI +LL+ L
Sbjct: 66 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLS--APNPDDPLAN 123
Query: 124 EIAHLCKTDKLKYENLARNWTQKYAMG 150
++A KT++ + AR WT+ YAM
Sbjct: 124 DVAEQWKTNEAQAIETARAWTRLYAMN 150
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 119 bits (298), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFK 63
+RIIKE + L ++P A P + + GP DSP+ GG F + + P +YP
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 64 PPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXLVP 123
PKV F TK++HPN++ G ICLDILKD+WSPAL I VLLSI +LL+ L
Sbjct: 69 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLS--APNPDDPLAN 126
Query: 124 EIAHLCKTDKLKYENLARNWTQKYAM 149
++A KT++ + AR WT+ YAM
Sbjct: 127 DVAEQWKTNEAQAIETARAWTRLYAM 152
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 119 bits (298), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFK 63
+RIIKE + L ++P A P + + GP DSP+ GG F + + P +YP
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 64 PPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXLVP 123
PKV F TK++HPN++ G ICLDILKD+WSPAL I VLLSI +LL+ L
Sbjct: 64 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLS--APNPDDPLAN 121
Query: 124 EIAHLCKTDKLKYENLARNWTQKYAMG 150
++A KT++ + AR WT+ YAM
Sbjct: 122 DVAEQWKTNEAQAIETARAWTRLYAMN 148
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 119 bits (298), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFK 63
+RIIKE + L ++P A P + + GP DSP+ GG F + + P +YP
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 64 PPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXLVP 123
PKV F TK++HPN++ G ICLDILKD+WSPAL I VLLSI +LL+ L
Sbjct: 71 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLS--APNPDDPLAN 128
Query: 124 EIAHLCKTDKLKYENLARNWTQKYAM 149
++A KT++ + AR WT+ YAM
Sbjct: 129 DVAEQWKTNEAQAIETARAWTRLYAM 154
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 73/109 (66%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
A KR++++ + LQ DPP+ S P + W A + GP D+P+ GG F +++ F DYP
Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYP 64
Query: 62 FKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLL 110
KPP V F +++FHPNI +GSICLDIL++QWSP ++ +L SI SLL
Sbjct: 65 NKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 113
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 117 bits (294), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Query: 1 MAS--KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPP 58
MAS KRIIKE L SDP +A P + L +Q T+ GP SPY GIF + + P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXX 118
DYP + PKV F TK++HPNI+ G ICLD+LK WSPAL I VLLSI +LL
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLA--SPNPN 118
Query: 119 XXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
L ++A ++ + AR WT+ YA
Sbjct: 119 DPLANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 83/145 (57%), Gaps = 2/145 (1%)
Query: 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFK 63
KRIIKE L SDP +A P + L +Q T+ GP SPY GIF + + P DYP +
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 64 PPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXLVP 123
PKV F TK++HPNI+ G ICLD+LK WSPAL I VLLSI +LL L
Sbjct: 68 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLA--SPNPNDPLAN 125
Query: 124 EIAHLCKTDKLKYENLARNWTQKYA 148
++A ++ + AR WT+ YA
Sbjct: 126 DVAEDWIKNEQGAKAKAREWTKLYA 150
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
A +R++++ + LQ DPP S P + +W A + GP +P+ G F + I F +YP
Sbjct: 5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYP 64
Query: 62 FKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXL 121
KPP V F +K+FHPN+ +GSICLDIL+++WSP +S +L SI SLL
Sbjct: 65 NKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPAN- 123
Query: 122 VPEIAHLCKTDKLKYE 137
+ A L + +K +YE
Sbjct: 124 -SQAAQLYQENKREYE 138
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 74/109 (67%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
+ +R++++ + LQ DPP+ S P + + W+A + GP ++P+ G F +++ F +YP
Sbjct: 5 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 64
Query: 62 FKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLL 110
KPP V F +K+FHPN+ +GSICLDIL+++WSP ++ +L SI SLL
Sbjct: 65 NKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLL 113
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 3/147 (2%)
Query: 5 RIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKP 64
R+ KEL+D++++ A F W + GP +PY GG F +AI P DYP+ P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 65 PKVAFKTKVFHPNINNN-GSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXLVP 123
PK+ F TK++HPNI++ G+ICLD+LK++WSPALTI LLSI +LL+
Sbjct: 87 PKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQD--A 144
Query: 124 EIAHLCKTDKLKYENLARNWTQKYAMG 150
E+A + K + + A WT+ +A G
Sbjct: 145 EVAKMYKENHALFVKTASVWTKTFATG 171
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 74/109 (67%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
+ +R++++ + LQ DPP+ S P + + W+A + GP ++P+ G F +++ F +YP
Sbjct: 8 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYP 67
Query: 62 FKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLL 110
KPP V F +K+FHPN+ +GSICLDIL+++WSP ++ +L SI SLL
Sbjct: 68 NKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLL 116
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 1 MAS--KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPP 58
MAS KRIIKE L SDP +A P + L +Q T+ GP SPY GIF + + P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXX 118
DYP + PKV F TK++HPNI+ G I LD+LK WSPAL I VLLSI +LL
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLA--SPNPN 118
Query: 119 XXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
L ++A ++ + AR WT+ YA
Sbjct: 119 DPLANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 84/147 (57%), Gaps = 7/147 (4%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
A +R++++ + ++ D P SA P+ + + W A +IGP D+PY G F + + F +YP
Sbjct: 5 ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYP 64
Query: 62 FKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXXL 121
KPP V F +++FHPN+ NG ICLDIL+++W+P ++ +L SI SL +
Sbjct: 65 NKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANV 124
Query: 122 VPEIAHLCKTDKLKY-----ENLARNW 143
E A L K K +Y E + ++W
Sbjct: 125 --EAATLFKDHKSQYVKRVKETVEKSW 149
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 1 MAS--KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPP 58
MAS KRIIKE L SDP +A P + L +Q T+ GP SPY GIF + + P
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 59 DYPFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXX 118
DYP + PKV F TK++HP I+ G I LD+LK WSPAL I VLLSI +LL
Sbjct: 61 DYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLA--SPNPN 118
Query: 119 XXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
L ++A ++ + AR WT+ YA
Sbjct: 119 DPLANDVAEDWIKNEQGAKAKAREWTKLYA 148
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 108 bits (271), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 16/158 (10%)
Query: 5 RIIKELRDLQ-------SDPPSS------CSAGPIAEGLFRWQATVIGPTDSPYAGGIFH 51
R++KEL D+Q S+P ++ SA + + RW+ + GP +PY GG F
Sbjct: 36 RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFT 95
Query: 52 VAINFPPDYPFKPPKVAFKTKVFHPNINNN-GSICLDILKDQWSPALTISKVLLSICSLL 110
+ I PPDYP+ PPK+ F TK++HPNI++ G+ICLDILK +WSPALTI LLSI ++L
Sbjct: 96 LDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAML 155
Query: 111 TXXXXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E+A + + + A+ WT+ +A
Sbjct: 156 ADPVPTDPQDA--EVAKMMIENHPLFVQTAKLWTETFA 191
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 4/148 (2%)
Query: 3 SKRIIKELRDLQSDPPSSCSAGPIAEG-LFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
+KRI+KE++ ++ DP + + ++E + + T +GP +PY GG F V I P +YP
Sbjct: 3 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62
Query: 62 FKPPKVAFKTKVFHPNINN-NGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
FKPPK+ F TKV+HPNI++ G+ICLDILK+ WSP +T+ L+S+ +LL
Sbjct: 63 FKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQD 122
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYA 148
E+A D+ + A WT+ YA
Sbjct: 123 A--EVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 88/148 (59%), Gaps = 4/148 (2%)
Query: 3 SKRIIKELRDLQSDPPSSCSAGPIAEG-LFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
+KRI+KE++ ++ DP + + ++E + + T +GP +PY GG F V I P +YP
Sbjct: 4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 63
Query: 62 FKPPKVAFKTKVFHPNINN-NGSICLDILKDQWSPALTISKVLLSICSLLTXXXXXXXXX 120
FKPPK+ F TKV+HPNI++ G+ICLDIL++ WSP +T+ L+S+ +LL
Sbjct: 64 FKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQD 123
Query: 121 LVPEIAHLCKTDKLKYENLARNWTQKYA 148
E+A D+ + A WT+ YA
Sbjct: 124 --AEVAQHYLRDRESFNKTAALWTRLYA 149
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 14/124 (11%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEG-LFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
A KR++KEL+ L D P AGP +E +F W + GP D+PYA G+F+ + FP DY
Sbjct: 5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDIL-------------KDQWSPALTISKVLLSIC 107
P PPK+ F + HPNI NG +C+ IL +++WSP ++ K+LLS+
Sbjct: 65 PLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVM 124
Query: 108 SLLT 111
S+L+
Sbjct: 125 SMLS 128
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 102 bits (255), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%)
Query: 3 SKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPF 62
SKR+ +ELR L +A P + LF+W AT+ GP D+ Y + + + FP DYP+
Sbjct: 11 SKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70
Query: 63 KPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLL 110
KPP V F T +HPN++ +G+ICLDILK+ W+ + + +LLS+ SLL
Sbjct: 71 KPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLL 118
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 16/159 (10%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPI-AEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
A KR++ E + L +PP AGP+ E F W+A ++GP D+ + G+F ++FP DY
Sbjct: 8 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 67
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILK-------------DQWSPALTISKVLLSIC 107
P PPK+ F ++FHPNI +G +C+ IL ++WSP ++ K+LLS+
Sbjct: 68 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 127
Query: 108 SLLTXXXXXXXXXLVPEIAHLCKTDKLKYENLARNWTQK 146
S+L + + + + + D+ ++ +A+ QK
Sbjct: 128 SMLAEPNDESGANV--DASKMWRDDREQFYKIAKQIVQK 164
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 16/159 (10%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPI-AEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
A KR++ E + L +PP AGP+ E F W+A ++GP D+ + G+F ++FP DY
Sbjct: 10 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 69
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILK-------------DQWSPALTISKVLLSIC 107
P PPK+ F ++FHPNI +G +C+ IL ++WSP ++ K+LLS+
Sbjct: 70 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 129
Query: 108 SLLTXXXXXXXXXLVPEIAHLCKTDKLKYENLARNWTQK 146
S+L + + + + + D+ ++ +A+ QK
Sbjct: 130 SMLAEPNDESGANV--DASKMWRDDREQFYKIAKQIVQK 166
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 16/159 (10%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPI-AEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
A KR++ E + L +PP AGP+ E F W+A ++GP D+ + G+F ++FP DY
Sbjct: 7 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 66
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILK-------------DQWSPALTISKVLLSIC 107
P PPK+ F ++FHPNI +G +C+ IL ++WSP ++ K+LLS+
Sbjct: 67 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 126
Query: 108 SLLTXXXXXXXXXLVPEIAHLCKTDKLKYENLARNWTQK 146
S+L + + + + + D+ ++ +A+ QK
Sbjct: 127 SMLAEPNDESGANV--DASKMWRDDREQFYKIAKQIVQK 163
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 101 bits (251), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 16/159 (10%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPI-AEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
A KR++ E + L +PP AGP+ E F W+A ++GP D+ + G+F ++FP DY
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILK-------------DQWSPALTISKVLLSIC 107
P PPK+ F ++FHPNI +G +C+ IL ++WSP ++ K+LLS+
Sbjct: 64 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVV 123
Query: 108 SLLTXXXXXXXXXLVPEIAHLCKTDKLKYENLARNWTQK 146
S+L + + + + + D+ ++ +A+ QK
Sbjct: 124 SMLAEPNDESGANV--DASKMWRDDREQFYKIAKQIVQK 160
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 63/107 (58%)
Query: 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFK 63
+ + KE+ L +DPP P E L Q T+ GP +PYAGG+F + + D+P
Sbjct: 16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPAS 75
Query: 64 PPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLL 110
PPK F TK+FHPN+ NG IC+++LK W+ L I VLL+I LL
Sbjct: 76 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLL 122
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 5/149 (3%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEG-LFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
AS+R++KEL +++ + + E L WQ ++ P + PY G F + INFP +Y
Sbjct: 5 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY 63
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILK-DQWSPALTISKVLLSICSLLTXXXXXXXX 119
PFKPPK+ FKTK++HPNI+ G +CL ++ + W PA +V+ S+ +L+
Sbjct: 64 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVN--DPQPEH 121
Query: 120 XLVPEIAHLCKTDKLKYENLARNWTQKYA 148
L ++A D+ K+ A +T+KY
Sbjct: 122 PLRADLAEEYSKDRKKFCKNAEEFTKKYG 150
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 5/149 (3%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEG-LFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
AS+R++KEL +++ + + E L WQ ++ P + PY G F + INFP +Y
Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEY 61
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILK-DQWSPALTISKVLLSICSLLTXXXXXXXX 119
PFKPPK+ FKTK++HPNI+ G +CL ++ + W PA +V+ S+ +L+
Sbjct: 62 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVN--DPQPEH 119
Query: 120 XLVPEIAHLCKTDKLKYENLARNWTQKYA 148
L ++A D+ K+ A +T+KY
Sbjct: 120 PLRADLAEEYSKDRKKFCKNAEEFTKKYG 148
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 14/118 (11%)
Query: 8 KELRDLQSDPPSSCSAGPIAEG-LFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPK 66
++L +L +P SAG I + L+RW+ +IGP D+ Y GG+F + FP DYP +PPK
Sbjct: 24 RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPK 83
Query: 67 VAFKTKVFHPNINNNGSICLDIL-------------KDQWSPALTISKVLLSICSLLT 111
+ F T+++HPN++ NG +C+ IL +++W P T+ +++S+ S+L
Sbjct: 84 MKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLA 141
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 95.5 bits (236), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 71/118 (60%), Gaps = 14/118 (11%)
Query: 8 KELRDLQSDPPSSCSAGPIAEG-LFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPK 66
K+L D++ P SAG + + +++W+ VIGP D+ Y GG F ++FP DYP KPPK
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 67 VAFKTKVFHPNINNNGSICLDILKD-------------QWSPALTISKVLLSICSLLT 111
+ F ++++HPNI+ G++C+ IL D +W P T+ +LLS+ S+LT
Sbjct: 70 MKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 85/150 (56%), Gaps = 6/150 (4%)
Query: 3 SKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPF 62
+ R+ +EL L ++PP + + + +A ++G ++PY G+F + + P YPF
Sbjct: 6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 63 KPPKVAFKTKVFHPNINNNGSICLDIL----KDQWSPALTISKVLLSICSLLTXXXXXXX 118
+PP++ F T ++HPNI++ G ICLD+L K W P+L I+ VL SI L++
Sbjct: 66 EPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMS--EPNPD 123
Query: 119 XXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
L+ +I+ K +K + AR WT+K+A
Sbjct: 124 DPLMADISSEFKYNKPAFLKNARQWTEKHA 153
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 1 MASKRIIKELRD-LQSDPPS--SCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFP 57
+A +RI +E ++ L+S+ S + E + + GP D+PY GG + + I P
Sbjct: 21 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 80
Query: 58 PDYPFKPPKVAFKTKVFHPNINN-NGSICLDILKDQWSPALTISKVLLSICSLLTXXXXX 116
YPF PPKV F TK++HPNI++ G+ICLDILKDQW+ A+T+ VLLS+ +LL
Sbjct: 81 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 140
Query: 117 XXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
V +A+ K + ++ AR W YA
Sbjct: 141 DPQDAV--VANQYKQNPEMFKQTARLWAHVYA 170
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 1 MASKRIIKELRD-LQSDPPS--SCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFP 57
+A +RI +E ++ L+S+ S + E + + GP D+PY GG + + I P
Sbjct: 57 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 116
Query: 58 PDYPFKPPKVAFKTKVFHPNINN-NGSICLDILKDQWSPALTISKVLLSICSLLTXXXXX 116
YPF PPKV F TK++HPNI++ G+ICLDILKDQW+ A+T+ VLLS+ +LL
Sbjct: 117 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 176
Query: 117 XXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
V +A+ K + ++ AR W YA
Sbjct: 177 DPQDAV--VANQYKQNPEMFKQTARLWAHVYA 206
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 1 MASKRIIKELRD-LQSDPPS--SCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFP 57
+A +RI +E ++ L+S+ S + E + + GP D+PY GG + + I P
Sbjct: 8 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 67
Query: 58 PDYPFKPPKVAFKTKVFHPNINN-NGSICLDILKDQWSPALTISKVLLSICSLLTXXXXX 116
YPF PPKV F TK++HPNI++ G+ICLDILKDQW+ A+T+ VLLS+ +LL
Sbjct: 68 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 127
Query: 117 XXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
V +A+ K + ++ AR W YA
Sbjct: 128 DPQDAV--VANQYKQNPEMFKQTARLWAHVYA 157
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 1 MASKRIIKELRD-LQSDPPS--SCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFP 57
+A +RI +E ++ L+S+ S + E + + GP D+PY GG + + I P
Sbjct: 6 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 65
Query: 58 PDYPFKPPKVAFKTKVFHPNINN-NGSICLDILKDQWSPALTISKVLLSICSLLTXXXXX 116
YPF PPKV F TK++HPNI++ G+ICLDILKDQW+ A+T+ VLLS+ +LL
Sbjct: 66 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 125
Query: 117 XXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
V +A+ K + ++ AR W YA
Sbjct: 126 DPQDAV--VANQYKQNPEMFKQTARLWAHVYA 155
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 1 MASKRIIKELRD-LQSDPPS--SCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFP 57
+A +RI +E ++ L+S+ S + E + + GP D+PY GG + + I P
Sbjct: 5 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIP 64
Query: 58 PDYPFKPPKVAFKTKVFHPNINN-NGSICLDILKDQWSPALTISKVLLSICSLLTXXXXX 116
YPF PPKV F TK++HPNI++ G+ICLDILKDQW+ A+T+ VLLS+ +LL
Sbjct: 65 ETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD 124
Query: 117 XXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
V +A+ K + ++ AR W YA
Sbjct: 125 DPQDAV--VANQYKQNPEMFKQTARLWAHVYA 154
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 89.0 bits (219), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 1 MASKRIIKELRDLQSDPPSSC-SAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPD 59
MAS R++KEL DLQ PP + + W A ++ P PY F++ I+FPP+
Sbjct: 1 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE 59
Query: 60 YPFKPPKVAFKTKVFHPNINNNGSICLDIL-KDQWSPALTISKVLLSICSLLT 111
YPFKPP + F TK++HPN++ NG ICL I+ + W P +VL ++ L+
Sbjct: 60 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVN 112
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 1 MASKRIIKELRDLQSDPPSSC-SAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPD 59
MAS R++KEL DLQ PP + + W A ++ P PY F++ I+FPP+
Sbjct: 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPE 62
Query: 60 YPFKPPKVAFKTKVFHPNINNNGSICLDIL-KDQWSPALTISKVLLSICSLLT 111
YPFKPP + F TK++HPN++ NG ICL I+ + W P +VL ++ L+
Sbjct: 63 YPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVN 115
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEG-LFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
+ K ++ EL+ LQ +P + EG L+ W+ + GP ++ Y GG F + FP DY
Sbjct: 8 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 67
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDIL-------------KDQWSPALTISKVLLSIC 107
P+ PP F TK++HPNI G +C+ IL ++W+P + +LLS+
Sbjct: 68 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 127
Query: 108 SLLT 111
SLL
Sbjct: 128 SLLN 131
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEG-LFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
+ K ++ EL+ LQ +P + EG L+ W+ + GP ++ Y GG F + FP DY
Sbjct: 5 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDY 64
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDIL-------------KDQWSPALTISKVLLSIC 107
P+ PP F TK++HPNI G +C+ IL ++W+P + +LLS+
Sbjct: 65 PYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI 124
Query: 108 SLLT 111
SLL
Sbjct: 125 SLLN 128
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 61/107 (57%)
Query: 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFK 63
KR+ +EL L SA P ++ LF+W T+ G + Y + +++ FP YP+
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 64 PPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLL 110
P V F T +HPN++ G+I LDILK++WS + +LLSI SLL
Sbjct: 93 APTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLL 139
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 71/114 (62%), Gaps = 7/114 (6%)
Query: 4 KRIIKELRDLQSDPPSSCSAGPI--AEG---LFRWQATVIGPTDSPYAGGIFHVAINFPP 58
+R+ +E + + D P A P+ A+G L +W+A + G + +AGG++ + + +P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 59 DYPFKPPKVAFKTKVFHPNINNNGSICLDIL-KDQ-WSPALTISKVLLSICSLL 110
+YP KPPKV F +HPN+ +G+ICL IL +DQ W PA+T+ +++L + LL
Sbjct: 67 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 71/114 (62%), Gaps = 7/114 (6%)
Query: 4 KRIIKELRDLQSDPPSSCSAGPI--AEG---LFRWQATVIGPTDSPYAGGIFHVAINFPP 58
+R+ +E + + D P A P+ A+G L +W+A + G + +AGG++ + + +P
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 59 DYPFKPPKVAFKTKVFHPNINNNGSICLDIL-KDQ-WSPALTISKVLLSICSLL 110
+YP KPPKV F +HPN+ +G+ICL IL +DQ W PA+T+ +++L + LL
Sbjct: 69 EYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 122
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAEG-----LFRWQATVIGPTDSPYAGGIFHVAIN 55
+ R+ +E + + D P A P L W+ + G + + GG++ + +
Sbjct: 10 LCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMA 69
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKDQ--WSPALTISKVLLSICSLLTXX 113
FP +YP +PPK F +FHPN+ +G++CL IL ++ W PA+TI ++LL I LL
Sbjct: 70 FPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDP 129
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E + K DK++YE R ++ A
Sbjct: 130 NIASPAQT--EAYTMFKKDKVEYEKRVRAQARENA 162
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAE-----GLFRWQATVIGPTDSPYAGGIFHVAIN 55
+A R+ +E + + D P A P L W+ + G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKD--QWSPALTISKVLLSICSLLTXX 113
F DYP PPK F+ +FHPN+ +G++CL IL++ W PA+TI ++LL I LL
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E + ++++YE R +K+A
Sbjct: 127 NIQAPAQA--EAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAE-----GLFRWQATVIGPTDSPYAGGIFHVAIN 55
+A R+ +E + + D P A P L W+ + G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKD--QWSPALTISKVLLSICSLLTXX 113
F DYP PPK F+ +FHPN+ +G++CL IL++ W PA+TI ++LL I LL
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E + ++++YE R +K+A
Sbjct: 127 NIQSPAQA--EAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAE-----GLFRWQATVIGPTDSPYAGGIFHVAIN 55
+A R+ +E + + D P A P L W+ + G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKD--QWSPALTISKVLLSICSLLTXX 113
F DYP PPK F+ +FHPN+ +G++CL IL++ W PA+TI ++LL I LL
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 123
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E + ++++YE R +K+A
Sbjct: 124 NIQDPAQA--EAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAE-----GLFRWQATVIGPTDSPYAGGIFHVAIN 55
+A R+ +E + + D P A P L W+ + G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKD--QWSPALTISKVLLSICSLLTXX 113
F DYP PPK F+ +FHPN+ +G++CL IL++ W PA+TI ++LL I LL
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E + ++++YE R +K+A
Sbjct: 127 NIQDPAQA--EAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAE-----GLFRWQATVIGPTDSPYAGGIFHVAIN 55
+A R+ +E + + D P A P L W+ + G +P+ GG+F + +
Sbjct: 6 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 65
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKD--QWSPALTISKVLLSICSLLTXX 113
F DYP PPK F+ +FHPN+ +G++CL IL++ W PA+TI ++LL I LL
Sbjct: 66 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 125
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E + ++++YE R +K+A
Sbjct: 126 NIQDPAQA--EAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
A+ RI KEL + ++PP +C+ + W +G ++ YA ++ + I FP DYP
Sbjct: 7 ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYP 66
Query: 62 FKPPKVAFKTK-VFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLT 111
KPP V F K H ++ +NG ICL +L D ++P+L+IS ++LSI S+L+
Sbjct: 67 LKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 117
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAE-----GLFRWQATVIGPTDSPYAGGIFHVAIN 55
+A R+ +E + + D P A P L W+ + G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKD--QWSPALTISKVLLSICSLLTXX 113
F DYP PPK F+ +FHPN+ +G++CL IL++ W PA+TI ++LL I LL
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E + ++++YE R +K+A
Sbjct: 127 NIQDPAQA--EAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAE-----GLFRWQATVIGPTDSPYAGGIFHVAIN 55
+A R+ +E + + D P A P L W+ + G +P+ GG+F + +
Sbjct: 6 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 65
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKD--QWSPALTISKVLLSICSLLTXX 113
F DYP PPK F+ +FHPN+ +G++CL IL++ W PA+TI ++LL I LL
Sbjct: 66 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 125
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E + ++++YE R +K+A
Sbjct: 126 NIQDPAQA--EAYTIYCQNRVEYEKRVRAQAKKFA 158
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAE-----GLFRWQATVIGPTDSPYAGGIFHVAIN 55
+A R+ +E + + D P A P L W+ + G +P+ GG+F + +
Sbjct: 5 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 64
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKD--QWSPALTISKVLLSICSLLTXX 113
F DYP PPK F+ +FHPN+ +G++CL IL++ W PA+TI ++LL I LL
Sbjct: 65 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 124
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E + ++++YE R +K+A
Sbjct: 125 NIQDPAQA--EAYTIYCQNRVEYEKRVRAQAKKFA 157
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAE-----GLFRWQATVIGPTDSPYAGGIFHVAIN 55
+A R+ +E + + D P A P L W+ + G +P+ GG+F + +
Sbjct: 9 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 68
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKD--QWSPALTISKVLLSICSLLTXX 113
F DYP PPK F+ +FHPN+ +G++CL IL++ W PA+TI ++LL I LL
Sbjct: 69 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 128
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E + ++++YE R +K+A
Sbjct: 129 NIQDPAQA--EAYTIYCQNRVEYEKRVRAQAKKFA 161
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
A+ RI KEL + +PP +C+ + W +G ++ YA ++ + I FP +YP
Sbjct: 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80
Query: 62 FKPPKVAFKTK-VFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLLT 111
KPP V F K H ++ +NG ICL +L D ++P+L+IS ++LSI S+L+
Sbjct: 81 LKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLS 131
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAE-----GLFRWQATVIGPTDSPYAGGIFHVAIN 55
+A R+ +E + + D P A P L W+ + G +P+ GG+F + +
Sbjct: 7 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 66
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKD--QWSPALTISKVLLSICSLLTXX 113
F DYP PPK F+ +FHP + +G++CL IL++ W PA+TI ++LL I LL
Sbjct: 67 FKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEP 126
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E + ++++YE R +K+A
Sbjct: 127 NIQDPAQA--EAYTIYCQNRVEYEKRVRAQAKKFA 159
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 1 MAS--KRIIKELRDLQSDPP--SSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINF 56
MAS KR+ KEL LQ+DPP + + + + +W + G + Y G F + F
Sbjct: 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 79
Query: 57 PPDYPFKPPKVAFKTKVF--HPNINNNGSICLDILKDQWSPALTISKVLLSICSLLT 111
YPF P+V F + HP++ +NG ICL IL + WSPAL++ V LSI S+L+
Sbjct: 80 SSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAE-----GLFRWQATVIGPTDSPYAGGIFHVAIN 55
+A R+ +E + + D P A P L W+ + G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKD--QWSPALTISKVLLSICSLLTXX 113
F DYP PPK F+ +FHPN+ +G++ L IL++ W PA+TI ++LL I LL
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLNEP 123
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E + ++++YE R +K+A
Sbjct: 124 NIQDPAQA--EAYTIYXQNRVEYEKRVRAQAKKFA 156
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAGPIAE-----GLFRWQATVIGPTDSPYAGGIFHVAIN 55
+A R+ +E + + D P A P L W+ + G +P+ GG+F + +
Sbjct: 4 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML 63
Query: 56 FPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKD--QWSPALTISKVLLSICSLLTXX 113
F DYP PPK F+ +FHPN+ +G++ L IL++ W PA+TI ++LL I LL
Sbjct: 64 FKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEP 123
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
E + ++++YE R +K+A
Sbjct: 124 NIQDPAQA--EAYTIYCQNRVEYEKRVRAQAKKFA 156
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAG-PIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPD 59
+ K ++KE+ +L+++ P +C P L +Q TV P + Y GG F P
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKFQFETEVPDA 72
Query: 60 YPFKPPKVAFKTKVFHPNINNNGSICLDILKDQ------WSPALTISKVLLSICSLLTXX 113
Y PPKV TK++HPNI G ICL +L++ W+P T+ V+ + SL T
Sbjct: 73 YNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDL 132
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
+ H + DK + N ++ ++YA
Sbjct: 133 LNFDDPLNIEAAEHHLR-DKEDFRNKVDDYIKRYA 166
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 9/155 (5%)
Query: 1 MASKRIIKELRDLQSDPPSSCSAG-PIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPD 59
+ K ++KE+ +L+++ P +C P L +Q TV P + Y GG F P
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVT-PDEGYYQGGKFQFETEVPDA 72
Query: 60 YPFKPPKVAFKTKVFHPNINNNGSICLDILKDQ------WSPALTISKVLLSICSLLTXX 113
Y PPKV TK++HPNI G ICL +L++ W+P T+ V+ + SL T
Sbjct: 73 YNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDL 132
Query: 114 XXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
+ H + DK + N ++ ++YA
Sbjct: 133 LNFDDPLNIEAAEHHLR-DKEDFRNKVDDYIKRYA 166
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 26 IAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINN-NGSI 84
I GL + GP +PY GG++ V ++ P YPFK P + F K+FHPNI+ +G++
Sbjct: 46 ILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTV 105
Query: 85 CLDILKDQWSPALTISKVLLSICSLL 110
CLD++ W+ ++ + S L
Sbjct: 106 CLDVINQTWTALYDLTNIFESFLPQL 131
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 15/121 (12%)
Query: 5 RIIKE----LRDLQSDPPSSC-------SAGPIAE-GLFRWQATVIGPTDSPYAGGIFHV 52
RI+KE L+ L SD P + S PI E L +W+A + GP+D+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 AINFPPDYPFKPPKVAF-KTKVFHPNINN-NGSICLDILK-DQWSPALTISKVLLSICSL 109
I P YP PPK++F + + H N+ + G ICL+ILK ++W+P + + ++ L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129
Query: 110 L 110
L
Sbjct: 130 L 130
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 39 GPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINN-NGSICLDILKDQWSPAL 97
GP + Y GGI+ V + P DYPF P + F K+ HPN++ +GS+CLD++ W+P
Sbjct: 37 GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLY 96
Query: 98 TISKVL-LSICSLLTXXXXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
++ V + + LLT L + A L DK YE + + + YA
Sbjct: 97 SLVNVFEVFLPQLLT--YPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYA 146
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 5/137 (3%)
Query: 8 KELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKV 67
++ DL+ + +A P++E + W+ + G +S + G +F + I+F +Y + PP V
Sbjct: 30 RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVV 89
Query: 68 AFKTKVFHPNIN-NNGSICLDILK--DQWSPALTISKVLLSICSLLTXXXXXXXXXLVPE 124
F T FHPN++ + G C+D L ++W+ T+S +LL++ +L+ L E
Sbjct: 90 KFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNL--E 147
Query: 125 IAHLCKTDKLKYENLAR 141
A + D+ Y + R
Sbjct: 148 AARILVKDESLYRTILR 164
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 68.9 bits (167), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 15/121 (12%)
Query: 5 RIIKE----LRDLQSDPPSSC-------SAGPIAE-GLFRWQATVIGPTDSPYAGGIFHV 52
RI+KE L+ L SD P + S PI E L +W+A + GP+D+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 AINFPPDYPFKPPKVAF-KTKVFHPNINN-NGSICLDILK-DQWSPALTISKVLLSICSL 109
I P YP PPK++F + + H N+ + G ICL+ILK ++W+P + + ++ L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129
Query: 110 L 110
L
Sbjct: 130 L 130
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 15/121 (12%)
Query: 5 RIIKE----LRDLQSDPPSSC-------SAGPIAE-GLFRWQATVIGPTDSPYAGGIFHV 52
RI+KE L+ L SD P + S PI E L +W+A + GP+D+PY F +
Sbjct: 10 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69
Query: 53 AINFPPDYPFKPPKVAF-KTKVFHPNINN-NGSICLDILK-DQWSPALTISKVLLSICSL 109
I P YP PPK++F + + H N+ + G ICL+ILK ++W+P + + ++ L
Sbjct: 70 LIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRL 129
Query: 110 L 110
L
Sbjct: 130 L 130
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 39 GPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINN-NGSICLDILKDQWSPAL 97
GP +PY G + + + P DYPFK P + F ++ HPN++ +GS+CLD++ W+P
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105
Query: 98 TISKVLLSICSLLTXXXXXXXXXLVPEIAHLCKTDKLKYENLARNWTQKYA 148
+ + L V + AHL D++ ++ L R +A
Sbjct: 106 QLENIFDVFLPQLLRYPNPSDPLNV-QAAHLLHADRVGFDALLREHVSTHA 155
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYP 61
A++R+ ++ ++ DP A P+ + W V GP +PY GG +H + FP ++P
Sbjct: 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 74
Query: 62 FKPPKVAFKTKVFHPN--INNNGSICLDILK---DQWSPALTISKVLLSICSLL 110
FKPP + T PN N +CL I D W+PA ++S +L + S +
Sbjct: 75 FKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFM 124
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 2 ASKRIIKELRDLQSDPPSSCSAG-PIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY 60
A RI K++ +L + P +C + L ++ VI P + Y G F + Y
Sbjct: 7 AQLRIQKDINEL--NLPKTCDISFSDPDDLLNFK-LVICPDEGFYKSGKFVFSFKVGQGY 63
Query: 61 PFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVLLSICSLL 110
P PPKV +T V+HPNI+ G++CL+IL++ W P LTI+ ++ + L
Sbjct: 64 PHDPPKVKCETXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLF 113
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 36 TVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSP 95
++ P + Y G + ++F YP +PPKV K+FHPNI+ G++CL+IL++ WSP
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 96 ALTISKVLLSICSLL 110
AL + ++ + L
Sbjct: 128 ALDLQSIITGLLFLF 142
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 13/87 (14%)
Query: 37 VIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTK-----VFHPNINNNGSICLDIL-- 89
+ GP D+PYA G F + FP DYP PP V +T F+PN+ N+G +CL IL
Sbjct: 116 ITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNT 175
Query: 90 -----KDQWSPAL-TISKVLLSICSLL 110
+++W+P + +VL+S+ SL+
Sbjct: 176 WHGRPEEKWNPQTSSFLQVLVSVQSLI 202
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 1 MASKRIIKELR----DLQSDPPSSCSAGPIAEGLF--------RWQATVIGPTDSPY--A 46
+++KRIIK+L+ ++ ++ ++ S P + +F W V P DS Y A
Sbjct: 8 ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGA 67
Query: 47 GGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPALTISKVL-LS 105
G + +++ F DYP +PP V F T V+ P + G IC ++ D W+P S V+ L
Sbjct: 68 GNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLV 127
Query: 106 ICSLLTXXXXXXXXXLVPEIAHLCK 130
+ + + + PE H +
Sbjct: 128 LDRVFSQYKSRRDDDVNPEARHYLE 152
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 37 VIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNNGSICLDILKDQWSPA 96
VI P + Y G F + YP PPKV +T V+HPNI+ G++ L+IL++ W P
Sbjct: 60 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPV 119
Query: 97 LTISKVLLSICSLL 110
LTI+ ++ + L
Sbjct: 120 LTINSIIYGLQYLF 133
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 5 RIIKELRDLQSD-PPSSCSAGPIAEG----LFRWQATVIGPTDSPYAGGIFHVAINFPPD 59
R+++EL + P SCS G +A+ + +W T++GP S + I+ ++I+ P+
Sbjct: 9 RLLEELEKGEKGFGPESCSYG-LADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPN 67
Query: 60 YPFKPPKVAFKTKVFHPNIN-NNGSICLDI--LKDQWSPALTISKVLLSI 106
YP PPKV F +K+ P +N G + D L+D W A T+ +LL +
Sbjct: 68 YPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD-WKRAYTMETLLLDL 116
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 5 RIIKELRDLQSD-PPSSCSAGPIAEG----LFRWQATVIGPTDSPYAGGIFHVAINFPPD 59
R+++EL + P SCS G +A+ + +W T++GP S + I+ ++I+ P+
Sbjct: 10 RLLEELEKGEKGFGPESCSYG-LADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPN 68
Query: 60 YPFKPPKVAFKTKVFHPNIN-NNGSICLDI--LKDQWSPALTISKVLLSI 106
YP PPKV F +K+ P +N G + D L+D W A T+ +LL +
Sbjct: 69 YPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD-WKRAYTMETLLLDL 117
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 2 ASKRIIKELRDL---QSDPPSSCSAGPIAEGLFRWQATV--IGPTDSPYAG--------- 47
AS R++KELRD+ QS S I + L+ W + + P DSP
Sbjct: 28 ASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDP-DSPLHSDLQILKEKE 86
Query: 48 GIFHVAINFP--PDYPFKPPKVAFKTKVFHPN-INNNGSICLDILKDQ-WSPALTISKVL 103
GI ++ +NF ++PF PP V V + G++C+++L Q WS A +I V+
Sbjct: 87 GIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVI 146
Query: 104 LSICSLLT 111
+ I + L
Sbjct: 147 MQINATLV 154
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 5 RIIKELRDLQSDPPSSCSAGPIAEGL--------FRWQATVIGPTDSPYAGGIFHVAINF 56
R+++EL + Q G ++ GL RW +IGP + Y I+ + +
Sbjct: 14 RLLEELEEGQK----GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVEC 69
Query: 57 PPDYPFKPPKVAFKTKVFHPNINNNGSIC----LDILKDQWSPALTISKVLLSICSLL 110
P YP PP V F TK+ INN+ + + +L +W + +I VL + L+
Sbjct: 70 GPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 126
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 5 RIIKELRDLQSDPPSSCSAGPIAEGL--------FRWQATVIGPTDSPYAGGIFHVAINF 56
R+++EL + Q G ++ GL RW +IGP + Y I+ + +
Sbjct: 9 RLLEELEEGQK----GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVEC 64
Query: 57 PPDYPFKPPKVAFKTKVFHPNINNNGSIC----LDILKDQWSPALTISKVLLSICSLL 110
P YP PP V F TK+ INN+ + + +L +W + +I VL + L+
Sbjct: 65 GPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 121
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 5 RIIKELRDLQSDPPSSCSAGPIAEGL--------FRWQATVIGPTDSPYAGGIFHVAINF 56
R+++EL + Q G ++ GL RW +IGP + Y I+ + +
Sbjct: 8 RLLEELEEGQK----GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVEC 63
Query: 57 PPDYPFKPPKVAFKTKVFHPNINNNGSIC----LDILKDQWSPALTISKVLLSICSLL 110
P YP PP V F TK+ INN+ + + +L +W + +I VL + L+
Sbjct: 64 GPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 120
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 5 RIIKELRDLQSDPPSSCSAGPIAEGL--------FRWQATVIGPTDSPYAGGIFHVAINF 56
R+++EL + Q G ++ GL RW +IGP + Y I+ + +
Sbjct: 19 RLLEELEEGQK----GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVEC 74
Query: 57 PPDYPFKPPKVAFKTKVFHPNINNNGSIC----LDILKDQWSPALTISKVLLSICSLL 110
P YP PP V F TK+ INN+ + + +L +W + +I VL + L+
Sbjct: 75 GPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLA-KWQNSYSIKVVLQELRRLM 131
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 30 LFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNNGSI----C 85
L RW +IGP + Y I+ + I P YP PP V F TK+ +N++ +
Sbjct: 68 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRA 127
Query: 86 LDILKDQWSPALTISKVLLSICSLL 110
+ +L +W + +I VL + L+
Sbjct: 128 ISVLA-KWQNSYSIKVVLQELRRLM 151
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 5 RIIKELRDLQSDPPSSCSAGPIAEGL--------FRWQATVIGPTDSPYAGGIFHVAINF 56
R+++EL + Q G ++ GL RW +IGP + Y I+ + I
Sbjct: 29 RLLEELEEGQK----GVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIEC 84
Query: 57 PPDYPFKPPKVAFKTKVFHPNINNNGSI----CLDILKDQWSPALTISKVLLSICSLL 110
P YP PP V F TK+ +N++ + + +L +W + +I VL + L+
Sbjct: 85 GPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 141
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 5 RIIKELRDLQSDPPSSCSAGPIAEGL--------FRWQATVIGPTDSPYAGGIFHVAINF 56
R+++EL + Q G ++ GL RW ++GP + Y I+ + I
Sbjct: 11 RLLEELEEGQK----GVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIEC 66
Query: 57 PPDYPFKPPKVAFKTKVFHPNINNNGSI----CLDILKDQWSPALTISKVLLSICSLL 110
P YP PP V F TK+ +N++ + + +L +W + +I VL + L+
Sbjct: 67 GPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLM 123
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 LFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNNGSIC---L 86
L W T+ G + + I+ + I +YP PP V F TK+ ++N G + L
Sbjct: 58 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNL 117
Query: 87 DILKDQWSPALTISKVLLSI 106
ILK+ W+ TI +L+S+
Sbjct: 118 HILKN-WNRNYTIETILISL 136
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 30 LFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNNGSIC---L 86
L W T+ G + + I+ + I +YP PP V F TK+ ++N G + L
Sbjct: 54 LSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNL 113
Query: 87 DILKDQWSPALTISKVLLSI 106
ILK+ W+ TI +L+S+
Sbjct: 114 HILKN-WNRNYTIETILISL 132
>pdb|3CP3|A Chain A, Crystal Structure Of Conserved Protein Of Unknown
Function Dip1874 From Corynebacterium Diphtheriae
Length = 148
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 54 INFPPDYPFKPPKVAFK----TKVFHPNINNNGSICLDILKDQ--WSPAL 97
+NF DY + P+V F+ TK+F N+N++ +D D WS L
Sbjct: 45 VNFVLDYSAEQPRVYFRTAEGTKLFSVNLNSDVLFEVDRFDDAEGWSVVL 94
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 17 PPSSCSAGPIAEGLFR-WQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTK 72
P S+C++G AE + R WQ V+G D+ GG+ I P F ++ T
Sbjct: 183 PVSACASG--AEAIARAWQQIVLGEADAAICGGV-ETRIEAVPIAGFAQMRIVMSTN 236
>pdb|3R3Q|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain
pdb|3R42|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain In Complex
With A Vps27 Psdp Peptide
Length = 162
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 57 PPDYPFKPPKVAFKTKVFHPN-----------INNNGSICLDILKDQWSP-ALTISKVLL 104
P YP KPP ++ + F N I++NG I L IL W P A+ + V+
Sbjct: 90 PSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQ 148
Query: 105 SICSLL 110
+ SLL
Sbjct: 149 ELMSLL 154
>pdb|1OLZ|A Chain A, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|1OLZ|B Chain B, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|3OL2|A Chain A, Receptor-Ligand Structure Of Human Semaphorin 4d With
Plexin B1
Length = 663
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 121 LVPEIAHLCKTDKLKYENLARNWT 144
L+P IA +CK D+ L + WT
Sbjct: 228 LIPRIARVCKGDQGGLRTLQKKWT 251
>pdb|3CJM|A Chain A, Crystal Structure Of Putative Beta-Lactamase (Np_815223.1)
From Enterococcus Faecalis V583 At 1.50 A Resolution
Length = 282
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 17 PPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFK 63
P + A +A G +W + + Y G +A N P+YP K
Sbjct: 82 PLTXLVADTVASGQKKWTDLIPYNAEEDYEEGTGIIAYNIQPEYPLK 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,676,355
Number of Sequences: 62578
Number of extensions: 174927
Number of successful extensions: 411
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 128
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)