Query 031951
Match_columns 150
No_of_seqs 152 out of 1134
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:36:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.4E-56 3E-61 312.4 15.5 148 1-150 1-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 5E-55 1.1E-59 310.6 17.1 146 2-149 6-152 (153)
3 PLN00172 ubiquitin conjugating 100.0 5.4E-52 1.2E-56 296.3 18.9 147 1-149 1-147 (147)
4 PTZ00390 ubiquitin-conjugating 100.0 1.4E-51 3.1E-56 295.4 19.1 147 2-150 3-149 (152)
5 KOG0419 Ubiquitin-protein liga 100.0 5.8E-52 1.3E-56 282.1 14.7 144 2-147 5-148 (152)
6 KOG0425 Ubiquitin-protein liga 100.0 6.6E-46 1.4E-50 259.3 15.9 143 3-147 7-163 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 9.4E-46 2E-50 255.1 15.1 147 2-150 5-158 (158)
8 cd00195 UBCc Ubiquitin-conjuga 100.0 1.6E-44 3.4E-49 256.3 16.2 139 4-144 2-141 (141)
9 PF00179 UQ_con: Ubiquitin-con 100.0 6.3E-45 1.4E-49 258.0 13.9 138 5-144 1-140 (140)
10 KOG0418 Ubiquitin-protein liga 100.0 8.2E-45 1.8E-49 260.7 14.4 147 2-150 4-154 (200)
11 KOG0426 Ubiquitin-protein liga 100.0 9.4E-45 2E-49 247.1 13.9 145 1-147 4-162 (165)
12 smart00212 UBCc Ubiquitin-conj 100.0 6.1E-44 1.3E-48 254.4 17.6 143 4-148 1-145 (145)
13 KOG0421 Ubiquitin-protein liga 100.0 4E-43 8.8E-48 242.2 11.8 142 3-147 31-172 (175)
14 KOG0422 Ubiquitin-protein liga 100.0 7.9E-41 1.7E-45 229.6 14.2 146 1-149 2-149 (153)
15 KOG0416 Ubiquitin-protein liga 100.0 2.3E-39 4.9E-44 229.2 11.3 144 2-150 4-149 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 5.1E-38 1.1E-42 222.8 11.8 145 2-149 29-175 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 8.5E-38 1.8E-42 221.9 8.0 146 3-150 12-157 (223)
18 KOG0427 Ubiquitin conjugating 100.0 6.2E-33 1.3E-37 189.0 11.9 111 2-113 16-127 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 1.3E-30 2.9E-35 191.0 15.0 116 2-119 6-124 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 1.4E-25 3.1E-30 165.1 13.4 142 4-146 22-167 (258)
21 KOG0428 Non-canonical ubiquiti 99.9 3.2E-23 6.8E-28 155.0 10.1 107 2-111 12-121 (314)
22 KOG0895 Ubiquitin-conjugating 99.8 1.4E-18 3.1E-23 151.0 8.8 117 4-120 854-979 (1101)
23 KOG0895 Ubiquitin-conjugating 99.7 4.9E-16 1.1E-20 135.4 11.3 111 3-113 284-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.6 1.8E-14 3.9E-19 99.0 8.1 109 4-112 8-123 (138)
25 KOG0897 Predicted ubiquitin-co 98.9 5.3E-09 1.2E-13 70.2 6.1 93 50-143 13-109 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.8 1.5E-08 3.3E-13 71.1 7.4 67 46-112 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.6 1.5E-07 3.2E-12 65.1 5.5 78 30-112 32-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.3 5.9E-07 1.3E-11 62.8 3.4 95 3-103 26-135 (161)
29 KOG2391 Vacuolar sorting prote 97.9 0.00013 2.8E-09 58.0 8.9 77 38-115 56-140 (365)
30 KOG3357 Uncharacterized conser 97.7 5.4E-05 1.2E-09 52.3 4.5 95 3-103 29-138 (167)
31 PF05773 RWD: RWD domain; Int 97.0 0.0026 5.7E-08 42.4 6.1 69 4-73 4-74 (113)
32 PF14462 Prok-E2_E: Prokaryoti 96.8 0.022 4.7E-07 39.4 8.9 89 20-111 13-120 (122)
33 smart00591 RWD domain in RING 96.5 0.019 4E-07 37.9 7.1 27 46-72 39-65 (107)
34 PF14457 Prok-E2_A: Prokaryoti 95.6 0.019 4.2E-07 41.6 4.1 62 51-112 56-126 (162)
35 PF09765 WD-3: WD-repeat regio 93.7 0.13 2.7E-06 40.8 4.6 85 4-111 102-187 (291)
36 KOG4018 Uncharacterized conser 88.0 1.4 2.9E-05 33.3 5.0 62 6-69 7-70 (215)
37 KOG0309 Conserved WD40 repeat- 80.2 9.6 0.00021 34.3 7.5 66 5-72 424-491 (1081)
38 TIGR03737 PRTRC_B PRTRC system 80.0 3.1 6.7E-05 31.9 4.0 39 71-113 131-173 (228)
39 PF14460 Prok-E2_D: Prokaryoti 79.1 2.7 5.9E-05 30.6 3.4 40 71-113 90-133 (175)
40 PF06113 BRE: Brain and reprod 77.4 6.9 0.00015 31.6 5.4 59 44-108 61-122 (333)
41 cd00421 intradiol_dioxygenase 60.5 14 0.00031 26.0 3.6 25 46-70 64-89 (146)
42 cd03457 intradiol_dioxygenase_ 56.3 18 0.00039 26.8 3.7 25 46-70 85-109 (188)
43 PF06113 BRE: Brain and reprod 55.9 27 0.0006 28.3 4.8 28 45-72 303-330 (333)
44 KOG0177 20S proteasome, regula 53.2 7.4 0.00016 28.9 1.1 31 81-111 135-165 (200)
45 PF09892 DUF2119: Uncharacteri 49.7 56 0.0012 24.4 5.3 79 63-148 105-191 (193)
46 cd03459 3,4-PCD Protocatechuat 49.6 28 0.0006 25.0 3.6 24 47-70 72-100 (158)
47 smart00340 HALZ homeobox assoc 47.3 17 0.00036 20.3 1.7 14 3-16 21-34 (44)
48 cd05845 Ig2_L1-CAM_like Second 45.3 53 0.0011 21.4 4.2 26 45-72 16-41 (95)
49 COG0544 Tig FKBP-type peptidyl 45.3 53 0.0011 27.7 5.2 14 50-63 211-224 (441)
50 cd07981 TAF12 TATA Binding Pro 44.0 70 0.0015 19.6 4.4 43 105-149 6-48 (72)
51 KOG3285 Spindle assembly check 43.8 44 0.00095 24.8 3.9 55 2-67 120-174 (203)
52 PF11333 DUF3135: Protein of u 40.6 50 0.0011 21.1 3.4 24 124-147 8-31 (83)
53 TIGR02423 protocat_alph protoc 39.9 44 0.00095 24.9 3.5 25 46-70 95-124 (193)
54 PF03847 TFIID_20kDa: Transcri 39.5 89 0.0019 19.1 4.3 43 105-149 4-46 (68)
55 KOG1047 Bifunctional leukotrie 38.7 31 0.00066 30.0 2.8 29 43-72 248-279 (613)
56 KOG4445 Uncharacterized conser 37.6 44 0.00095 26.9 3.3 25 48-72 45-69 (368)
57 cd03463 3,4-PCD_alpha Protocat 36.2 55 0.0012 24.2 3.5 23 48-70 93-120 (185)
58 PF00845 Gemini_BL1: Geminivir 35.2 87 0.0019 24.4 4.5 48 28-76 100-156 (276)
59 KOG0662 Cyclin-dependent kinas 35.0 38 0.00083 25.6 2.5 53 62-114 167-223 (292)
60 KOG4385 Predicted forkhead tra 34.9 48 0.001 28.4 3.3 59 81-144 348-413 (581)
61 PF03366 YEATS: YEATS family; 33.7 1.3E+02 0.0028 19.2 5.4 42 31-74 2-43 (84)
62 PF12018 DUF3508: Domain of un 33.1 61 0.0013 25.4 3.6 30 119-148 237-266 (281)
63 PF00779 BTK: BTK motif; Inte 30.7 19 0.00042 18.7 0.3 14 73-86 2-16 (32)
64 PF09280 XPC-binding: XPC-bind 28.5 89 0.0019 18.6 2.9 22 120-141 33-54 (59)
65 PF01175 Urocanase: Urocanase; 26.9 1.1E+02 0.0024 26.5 4.1 27 122-148 271-297 (546)
66 PF13950 Epimerase_Csub: UDP-g 25.3 69 0.0015 19.1 2.1 19 91-109 36-54 (62)
67 smart00803 TAF TATA box bindin 24.8 1.4E+02 0.0031 17.9 3.5 30 119-148 18-47 (65)
68 TIGR02439 catechol_proteo cate 24.6 1.1E+02 0.0023 24.3 3.6 25 46-70 179-221 (285)
69 TIGR01228 hutU urocanate hydra 24.4 1.2E+02 0.0026 26.2 4.0 27 122-148 272-298 (545)
70 PF14135 DUF4302: Domain of un 24.2 2.4E+02 0.0051 21.4 5.3 69 2-81 10-102 (235)
71 cd03464 3,4-PCD_beta Protocate 24.1 1.2E+02 0.0025 23.2 3.5 24 47-70 122-152 (220)
72 PRK05414 urocanate hydratase; 24.0 1.2E+02 0.0027 26.2 4.0 27 122-148 281-307 (556)
73 KOG0700 Protein phosphatase 2C 23.1 2.1E+02 0.0045 23.8 5.0 98 6-112 250-359 (390)
74 cd03461 1,2-HQD Hydroxyquinol 23.0 1.2E+02 0.0026 24.0 3.5 25 46-70 171-213 (277)
75 PF14455 Metal_CEHH: Predicted 22.1 2.4E+02 0.0053 20.4 4.6 65 4-72 8-76 (177)
76 PRK11700 hypothetical protein; 22.1 2.8E+02 0.006 20.7 5.1 53 47-105 109-184 (187)
77 COG3866 PelB Pectate lyase [Ca 22.0 1.6E+02 0.0034 23.9 4.0 38 32-70 198-239 (345)
78 TIGR02422 protocat_beta protoc 21.9 1.4E+02 0.0029 22.8 3.5 24 47-70 117-147 (220)
79 PF12065 DUF3545: Protein of u 21.6 67 0.0015 19.2 1.5 12 4-15 37-48 (59)
80 PF09606 Med15: ARC105 or Med1 21.4 31 0.00068 31.3 0.0 27 48-74 714-740 (799)
81 cd03460 1,2-CTD Catechol 1,2 d 21.3 1.4E+02 0.003 23.7 3.6 25 46-70 175-217 (282)
82 PF04314 DUF461: Protein of un 21.0 1.2E+02 0.0026 20.0 2.9 27 32-58 77-103 (110)
83 KOG1814 Predicted E3 ubiquitin 20.8 95 0.0021 26.1 2.6 20 51-70 77-97 (445)
84 TIGR02438 catachol_actin catec 20.5 1.5E+02 0.0032 23.5 3.6 25 46-70 183-225 (281)
85 PF02970 TBCA: Tubulin binding 20.3 82 0.0018 20.3 1.8 14 2-15 8-21 (90)
86 COG2819 Predicted hydrolase of 20.1 1.7E+02 0.0037 23.0 3.8 31 42-72 15-47 (264)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-56 Score=312.36 Aligned_cols=148 Identities=74% Similarity=1.333 Sum_probs=145.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeC
Q 031951 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINN 80 (150)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~ 80 (150)
||.+||.+|+++|++++++|+++.++++|+++|+++|.||.+||||||+|.+.|.||++||++||+|+|.|+||||||+.
T Consensus 1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~ 80 (148)
T KOG0417|consen 1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS 80 (148)
T ss_pred CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 031951 81 NGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKYAMG 150 (150)
Q Consensus 81 ~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (150)
+|.||+|+|.+.|+|+.++..||.+|++||.+||++ +|++.++|.+|+.|+++|.++||+|+++|||+
T Consensus 81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~Pnpd--dPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPD--DPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCC--ccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999 99999999999999999999999999999985
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-55 Score=310.56 Aligned_cols=146 Identities=57% Similarity=1.110 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCC-CceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeC
Q 031951 2 ASKRIIKELRDLQSDPPSSCSAGPIAE-GLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINN 80 (150)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~ 80 (150)
|.+||++|+++|+++++.++++.+.++ |+++|+++|.||++||||||.|++.|.||++||++||+|+|.++|||||||.
T Consensus 6 a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~ 85 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDP 85 (153)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCC
Confidence 678999999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 031951 81 NGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKYAM 149 (150)
Q Consensus 81 ~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 149 (150)
+|+||+++|.+.|+|+++|.+||.+|+++|.+||++ +|+|.|||++|++|+++|.++||+++++||.
T Consensus 86 ~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~--~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 86 SGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPD--SPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCC--CCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999 9999999999999999999999999999986
No 3
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=5.4e-52 Score=296.28 Aligned_cols=147 Identities=73% Similarity=1.290 Sum_probs=144.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeC
Q 031951 1 MASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINN 80 (150)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~ 80 (150)
||.+||++|+++|++++++++.+.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+.
T Consensus 1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~ 80 (147)
T PLN00172 1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS 80 (147)
T ss_pred ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 031951 81 NGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKYAM 149 (150)
Q Consensus 81 ~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 149 (150)
+|.||++++.++|+|++++.+||.+|+++|.+|+++ +|+|.+||++|++|+++|.++|++|+++||.
T Consensus 81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~--~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPD--DPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999 9999999999999999999999999999983
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.4e-51 Score=295.36 Aligned_cols=147 Identities=48% Similarity=0.867 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeCC
Q 031951 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNN 81 (150)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~~ 81 (150)
++|||++|+++|+++++.|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 031951 82 GSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKYAMG 150 (150)
Q Consensus 82 G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (150)
|.||+++|.++|+|++|+.+||.+|+++|.+|+++ +|+|.+||++|++|+++|.++|++|+++||++
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~--~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPD--DPLDTSVADHFKNNRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999 99999999999999999999999999999963
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-52 Score=282.06 Aligned_cols=144 Identities=42% Similarity=0.897 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeCC
Q 031951 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNN 81 (150)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~~ 81 (150)
|-|||++|+++|+++++.|++..|.++|++.|++.|+||.+|||+||+|++.|+|+++||.+||.|+|++..||||||.+
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~ 84 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYAD 84 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHh
Q 031951 82 GSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKY 147 (150)
Q Consensus 82 G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~ 147 (150)
|.+|+|+|...|+|+|++.+||.+||+||.+||++ +|+|.+||++|.+|+.+|.+++++.+.+.
T Consensus 85 G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~--sPaN~eAA~Lf~e~~rey~rrVk~~veqs 148 (152)
T KOG0419|consen 85 GSICLDILQNRWSPTYDVASILTSIQSLLNDPNPN--SPANSEAARLFSENKREYERRVKETVEQS 148 (152)
T ss_pred CcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCC--CcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 99999999999999999999999998764
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-46 Score=259.29 Aligned_cols=143 Identities=34% Similarity=0.798 Sum_probs=136.7
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCC-CceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeCC
Q 031951 3 SKRIIKELRDLQSDPPSSCSAGPIAE-GLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNN 81 (150)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~~ 81 (150)
..-|++++++|++++.+|+.+...++ |+++|.|.|.||++|.|+||.|+..+.||.+||.+||+++|+|++||||||++
T Consensus 7 ~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~ 86 (171)
T KOG0425|consen 7 SLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYED 86 (171)
T ss_pred HHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCC
Confidence 45689999999999999999988775 99999999999999999999999999999999999999999999999999999
Q ss_pred CceeccCCC-------------CCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHh
Q 031951 82 GSICLDILK-------------DQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKY 147 (150)
Q Consensus 82 G~vcl~~l~-------------~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~ 147 (150)
|.+|+++|. +.|+|..|+++||++|.+||.+||.+ +|+|.+||+.|++|+++|+++++++|++-
T Consensus 87 G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~--SPANVDAa~~~Ren~~EykkkV~r~vr~s 163 (171)
T KOG0425|consen 87 GDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDE--SPANVDAAKEWRENPEEYKKKVRRCVRRS 163 (171)
T ss_pred CCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCC--CccchHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 999999993 57999999999999999999999999 99999999999999999999999999864
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-46 Score=255.11 Aligned_cols=147 Identities=36% Similarity=0.752 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecC-----CCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccc
Q 031951 2 ASKRIIKELRDLQSDPPSSCSAGPIA-----EGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHP 76 (150)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HP 76 (150)
|+.||+.|-+.+.++.+-|+++.|.. .|++.|.+.|.|+.||+||||.|.+++.||++||.+||+++|.+++|||
T Consensus 5 ~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HP 84 (158)
T KOG0424|consen 5 ALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHP 84 (158)
T ss_pred HHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCC
Confidence 67899999999999999999999976 4789999999999999999999999999999999999999999999999
Q ss_pred eeeCCCceeccCCCCC--CCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 031951 77 NINNNGSICLDILKDQ--WSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKYAMG 150 (150)
Q Consensus 77 nv~~~G~vcl~~l~~~--W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (150)
|||++|.|||++|.+. |+|+.||.+||.+|++||.+||+. +|+|.||...|.+|+.+|.++||.++++||.+
T Consensus 85 NVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~--~pAq~eA~~~~~~~r~eYekrvr~qak~~a~~ 158 (158)
T KOG0424|consen 85 NVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNIT--SPAQTEAYTIYCQDRAEYEKRVRAQAKEYAKA 158 (158)
T ss_pred CcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCC--CchhhHHHHHHhhCHHHHHHHHHHHHHHhccC
Confidence 9999999999999754 999999999999999999999999 99999999999999999999999999999964
No 8
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.6e-44 Score=256.34 Aligned_cols=139 Identities=57% Similarity=1.089 Sum_probs=135.3
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeCCCc
Q 031951 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNNGS 83 (150)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~~G~ 83 (150)
|||++|+++++++++.|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCC-CCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHH
Q 031951 84 ICLDILKDQ-WSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWT 144 (150)
Q Consensus 84 vcl~~l~~~-W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 144 (150)
||++++... |+|++++.+||.+|+++|.+|+.+ +++|.+||++|++|+++|.++|++|+
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~--~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPS--DPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCC--CchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999876 999999999999999999999888 99999999999999999999999974
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=6.3e-45 Score=258.04 Aligned_cols=138 Identities=55% Similarity=1.086 Sum_probs=128.4
Q ss_pred HHHHHHHHhhcCCCCCeeEeecCC-CceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeCCCc
Q 031951 5 RIIKELRDLQSDPPSSCSAGPIAE-GLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNNGS 83 (150)
Q Consensus 5 Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~~G~ 83 (150)
||++|+++++++++.|+.+.+.++ |+.+|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+++||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999986 9999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC-CCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHH
Q 031951 84 ICLDILKD-QWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWT 144 (150)
Q Consensus 84 vcl~~l~~-~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 144 (150)
||++++.. .|+|++++.+||.+|+++|.+|+.+ +++|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~--~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPE--DPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTT--STSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCC--CcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 99999974 5999999999999999999999888 99999999999999999999999984
No 10
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-45 Score=260.72 Aligned_cols=147 Identities=42% Similarity=0.804 Sum_probs=142.7
Q ss_pred hHHHHHHHHHHhhcCC---CCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEeccccccee
Q 031951 2 ASKRIIKELRDLQSDP---PSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNI 78 (150)
Q Consensus 2 a~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv 78 (150)
+.+||++|++++.+++ ..|+.+...++|+.+..+.|.||++||||||+|.+.|++|++||++||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 5799999999999988 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred e-CCCceeccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 031951 79 N-NNGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKYAMG 150 (150)
Q Consensus 79 ~-~~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (150)
. .+|.||+|++.+.|++++|+..+|.+||++|..|++. +|.....|+.|.+|++.|.+.||.|+..||++
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~--dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPK--DPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCC--ChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 9 5999999999999999999999999999999999999 99999999999999999999999999999975
No 11
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-45 Score=247.07 Aligned_cols=145 Identities=36% Similarity=0.833 Sum_probs=139.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCeeEeecC-CCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceee
Q 031951 1 MASKRIIKELRDLQSDPPSSCSAGPIA-EGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNIN 79 (150)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~~~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~ 79 (150)
+|+|||++||++|..++++|+.+.|.+ +|+++|.+.|.||++|+|+||+|..++.||.+||.+||+++|...+||||||
T Consensus 4 ~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy 83 (165)
T KOG0426|consen 4 TALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIY 83 (165)
T ss_pred hHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCccc
Confidence 489999999999999999999999875 7899999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccCCC-------------CCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHH
Q 031951 80 NNGSICLDILK-------------DQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQK 146 (150)
Q Consensus 80 ~~G~vcl~~l~-------------~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~ 146 (150)
++|+||+++|. +.|+|.++++.||.++.+||.+||-+ +.+|.+|+.++++|+++|.+.|+..++|
T Consensus 84 ~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdE--SgANvdA~~mWRe~R~ef~~i~~~lvrK 161 (165)
T KOG0426|consen 84 PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDE--SGANVDACKMWREDREEFEKIAKRLVRK 161 (165)
T ss_pred CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcc--cCcccHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999983 57999999999999999999999999 9999999999999999999999999987
Q ss_pred h
Q 031951 147 Y 147 (150)
Q Consensus 147 ~ 147 (150)
.
T Consensus 162 t 162 (165)
T KOG0426|consen 162 T 162 (165)
T ss_pred h
Confidence 5
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=6.1e-44 Score=254.38 Aligned_cols=143 Identities=56% Similarity=1.109 Sum_probs=138.7
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCC-CceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeCCC
Q 031951 4 KRIIKELRDLQSDPPSSCSAGPIAE-GLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNNG 82 (150)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~~G 82 (150)
+||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999999999999998876 999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCC-CCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 031951 83 SICLDILK-DQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKYA 148 (150)
Q Consensus 83 ~vcl~~l~-~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a 148 (150)
.||++++. ++|+|++++.++|.+|+++|.+|+.+ +++|.+||++|++|++.|+++|++++++++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~--~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPD--SPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999988 999999999999999999999999999985
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-43 Score=242.16 Aligned_cols=142 Identities=40% Similarity=0.764 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeCCC
Q 031951 3 SKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNNG 82 (150)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~~G 82 (150)
.|||++|+..|+....+|+++.|..+|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|+.||||||..|
T Consensus 31 ~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~G 110 (175)
T KOG0421|consen 31 TKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSG 110 (175)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHh
Q 031951 83 SICLDILKDQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKY 147 (150)
Q Consensus 83 ~vcl~~l~~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~ 147 (150)
.||+|+|.+.|+..|+++.||.+||+||-+||.+ +|+|..||+++. |.++|++.+.++-++.
T Consensus 111 nIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~--SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 111 NICLDILKDKWSAVYDVRTILLSIQSLLGEPNNS--SPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCC--CcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999 999999999998 9999999998876653
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-41 Score=229.64 Aligned_cols=146 Identities=38% Similarity=0.775 Sum_probs=137.4
Q ss_pred ChHHHHHHHHHHhhcCCCCCee-EeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceee
Q 031951 1 MASKRIIKELRDLQSDPPSSCS-AGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNIN 79 (150)
Q Consensus 1 ~a~~Rl~~E~~~l~~~~~~~~~-~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~ 79 (150)
+|.+||.+|+.+|+++....+. +...++|+..|.+.|. |++.||..|.|+++|.||.+|||+||+|+|.|.|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 4789999999999998876443 4556689999999999 9999999999999999999999999999999999999999
Q ss_pred CCCceeccCC-CCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 031951 80 NNGSICLDIL-KDQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKYAM 149 (150)
Q Consensus 80 ~~G~vcl~~l-~~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 149 (150)
+.|.+|+.++ .++|.|++...+||+.|..++.+|+++ .|++.++|..|..|++.|.++|.++++||+.
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe--~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPE--HPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCcc--ccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 9999999988 599999999999999999999999999 9999999999999999999999999999985
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-39 Score=229.22 Aligned_cols=144 Identities=36% Similarity=0.744 Sum_probs=133.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceee-C
Q 031951 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNIN-N 80 (150)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~-~ 80 (150)
+-||+..|..+|.... ..+...++++.+++|.+.||.+|||+||+++++|.+|++||++.|+|.|+++||||||+ .
T Consensus 4 ~~rRid~Dv~KL~~s~---yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMSD---YEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred cccchhhHHHHHHhcC---CeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 4589999999987643 44677778899999999999999999999999999999999999999999999999999 5
Q ss_pred CCceeccCCCCCCCCCCCHHHHHHHHH-HhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 031951 81 NGSICLDILKDQWSPALTISKVLLSIC-SLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKYAMG 150 (150)
Q Consensus 81 ~G~vcl~~l~~~W~p~~~~~~il~~i~-~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (150)
+|.|||+.++..|+|.+.+..|+.... .||..||+. +|+|.+||.+|.++++.|.+++|++++|||++
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~--DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPS--DPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCC--CCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 999999999999999999999997654 799999999 99999999999999999999999999999974
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-38 Score=222.75 Aligned_cols=145 Identities=34% Similarity=0.652 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCce--eEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceee
Q 031951 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLF--RWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNIN 79 (150)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~--~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~ 79 (150)
|+-||++|..+++--+....++....+++. +..++|. |+++.|+||.|.|.+++|+.||++||+|+|+|+||||||+
T Consensus 29 a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId 107 (184)
T KOG0420|consen 29 ALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNID 107 (184)
T ss_pred HHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcC
Confidence 566777777777543332222222234444 5899998 9999999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 031951 80 NNGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKYAM 149 (150)
Q Consensus 80 ~~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 149 (150)
.+|.||+++|+++|+|+.++.+|+.+|+.+|.+|+++ +|+|.+||+++++|++.|..+||.....++-
T Consensus 108 ~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~e--DpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 108 LDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPE--DPLNKEAAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred CcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCc--ccccHHHHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999 9999999999999999999999998877653
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-38 Score=221.88 Aligned_cols=146 Identities=38% Similarity=0.679 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeCCC
Q 031951 3 SKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNNG 82 (150)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~~G 82 (150)
+|.|.+|++.+...|+.|+.+.+.++|+....+.|.||.||||++|.|++++.+..+||.+||+-.|+|+||||||-.||
T Consensus 12 ik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG 91 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG 91 (223)
T ss_pred HHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Q 031951 83 SICLDILKDQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKYAMG 150 (150)
Q Consensus 83 ~vcl~~l~~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (150)
.||.+.|..+|+|..++..||..|+++|..|+|+ +.+|.+|++++.+|.++|.++||.++.-+|++
T Consensus 92 EICVNtLKkDW~p~LGirHvLltikCLLI~PnPE--SALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 92 EICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPE--SALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred eehhhhhhcccCcccchhhHhhhhheeeecCChH--HHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999 99999999999999999999999999988864
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-33 Score=188.97 Aligned_cols=111 Identities=39% Similarity=0.795 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEeccc-ccceeeC
Q 031951 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKV-FHPNINN 80 (150)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i-~HPnv~~ 80 (150)
|.+||++|+.++|.+++.|+... +.+|+.+|.+-+.|.+||.|+|.+|.++++||+.||++.|.|.|..++ .||+||+
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYS 94 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYS 94 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceec
Confidence 78999999999999999999887 779999999999999999999999999999999999999999999886 7999999
Q ss_pred CCceeccCCCCCCCCCCCHHHHHHHHHHhhcCC
Q 031951 81 NGSICLDILKDQWSPALTISKVLLSICSLLTDP 113 (150)
Q Consensus 81 ~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~~ 113 (150)
||.|||++|.++|+|++++.+|..+|.+||.+-
T Consensus 95 NGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs 127 (161)
T KOG0427|consen 95 NGHICLDILYDSWSPAMSVQSVCLSILSMLSSS 127 (161)
T ss_pred CCeEEEEeecccCCcchhhHHHHHHHHHHHccC
Confidence 999999999999999999999999999999765
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=191.02 Aligned_cols=116 Identities=36% Similarity=0.766 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeCC
Q 031951 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNN 81 (150)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~~ 81 (150)
|.|||++||+.|+++|.+++.+.|..+|+.+||.+|.||++|||+||.|+.+|.||.+||++||.|+++|+ +..+-.+
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP--NGRFktn 83 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP--NGRFKTN 83 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC--CCceecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998 5566677
Q ss_pred CceeccCC---CCCCCCCCCHHHHHHHHHHhhcCCCCCCCC
Q 031951 82 GSICLDIL---KDQWSPALTISKVLLSICSLLTDPNPDDDD 119 (150)
Q Consensus 82 G~vcl~~l---~~~W~p~~~~~~il~~i~~ll~~~~~~~~~ 119 (150)
-++||++. .+.|+|+++|.+||.+|.++|.+..+...+
T Consensus 84 tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGS 124 (244)
T KOG0894|consen 84 TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGS 124 (244)
T ss_pred ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCc
Confidence 89999876 499999999999999999999887775433
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-25 Score=165.06 Aligned_cols=142 Identities=23% Similarity=0.391 Sum_probs=129.7
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCC--CCCeeEEecccccceeeC-
Q 031951 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPF--KPPKVAFKTKVFHPNINN- 80 (150)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~--~pP~i~f~t~i~HPnv~~- 80 (150)
..|+.|+..+.+.+.+|+++.|+-.|-+.|.++|+ ...|.|.||+|+|+|.+|++||. ..|+|.|.++++||+|.+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViF-vr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIF-VRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEE-EecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 35788999999999999999999999999999999 56778999999999999999995 789999999999999995
Q ss_pred CCceeccCCCCCCCCCC-CHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHH
Q 031951 81 NGSICLDILKDQWSPAL-TISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQK 146 (150)
Q Consensus 81 ~G~vcl~~l~~~W~p~~-~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~ 146 (150)
++.+|++.....|...- +++++|..++..|++|+...+.-.|+||+.+|++++++|.++|+++++.
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~ 167 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKA 167 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHH
Confidence 89999998877798775 8999999999999999877444569999999999999999999999874
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.2e-23 Score=155.02 Aligned_cols=107 Identities=37% Similarity=0.804 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeCC
Q 031951 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNN 81 (150)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~~ 81 (150)
|.|||++|.++|+ +|...+-..|.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+ +..+.-+
T Consensus 12 aVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp--NGRFE~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP--NGRFEVN 88 (314)
T ss_pred HHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC--CCceeeC
Confidence 6899999999999 777777889999999999999999999999999999999999999999999999988 5666678
Q ss_pred CceeccCC---CCCCCCCCCHHHHHHHHHHhhc
Q 031951 82 GSICLDIL---KDQWSPALTISKVLLSICSLLT 111 (150)
Q Consensus 82 G~vcl~~l---~~~W~p~~~~~~il~~i~~ll~ 111 (150)
-+|||++. .+.|-|+++|...|..|..+|-
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmP 121 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLALIGFMP 121 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHHHcccc
Confidence 89999887 4899999999999999998884
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.4e-18 Score=151.00 Aligned_cols=117 Identities=29% Similarity=0.631 Sum_probs=105.4
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecc--cccceeeCC
Q 031951 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTK--VFHPNINNN 81 (150)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~--i~HPnv~~~ 81 (150)
+..+.|++-|..+.+.|+++...++.+....+.|.|+.||||..|.|.|.+.||++||.+||.+...+. .++||.|.+
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~ 933 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYED 933 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccc
Confidence 456778888888899999999999988889999999999999999999999999999999999999875 589999999
Q ss_pred CceeccCCC-------CCCCCCCCHHHHHHHHHHhhcCCCCCCCCC
Q 031951 82 GSICLDILK-------DQWSPALTISKVLLSICSLLTDPNPDDDDP 120 (150)
Q Consensus 82 G~vcl~~l~-------~~W~p~~~~~~il~~i~~ll~~~~~~~~~~ 120 (150)
|+||+++|. +-|+|+.++.++|.+||.|+.+..|..+.+
T Consensus 934 g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~ne~ 979 (1101)
T KOG0895|consen 934 GKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFNEA 979 (1101)
T ss_pred cceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccCcc
Confidence 999999995 679999999999999999988776654443
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.9e-16 Score=135.42 Aligned_cols=111 Identities=37% Similarity=0.701 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecc---cccceee
Q 031951 3 SKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTK---VFHPNIN 79 (150)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~---i~HPnv~ 79 (150)
.+|+++|++-+.++.+.|+.+.+.+..+....+.|.||.||||++|.|.|.|.||..||..||.+++.+. .+.||.|
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY 363 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY 363 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999876 6899999
Q ss_pred CCCceeccCCC-------CCCCCC-CCHHHHHHHHHHhhcCC
Q 031951 80 NNGSICLDILK-------DQWSPA-LTISKVLLSICSLLTDP 113 (150)
Q Consensus 80 ~~G~vcl~~l~-------~~W~p~-~~~~~il~~i~~ll~~~ 113 (150)
.+|+||+++|- +.|+|. .++.++|.+|+.++.+.
T Consensus 364 n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 364 NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred cCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 99999999883 789999 79999999999998765
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.8e-14 Score=99.04 Aligned_cols=109 Identities=28% Similarity=0.476 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhcCCCCCee-Eee-cCCC--ceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceee
Q 031951 4 KRIIKELRDLQSDPPSSCS-AGP-IAEG--LFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNIN 79 (150)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~-~~~-~~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~ 79 (150)
-||.+|+.+-++--.++.. ... +.+| +..|..+|.||+.|+||+.+|+++|....+||..||+++|.+++--+-|+
T Consensus 8 frlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn 87 (138)
T KOG0896|consen 8 FRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVN 87 (138)
T ss_pred hhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccc
Confidence 4788888887764433332 222 2234 46899999999999999999999999999999999999999999888887
Q ss_pred -CCCceeccCC--CCCCCCCCCHHHHHHHHHHhhcC
Q 031951 80 -NNGSICLDIL--KDQWSPALTISKVLLSICSLLTD 112 (150)
Q Consensus 80 -~~G~vcl~~l--~~~W~p~~~~~~il~~i~~ll~~ 112 (150)
.+|.|.-..+ -.+|...+++..+|..++.++..
T Consensus 88 ~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 88 SSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred cCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence 5777776433 38999999999999999976543
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5.3e-09 Score=70.24 Aligned_cols=93 Identities=19% Similarity=0.394 Sum_probs=69.3
Q ss_pred EEEEEeCCCCCCCCCCeeEEeccccc-ceeeCCCceeccCCC-CCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHH
Q 031951 50 FHVAINFPPDYPFKPPKVAFKTKVFH-PNINNNGSICLDILK-DQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAH 127 (150)
Q Consensus 50 f~~~i~fp~~YP~~pP~i~f~t~i~H-Pnv~~~G~vcl~~l~-~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~ 127 (150)
.-+.+.|+++||+.||.++...++.. .-|-.+|.||+.++. ++|+.+++|+.++++|..++......-..+++.+..
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk- 91 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK- 91 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-
Confidence 45778899999999999998876543 344578999999994 899999999999999999998876543366655543
Q ss_pred HH--HHCHHHHHHHHHHH
Q 031951 128 LC--KTDKLKYENLARNW 143 (150)
Q Consensus 128 ~~--~~~~~~f~~~~~~~ 143 (150)
+| ..--+.|+..++..
T Consensus 92 ~~s~~qa~~sfksLv~~h 109 (122)
T KOG0897|consen 92 LYSHSQAQQSFKSLVQIH 109 (122)
T ss_pred HhhHHHHHHHHHHHHHHH
Confidence 23 22444566655544
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.84 E-value=1.5e-08 Score=71.14 Aligned_cols=67 Identities=33% Similarity=0.787 Sum_probs=61.0
Q ss_pred CCcEEEEEEeCCCCCCCCCCeeEEeccc---ccceeeCCCceec---cCCCCCCCCCCCHHHHHHHHHHhhcC
Q 031951 46 AGGIFHVAINFPPDYPFKPPKVAFKTKV---FHPNINNNGSICL---DILKDQWSPALTISKVLLSICSLLTD 112 (150)
Q Consensus 46 ~gg~f~~~i~fp~~YP~~pP~i~f~t~i---~HPnv~~~G~vcl---~~l~~~W~p~~~~~~il~~i~~ll~~ 112 (150)
.|+.+.+.|.||++||..||.|....+. +-|||+.+|.+|+ +..-+.|.|.-.+.++|..+..+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999888654 6899999999999 77779999999999999999999974
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.56 E-value=1.5e-07 Score=65.14 Aligned_cols=78 Identities=22% Similarity=0.564 Sum_probs=54.6
Q ss_pred ceeEEEEEECCCCCCCCCcEE--EEEEeCCCCCCCCCCeeEEeccc-----ccceeeCCCceeccCCCCCCCC-CCCHHH
Q 031951 30 LFRWQATVIGPTDSPYAGGIF--HVAINFPPDYPFKPPKVAFKTKV-----FHPNINNNGSICLDILKDQWSP-ALTISK 101 (150)
Q Consensus 30 ~~~w~~~i~gp~~t~y~gg~f--~~~i~fp~~YP~~pP~i~f~t~i-----~HPnv~~~G~vcl~~l~~~W~p-~~~~~~ 101 (150)
+....++|. -.|+|..| .+.|-+|.+||.+||.+...... -+.+|+.+|+|.+..+ ++|++ ..++.+
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL-~~W~~~~s~L~~ 106 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYL-QNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHH-HT--TTTS-HHH
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchh-ccCCCCCCCHHH
Confidence 445555554 35888887 56778999999999999775332 2449999999998887 77988 679999
Q ss_pred HHHHHHHhhcC
Q 031951 102 VLLSICSLLTD 112 (150)
Q Consensus 102 il~~i~~ll~~ 112 (150)
++..+...|..
T Consensus 107 lv~~l~~~F~~ 117 (121)
T PF05743_consen 107 LVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHCCCH
T ss_pred HHHHHHHHHhH
Confidence 99999988854
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.31 E-value=5.9e-07 Score=62.81 Aligned_cols=95 Identities=21% Similarity=0.369 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcE----------EEEEEeCCCCCCCCCCeeEEecc
Q 031951 3 SKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGI----------FHVAINFPPDYPFKPPKVAFKTK 72 (150)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~fp~~YP~~pP~i~f~t~ 72 (150)
..||..||+.|-+ ++...+++-..|.-.=.-++||-|.|.+ |.+++.+|..||..||.|..-.-
T Consensus 26 ~~RLKEEy~aLI~------Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeL 99 (161)
T PF08694_consen 26 VQRLKEEYQALIK------YVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPEL 99 (161)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGG
T ss_pred HHHHHHHHHHHHH------HHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceecccc
Confidence 4799999998755 2222222222332222335555555544 66777899999999999976421
Q ss_pred -cccceeeCCCceeccCCC-CCC---CCCCCHHHHH
Q 031951 73 -VFHPNINNNGSICLDILK-DQW---SPALTISKVL 103 (150)
Q Consensus 73 -i~HPnv~~~G~vcl~~l~-~~W---~p~~~~~~il 103 (150)
--..-.|.+|+||++... .-| .|.++|...+
T Consensus 100 dGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 100 DGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp TTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred CCchhhhhcCceEeeecccchhhhhcCCchhHHHHH
Confidence 124566789999998764 445 5777887765
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.00013 Score=57.96 Aligned_cols=77 Identities=23% Similarity=0.548 Sum_probs=60.5
Q ss_pred ECCCCCCCCCcEEE--EEEeCCCCCCCCCCeeEEecc-----cccceeeCCCceeccCCCCCCCC-CCCHHHHHHHHHHh
Q 031951 38 IGPTDSPYAGGIFH--VAINFPPDYPFKPPKVAFKTK-----VFHPNINNNGSICLDILKDQWSP-ALTISKVLLSICSL 109 (150)
Q Consensus 38 ~gp~~t~y~gg~f~--~~i~fp~~YP~~pP~i~f~t~-----i~HPnv~~~G~vcl~~l~~~W~p-~~~~~~il~~i~~l 109 (150)
.|---.+|.|.+|. +.|-+.+.||..||.+..... --|-+|+++|.|.|.+| .+|.+ +.++..+++.+...
T Consensus 56 ~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a~ 134 (365)
T KOG2391|consen 56 DGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIAA 134 (365)
T ss_pred cCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhh-ccCCCccchHHHHHHHHHHH
Confidence 34334678888876 566799999999999866422 13899999999999998 67985 56899999999999
Q ss_pred hcCCCC
Q 031951 110 LTDPNP 115 (150)
Q Consensus 110 l~~~~~ 115 (150)
|.++.+
T Consensus 135 f~~~pP 140 (365)
T KOG2391|consen 135 FSEDPP 140 (365)
T ss_pred hcCCCc
Confidence 887654
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=5.4e-05 Score=52.32 Aligned_cols=95 Identities=21% Similarity=0.411 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcE----------EEEEEeCCCCCCCCCCeeEEecc
Q 031951 3 SKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGI----------FHVAINFPPDYPFKPPKVAFKTK 72 (150)
Q Consensus 3 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~fp~~YP~~pP~i~f~t~ 72 (150)
.+||..||+.|-. +++..+++-..|.-.-..++||-|-|.+ |.+++.+|-.||..+|.|....-
T Consensus 29 vqrlkeey~sli~------yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpel 102 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA------YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPEL 102 (167)
T ss_pred HHHHHHHHHHHHH------HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccccc
Confidence 4799999998865 2222333333444333558888888865 66777789999999999864211
Q ss_pred -cccceeeCCCceecc-CCCCCCC---CCCCHHHHH
Q 031951 73 -VFHPNINNNGSICLD-ILKDQWS---PALTISKVL 103 (150)
Q Consensus 73 -i~HPnv~~~G~vcl~-~l~~~W~---p~~~~~~il 103 (150)
--.--.|.+|.||+. .+..-|. |.+++...+
T Consensus 103 dgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 103 DGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred CchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 012345568999995 4456674 555665543
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=97.03 E-value=0.0026 Score=42.36 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEEC--CCCCCCCCcEEEEEEeCCCCCCCCCCeeEEeccc
Q 031951 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIG--PTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKV 73 (150)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i 73 (150)
.+...|+..|+.--+... ......+...+.+.+.+ ...+.-....+.+.++||++||..+|.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 467788888887555444 22334455566777732 3344555678999999999999999999877653
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.75 E-value=0.022 Score=39.36 Aligned_cols=89 Identities=20% Similarity=0.416 Sum_probs=59.6
Q ss_pred CeeEeecCCCceeEEEEEEC--CCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeCCCce--eccCC------
Q 031951 20 SCSAGPIAEGLFRWQATVIG--PTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNNGSI--CLDIL------ 89 (150)
Q Consensus 20 ~~~~~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~~G~v--cl~~l------ 89 (150)
|+..+...+.-..|.+ |.| .+.+.|.+..-.+-|.+|..||..+|-+-+..+-.... .+|.+ |-+..
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~ 89 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGR 89 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCe
Confidence 4455555566666655 555 55677999999999999999999998776654422111 12223 32211
Q ss_pred --------CCCCCCCC-CHHHHHHHHHHhhc
Q 031951 90 --------KDQWSPAL-TISKVLLSICSLLT 111 (150)
Q Consensus 90 --------~~~W~p~~-~~~~il~~i~~ll~ 111 (150)
...|+|.. +|.+.|..|...|.
T Consensus 90 ~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 90 TWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred eeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 25688887 89999988887764
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=96.51 E-value=0.019 Score=37.88 Aligned_cols=27 Identities=15% Similarity=0.412 Sum_probs=22.6
Q ss_pred CCcEEEEEEeCCCCCCCCCCeeEEecc
Q 031951 46 AGGIFHVAINFPPDYPFKPPKVAFKTK 72 (150)
Q Consensus 46 ~gg~f~~~i~fp~~YP~~pP~i~f~t~ 72 (150)
..-.+.+.+.||++||..+|.|.+.+.
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECC
Confidence 345689999999999999999987654
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.60 E-value=0.019 Score=41.59 Aligned_cols=62 Identities=35% Similarity=0.555 Sum_probs=48.8
Q ss_pred EEEEeCCCCCCCCCCeeEEecccc---cceeeCC-----CceeccCCC-CCCCCCCCHHHHHHHHHHhhcC
Q 031951 51 HVAINFPPDYPFKPPKVAFKTKVF---HPNINNN-----GSICLDILK-DQWSPALTISKVLLSICSLLTD 112 (150)
Q Consensus 51 ~~~i~fp~~YP~~pP~i~f~t~i~---HPnv~~~-----G~vcl~~l~-~~W~p~~~~~~il~~i~~ll~~ 112 (150)
.+.|.|+.+||..+|.+.+....| +||++.. ..+|+---. ..|.+..++..+|..|..-|..
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 357899999999999887776543 5888865 679985432 6789999999999999887754
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=93.65 E-value=0.13 Score=40.81 Aligned_cols=85 Identities=18% Similarity=0.405 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccccceeeCCCc
Q 031951 4 KRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVFHPNINNNGS 83 (150)
Q Consensus 4 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~HPnv~~~G~ 83 (150)
.+|.+|+.++..+... .+. .++++....+.+. -+.....++|.+|.+||.++|.+...-++
T Consensus 102 s~ll~EIe~IGW~kl~--~i~-~d~~ls~i~l~~~------D~~R~H~l~l~l~~~yp~~~p~~~~~~P~---------- 162 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLV--QIQ-FDDDLSTIKLKIF------DSSRQHYLELKLPSNYPFEPPSCSLDLPI---------- 162 (291)
T ss_dssp -CHHHHHHHHHCGCCE--EEE-E-CCCSEEEEEEE------TTCEEEEEEEETTTTTTTSEEEECS-TTS----------
T ss_pred HHHHHHHHHhccccce--EEe-cCCCccEEEEEEE------cCCceEEEEEEECCCCCCCCceeeCCCCc----------
Confidence 4678888888765442 221 3577888888887 33377889999999999999976433221
Q ss_pred eeccCCCCCCCC-CCCHHHHHHHHHHhhc
Q 031951 84 ICLDILKDQWSP-ALTISKVLLSICSLLT 111 (150)
Q Consensus 84 vcl~~l~~~W~p-~~~~~~il~~i~~ll~ 111 (150)
.+...|.+ ..++.+++...+..+.
T Consensus 163 ----~~~~~w~~~~ssL~~v~~qF~~~le 187 (291)
T PF09765_consen 163 ----PFSLSWSPSQSSLKDVVQQFQEALE 187 (291)
T ss_dssp -----HHHHHHCHT-SHHHHHHHHHHHHH
T ss_pred ----chhhhhcccccCHHHHHHHHHHHHH
Confidence 11245888 6688888777666654
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.95 E-value=1.4 Score=33.34 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=35.7
Q ss_pred HHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECC--CCCCCCCcEEEEEEeCCCCCCCCCCeeEE
Q 031951 6 IIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGP--TDSPYAGGIFHVAINFPPDYPFKPPKVAF 69 (150)
Q Consensus 6 l~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp--~~t~y~gg~f~~~i~fp~~YP~~pP~i~f 69 (150)
..+|+..|....+...... .+.+...+.+.|.-- .+.-+.| .+.+.++++.+||.++|-|.+
T Consensus 7 Qe~E~EaLeSIY~de~~~i-~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFKHI-NSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred HHHHHHHHHHhccchhhhh-hccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence 3456666666444433111 122332355555521 2222333 789999999999999999943
No 37
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.21 E-value=9.6 Score=34.27 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=38.4
Q ss_pred HHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCC-cEEEEEEeCCCCCCC-CCCeeEEecc
Q 031951 5 RIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAG-GIFHVAINFPPDYPF-KPPKVAFKTK 72 (150)
Q Consensus 5 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~g-g~f~~~i~fp~~YP~-~pP~i~f~t~ 72 (150)
-|.+|+.-|-..-+ .+.++-.+-.-..-.+.+.||-.-. .| ...++.|.||.+||. .+|++.|..+
T Consensus 424 nLgeE~S~Ig~k~~-nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 424 NLGEEFSLIGVKIR-NVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hHHhHHhHhhcccc-ccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 35555555543222 2333322222344566777665433 33 345899999999999 5789998643
No 38
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=79.99 E-value=3.1 Score=31.86 Aligned_cols=39 Identities=23% Similarity=0.424 Sum_probs=26.7
Q ss_pred cccccc---eeeCCCceeccCCCCCCCCCC-CHHHHHHHHHHhhcCC
Q 031951 71 TKVFHP---NINNNGSICLDILKDQWSPAL-TISKVLLSICSLLTDP 113 (150)
Q Consensus 71 t~i~HP---nv~~~G~vcl~~l~~~W~p~~-~~~~il~~i~~ll~~~ 113 (150)
|++||+ ||+.+|+||+.... .|.. ++.+ +......|.+-
T Consensus 131 T~L~~aPffNV~~~G~VC~G~~~---~P~~~~~~~-i~~we~~FF~S 173 (228)
T TIGR03737 131 TKLYQAPLFNVWSNGEICAGNAR---LPDRPTVAN-ISAWEDAFFSS 173 (228)
T ss_pred CeeccCCcCccCCCCeEeeCCCc---CCCCcCHHH-HHHHHHHHhCC
Confidence 456773 88899999997653 4554 6666 77777666544
No 39
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=79.13 E-value=2.7 Score=30.65 Aligned_cols=40 Identities=23% Similarity=0.443 Sum_probs=24.3
Q ss_pred ccccc---ceeeCCCceeccCCCCCCCCCCCHHHHHHHHHH-hhcCC
Q 031951 71 TKVFH---PNINNNGSICLDILKDQWSPALTISKVLLSICS-LLTDP 113 (150)
Q Consensus 71 t~i~H---Pnv~~~G~vcl~~l~~~W~p~~~~~~il~~i~~-ll~~~ 113 (150)
|++|| +||+.+|+||+.... .|.....+.+..+.. +|.++
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~ 133 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP 133 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence 55677 499999999997642 234433444555554 44444
No 40
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=77.41 E-value=6.9 Score=31.62 Aligned_cols=59 Identities=25% Similarity=0.545 Sum_probs=41.6
Q ss_pred CCCCcEEEEEEeCCCCCCCCCCeeEEe-cccccceeeCCCceeccCCCCCCCCCC--CHHHHHHHHHH
Q 031951 44 PYAGGIFHVAINFPPDYPFKPPKVAFK-TKVFHPNINNNGSICLDILKDQWSPAL--TISKVLLSICS 108 (150)
Q Consensus 44 ~y~gg~f~~~i~fp~~YP~~pP~i~f~-t~i~HPnv~~~G~vcl~~l~~~W~p~~--~~~~il~~i~~ 108 (150)
||.|...+-+|.|...||..||-+.|. ..-|+|... . +..+ .+|++.- ++..++..+..
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L-~~Wd~~dp~~Ll~li~EL~~ 122 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSL-VNWDPSDPNCLLNLISELRQ 122 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchh-hcCCCCCchHHHHHHHHHHH
Confidence 499999999999999999999999996 334788421 1 1222 5787664 55555555543
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=60.51 E-value=14 Score=25.96 Aligned_cols=25 Identities=36% Similarity=0.689 Sum_probs=22.4
Q ss_pred CCcEEEEEEeCCCCCC-CCCCeeEEe
Q 031951 46 AGGIFHVAINFPPDYP-FKPPKVAFK 70 (150)
Q Consensus 46 ~gg~f~~~i~fp~~YP-~~pP~i~f~ 70 (150)
+.|.|.|.-.+|-.|| ..||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 4488999999999999 999999885
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=56.29 E-value=18 Score=26.78 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=22.6
Q ss_pred CCcEEEEEEeCCCCCCCCCCeeEEe
Q 031951 46 AGGIFHVAINFPPDYPFKPPKVAFK 70 (150)
Q Consensus 46 ~gg~f~~~i~fp~~YP~~pP~i~f~ 70 (150)
+.|.|.|+=.+|--||.++|.|.|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 4588999999999999999999886
No 43
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=55.90 E-value=27 Score=28.27 Aligned_cols=28 Identities=21% Similarity=0.435 Sum_probs=23.4
Q ss_pred CCCcEEEEEEeCCCCCCCCCCeeEEecc
Q 031951 45 YAGGIFHVAINFPPDYPFKPPKVAFKTK 72 (150)
Q Consensus 45 y~gg~f~~~i~fp~~YP~~pP~i~f~t~ 72 (150)
..+-.|-+++.+|..||...|.++|.+-
T Consensus 303 ~~~F~flvHi~Lp~~FP~~qP~ltlqS~ 330 (333)
T PF06113_consen 303 SGDFTFLVHISLPIQFPKDQPSLTLQSV 330 (333)
T ss_pred cCCeEEEEEEeccCCCCCcCCeEEEEee
Confidence 4445588899999999999999999864
No 44
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=53.19 E-value=7.4 Score=28.95 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=26.0
Q ss_pred CCceeccCCCCCCCCCCCHHHHHHHHHHhhc
Q 031951 81 NGSICLDILKDQWSPALTISKVLLSICSLLT 111 (150)
Q Consensus 81 ~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~ 111 (150)
.+.+|++++.+.|+|.+|.++.+.-++.++.
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDLMKKCVL 165 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999988876666554
No 45
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=49.67 E-value=56 Score=24.36 Aligned_cols=79 Identities=15% Similarity=0.286 Sum_probs=46.7
Q ss_pred CCCeeEEecccc--------cceeeCCCceeccCCCCCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHH
Q 031951 63 KPPKVAFKTKVF--------HPNINNNGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKL 134 (150)
Q Consensus 63 ~pP~i~f~t~i~--------HPnv~~~G~vcl~~l~~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~ 134 (150)
.||.|.+-..+. +-.-.+.-.+|+.+--.+|...-+...++.-|.....+.+.+ +.-.-+++...
T Consensus 105 VPplidl~ngVLigSVSP~iR~k~F~k~~~C~TlEvP~~~~~~~~~~~~~iL~~~~~s~~Rd-------e~i~kl~~~YP 177 (193)
T PF09892_consen 105 VPPLIDLGNGVLIGSVSPIIRRKYFKKEDFCMTLEVPNWKSDESKEEVLEILEIIKESKNRD-------EFIEKLKKKYP 177 (193)
T ss_pred CCCeeeccCCeEEeecCHHHHhcccCccceEEEEEcCCCccHHHHHHHHHHHHHHhcCCCHH-------HHHHHHHHHhh
Confidence 477777654433 222233457898776678877766666666555555544433 44444444444
Q ss_pred HHHHHHHHHHHHhc
Q 031951 135 KYENLARNWTQKYA 148 (150)
Q Consensus 135 ~f~~~~~~~~~~~a 148 (150)
+=.++|++.+++|=
T Consensus 178 ~q~~~A~~~a~~f~ 191 (193)
T PF09892_consen 178 EQAKKAKEYAKEFY 191 (193)
T ss_pred HHHHHHHHHHHHhc
Confidence 44677887777763
No 46
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=49.61 E-value=28 Score=25.03 Aligned_cols=24 Identities=21% Similarity=0.573 Sum_probs=21.6
Q ss_pred CcEEEEEEeCCCCCC-----CCCCeeEEe
Q 031951 47 GGIFHVAINFPPDYP-----FKPPKVAFK 70 (150)
Q Consensus 47 gg~f~~~i~fp~~YP-----~~pP~i~f~ 70 (150)
.|.|.|+-.+|--|| ..||.|.|.
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 488999999999999 799999886
No 47
>smart00340 HALZ homeobox associated leucin zipper.
Probab=47.30 E-value=17 Score=20.29 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhcC
Q 031951 3 SKRIIKELRDLQSD 16 (150)
Q Consensus 3 ~~Rl~~E~~~l~~~ 16 (150)
-|||++|+++|...
T Consensus 21 NrRL~ke~~eLral 34 (44)
T smart00340 21 NRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHhc
Confidence 38999999999764
No 48
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=45.35 E-value=53 Score=21.42 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=21.6
Q ss_pred CCCcEEEEEEeCCCCCCCCCCeeEEecc
Q 031951 45 YAGGIFHVAINFPPDYPFKPPKVAFKTK 72 (150)
Q Consensus 45 y~gg~f~~~i~fp~~YP~~pP~i~f~t~ 72 (150)
-+|..+.|...-|+.|| .|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 56778889888899999 599999865
No 49
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=45.29 E-value=53 Score=27.68 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=12.1
Q ss_pred EEEEEeCCCCCCCC
Q 031951 50 FHVAINFPPDYPFK 63 (150)
Q Consensus 50 f~~~i~fp~~YP~~ 63 (150)
..+.++||.+|+..
T Consensus 211 k~i~vtFP~dy~a~ 224 (441)
T COG0544 211 KDIKVTFPEDYHAE 224 (441)
T ss_pred eEEEEEcccccchh
Confidence 66889999999984
No 50
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=44.02 E-value=70 Score=19.61 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=32.5
Q ss_pred HHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 031951 105 SICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKYAM 149 (150)
Q Consensus 105 ~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 149 (150)
.|+.++..-++. ..+.++|...+.+--+.|...+-+-+.++|+
T Consensus 6 ~l~~lv~~id~~--~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPR--EQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCC--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556555665 6788899999999999999888888777663
No 51
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.79 E-value=44 Score=24.77 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCee
Q 031951 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKV 67 (150)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i 67 (150)
.++|+++|++.+.++--..++..|.-+....+++.+.--.++ ..|.+.-.+-|++
T Consensus 120 ~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~-----------~vP~~W~eS~~~~ 174 (203)
T KOG3285|consen 120 DLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT-----------EVPEKWDESGPKL 174 (203)
T ss_pred HHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc-----------cCCcchhcCCCeE
Confidence 368999999999998888888888877777888887743333 4555555555544
No 52
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=40.62 E-value=50 Score=21.14 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.3
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHh
Q 031951 124 EIAHLCKTDKLKYENLARNWTQKY 147 (150)
Q Consensus 124 ~aa~~~~~~~~~f~~~~~~~~~~~ 147 (150)
+...++++||++|.+..++.++..
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee~ 31 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEEM 31 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHH
Confidence 678889999999999988887654
No 53
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=39.90 E-value=44 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.3
Q ss_pred CCcEEEEEEeCCCCCCC-----CCCeeEEe
Q 031951 46 AGGIFHVAINFPPDYPF-----KPPKVAFK 70 (150)
Q Consensus 46 ~gg~f~~~i~fp~~YP~-----~pP~i~f~ 70 (150)
+.|.|.|+-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 34789999999999998 88888774
No 54
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=39.47 E-value=89 Score=19.11 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=29.6
Q ss_pred HHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHHHHhcC
Q 031951 105 SICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWTQKYAM 149 (150)
Q Consensus 105 ~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 149 (150)
.|+.++..-+|. ..+.+++..++.+=-+.|...+-..+.+.|+
T Consensus 4 ~l~~Lv~~iDp~--~~ld~~vee~Ll~laddFv~~v~~~ac~lAK 46 (68)
T PF03847_consen 4 KLQELVKQIDPN--EKLDPDVEELLLELADDFVDDVVSFACRLAK 46 (68)
T ss_dssp HHHHHHHCC-SS------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677666777 8888999999999889999888877776663
No 55
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=38.75 E-value=31 Score=30.05 Aligned_cols=29 Identities=34% Similarity=0.874 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEEeCCCCCCC---CCCeeEEecc
Q 031951 43 SPYAGGIFHVAINFPPDYPF---KPPKVAFKTK 72 (150)
Q Consensus 43 t~y~gg~f~~~i~fp~~YP~---~pP~i~f~t~ 72 (150)
+||.=|.|.+ +.+|++||+ +-|-++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 5788899988 568999999 6799999987
No 56
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=37.58 E-value=44 Score=26.88 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=22.3
Q ss_pred cEEEEEEeCCCCCCCCCCeeEEecc
Q 031951 48 GIFHVAINFPPDYPFKPPKVAFKTK 72 (150)
Q Consensus 48 g~f~~~i~fp~~YP~~pP~i~f~t~ 72 (150)
-++.+.+..+..||.+.|.|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 5678999999999999999998765
No 57
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=36.24 E-value=55 Score=24.18 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.7
Q ss_pred cEEEEEEeCCCCCCC-----CCCeeEEe
Q 031951 48 GIFHVAINFPPDYPF-----KPPKVAFK 70 (150)
Q Consensus 48 g~f~~~i~fp~~YP~-----~pP~i~f~ 70 (150)
|.|.|.-.+|--||. .||.|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 789999999999995 88888664
No 58
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=35.25 E-value=87 Score=24.43 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=33.2
Q ss_pred CCceeEEEEEECCCCCCCCCcE----EEEEEeCC-----CCCCCCCCeeEEecccccc
Q 031951 28 EGLFRWQATVIGPTDSPYAGGI----FHVAINFP-----PDYPFKPPKVAFKTKVFHP 76 (150)
Q Consensus 28 ~~~~~w~~~i~gp~~t~y~gg~----f~~~i~fp-----~~YP~~pP~i~f~t~i~HP 76 (150)
.|..-|.+... ..+|.-..|+ |+.++.+. .+-||+||+|+.+++-|..
T Consensus 100 KDp~PWkl~Yr-V~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~ft~ 156 (276)
T PF00845_consen 100 KDPIPWKLYYR-VEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQFTE 156 (276)
T ss_pred CCCCCeEEEEE-eecCccccceeeeeeeceeeecccccccccccCCCceEeeecccCc
Confidence 45566877776 4555544444 56666654 7899999999999986643
No 59
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=35.03 E-value=38 Score=25.57 Aligned_cols=53 Identities=26% Similarity=0.538 Sum_probs=43.2
Q ss_pred CCCCeeEEecccccceee--CCCceeccCCCCCC--CCCCCHHHHHHHHHHhhcCCC
Q 031951 62 FKPPKVAFKTKVFHPNIN--NNGSICLDILKDQW--SPALTISKVLLSICSLLTDPN 114 (150)
Q Consensus 62 ~~pP~i~f~t~i~HPnv~--~~G~vcl~~l~~~W--~p~~~~~~il~~i~~ll~~~~ 114 (150)
..||-|.|-.+.|.-.|+ +-|-|-.++...+| -|...+.+-|..|..+|-.|+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ 223 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPT 223 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCc
Confidence 479999999999999998 46666556666777 478899999999999998875
No 60
>KOG4385 consensus Predicted forkhead transcription factor [Transcription]
Probab=34.90 E-value=48 Score=28.37 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=45.7
Q ss_pred CCceeccCCC-------CCCCCCCCHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHHHCHHHHHHHHHHHH
Q 031951 81 NGSICLDILK-------DQWSPALTISKVLLSICSLLTDPNPDDDDPLVPEIAHLCKTDKLKYENLARNWT 144 (150)
Q Consensus 81 ~G~vcl~~l~-------~~W~p~~~~~~il~~i~~ll~~~~~~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 144 (150)
+|-||.++.. .+=.|-+|..++|. +.+|.+|+.. --+| |++.+|.+-..-|++.|.-|.
T Consensus 348 ~~Pisseia~N~dfyk~~dvRPPfTYAsLIR--qAIlESpdkQ--LTLN-EIY~WFTrtFAYFRRNaATWK 413 (581)
T KOG4385|consen 348 NGPISSEIAQNMDFYKNADVRPPFTYASLIR--QAILESPDKQ--LTLN-EIYNWFTRTFAYFRRNAATWK 413 (581)
T ss_pred cCchhHHhhhhhhhhhccccCCchhHHHHHH--HHHhcCchhh--ccHH-HHHHHHHHHHHHHhccchhHh
Confidence 6677877663 34567788888887 6788888765 4455 899999999999999998874
No 61
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=33.74 E-value=1.3e+02 Score=19.16 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=28.8
Q ss_pred eeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecccc
Q 031951 31 FRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTKVF 74 (150)
Q Consensus 31 ~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~i~ 74 (150)
..|.+.+.|+.+.....-+=++...+.+.|+. |...+..+.|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 57999999988765566677888889888776 6666665544
No 62
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=33.14 E-value=61 Score=25.43 Aligned_cols=30 Identities=17% Similarity=-0.003 Sum_probs=26.3
Q ss_pred CCchHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 031951 119 DPLVPEIAHLCKTDKLKYENLARNWTQKYA 148 (150)
Q Consensus 119 ~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a 148 (150)
.-.+.+++..|..++++|...+.+.+++.+
T Consensus 237 ~F~s~~aa~~F~~~P~~yi~~v~~~ar~~p 266 (281)
T PF12018_consen 237 AFSSREAAYRFAEDPERYIQAVLEKARKNP 266 (281)
T ss_pred EeCCHHHHHHHHHCHHHHHHHHHHHHhhCH
Confidence 456789999999999999999999998764
No 63
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=30.71 E-value=19 Score=18.73 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=8.5
Q ss_pred cccceeeCCCc-eec
Q 031951 73 VFHPNINNNGS-ICL 86 (150)
Q Consensus 73 i~HPnv~~~G~-vcl 86 (150)
.|||.++.+|+ .|-
T Consensus 2 ~yHPg~~~~g~W~CC 16 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCC 16 (32)
T ss_dssp EE-SS-EETTCESSS
T ss_pred CcCCCcccCCcCcCC
Confidence 48999998776 554
No 64
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=28.49 E-value=89 Score=18.56 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=18.3
Q ss_pred CchHHHHHHHHHCHHHHHHHHH
Q 031951 120 PLVPEIAHLCKTDKLKYENLAR 141 (150)
Q Consensus 120 ~~n~~aa~~~~~~~~~f~~~~~ 141 (150)
.-|++.+++..+|+++|.+...
T Consensus 33 ~~nP~l~q~I~~n~e~Fl~ll~ 54 (59)
T PF09280_consen 33 QSNPQLLQLIQQNPEEFLRLLN 54 (59)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHCHHHHHHHHc
Confidence 3578899999999999988754
No 65
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=26.93 E-value=1.1e+02 Score=26.50 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=22.2
Q ss_pred hHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 031951 122 VPEIAHLCKTDKLKYENLARNWTQKYA 148 (150)
Q Consensus 122 n~~aa~~~~~~~~~f~~~~~~~~~~~a 148 (150)
-.|+.++..+|+++|.+.|++..+++.
T Consensus 271 ~eea~~l~~~dp~~~~~~v~~Sl~rhv 297 (546)
T PF01175_consen 271 FEEANELRAEDPEEFKERVQESLARHV 297 (546)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 346677788899999999999988764
No 66
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=25.25 E-value=69 Score=19.06 Aligned_cols=19 Identities=11% Similarity=0.398 Sum_probs=11.9
Q ss_pred CCCCCCCCHHHHHHHHHHh
Q 031951 91 DQWSPALTISKVLLSICSL 109 (150)
Q Consensus 91 ~~W~p~~~~~~il~~i~~l 109 (150)
-+|.|.++|.+++...-.-
T Consensus 36 LgW~p~~~L~~~i~~~w~W 54 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRDAWNW 54 (62)
T ss_dssp C----SSSHHHHHHHHHHH
T ss_pred hCCCcCCCHHHHHHHHHHH
Confidence 4799999999999876553
No 67
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=24.76 E-value=1.4e+02 Score=17.90 Aligned_cols=30 Identities=20% Similarity=0.015 Sum_probs=24.6
Q ss_pred CCchHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 031951 119 DPLVPEIAHLCKTDKLKYENLARNWTQKYA 148 (150)
Q Consensus 119 ~~~n~~aa~~~~~~~~~f~~~~~~~~~~~a 148 (150)
..++.+++..+.++-+.|.+.+-+-+.+|+
T Consensus 18 ~ris~~a~~~l~~~~e~rl~~i~~~A~k~~ 47 (65)
T smart00803 18 GNLSDEAAKLLAEDVEYRIKEIVQEALKFM 47 (65)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999888888777765
No 68
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=24.59 E-value=1.1e+02 Score=24.35 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=20.6
Q ss_pred CCcEEEEEEeCCCCCC------------------CCCCeeEEe
Q 031951 46 AGGIFHVAINFPPDYP------------------FKPPKVAFK 70 (150)
Q Consensus 46 ~gg~f~~~i~fp~~YP------------------~~pP~i~f~ 70 (150)
+.|.|.|.=.+|.-|| ..||.|.|.
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 3488999999999997 578888775
No 69
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=24.42 E-value=1.2e+02 Score=26.15 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.5
Q ss_pred hHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 031951 122 VPEIAHLCKTDKLKYENLARNWTQKYA 148 (150)
Q Consensus 122 n~~aa~~~~~~~~~f~~~~~~~~~~~a 148 (150)
-.|+.++..+|+++|.++|++..+++.
T Consensus 272 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv 298 (545)
T TIGR01228 272 VEDADKLRQEEPEAYVKAAKQSMAKHV 298 (545)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 356777888999999999999888764
No 70
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=24.17 E-value=2.4e+02 Score=21.39 Aligned_cols=69 Identities=19% Similarity=0.341 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCC-------------------CC
Q 031951 2 ASKRIIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDY-------------------PF 62 (150)
Q Consensus 2 a~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~Y-------------------P~ 62 (150)
+..||.+.++++++.. .+...-|.+.+. |...---|| |.|.+.|.++= -.
T Consensus 10 ~~eR~~e~~~~~k~~L---------~~a~~GW~~~yy-p~~~~~~GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~tS~Y~~ 78 (235)
T PF14135_consen 10 PAERINEALAEYKKIL---------TSAPNGWKLEYY-PKTDQSYGG-YTFLMKFDDDGKVTMASDFDSASTPSTSSYRL 78 (235)
T ss_pred HHHHHHHHHHHHHHHH---------hcCCCceEEEEE-CCCCccCCc-EEEEEEECCCCeEEEEEccCCCCceeeEEEEE
Confidence 4578888888887621 123334777777 443321233 77777776543 11
Q ss_pred ---CCCeeEEec--ccccceeeCC
Q 031951 63 ---KPPKVAFKT--KVFHPNINNN 81 (150)
Q Consensus 63 ---~pP~i~f~t--~i~HPnv~~~ 81 (150)
.-|.+.|.| +++|--.+++
T Consensus 79 ~~~~gp~LsFdTyN~~iH~~s~p~ 102 (235)
T PF14135_consen 79 KQDQGPVLSFDTYNEYIHYFSDPS 102 (235)
T ss_pred ecCCceEEEEEeCCceEEEccCCC
Confidence 238888876 3567655543
No 71
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=24.14 E-value=1.2e+02 Score=23.19 Aligned_cols=24 Identities=25% Similarity=0.692 Sum_probs=20.7
Q ss_pred CcEEEEEEeCCCCCCC-------CCCeeEEe
Q 031951 47 GGIFHVAINFPPDYPF-------KPPKVAFK 70 (150)
Q Consensus 47 gg~f~~~i~fp~~YP~-------~pP~i~f~ 70 (150)
.|.|.|.-..|--||. .||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 4889999999999975 89999874
No 72
>PRK05414 urocanate hydratase; Provisional
Probab=24.03 E-value=1.2e+02 Score=26.19 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=22.6
Q ss_pred hHHHHHHHHHCHHHHHHHHHHHHHHhc
Q 031951 122 VPEIAHLCKTDKLKYENLARNWTQKYA 148 (150)
Q Consensus 122 n~~aa~~~~~~~~~f~~~~~~~~~~~a 148 (150)
-.|+..+..+|+++|.++|++..+++.
T Consensus 281 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv 307 (556)
T PRK05414 281 LEEAAELRAEDPEEFVKAAKASMARHV 307 (556)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 356778888999999999999988764
No 73
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=23.13 E-value=2.1e+02 Score=23.85 Aligned_cols=98 Identities=16% Similarity=0.318 Sum_probs=54.1
Q ss_pred HHHHHHHhhcCCCCCeeEeecCCCceeEEEEEECCCCCCCCCcEEE---------EEEeCCCCCCCCCCeeEEecccccc
Q 031951 6 IIKELRDLQSDPPSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFH---------VAINFPPDYPFKPPKVAFKTKVFHP 76 (150)
Q Consensus 6 l~~E~~~l~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~---------~~i~fp~~YP~~pP~i~f~t~i~HP 76 (150)
+..|.++|....|..-.+..... ....+.|. |... +-.+.++ +. .|...|++.||-++....+.|-
T Consensus 250 ne~Ev~Rir~eHPdd~~~vv~~~--~RvkG~L~-vsRA-fGd~~lK~~~~n~e~l~~-~fr~~~~~t~PyltaeP~i~~H 324 (390)
T KOG0700|consen 250 NEDEVRRIRSEHPDDPHIVVNKH--WRVKGILQ-VSRA-FGDGYLKWPEFNQEPLLE-KFRIPYIGTPPYLTAEPSITHH 324 (390)
T ss_pred cHHHHHHHHHhCCCCcceEeecc--ceeeEEEE-eeee-ccceeecchhhccchhHh-hcCCCCCCCCCceeccceEEEE
Confidence 56778888776654443332222 22233443 3322 3333332 12 6888999999999999888776
Q ss_pred eeeCCCceec---cCCCCCCCCCCCHHHHHHHHHHhhcC
Q 031951 77 NINNNGSICL---DILKDQWSPALTISKVLLSICSLLTD 112 (150)
Q Consensus 77 nv~~~G~vcl---~~l~~~W~p~~~~~~il~~i~~ll~~ 112 (150)
-+.++-++=+ |.| |. -++=++++.-+...+..
T Consensus 325 rL~p~DkFLIlASDGL---wE-~lsNeeaV~lV~~~i~~ 359 (390)
T KOG0700|consen 325 KLTPNDKFLILASDGL---WE-YLSNEEAVSLVHEFISG 359 (390)
T ss_pred EcCCCCeEEEEeccch---hh-hcChHHHHHHHHHhhcc
Confidence 6666544322 323 32 12445555555665553
No 74
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=23.02 E-value=1.2e+02 Score=23.96 Aligned_cols=25 Identities=24% Similarity=0.592 Sum_probs=21.0
Q ss_pred CCcEEEEEEeCCCCCC------------------CCCCeeEEe
Q 031951 46 AGGIFHVAINFPPDYP------------------FKPPKVAFK 70 (150)
Q Consensus 46 ~gg~f~~~i~fp~~YP------------------~~pP~i~f~ 70 (150)
+.|.|.|.-..|.-|| ..||.|.|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 4588999999999999 478888775
No 75
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=22.13 E-value=2.4e+02 Score=20.40 Aligned_cols=65 Identities=11% Similarity=0.219 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCC----CCCeeEeecCCCceeEEEEEECCCCCCCCCcEEEEEEeCCCCCCCCCCeeEEecc
Q 031951 4 KRIIKELRDLQSDP----PSSCSAGPIAEGLFRWQATVIGPTDSPYAGGIFHVAINFPPDYPFKPPKVAFKTK 72 (150)
Q Consensus 4 ~Rl~~E~~~l~~~~----~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~i~f~t~ 72 (150)
+...+|++.+.... -.|+.+. +.+.=...+.+..|.-.|- --...+++.| .||-..||+|.|+.+
T Consensus 8 akFdR~V~~~~~~~~a~r~rgwfLi--qa~fP~~~~iF~~~kvaP~-~~~~~lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 8 AKFDRQVGRFRPRADAYRMRGWFLI--QASFPTADVIFAAPKVAPR-SIGLRLRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred HHHHHHHhhhhhhhhHhhhcCeEEE--EccCceEEEEeeCCccCcc-ccceEEEEec-cccCcCCCceEEecc
Confidence 44667777776543 1344443 2233233334433444442 1223556666 689999999999876
No 76
>PRK11700 hypothetical protein; Provisional
Probab=22.06 E-value=2.8e+02 Score=20.66 Aligned_cols=53 Identities=21% Similarity=0.496 Sum_probs=34.2
Q ss_pred CcEEEEEEeCC--------------CCCCCCCCeeEE--ecc------cccceee-CCCceeccCCCCCCCCCCCHHHHH
Q 031951 47 GGIFHVAINFP--------------PDYPFKPPKVAF--KTK------VFHPNIN-NNGSICLDILKDQWSPALTISKVL 103 (150)
Q Consensus 47 gg~f~~~i~fp--------------~~YP~~pP~i~f--~t~------i~HPnv~-~~G~vcl~~l~~~W~p~~~~~~il 103 (150)
-|.=++++.+| .+.|..++-|++ .+| .-+|-|- .+|.+|+... .+++.+|+
T Consensus 109 eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~~vcIK~H------P~slk~IV 182 (187)
T PRK11700 109 EGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDGGICIKFH------PHSIKEIV 182 (187)
T ss_pred CCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEeeCCEEEEEc------CccHHHHH
Confidence 35667888877 334455554444 433 4577776 6899999865 45677776
Q ss_pred HH
Q 031951 104 LS 105 (150)
Q Consensus 104 ~~ 105 (150)
.+
T Consensus 183 ~S 184 (187)
T PRK11700 183 AS 184 (187)
T ss_pred Hh
Confidence 54
No 77
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=21.96 E-value=1.6e+02 Score=23.89 Aligned_cols=38 Identities=29% Similarity=0.654 Sum_probs=27.5
Q ss_pred eEEEEEECCCC-CCCCCcEEEEEEe---CCCCCCCCCCeeEEe
Q 031951 32 RWQATVIGPTD-SPYAGGIFHVAIN---FPPDYPFKPPKVAFK 70 (150)
Q Consensus 32 ~w~~~i~gp~~-t~y~gg~f~~~i~---fp~~YP~~pP~i~f~ 70 (150)
+|+..|.|-.+ .-|++|.+++++. |-..+- +.|+|||-
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~q-R~PriRfG 239 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQ-RGPRIRFG 239 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEeccccccccc-cCCceEee
Confidence 58899999554 4888999988876 433333 45699995
No 78
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=21.89 E-value=1.4e+02 Score=22.81 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=20.8
Q ss_pred CcEEEEEEeCCCCCCC-------CCCeeEEe
Q 031951 47 GGIFHVAINFPPDYPF-------KPPKVAFK 70 (150)
Q Consensus 47 gg~f~~~i~fp~~YP~-------~pP~i~f~ 70 (150)
.|.|.|.=.+|--||. .||.|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5889999999999986 89999874
No 79
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=21.63 E-value=67 Score=19.24 Aligned_cols=12 Identities=42% Similarity=0.720 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhc
Q 031951 4 KRIIKELRDLQS 15 (150)
Q Consensus 4 ~Rl~~E~~~l~~ 15 (150)
+||.+|++++.-
T Consensus 37 ~rL~kEL~d~D~ 48 (59)
T PF12065_consen 37 QRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHccc
Confidence 689999988864
No 80
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=21.42 E-value=31 Score=31.31 Aligned_cols=27 Identities=19% Similarity=0.546 Sum_probs=0.0
Q ss_pred cEEEEEEeCCCCCCCCCCeeEEecccc
Q 031951 48 GIFHVAINFPPDYPFKPPKVAFKTKVF 74 (150)
Q Consensus 48 g~f~~~i~fp~~YP~~pP~i~f~t~i~ 74 (150)
.+=.+.|++|.+||..+|.+.+.+.-|
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~~y 740 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRDEY 740 (799)
T ss_dssp ---------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHHHh
Confidence 444688999999999999987765543
No 81
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=21.27 E-value=1.4e+02 Score=23.71 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=20.2
Q ss_pred CCcEEEEEEeCCCCCC------------------CCCCeeEEe
Q 031951 46 AGGIFHVAINFPPDYP------------------FKPPKVAFK 70 (150)
Q Consensus 46 ~gg~f~~~i~fp~~YP------------------~~pP~i~f~ 70 (150)
+.|.|.|+=..|.-|| ..||.|.|.
T Consensus 175 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 175 ADGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 3488999999999997 567888774
No 82
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=21.04 E-value=1.2e+02 Score=20.02 Aligned_cols=27 Identities=11% Similarity=0.295 Sum_probs=21.9
Q ss_pred eEEEEEECCCCCCCCCcEEEEEEeCCC
Q 031951 32 RWQATVIGPTDSPYAGGIFHVAINFPP 58 (150)
Q Consensus 32 ~w~~~i~gp~~t~y~gg~f~~~i~fp~ 58 (150)
-.++.|.|+...+=.|..+.++|.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 368899999999999999999999865
No 83
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.85 E-value=95 Score=26.06 Aligned_cols=20 Identities=40% Similarity=0.856 Sum_probs=14.0
Q ss_pred EEEEeCCCCCCC-CCCeeEEe
Q 031951 51 HVAINFPPDYPF-KPPKVAFK 70 (150)
Q Consensus 51 ~~~i~fp~~YP~-~pP~i~f~ 70 (150)
.++..+|++||. +||++...
T Consensus 77 vlkf~LP~~YPs~spP~f~l~ 97 (445)
T KOG1814|consen 77 VLKFHLPNDYPSVSPPKFELK 97 (445)
T ss_pred eeeeecCCccccCCCCceeee
Confidence 356679999998 56666443
No 84
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=20.49 E-value=1.5e+02 Score=23.53 Aligned_cols=25 Identities=24% Similarity=0.595 Sum_probs=20.2
Q ss_pred CCcEEEEEEeCCCCCC------------------CCCCeeEEe
Q 031951 46 AGGIFHVAINFPPDYP------------------FKPPKVAFK 70 (150)
Q Consensus 46 ~gg~f~~~i~fp~~YP------------------~~pP~i~f~ 70 (150)
+.|.|.|.=.+|..|| ..||.|.|.
T Consensus 183 adG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 3588999999998887 477888774
No 85
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=20.26 E-value=82 Score=20.31 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHhhc
Q 031951 2 ASKRIIKELRDLQS 15 (150)
Q Consensus 2 a~~Rl~~E~~~l~~ 15 (150)
+++||.+|+...++
T Consensus 8 ~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 8 VVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777665543
No 86
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=20.12 E-value=1.7e+02 Score=23.00 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=27.2
Q ss_pred CCCCCCcEEEEEEeCCCCCCCCC--CeeEEecc
Q 031951 42 DSPYAGGIFHVAINFPPDYPFKP--PKVAFKTK 72 (150)
Q Consensus 42 ~t~y~gg~f~~~i~fp~~YP~~p--P~i~f~t~ 72 (150)
.+++.|..|++.+..|.+||-.- |.|.|+..
T Consensus 15 ~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDG 47 (264)
T COG2819 15 KSANTGRKYRIFIATPKNYPKPGGYPVLYMLDG 47 (264)
T ss_pred eecCCCcEEEEEecCCCCCCCCCCCcEEEEecc
Confidence 46789999999999999999988 99998753
Done!