Query 031952
Match_columns 150
No_of_seqs 107 out of 834
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_K RPS14E; ribosome, trans 100.0 1.4E-57 4.9E-62 351.2 14.8 150 1-150 1-151 (151)
2 3u5c_O RP59A, 40S ribosomal pr 100.0 1.6E-55 5.4E-60 335.3 9.3 135 16-150 3-137 (137)
3 3j20_M 30S ribosomal protein S 100.0 4.7E-51 1.6E-55 310.6 16.8 127 23-150 10-137 (137)
4 3r8n_K 30S ribosomal protein S 100.0 1.2E-50 4.2E-55 301.2 14.4 116 23-147 2-117 (117)
5 2vqe_K 30S ribosomal protein S 100.0 2E-49 6.7E-54 299.1 13.7 116 23-147 12-127 (129)
6 3bbn_K Ribosomal protein S11; 100.0 5.2E-49 1.8E-53 300.3 11.4 124 15-147 15-140 (140)
7 3r8s_O 50S ribosomal protein L 97.3 0.0026 8.7E-08 46.5 9.7 92 26-124 21-115 (116)
8 3v2d_S 50S ribosomal protein L 97.2 0.0026 8.9E-08 46.3 9.4 87 27-124 23-111 (112)
9 1vq8_N 50S ribosomal protein L 96.8 0.014 4.6E-07 46.0 10.9 91 28-125 33-130 (187)
10 1ovy_A 50S ribosomal protein L 96.5 0.0053 1.8E-07 45.2 6.0 93 25-124 26-119 (120)
11 3j21_O 50S ribosomal protein L 96.5 0.0054 1.8E-07 48.9 6.2 98 27-142 32-139 (203)
12 3bbo_Q Ribosomal protein L18; 95.9 0.0076 2.6E-07 46.5 4.2 92 25-124 63-160 (161)
13 2zjr_L 50S ribosomal protein L 95.9 0.003 1E-07 46.1 1.8 89 26-125 25-114 (114)
14 2zkr_n 60S ribosomal protein L 95.1 0.25 8.7E-06 41.3 11.2 103 25-143 46-182 (297)
15 4a17_M RPL5, 60S ribosomal pro 93.6 0.36 1.2E-05 40.4 8.8 107 25-143 46-182 (301)
16 3u5e_D 60S ribosomal protein L 93.2 1.3 4.6E-05 36.9 11.6 106 25-142 46-181 (297)
17 3iz5_Q 60S ribosomal protein L 84.6 5.4 0.00019 33.4 8.8 97 35-143 57-182 (304)
18 4e0a_A BH1408 protein; structu 63.5 29 0.00098 22.8 7.0 56 68-135 102-157 (164)
19 2q02_A Putative cytoplasmic pr 43.9 57 0.0019 24.3 6.2 50 78-129 22-71 (272)
20 3kws_A Putative sugar isomeras 42.8 20 0.00067 27.5 3.4 44 78-129 41-84 (287)
21 3eo4_A Uncharacterized protein 40.8 78 0.0027 21.0 6.8 50 67-128 103-152 (164)
22 3qxb_A Putative xylose isomera 40.4 56 0.0019 25.4 5.8 44 78-129 38-90 (316)
23 1vhs_A Similar to phosphinothr 37.5 98 0.0033 21.2 6.2 49 68-128 95-143 (175)
24 3ngf_A AP endonuclease, family 35.9 55 0.0019 24.7 5.0 43 78-129 26-68 (269)
25 2ge3_A Probable acetyltransfer 35.6 99 0.0034 20.7 6.4 51 68-130 99-149 (170)
26 3obe_A Sugar phosphate isomera 35.6 71 0.0024 25.0 5.7 51 77-129 38-96 (305)
27 3pzj_A Probable acetyltransfer 35.3 1.1E+02 0.0039 21.5 6.4 50 67-128 132-181 (209)
28 1i60_A IOLI protein; beta barr 35.0 52 0.0018 24.5 4.6 45 78-130 17-67 (278)
29 3g9k_S Capsule biosynthesis pr 34.6 39 0.0013 25.5 3.8 20 39-58 2-21 (177)
30 2jlm_A Putative phosphinothric 34.2 1.1E+02 0.0039 21.1 7.0 49 68-128 104-152 (182)
31 2jvf_A De novo protein M7; tet 33.2 55 0.0019 22.1 3.9 27 71-97 60-86 (96)
32 2j8m_A Acetyltransferase PA486 33.2 1.1E+02 0.0038 20.6 7.2 50 67-128 95-144 (172)
33 1on0_A YYCN protein; structura 32.7 72 0.0025 21.5 4.8 47 68-126 102-148 (158)
34 2zds_A Putative DNA-binding pr 32.4 1.1E+02 0.0038 23.5 6.4 46 78-129 18-71 (340)
35 3aoe_E Glutamate dehydrogenase 31.9 70 0.0024 27.5 5.4 58 67-133 195-252 (419)
36 2ae6_A Acetyltransferase, GNAT 31.7 1.2E+02 0.004 20.4 7.0 51 68-130 95-145 (166)
37 3g8w_A Lactococcal prophage PS 31.6 1.1E+02 0.0038 20.1 6.9 50 68-129 95-144 (169)
38 2zvr_A Uncharacterized protein 31.4 51 0.0017 25.2 4.1 45 78-130 44-89 (290)
39 3f8k_A Protein acetyltransfera 30.6 1.1E+02 0.0039 19.9 6.4 48 68-127 87-134 (160)
40 2g0w_A LMO2234 protein; putati 30.6 88 0.003 24.0 5.4 50 78-129 39-88 (296)
41 3d8p_A Acetyltransferase of GN 30.5 1.1E+02 0.0038 19.8 6.8 49 68-128 92-140 (163)
42 3a11_A Translation initiation 30.1 59 0.002 26.9 4.5 52 75-133 152-203 (338)
43 2cy2_A TTHA1209, probable acet 29.2 1.2E+02 0.0041 19.7 7.2 51 68-130 102-152 (174)
44 3fix_A N-acetyltransferase; te 28.8 1.4E+02 0.0047 20.2 6.3 50 67-128 123-172 (183)
45 3k92_A NAD-GDH, NAD-specific g 28.8 52 0.0018 28.4 4.0 61 64-133 195-255 (424)
46 2fe7_A Probable N-acetyltransf 28.1 1.2E+02 0.0043 19.6 5.8 46 68-125 102-147 (166)
47 3fau_A NEDD4-binding protein 2 28.0 1.2E+02 0.0041 19.3 6.6 57 70-127 10-71 (82)
48 2i79_A Acetyltransferase, GNAT 27.6 1.4E+02 0.0049 20.0 7.2 50 68-129 100-150 (172)
49 1mk4_A Hypothetical protein YQ 27.5 1.3E+02 0.0043 19.5 6.0 49 67-127 81-129 (157)
50 3i9s_A Integron cassette prote 27.5 1.4E+02 0.0047 20.1 5.5 47 68-126 117-163 (183)
51 3dr6_A YNCA; acetyltransferase 26.6 1.3E+02 0.0046 19.4 7.2 51 68-130 96-146 (174)
52 3pp9_A Putative streptothricin 26.5 1.5E+02 0.0052 20.0 6.9 50 68-129 114-163 (187)
53 3l23_A Sugar phosphate isomera 26.2 75 0.0026 24.8 4.3 48 78-129 32-79 (303)
54 1u6m_A Acetyltransferase, GNAT 26.2 1.3E+02 0.0045 20.9 5.4 51 68-130 126-176 (199)
55 3igr_A Ribosomal-protein-S5-al 26.2 1.5E+02 0.005 19.7 7.4 50 68-129 109-159 (184)
56 1k77_A EC1530, hypothetical pr 26.0 70 0.0024 23.7 4.0 42 79-129 19-60 (260)
57 3aog_A Glutamate dehydrogenase 25.9 70 0.0024 27.7 4.4 60 67-135 212-271 (440)
58 1s3z_A Aminoglycoside 6'-N-ace 25.7 1.5E+02 0.005 19.5 7.7 47 69-127 110-156 (165)
59 2q7b_A Acetyltransferase, GNAT 25.1 1.7E+02 0.0057 20.0 6.2 47 70-128 113-159 (181)
60 2vzy_A RV0802C; transferase, G 25.1 1.8E+02 0.0061 20.4 7.0 51 68-130 119-170 (218)
61 1z4e_A Transcriptional regulat 25.0 1.5E+02 0.005 19.4 5.3 50 67-128 98-147 (153)
62 3ktc_A Xylose isomerase; putat 25.0 1.4E+02 0.0046 23.5 5.7 46 78-130 36-82 (333)
63 4evy_A Aminoglycoside N(6')-ac 24.9 1.6E+02 0.0053 19.6 6.5 48 68-127 109-156 (166)
64 2i6c_A Putative acetyltransfer 24.4 1.5E+02 0.005 19.1 7.0 51 68-130 89-140 (160)
65 2oh1_A Acetyltransferase, GNAT 24.3 1.6E+02 0.0054 19.5 6.8 50 68-129 117-166 (179)
66 2z10_A Ribosomal-protein-alani 23.9 1.8E+02 0.006 19.9 6.3 51 68-130 102-153 (194)
67 3lmz_A Putative sugar isomeras 23.7 1.5E+02 0.005 22.1 5.5 44 78-129 33-81 (257)
68 2x7b_A N-acetyltransferase SSO 23.5 1.7E+02 0.0059 19.6 7.0 51 68-130 101-152 (168)
69 2b5g_A Diamine acetyltransfera 23.2 1.6E+02 0.0056 19.2 5.7 47 68-126 102-148 (171)
70 1tiq_A Protease synthase and s 23.0 1.9E+02 0.0064 19.8 7.2 51 68-130 104-154 (180)
71 4a4y_A Protein MXIG; protein b 22.9 90 0.0031 22.4 3.8 24 27-51 84-107 (146)
72 2qul_A D-tagatose 3-epimerase; 22.8 96 0.0033 23.2 4.3 44 78-129 20-67 (290)
73 1ytb_A Protein (tata binding p 22.8 74 0.0025 24.2 3.5 50 36-89 39-88 (180)
74 1yr0_A AGR_C_1654P, phosphinot 22.5 1.8E+02 0.0062 19.5 6.9 50 67-128 96-145 (175)
75 2dxq_A AGR_C_4057P, acetyltran 22.1 1.8E+02 0.006 19.2 6.4 45 68-124 95-139 (150)
76 2dg5_B Gamma-glutamyltranspept 22.1 85 0.0029 23.8 3.8 18 39-56 2-19 (190)
77 1f75_A Undecaprenyl pyrophosph 22.0 2.6E+02 0.0089 22.1 6.8 63 73-136 49-121 (249)
78 1yx1_A Hypothetical protein PA 21.9 1.1E+02 0.0038 22.9 4.4 46 78-129 26-71 (264)
79 3tva_A Xylose isomerase domain 21.7 1.5E+02 0.0051 22.3 5.2 46 79-129 25-71 (290)
80 2eui_A Probable acetyltransfer 21.7 1.6E+02 0.0055 18.6 5.3 47 67-125 91-137 (153)
81 2fia_A Acetyltransferase; stru 21.6 1.7E+02 0.0057 18.8 6.7 52 68-131 89-140 (162)
82 2zqe_A MUTS2 protein; alpha/be 21.5 1.7E+02 0.006 18.9 6.6 55 69-131 13-67 (83)
83 2z8u_A Tata-box-binding protei 21.4 94 0.0032 23.7 3.9 49 38-90 49-97 (188)
84 3lod_A Putative acyl-COA N-acy 21.4 1.7E+02 0.0059 18.9 6.0 49 67-127 87-135 (162)
85 1ufh_A YYCN protein; alpha and 21.4 1.7E+02 0.0057 19.5 5.0 47 68-126 126-172 (180)
86 1mp9_A Tata-binding protein; t 21.1 1.3E+02 0.0045 23.1 4.7 49 38-90 49-97 (198)
87 2cnt_A Modification of 30S rib 21.1 1.9E+02 0.0064 19.1 6.6 49 68-128 77-125 (160)
88 2qmc_B GGT, gamma-glutamyltran 21.1 82 0.0028 23.9 3.5 18 39-56 2-19 (188)
89 3eik_A Tata-box-binding protei 20.8 95 0.0033 24.5 3.9 48 38-89 79-126 (218)
90 3cqj_A L-ribulose-5-phosphate 20.7 93 0.0032 23.6 3.8 44 78-129 33-86 (295)
91 2r4q_A Phosphotransferase syst 20.4 1.1E+02 0.0038 21.3 3.8 26 73-99 18-43 (106)
92 1yk3_A Hypothetical protein RV 20.2 2.2E+02 0.0075 20.5 5.7 51 69-131 141-193 (210)
93 1ais_A TBP, protein (tata-bind 20.2 1.3E+02 0.0043 22.8 4.4 48 39-90 46-93 (182)
94 2r48_A Phosphotransferase syst 20.2 1.2E+02 0.0041 21.1 4.0 27 72-99 17-43 (106)
95 2v36_B Gamma-glutamyltranspept 20.1 88 0.003 23.9 3.5 18 39-56 2-19 (193)
96 4h89_A GCN5-related N-acetyltr 20.0 2.1E+02 0.0073 19.4 5.9 52 68-130 102-154 (173)
No 1
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=100.00 E-value=1.4e-57 Score=351.24 Aligned_cols=150 Identities=77% Similarity=1.148 Sum_probs=136.3
Q ss_pred CCCCCCCCccceeeecCCc-ccCCceeeeEEEEEccCCCeEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHH
Q 031952 1 MSRRKTREPKEENVTLGPA-VRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQD 79 (150)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ilhI~~t~NNT~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~ 79 (150)
|+.++..+..+++++|||+ +.++++..|++||++|+|||||||||++|++++|||||+++||++++|+||||||+||++
T Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~gi~hI~asfNNTiVtiTD~~G~~~~~~ssgg~~~k~~r~ksTpyAAq~aa~~ 80 (151)
T 2xzm_K 1 MAPKKTAPVQKEVISYGPPNVGANENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAID 80 (151)
T ss_dssp -----------CCCCCSCSCCCTTCCCEEEEEEEBCSSCBCCEEECTTCCSEEEECCHHHHCSSGGGGSCHHHHHHHHHH
T ss_pred CCCccccccccceeecCCccccCCCeeeeEEEEEccCCCEEEEEECCCCCEEEEEecCcceEeCCCCcCCHHHHHHHHHH
Confidence 5666666655577899999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEeccCCCCCCCCCCCCCCCCCC
Q 031952 80 VSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150 (150)
Q Consensus 80 i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~TpiphNGcR~kK~RR~~~~ 150 (150)
++++|+++||+.|+|+|+|+||+++||+|+||+++|++|+.+|++|.+|+|+||||||||||||+||+||+
T Consensus 81 ~a~~a~e~Gi~~v~V~vkG~gg~~~kgpG~GresairaL~~~GlkI~~I~DvTpiPhNGcRp~K~RRvr~~ 151 (151)
T 2xzm_K 81 VVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREGGRRGRRL 151 (151)
T ss_dssp HHHHHHHHTCCEEEEEEECCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEECCCCCSSCCCCSSCTTCSCC
T ss_pred HHHHHHHcCCeEEEEEEEcCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEeCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996
No 2
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=100.00 E-value=1.6e-55 Score=335.26 Aligned_cols=135 Identities=77% Similarity=1.216 Sum_probs=125.3
Q ss_pred cCCcccCCceeeeEEEEEccCCCeEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEE
Q 031952 16 LGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIK 95 (150)
Q Consensus 16 ~~~~~~~~~~~~~ilhI~~t~NNT~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi~~v~V~ 95 (150)
-.+++.|.+++.|++||++|+||||||+||++|++++|+|||++|||++++|+||||||+||++++++|+++||+.|+|+
T Consensus 3 ~~~~~~~~~~~~gi~hI~asfNNTivtvTD~~G~~~~~~ssG~~gfKg~r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~ 82 (137)
T 3u5c_O 3 NVVQARDNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHVK 82 (137)
T ss_dssp --------CCCEEECCEEEETTEEEECCEETTSSSCCCCCBTTTTSCCSTTTTCHHHHHHHHHHHHHHHHHHTCCEEECE
T ss_pred ccceeccCceeeEEEEEEccCCCEEEEEEcCCCCEEEEEeCCCcEEeCCcccCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45778899999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred EEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEeccCCCCCCCCCCCCCCCCCC
Q 031952 96 LRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150 (150)
Q Consensus 96 ~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~TpiphNGcR~kK~RR~~~~ 150 (150)
|+|+||+++||+|+||+++|++|+.+|++|.+|+|+||||||||||||+||+|||
T Consensus 83 vra~gg~~~kgpG~Gr~sairaL~~~Gl~I~~I~DvTpiPhnGcRp~K~RR~~~~ 137 (137)
T 3u5c_O 83 IRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRRGRRL 137 (137)
T ss_dssp EECSCTTSCCSCCGGGHHHHHHHHTTTCEECCCEECCCCCSSCSCCTTCTTCCCC
T ss_pred EeccCCCcccCCCcchHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999996
No 3
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.7e-51 Score=310.64 Aligned_cols=127 Identities=56% Similarity=0.923 Sum_probs=121.0
Q ss_pred CceeeeEEEEEccCCCeEEEEeCCCCC-eEEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCC
Q 031952 23 GEHVFGVAHIFASFNDTFIHVTDLSGR-ETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGG 101 (150)
Q Consensus 23 ~~~~~~ilhI~~t~NNT~itlTD~~G~-~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g 101 (150)
.+++.|++||++|+||||||+||++|+ ++.|+|+|++||++.+ |+||||||+||+.++++|+++||+.|+|+|+|+||
T Consensus 10 ~~~~~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg~~-ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~gg 88 (137)
T 3j20_M 10 KKEKWGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADRD-EPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGG 88 (137)
T ss_dssp SCCEEEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCTTT-SSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCCS
T ss_pred cCCcceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecCCc-cCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC
Confidence 446899999999999999999999995 8888888888887666 99999999999999999999999999999999999
Q ss_pred CcccCCCCChHHHHHHHHhCCCeEEEEEeccCCCCCCCCCCCCCCCCCC
Q 031952 102 NKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150 (150)
Q Consensus 102 ~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~TpiphNGcR~kK~RR~~~~ 150 (150)
++.|-+|+||+++|++|+.+|++|.+|+|+|||||||||||+.||+|||
T Consensus 89 ~~~~~pG~GresairaL~~~Gl~I~~I~DvTpiPhnGcRp~g~rr~rrv 137 (137)
T 3j20_M 89 SKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRRGRRV 137 (137)
T ss_dssp SSCCSCCTHHHHHHHHHHHHTCEEEEEEECCCCCSSCCCCSCCSSSSCC
T ss_pred CCCcCCCCcHHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999997
No 4
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=100.00 E-value=1.2e-50 Score=301.22 Aligned_cols=116 Identities=41% Similarity=0.649 Sum_probs=112.7
Q ss_pred CceeeeEEEEEccCCCeEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCC
Q 031952 23 GEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGN 102 (150)
Q Consensus 23 ~~~~~~ilhI~~t~NNT~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~ 102 (150)
+++..|++||++|+||||||+||++|++++|+|+|++|||+++ |+||||||+||++++++|+++|++.|+|++
T Consensus 2 ~~~~~gi~hI~as~NNTivtiTD~~G~~i~~~S~G~~gfKg~r-k~tp~AA~~aa~~~~~~~~~~Gi~~v~v~v------ 74 (117)
T 3r8n_K 2 KQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSR-KSTPFAAQVAAERCADAVKEYGIKNLEVMV------ 74 (117)
T ss_dssp CCCCEEEEEEEECSSCEEEEEECTTSCCSEEEETGGGSCCGGG-GSSHHHHHHHHHHHHHHHTTSCCCEEEEEE------
T ss_pred cccceeEEEEEcccCCEEEEEEcCCCCEEEEEcCCccccCCCc-cCCHHHHHHHHHHHHHHHHHhCCcEEEEEE------
Confidence 5678999999999999999999999999999999999999887 999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHhCCCeEEEEEeccCCCCCCCCCCCCCCC
Q 031952 103 KTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRG 147 (150)
Q Consensus 103 ~~kG~G~gr~~~lk~L~~~gl~I~~I~D~TpiphNGcR~kK~RR~ 147 (150)
||+|+||+++|++|+.+|++|.+|+|+||+|||||||||+|||
T Consensus 75 --kG~G~Gr~~airaL~~~Gl~I~~I~DvTpiphnGcRp~K~RRv 117 (117)
T 3r8n_K 75 --KGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV 117 (117)
T ss_dssp --ECSSSSTTHHHHHHHHTTCEEEEEEECCCCCSSCSCCCCCCCC
T ss_pred --eCCCccHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999986
No 5
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=100.00 E-value=2e-49 Score=299.13 Aligned_cols=116 Identities=33% Similarity=0.515 Sum_probs=112.6
Q ss_pred CceeeeEEEEEccCCCeEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCC
Q 031952 23 GEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGN 102 (150)
Q Consensus 23 ~~~~~~ilhI~~t~NNT~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~ 102 (150)
+++..|++||++|+||||||+||++|++++|+|+|++|||+++ |+||||||+||++++++|+|+|++.|+|+|
T Consensus 12 ~~~~~gi~hI~as~NNTivtiTd~~G~~~~~~SaG~~gfKg~r-k~tp~AA~~aa~~~~~~~~~~Gi~~v~V~v------ 84 (129)
T 2vqe_K 12 RQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSR-KGTPYAAQLAALDAAKKAMAYGMQSVDVIV------ 84 (129)
T ss_dssp CCCSEEEEEEEECSSCEEEEEECTTSCEEEECCTTTTTCCSGG-GGSHHHHHHHHHHHHHHHHTTTCCEEEEEE------
T ss_pred ccccceEEEEEecCCCEEEEEEcCCCCEEEEEeccceeEcCCC-cCCHHHHHHHHHHHHHHHHHhCCeEEEEEE------
Confidence 4577899999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHhCCCeEEEEEeccCCCCCCCCCCCCCCC
Q 031952 103 KTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRG 147 (150)
Q Consensus 103 ~~kG~G~gr~~~lk~L~~~gl~I~~I~D~TpiphNGcR~kK~RR~ 147 (150)
+|+|+||+++|++|+.+|++|.+|+|+||+|||||||||+||+
T Consensus 85 --kG~G~Gre~airaL~~~Gl~I~~I~DvTpiPhnGcRp~K~RRv 127 (129)
T 2vqe_K 85 --RGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK 127 (129)
T ss_dssp --ESCCTTHHHHHHHHHTSSSEEEECEECCCCCSSCSCCCGGGCS
T ss_pred --ECCCCCHHHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999986
No 6
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=5.2e-49 Score=300.29 Aligned_cols=124 Identities=32% Similarity=0.500 Sum_probs=113.3
Q ss_pred ecCCccc--CCceeeeEEEEEccCCCeEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcEE
Q 031952 15 TLGPAVR--DGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITAL 92 (150)
Q Consensus 15 ~~~~~~~--~~~~~~~ilhI~~t~NNT~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi~~v 92 (150)
+.+.... .+++..|++||++|+|||||||||++|++++|+|+|++|||+++ |+||||||++|++++++|+|+|++.|
T Consensus 15 ~~~~~k~~~~k~~~~gi~hI~as~NNTivtiTD~~G~~i~~~SaG~~GfKg~r-ksTp~AA~~aa~~~~~~a~e~Gi~~v 93 (140)
T 3bbn_K 15 RISSRKSASARKIPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGTK-RGTPFAAQTAAGNAIRTVVEQGMQRA 93 (140)
T ss_dssp --------CCCCCCCCEEEEEECSSCEEEEEECSSSCEEEEEETTTSSCCTTS-CSSHHHHHHHHTSGGGTSTTTCCCEE
T ss_pred ccccccccccccceeeEEEEEecCCCEEEEEEcCCCCEEEEEeccceeEcccc-cCCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 3433444 45688999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred EEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEeccCCCCCCCCCCCCCCC
Q 031952 93 HIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRG 147 (150)
Q Consensus 93 ~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~TpiphNGcR~kK~RR~ 147 (150)
+|+| +|+|+||+++|++|+.+|++|.+|+|+||+|||||||||+||+
T Consensus 94 ~V~v--------kG~G~GReaairaL~~~Gl~I~~I~DvTpiPhnGcRppK~RRv 140 (140)
T 3bbn_K 94 EVMI--------KGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV 140 (140)
T ss_dssp EEEE--------ESCSTTSSHHHHHHHTTTCEEEEEEECCCCCCSCCCCCCCCCC
T ss_pred EEEE--------ECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCCCCCCCCCCCC
Confidence 9999 9999999999999999999999999999999999999999985
No 7
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=97.26 E-value=0.0026 Score=46.53 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=62.6
Q ss_pred eeeEEEEEccCCCeEEEEeCCCCC-eEEEEEeecCccccC-CCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCc
Q 031952 26 VFGVAHIFASFNDTFIHVTDLSGR-ETLVRITGGMKVKAD-RDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNK 103 (150)
Q Consensus 26 ~~~ilhI~~t~NNT~itlTD~~G~-~~~~~SsG~~g~kk~-~rK~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~ 103 (150)
..+-|.|+.|.+++...+.|..+. ++.+.|+-....++. .......||..+++.++++|.+.||+.|. |. .+|..
T Consensus 21 ~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vv--fD-rgg~~ 97 (116)
T 3r8s_O 21 GATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVS--FD-RSGFQ 97 (116)
T ss_dssp TCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHHHTTTCCCCE--EE-CTTSC
T ss_pred CCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEE--Ee-cCCCc
Confidence 467888899999999999997655 454333333333321 11356788999999999999999999875 43 23333
Q ss_pred ccCCCCCh-HHHHHHHHhCCCe
Q 031952 104 TKTPGPGA-QSALRALARSGMK 124 (150)
Q Consensus 104 ~kG~G~gr-~~~lk~L~~~gl~ 124 (150)
.. || +++..++...||+
T Consensus 98 yh----GrV~Ala~~are~Gl~ 115 (116)
T 3r8s_O 98 YH----GRVQALADAAREAGLQ 115 (116)
T ss_dssp SS----SHHHHHHHHHHHTTCC
T ss_pred cc----HHHHHHHHHHHHhCCC
Confidence 21 35 5566777778875
No 8
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=97.24 E-value=0.0026 Score=46.34 Aligned_cols=87 Identities=15% Similarity=0.223 Sum_probs=63.0
Q ss_pred eeEEEEEccCCCeEEEEeCCCCCe-EEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCccc
Q 031952 27 FGVAHIFASFNDTFIHVTDLSGRE-TLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTK 105 (150)
Q Consensus 27 ~~ilhI~~t~NNT~itlTD~~G~~-~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~k 105 (150)
.+-|.|+.|.+++...+.|..|.. +.+.|+-...++ .+...||+.+++.++++|.+.||+.| .|. .+|.+..
T Consensus 23 rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k----~~n~~AA~~vG~llA~ra~~~GI~~v--vfD-rgg~~yh 95 (112)
T 3v2d_S 23 RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK----GNKTEVARQVGRALAEKALALGIKQV--AFD-RGPYKYH 95 (112)
T ss_dssp CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC----CCHHHHHHHHHHHHHHHHHTTTCCBC--EEE-CTTSCSC
T ss_pred CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc----CCCHHHHHHHHHHHHHHHHHCCCCEE--EEe-cCCCccc
Confidence 688899999999999999877654 444444444443 34567889999999999999999987 443 2333331
Q ss_pred CCCCCh-HHHHHHHHhCCCe
Q 031952 106 TPGPGA-QSALRALARSGMK 124 (150)
Q Consensus 106 G~G~gr-~~~lk~L~~~gl~ 124 (150)
|| +++..++...||+
T Consensus 96 ----GrV~Ala~~are~GL~ 111 (112)
T 3v2d_S 96 ----GRVKALAEGAREGGLE 111 (112)
T ss_dssp ----SSTTHHHHHHHHTTCB
T ss_pred ----HHHHHHHHHHHHcCCC
Confidence 34 6677888888886
No 9
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=96.84 E-value=0.014 Score=46.03 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=62.9
Q ss_pred eEEEEEccCCCeEEEEe--CCCCCeEEE-EEeecCcccc---CCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCC
Q 031952 28 GVAHIFASFNDTFIHVT--DLSGRETLV-RITGGMKVKA---DRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGG 101 (150)
Q Consensus 28 ~ilhI~~t~NNT~itlT--D~~G~~~~~-~SsG~~g~kk---~~rK~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g 101 (150)
+-|.|+.|.+++++.+. |..|..+++ .|+--.. +. .. .....||..+++.++++|.+.|+..| .|. .+|
T Consensus 33 pRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k~~-~~N~~AA~~vG~llA~Ral~kGI~~v--vfD-rgg 107 (187)
T 1vq8_N 33 PRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWEAP-TGNMPSAYLTGLLAGLRAQEAGVEEA--VLD-IGL 107 (187)
T ss_dssp CEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCCSC-SSSHHHHHHHHHHHHHHHHHTTCCBC--EEE-CTT
T ss_pred CEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccccC-CCcHHHHHHHHHHHHHHHHHCCCCEE--EEc-CCC
Confidence 77889999999999999 777665443 3333322 21 22 35678889999999999999999987 453 122
Q ss_pred CcccCCCCCh-HHHHHHHHhCCCeE
Q 031952 102 NKTKTPGPGA-QSALRALARSGMKI 125 (150)
Q Consensus 102 ~~~kG~G~gr-~~~lk~L~~~gl~I 125 (150)
.+.. .| || .++++++...||++
T Consensus 108 ~~yh-~G-gRV~Ala~gAre~GL~f 130 (187)
T 1vq8_N 108 NSPT-PG-SKVFAIQEGAIDAGLDI 130 (187)
T ss_dssp SCCC-TT-CHHHHHHHHHHHTTCBC
T ss_pred ceec-cc-hHHHHHHHHhhcCCEec
Confidence 2221 01 45 67888889999874
No 10
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=96.52 E-value=0.0053 Score=45.17 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=63.2
Q ss_pred eeeeEEEEEccCCCeEEEEeCCCCCe-EEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCc
Q 031952 25 HVFGVAHIFASFNDTFIHVTDLSGRE-TLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNK 103 (150)
Q Consensus 25 ~~~~ilhI~~t~NNT~itlTD~~G~~-~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~ 103 (150)
...+-|.|+.|.+++++.+.|..|.. +.+.|+-...++... .....||..+++.++++|.+.|+..| .|. .+|.+
T Consensus 26 ~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~~~~-~~n~~AA~~vG~llA~Ral~~GI~~v--vfD-rgg~~ 101 (120)
T 1ovy_A 26 TERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDS-TNNIEAAKKVGELVAKRALEKGIKQV--VFD-RGGYL 101 (120)
T ss_dssp SSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCSSC-TTSHHHHHHHHHHHHHHHHHHSSSCC--CCC-STTCS
T ss_pred CCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhCcCC-CCcHHHHHHHHHHHHHHHHHCCCCEE--EEe-cCCcc
Confidence 33567888899999999999987654 544444333344222 46678899999999999999999976 452 23333
Q ss_pred ccCCCCChHHHHHHHHhCCCe
Q 031952 104 TKTPGPGAQSALRALARSGMK 124 (150)
Q Consensus 104 ~kG~G~gr~~~lk~L~~~gl~ 124 (150)
. +---.++++++...||+
T Consensus 102 y---hgrV~ala~~are~GL~ 119 (120)
T 1ovy_A 102 Y---HGRVKALADAAREAGLE 119 (120)
T ss_dssp S---CSSTHHHHHHHHHHHCC
T ss_pred c---cHHHHHHHHHHHHhCCc
Confidence 2 11236677777777765
No 11
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.47 E-value=0.0054 Score=48.90 Aligned_cols=98 Identities=13% Similarity=0.139 Sum_probs=67.3
Q ss_pred eeEEEEEccCCCeEEEEeC--CCCC-eEEEEEeecCcccc---CCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeC
Q 031952 27 FGVAHIFASFNDTFIHVTD--LSGR-ETLVRITGGMKVKA---DRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATG 100 (150)
Q Consensus 27 ~~ilhI~~t~NNT~itlTD--~~G~-~~~~~SsG~~g~kk---~~rK~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~ 100 (150)
.+-|.|+.|.+++++.+.| ..|. ++.+.|+--+..+. .. .....||..+++.++++|.+.|+..|.+-.
T Consensus 32 kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~~~-~~N~~AA~~vG~llA~Ral~kGI~~vvfDr---- 106 (203)
T 3j21_O 32 KPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGH-CGNTPSAYLLGLLIGYKAKQAGIEEAILDI---- 106 (203)
T ss_dssp CCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCCSC-TTSHHHHHHHHHHSSSSTTSSCCCCCEEEC----
T ss_pred CCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhcccCC-CCcHHHHHHHHHHHHHHHHhCCCCEEEEec----
Confidence 4778888999999999996 6655 44333333322111 22 356788899999999999999999874333
Q ss_pred CCcccCCCC---Ch-HHHHHHHHhCCCeEEEEEeccCCCCCCCCCC
Q 031952 101 GNKTKTPGP---GA-QSALRALARSGMKIGRIEDVTPIPTDSTRRK 142 (150)
Q Consensus 101 g~~~kG~G~---gr-~~~lk~L~~~gl~I~~I~D~TpiphNGcR~k 142 (150)
.|+=. || .+++++....||+ +||+--|.|
T Consensus 107 ----gg~~y~~hgRV~Ala~gAre~GL~---------iPhs~~~fp 139 (203)
T 3j21_O 107 ----GLHPPVRGSSVFAVLKGAVDAGLN---------VPHSPEIFP 139 (203)
T ss_dssp ----CSSCCCTTSHHHHHHHHHHHHTCC---------CCCCSSCSC
T ss_pred ----CcceeccCcchhhhhhhcccCCee---------cccCCccCC
Confidence 33333 45 6677888888985 477766655
No 12
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=95.88 E-value=0.0076 Score=46.48 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=62.8
Q ss_pred eeeeEEEEEccCCCeEEEEeCCCCC-eEEEEEeecCcccc----CCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEee
Q 031952 25 HVFGVAHIFASFNDTFIHVTDLSGR-ETLVRITGGMKVKA----DRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAT 99 (150)
Q Consensus 25 ~~~~ilhI~~t~NNT~itlTD~~G~-~~~~~SsG~~g~kk----~~rK~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~ 99 (150)
...+-|.|+.|.+++...+.|..+. ++.+.|+-...+++ +. ...-.||..+++.++++|++.||+.| .|+ .
T Consensus 63 ~~rPRL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk~~l~~g~-~~n~~AA~~VG~liAeRA~e~GI~~V--vFD-R 138 (161)
T 3bbo_Q 63 PERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSS-SPTIEVAKKVGEVIASACLEKGITKV--AFD-R 138 (161)
T ss_dssp SSCCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCC-SSSHHHHHHHHHHSSSHHHHTSSCCC--CCC-C
T ss_pred CCCCEEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHHhhccccC-CCCHHHHHHHHHHHHHHHHHCCCCEE--EEe-C
Confidence 3356889999999999999877654 55544442222332 12 46678899999999999999999987 453 2
Q ss_pred CCCcccCCCCCh-HHHHHHHHhCCCe
Q 031952 100 GGNKTKTPGPGA-QSALRALARSGMK 124 (150)
Q Consensus 100 ~g~~~kG~G~gr-~~~lk~L~~~gl~ 124 (150)
+|.+-. || +++..++...||+
T Consensus 139 gg~~Yh----GRVkAladaaRe~GL~ 160 (161)
T 3bbo_Q 139 GGYPYH----GRVKALADAAREKGLQ 160 (161)
T ss_dssp SSSCSS----STTHHHHHHHTTTTCC
T ss_pred CCCcch----HHHHHHHHHHHHhCCc
Confidence 222222 34 5666777778875
No 13
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=95.87 E-value=0.003 Score=46.13 Aligned_cols=89 Identities=16% Similarity=0.197 Sum_probs=59.6
Q ss_pred eeeEEEEEccCCCeEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCccc
Q 031952 26 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTK 105 (150)
Q Consensus 26 ~~~ilhI~~t~NNT~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~k 105 (150)
..+-|.|+.|.++++..+.|..|..++.+.|.. .+ + . .....||+.+++.++++|.+.|++.|. |. .+|.+.
T Consensus 25 ~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~-el-~-~-~~n~~AA~~vG~llA~Ral~~GI~~vv--fD-rgg~~y- 96 (114)
T 2zjr_L 25 GRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSA-AL-K-S-GNKTDTAAAVGKALAAAAAEKGIKQVV--FD-RGSYKY- 96 (114)
T ss_dssp CSEEECCCTTSSCCCCCEEETTTTEECCCCCSC-SC-C-T-TCSSSSHHHHHHHHHHHHHTTCCCCCE--EC-CCSSCS-
T ss_pred CCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEch-Hh-c-C-CCCHHHHHHHHHHHHHHHHHCCCCEEE--Ee-cCCccc-
Confidence 356788999999999999988876554333332 23 2 2 344667889999999999999999874 52 222222
Q ss_pred CCCCCh-HHHHHHHHhCCCeE
Q 031952 106 TPGPGA-QSALRALARSGMKI 125 (150)
Q Consensus 106 G~G~gr-~~~lk~L~~~gl~I 125 (150)
=|| .++++++...||++
T Consensus 97 ---hgrV~Ala~~are~GL~f 114 (114)
T 2zjr_L 97 ---HGRVKALADAAREGGLDF 114 (114)
T ss_dssp ---CSHHHHHHHHHHHHC---
T ss_pred ---cHHHHHHHHHHHHhCCcC
Confidence 234 56777777778763
No 14
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=95.14 E-value=0.25 Score=41.28 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=68.8
Q ss_pred eeeeEEEEEccCCCeEEEEeCCC--CCeEEEEEee-cC---ccccCCCCCCHHHHHHHHHHHHHHHHHc-----------
Q 031952 25 HVFGVAHIFASFNDTFIHVTDLS--GRETLVRITG-GM---KVKADRDESSPYAAMLAAQDVSQRCKEL----------- 87 (150)
Q Consensus 25 ~~~~ilhI~~t~NNT~itlTD~~--G~~~~~~SsG-~~---g~kk~~rK~t~~Aa~~aa~~i~~~~~~~----------- 87 (150)
-+.+-|.|+.|..++++.+.|.. |..++++.+. -+ |.+.+ .....||+.++..+++++.+.
T Consensus 46 t~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~kyg~k~g--~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~ 123 (297)
T 2zkr_n 46 TPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVG--LTNYAAAYCTGLLLARRLLNRFGMDKIYEGQV 123 (297)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCSC--SSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCC
T ss_pred CCCceEEEEEecCcEEEEEEeccCCCCEEEEEeecCcccccccccC--CCcHHHHHHHHHHHHHHHHHhhccchhhcCcc
Confidence 34577888899999999999977 6655544333 22 22322 355778899999999999987
Q ss_pred ----------------CCcEEEEEEEeeCCCcccCCCCCh-HHHHHHHHhCCCeEEEEEeccCCCCCCCCCCC
Q 031952 88 ----------------GITALHIKLRATGGNKTKTPGPGA-QSALRALARSGMKIGRIEDVTPIPTDSTRRKG 143 (150)
Q Consensus 88 ----------------gi~~v~V~~~~~~g~~~kG~G~gr-~~~lk~L~~~gl~I~~I~D~TpiphNGcR~kK 143 (150)
|+..+.+=. ||.+..- | || .+++++....||. +||+-.|.|.
T Consensus 124 e~~g~~~~ve~~~~~~gi~~vvfDr---Gl~rytt-g-gRVfa~akGArDgGL~---------~Phs~~~fpg 182 (297)
T 2zkr_n 124 EVTGDEYNVESIDGQPGAFTCYLDA---GLARTTT-G-NKVFGALKGAVDGGLS---------IPHSTKRFPG 182 (297)
T ss_dssp SSSSCCCCCSSSCSSSCCCBEEEEC---TTSCCCT-T-CHHHHHHHHHHHTTCB---------CCCCGGGSCC
T ss_pred ccccccccccccccCCCceEEEEec---CCcccCC-C-chHHHHHHHHHhcCcc---------cCCCCccCCC
Confidence 666663333 2222200 1 23 6688888889986 5888777654
No 15
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=93.61 E-value=0.36 Score=40.43 Aligned_cols=107 Identities=17% Similarity=0.083 Sum_probs=68.5
Q ss_pred eeeeEEEEEccCCCeEEEEeCC--CCCe-EEEEEeecCcccc--CCCCCCHHHHHHHHHHHHHHHHHc--------CCcE
Q 031952 25 HVFGVAHIFASFNDTFIHVTDL--SGRE-TLVRITGGMKVKA--DRDESSPYAAMLAAQDVSQRCKEL--------GITA 91 (150)
Q Consensus 25 ~~~~ilhI~~t~NNT~itlTD~--~G~~-~~~~SsG~~g~kk--~~rK~t~~Aa~~aa~~i~~~~~~~--------gi~~ 91 (150)
.+.+-|.|+-|..++++.+.|. .|.. +.+.|+--+...+ .. .....||..++..++++|.+. |+..
T Consensus 46 spkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~k~~-~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e 124 (301)
T 4a17_M 46 TPKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVSTG-LASYAAAYATGLLLARRLLKQIGLDTVYAGQTK 124 (301)
T ss_dssp CCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTCCSC-TTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSS
T ss_pred CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhccccCC-CCcHHHHHHHHHHHHHHHHHhcCCcccccCccc
Confidence 4567888899999999999997 5744 4333332221111 12 345788899999999999987 7762
Q ss_pred -----------------EEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEeccCCCCCCCCCCC
Q 031952 92 -----------------LHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKG 143 (150)
Q Consensus 92 -----------------v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~TpiphNGcR~kK 143 (150)
..+.|. .|+.+.. .|--=.+++++....||. |||+--|.|.
T Consensus 125 ~~g~~~~ve~~~~~~~~f~~~LD-~Gl~rtt-~G~RVfaalKGA~DgGL~---------IPhs~~~fpg 182 (301)
T 4a17_M 125 VDGAYFNVDEDQKEKKPFKAILD-AGLVRTT-TGNRVFGVLKGACDGGIN---------IPHSESRFPG 182 (301)
T ss_dssp CCCSCCCGGGTCCSSCCCBCEEE-CTTSCCC-SSCHHHHHHHHHHHTTCB---------CCCCSSSSSS
T ss_pred cccceeecccccCCCCceEEEEe-cCCcccC-cccchhhhhhcccccCcc---------cCCCCccCCC
Confidence 124442 1222221 122226788888889997 5888766653
No 16
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=93.21 E-value=1.3 Score=36.92 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=69.0
Q ss_pred eeeeEEEEEccCCCeEEEEeCC--CCCeEEE-EEeecCcccc--CCCCCCHHHHHHHHHHHHHHHHHc--------CCcE
Q 031952 25 HVFGVAHIFASFNDTFIHVTDL--SGRETLV-RITGGMKVKA--DRDESSPYAAMLAAQDVSQRCKEL--------GITA 91 (150)
Q Consensus 25 ~~~~ilhI~~t~NNT~itlTD~--~G~~~~~-~SsG~~g~kk--~~rK~t~~Aa~~aa~~i~~~~~~~--------gi~~ 91 (150)
...+-|.|+.|..++++.+.|. .|..+++ .|+--+...+ .. .....||..++..++++|.+. |+..
T Consensus 46 t~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~k~~-~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e 124 (297)
T 3u5e_D 46 TPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHG-LTNWAAAYATGLLIARRTLQKLGLDETYKGVEE 124 (297)
T ss_dssp CCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTCCSC-TTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSS
T ss_pred CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhcccCCC-CCcHHHHHHHHHHHHHHHHHhhCCcccccCccc
Confidence 3577888889999999999997 5654443 4433332111 12 345788899999999999987 6654
Q ss_pred EE-----------------EEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEeccCCCCCCCCCC
Q 031952 92 LH-----------------IKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRK 142 (150)
Q Consensus 92 v~-----------------V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~TpiphNGcR~k 142 (150)
+. +.|. .|+.+.. .|--=.+++++....||. |||+--|.|
T Consensus 125 ~~g~~~~ve~~~~~~~~f~~~LD-vGl~rtt-tG~RVfaalKGA~DgGL~---------IPhs~~~fp 181 (297)
T 3u5e_D 125 VEGEYELTEAVEDGPRPFKVFLD-IGLQRTT-TGARVFGALKGASDGGLY---------VPHSENRFP 181 (297)
T ss_dssp CCCCCCCCCCCSSSCCCCBCEEE-CTTCCCC-TTCSHHHHHHHHHHHTCB---------CCCCSTTSS
T ss_pred cccceeccccccCCCCceeEEEe-cCCCccC-ccceehhhhhcccccCcc---------cCCCccccc
Confidence 11 4452 2222221 133336788988889987 688877665
No 17
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=84.59 E-value=5.4 Score=33.36 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=61.6
Q ss_pred cCCCeEEEEeCC--CCC-eEEEEEeecCcccc--CCCCCCHHHHHHHHHHHHHHHHHc--------CCcEEE--------
Q 031952 35 SFNDTFIHVTDL--SGR-ETLVRITGGMKVKA--DRDESSPYAAMLAAQDVSQRCKEL--------GITALH-------- 93 (150)
Q Consensus 35 t~NNT~itlTD~--~G~-~~~~~SsG~~g~kk--~~rK~t~~Aa~~aa~~i~~~~~~~--------gi~~v~-------- 93 (150)
|..++++.+.|. .|. ++.+.||--+...+ .. -...-||+.++..++++|.+. |+..+.
T Consensus 57 SNrhIyaQII~~~i~GD~tLaSAsS~EL~kyG~k~g-~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e~~g~~~~ve~ 135 (304)
T 3iz5_Q 57 TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVG-LTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEP 135 (304)
T ss_dssp CSSCCEEEEEEEETTEEEEEEEEETTTGGGGSCCSC-TTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSCCCSCCCSSCC
T ss_pred cCCcEEEEEEecCCCCCEEEEEEecCchhhcccCCC-CCcHHHHHHHHHHHHHHHHHhhCCccccCCccccccceecccc
Confidence 888999999986 574 44444443333222 12 245678899999999999987 776521
Q ss_pred --------EEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEeccCCCCCCCCCCC
Q 031952 94 --------IKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKG 143 (150)
Q Consensus 94 --------V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~TpiphNGcR~kK 143 (150)
+.|. .|+.+.. .|--=.+++++....||. |||+--|.|.
T Consensus 136 ~~~~~~f~~~LD-iGL~rtt-tG~RVfaalKGA~DgGL~---------IPhs~~~fpg 182 (304)
T 3iz5_Q 136 ADERRPFRALLD-VGLIRTT-TGNRVFGALKGALDGGLD---------IPHSDKRFAG 182 (304)
T ss_dssp SSCSCCCSCEEE-CTTCCCC-SSCHHHHHHHHHHTTTCC---------CCCCSSSCCC
T ss_pred cCCCCCceEEEe-cCCcccc-cCceeEEeeccccccCcc---------cCCCcccccC
Confidence 4442 1222221 122226688888889986 6998777764
No 18
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Probab=63.47 E-value=29 Score=22.79 Aligned_cols=56 Identities=11% Similarity=0.076 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEeccCCC
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIP 135 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~Tpip 135 (150)
+.-++.. +.+.+.+.+.+.|+..|.+.+. ..-..+++.+.+.|++.......++-|
T Consensus 102 g~Gig~~-ll~~~~~~~~~~g~~~i~l~~~-----------~~n~~a~~~y~k~GF~~~~~~~~~~~~ 157 (164)
T 4e0a_A 102 GGGIGRL-IFEAIISYGKAHQVDAIELDVY-----------DFNDRAKAFYHSLGMRCQKQTMELPLL 157 (164)
T ss_dssp SSSHHHH-HHHHHHHHHHHTTCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEEEEECC
T ss_pred cCChHHH-HHHHHHHHHHHcCCCEEEEEEE-----------cCCHHHHHHHHHcCCEEeceeccCCcc
Confidence 4456544 4466778888899999998882 345678888899999877666655544
No 19
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=43.86 E-value=57 Score=24.30 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q 031952 78 QDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 78 ~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~ 129 (150)
+.+++.+.++|+..|++....... +. -.+...+.+-+.+...|++|.++.
T Consensus 22 ~~~l~~~~~~G~~~vEl~~~~~~~-~~-~~~~~~~~~~~~~~~~gl~~~~~~ 71 (272)
T 2q02_A 22 EAFFRLVKRLEFNKVELRNDMPSG-SV-TDDLNYNQVRNLAEKYGLEIVTIN 71 (272)
T ss_dssp HHHHHHHHHTTCCEEEEETTSTTS-ST-TTTCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeecccccc-cc-ccccCHHHHHHHHHHcCCeEEech
Confidence 456677888999999987510000 00 012345666677888999999885
No 20
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=42.77 E-value=20 Score=27.46 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q 031952 78 QDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 78 ~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~ 129 (150)
+.+++.+.++|+..|++.. ..+....+.+.+.|...|+.|.++.
T Consensus 41 ~~~l~~~~~~G~~~vEl~~--------~~~~~~~~~~~~~l~~~gl~v~~~~ 84 (287)
T 3kws_A 41 NEKLDFMEKLGVVGFEPGG--------GGLAGRVNEIKQALNGRNIKVSAIC 84 (287)
T ss_dssp HHHHHHHHHTTCCEEECBS--------TTCGGGHHHHHHHHTTSSCEECEEE
T ss_pred HHHHHHHHHcCCCEEEecC--------CchHHHHHHHHHHHHHcCCeEEEEe
Confidence 4567788899999999888 4343445556666777899998874
No 21
>3eo4_A Uncharacterized protein MJ1062; APC60792.2,MJ_1062,methanocaldococcus jannaschii DSM 2661, S genomics, PSI-2; HET: MES PG6; 2.19A {Methanocaldococcus jannaschii}
Probab=40.76 E-value=78 Score=21.02 Aligned_cols=50 Identities=12% Similarity=0.144 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q 031952 67 ESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128 (150)
Q Consensus 67 K~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I 128 (150)
++.-++.. +...+.+.+.++|+..|.+.+. ..-..+++.+.+.|+.....
T Consensus 103 rg~Gig~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~g~ 152 (164)
T 3eo4_A 103 WGKHIGRH-SVSLVLKWLKNIGYKKAHARIL-----------ENNIRSIKLFESLGFKKTKK 152 (164)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEE
T ss_pred cCccHHHH-HHHHHHHHHHhCCCcEEEEEeC-----------CCCHHHHHHHHHCCCEEEee
Confidence 34456554 4456777788999999999882 44567889899999987654
No 22
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=40.45 E-value=56 Score=25.40 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCC---------hHHHHHHHHhCCCeEEEEE
Q 031952 78 QDVSQRCKELGITALHIKLRATGGNKTKTPGPG---------AQSALRALARSGMKIGRIE 129 (150)
Q Consensus 78 ~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~g---------r~~~lk~L~~~gl~I~~I~ 129 (150)
+.+.+.+.++|+..|++.+ ..+.+- .+.+-+.|...|+.|.++.
T Consensus 38 ~~~~~~a~~~G~~~vEl~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~i~~~~ 90 (316)
T 3qxb_A 38 RLAGLVRDDLGLEYVQYTY--------DLTDPWWPDIERDRRAIAYAKAFRKAGLTIESTF 90 (316)
T ss_dssp HHHHHHHHTSCCCEEEEET--------TTSCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeec--------cccCccccccchhhHHHHHHHHHHHcCCeEEEee
Confidence 3455667899999999987 444432 2345566778899998874
No 23
>1vhs_A Similar to phosphinothricin acetyltransferase; structural genomics, unknown function; 1.80A {Bacillus subtilis} SCOP: d.108.1.1
Probab=37.52 E-value=98 Score=21.22 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I 128 (150)
+.-++.. +.+.+.+.+.++|+..|.+.+. .....+++.+.+.|+.....
T Consensus 95 g~GiG~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~A~~~yek~GF~~~g~ 143 (175)
T 1vhs_A 95 GKGVGSY-LLQEALRIAPNLGIRSLMAFIF-----------GHNKPSLKLFEKHGFAEWGL 143 (175)
T ss_dssp SSSHHHH-HHHHHHHHGGGGTCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHhCCceEEEEEEe-----------cCCHHHHHHHHHCCCEEEeE
Confidence 4456444 4456777788899999999882 34567889889999986554
No 24
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=35.93 E-value=55 Score=24.71 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q 031952 78 QDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 78 ~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~ 129 (150)
+..++.+.++|+..|++.. - .+...+.+-+.|...|+++.++.
T Consensus 26 ~~~l~~~~~~G~~~vEl~~--------~-~~~~~~~~~~~l~~~gl~~~~~~ 68 (269)
T 3ngf_A 26 LERFRLAAEAGFGGVEFLF--------P-YDFDADVIARELKQHNLTQVLFN 68 (269)
T ss_dssp HHHHHHHHHTTCSEEECSC--------C-TTSCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEecC--------C-ccCCHHHHHHHHHHcCCcEEEEe
Confidence 4567778899999999876 1 23456677777888999998876
No 25
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP: d.108.1.1
Probab=35.59 E-value=99 Score=20.69 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D 130 (150)
+.-++.. +.+.+.+.+.++|+..|.+.+. ..-..+++.+.+.|++.....+
T Consensus 99 g~Gig~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~~~~~ 149 (170)
T 2ge3_A 99 NKGLGAR-LMRRTLDAAHEFGLHRIELSVH-----------ADNARAIALYEKIGFAHEGRAR 149 (170)
T ss_dssp TSSHHHH-HHHHHHHHHHHHTCCEEEEEEE-----------TTCHHHHHHHHHHTCEEEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHHCCceEEEEEEE-----------cCCHHHHHHHHHCCCEEEeEec
Confidence 4456544 4456777888899999999882 3346788888889998765443
No 26
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=35.58 E-value=71 Score=24.97 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCC--------ChHHHHHHHHhCCCeEEEEE
Q 031952 77 AQDVSQRCKELGITALHIKLRATGGNKTKTPGP--------GAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 77 a~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~--------gr~~~lk~L~~~gl~I~~I~ 129 (150)
.+.+++.+.++|+..|++....+.. .+-.+. ..+.+-+.|...||+|.++.
T Consensus 38 l~~~l~~aa~~G~~~VEl~~~~~~~--~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~~~ 96 (305)
T 3obe_A 38 MPNGLNRLAKAGYTDLEIFGYREDT--GKFGDYNPKNTTFIASKDYKKMVDDAGLRISSSH 96 (305)
T ss_dssp HHHHHHHHHHHTCCEEEECCBCTTT--CCBCCC----CCCBCHHHHHHHHHHTTCEEEEEB
T ss_pred HHHHHHHHHHcCCCEEEeccccccc--ccccCcCcccccccCHHHHHHHHHHCCCeEEEee
Confidence 3567888899999999988620000 001222 44566677788999999883
No 27
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum}
Probab=35.32 E-value=1.1e+02 Score=21.50 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q 031952 67 ESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128 (150)
Q Consensus 67 K~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I 128 (150)
++.-++.. +...+.+.+.++|+..|.+.+ -..-..+++.+.+.|+.....
T Consensus 132 ~g~Gig~~-ll~~l~~~a~~~g~~~i~l~v-----------~~~N~~a~~~y~k~GF~~~g~ 181 (209)
T 3pzj_A 132 RRTRLATE-AVFLLLKTAFELGYRRCEWRC-----------DSRNAASAAAARRFGFQFEGT 181 (209)
T ss_dssp TTSHHHHH-HHHHHHHHHHHTTCSEEEEEE-----------ETTCHHHHHHHHHHTCEEEEE
T ss_pred hcCCHHHH-HHHHHHHHHHHcCCcEEEEee-----------cCCCHHHHHHHHHCCCEEeee
Confidence 45577555 446677788889999999988 244568889899999876543
No 28
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=34.97 E-value=52 Score=24.48 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCcEEEEE-EEeeCCCcccCC-----CCChHHHHHHHHhCCCeEEEEEe
Q 031952 78 QDVSQRCKELGITALHIK-LRATGGNKTKTP-----GPGAQSALRALARSGMKIGRIED 130 (150)
Q Consensus 78 ~~i~~~~~~~gi~~v~V~-~~~~~g~~~kG~-----G~gr~~~lk~L~~~gl~I~~I~D 130 (150)
+.+++.+.++|+..|++. . ..+ ....+.+-+.|...|+.+.++.-
T Consensus 17 ~~~l~~~~~~G~~~vEl~~~--------~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 67 (278)
T 1i60_A 17 KLDLELCEKHGYDYIEIRTM--------DKLPEYLKDHSLDDLAEYFQTHHIKPLALNA 67 (278)
T ss_dssp HHHHHHHHHTTCSEEEEETT--------THHHHHTTSSCHHHHHHHHHTSSCEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEccH--------HHHHHHhccCCHHHHHHHHHHcCCCeeeecc
Confidence 456667778999999988 6 221 23445566777888999887753
No 29
>3g9k_S Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional C excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_S*
Probab=34.63 E-value=39 Score=25.51 Aligned_cols=20 Identities=20% Similarity=0.066 Sum_probs=16.3
Q ss_pred eEEEEeCCCCCeEEEEEeec
Q 031952 39 TFIHVTDLSGRETLVRITGG 58 (150)
Q Consensus 39 T~itlTD~~G~~~~~~SsG~ 58 (150)
|++++.|.+||.+...++-.
T Consensus 2 th~svvD~~GnaVS~T~Si~ 21 (177)
T 3g9k_S 2 THFVIIDRDGTVVSSTNTLS 21 (177)
T ss_dssp EEEEEECTTCCEEEEEEECS
T ss_pred eEEEEECCCCCEEEEEccCC
Confidence 78999999999877666544
No 30
>2jlm_A Putative phosphinothricin N-acetyltransferase; methionine sulfoximine; 2.35A {Acinetobacter baylyi}
Probab=34.22 E-value=1.1e+02 Score=21.05 Aligned_cols=49 Identities=6% Similarity=0.044 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I 128 (150)
+.-++.. +.+.+.+.+.++|+..|.+.+. ..-..+++.+.+.|+...-.
T Consensus 104 g~Gig~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~yek~GF~~~g~ 152 (182)
T 2jlm_A 104 GLGLSKH-LMNELIKRAVESEVHVMVGCID-----------ATNVASIQLHQKLGFIHSGT 152 (182)
T ss_dssp TSSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHHCCceEEEEEEe-----------CCCHHHHHHHHHCCCcEEEE
Confidence 4456444 4466778888899999998882 44568889889999876543
No 31
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=33.24 E-value=55 Score=22.11 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEEE
Q 031952 71 YAAMLAAQDVSQRCKELGITALHIKLR 97 (150)
Q Consensus 71 ~Aa~~aa~~i~~~~~~~gi~~v~V~~~ 97 (150)
.-|...-+-+++.++.+||+.+.|++.
T Consensus 60 eqakelleliarllqklgykdinvrvn 86 (96)
T 2jvf_A 60 EQAKELLELIARLLQKLGYKDINVRVN 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEc
Confidence 345556678888899999999999993
No 32
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family, phosphinothricin, methionine sulfone, methionine sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A 2j8n_A 2j8r_A* 1yvo_A
Probab=33.24 E-value=1.1e+02 Score=20.59 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q 031952 67 ESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128 (150)
Q Consensus 67 K~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I 128 (150)
++.-++.. +.+.+.+.|.++|+..|.+.+. ..-..+++.+.+.|+.....
T Consensus 95 rg~Gig~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~g~ 144 (172)
T 2j8m_A 95 RGKGLGVQ-LLQALIERARAQGLHVMVAAIE-----------SGNAASIGLHRRLGFEISGQ 144 (172)
T ss_dssp TTSSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEE
T ss_pred cCCCHHHH-HHHHHHHHHHHCCccEEEEEEc-----------CCCHHHHHHHHHCCCEEEee
Confidence 34456544 4466777888999999998872 33567888888899886544
No 33
>1on0_A YYCN protein; structural genomics, alpha-beta protein with anti-parallel B strands, PSI, protein structure initiative; 2.20A {Bacillus subtilis} SCOP: d.108.1.1
Probab=32.74 E-value=72 Score=21.52 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIG 126 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~ 126 (150)
+.-++.. +.+.+.+.+.++|+..|.+.+ ...-..+++...+.|++..
T Consensus 102 g~G~g~~-ll~~~~~~a~~~g~~~i~l~v-----------~~~N~~a~~~Y~k~GF~~~ 148 (158)
T 1on0_A 102 GKGYAKQ-ALAALDQAARSMGIRKLSLHV-----------FAHNQTARKLYEQTGFQET 148 (158)
T ss_dssp SSSHHHH-HHHHHHHHHHHHTCCEEEECC-----------CTTCHHHHHHHHHTTCCCC
T ss_pred CCCHHHH-HHHHHHHHHHHCCCCEEEEEE-----------ecCCHHHHHHHHHCCCEEE
Confidence 4456544 445677788889999998887 3445678888888898654
No 34
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=32.41 E-value=1.1e+02 Score=23.54 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeCCCcccCCCC--------ChHHHHHHHHhCCCeEEEEE
Q 031952 78 QDVSQRCKELGITALHIKLRATGGNKTKTPGP--------GAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 78 ~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~--------gr~~~lk~L~~~gl~I~~I~ 129 (150)
+.+++.+.++|+..|++.... ..+.. ..+.+.+.|...||+|.++.
T Consensus 18 ~~~l~~~~~~G~~~vEl~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 71 (340)
T 2zds_A 18 EEVCRLARDFGYDGLELACWG------DHFEVDKALADPSYVDSRHQLLDKYGLKCWAIS 71 (340)
T ss_dssp HHHHHHHHHHTCSEEEEESST------TTCCHHHHHHCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEecccc------ccCCccccccCHHHHHHHHHHHHHcCCeEEEee
Confidence 456677888999999987610 11221 12445667788999998874
No 35
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}
Probab=31.91 E-value=70 Score=27.46 Aligned_cols=58 Identities=14% Similarity=0.242 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEeccC
Q 031952 67 ESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 133 (150)
Q Consensus 67 K~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~Tp 133 (150)
..|-|-...+++.+++.. ...++...|.+ .|+|.=-..+.+.|.+.|.+|+.|.|.+-
T Consensus 195 ~aTg~Gv~~~~~~~~~~~-g~~l~gk~vaV--------qG~GnVG~~~a~~L~~~GakVVavsD~~G 252 (419)
T 3aoe_E 195 DAAGLGALLVLEALAKRR-GLDLRGARVVV--------QGLGQVGAAVALHAERLGMRVVAVATSMG 252 (419)
T ss_dssp CHHHHHHHHHHHHHHHHH-TCCCTTCEEEE--------ECCSHHHHHHHHHHHHTTCEEEEEEETTE
T ss_pred cchHHHHHHHHHHHHHhc-CCCccCCEEEE--------ECcCHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 456666666666555542 23445566788 78886445555778889999999999853
No 36
>2ae6_A Acetyltransferase, GNAT family; GCN5-related N-acetyltransferase (GNAT), alpha-beta, structu genomics, PSI, protein structure initiative; HET: GOL; 2.19A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=31.70 E-value=1.2e+02 Score=20.43 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D 130 (150)
+.-++.. +.+.+.+.+.+.|+..|.+.+ ......+++...+.|+.......
T Consensus 95 g~GiG~~-ll~~~~~~a~~~g~~~i~l~v-----------~~~N~~A~~~Yek~GF~~~~~~~ 145 (166)
T 2ae6_A 95 DQGIGGS-LLSYIKDMAEISGIHKLSLRV-----------MATNQEAIRFYEKHGFVQEAHFK 145 (166)
T ss_dssp TSSHHHH-HHHHHHHHHHHHTCCEEEEEE-----------ETTCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHHCCCCEEEEEe-----------ecCCHHHHHHHHHcCCEEeeEEc
Confidence 4456444 445677788889999999988 23456788988999998765433
No 37
>3g8w_A Lactococcal prophage PS3 protein 05; APC61042, acetyltransferase, staphylococcus epidermidis ATCC structural genomics; HET: NHE FLC; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=31.62 E-value=1.1e+02 Score=20.11 Aligned_cols=50 Identities=20% Similarity=0.126 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~ 129 (150)
+.-++.. +.+.+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+......
T Consensus 95 g~Gig~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~g~~ 144 (169)
T 3g8w_A 95 DEIVNRE-LINHIIQYAKEQNIETLMIAIA-----------SNNISAKVFFSSIGFENLAFE 144 (169)
T ss_dssp CHHHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHTTTCEEEEEE
T ss_pred CCcHHHH-HHHHHHHHHHHCCCCEEEEEEe-----------cCCHHHHHHHHHcCCEEeeee
Confidence 4456544 4466778888999999998882 334578888899999876553
No 38
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=31.40 E-value=51 Score=25.18 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeCCCcccC-CCCChHHHHHHHHhCCCeEEEEEe
Q 031952 78 QDVSQRCKELGITALHIKLRATGGNKTKT-PGPGAQSALRALARSGMKIGRIED 130 (150)
Q Consensus 78 ~~i~~~~~~~gi~~v~V~~~~~~g~~~kG-~G~gr~~~lk~L~~~gl~I~~I~D 130 (150)
+.+++.+.++|+..|++.. .. .....+.+.+.|...|+++.++.=
T Consensus 44 ~~~l~~~~~~G~~~vEl~~--------~~~~~~~~~~~~~~l~~~gl~~~~~~~ 89 (290)
T 2zvr_A 44 RKGMELAKRVGYQAVEIAV--------RDPSIVDWNEVKILSEELNLPICAIGT 89 (290)
T ss_dssp HHHHHHHHHHTCSEEEEEC--------SCGGGSCHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHhCCCEEEEcC--------CCcchhhHHHHHHHHHHcCCeEEEEec
Confidence 5667788889999999987 22 223456667777888999988853
No 39
>3f8k_A Protein acetyltransferase; GCN5-related N-acetyltransferase; HET: COA; 1.84A {Sulfolobus solfataricus P2}
Probab=30.62 E-value=1.1e+02 Score=19.87 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGR 127 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~ 127 (150)
+.-++.. +.+.+.+.+.+.|+..+.+.+ ...-..+++.+.+.|++...
T Consensus 87 g~Gig~~-ll~~~~~~~~~~g~~~i~l~~-----------~~~N~~a~~~y~k~GF~~~~ 134 (160)
T 3f8k_A 87 TLGIGTL-LVKTLIEEAKKSGLSTVKFYT-----------LPENTPMIKIGRKLGFKMRF 134 (160)
T ss_dssp TSSHHHH-HHHHHHHHHHHTTCSEEEEEE-----------CTTCHHHHHHHHHHTCEEEE
T ss_pred CCCHHHH-HHHHHHHHHHHcCceEEEEEE-----------cccCHHHHHHHHHcCCEEEe
Confidence 3345444 446677788889999999888 34456788888888987653
No 40
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=30.57 E-value=88 Score=24.04 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q 031952 78 QDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 78 ~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~ 129 (150)
+.+++.+.++|+..|++.+... .++ ...+...+.+-+.|...||+|.++.
T Consensus 39 ~~~l~~a~~~G~~~vEl~~~~~-~~~-~~~~~~~~~~~~~l~~~gl~i~~~~ 88 (296)
T 2g0w_A 39 PKRVKVAAENGFDGIGLRAENY-VDA-LAAGLTDEDMLRILDEHNMKVTEVE 88 (296)
T ss_dssp HHHHHHHHHTTCSEEEEEHHHH-HHH-HHTTCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeCHHHH-HHH-HhcCCcHHHHHHHHHHcCCceEeeh
Confidence 4566778889999999986100 000 0013445666777888999999886
No 41
>3d8p_A Acetyltransferase of GNAT family; NP_373092.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 2.20A {Staphylococcus aureus subsp}
Probab=30.53 E-value=1.1e+02 Score=19.76 Aligned_cols=49 Identities=16% Similarity=0.090 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I 128 (150)
+.-++.. +...+.+.+.+.|+..|.+.+ ...-..+++.+.+.|+.....
T Consensus 92 g~Gig~~-ll~~~~~~a~~~g~~~i~l~~-----------~~~n~~a~~~y~k~GF~~~~~ 140 (163)
T 3d8p_A 92 NLKIGKK-LLDKVIMTCKEQNIDGIYLGT-----------IDKFISAQYFYSNNGFREIKR 140 (163)
T ss_dssp TTTHHHH-HHHHHHHHHHHTTCCEEEEEE-----------CTTCHHHHHHHHHTTCEEECG
T ss_pred cCCHHHH-HHHHHHHHHHHCCCeEEEEEe-----------cCCCHHHHHHHHHCCCEEeee
Confidence 3456544 445677788889999999888 233457788889999987654
No 42
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=30.15 E-value=59 Score=26.94 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEeccC
Q 031952 75 LAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 133 (150)
Q Consensus 75 ~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~Tp 133 (150)
.+++.++..|.+.|.. ++|++.-+ +-...||.++ +.|...|+.+..|.|..-
T Consensus 152 ~tvl~~l~~A~~~gk~-~~V~v~Et-----RP~~qGrltA-~eL~~~GI~vtlI~Dsa~ 203 (338)
T 3a11_A 152 KAAISVMKTAWEQGKD-IKVIVTET-----RPKWQGKITA-KELASYGIPVIYVVDSAA 203 (338)
T ss_dssp HHHHHHHHHHHHTTCC-CEEEEECC-----TTTTHHHHHH-HHHHHTTCCEEEECGGGT
T ss_pred HHHHHHHHHHHHCCCe-EEEEEeCC-----CCchhhHHHH-HHHHhCCCCEEEEehHHH
Confidence 3556677778777754 66677433 5566787776 668999999999999643
No 43
>2cy2_A TTHA1209, probable acetyltransferase; structural genomics, unknown function, NPPSFA; HET: ACO; 2.00A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 1wk4_A*
Probab=29.19 E-value=1.2e+02 Score=19.66 Aligned_cols=51 Identities=4% Similarity=-0.080 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D 130 (150)
+.-++.. +...+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+......+
T Consensus 102 g~Gig~~-ll~~~~~~~~~~g~~~i~l~~~-----------~~n~~a~~~y~k~Gf~~~~~~~ 152 (174)
T 2cy2_A 102 RKGLGRA-LFHEGARLLQAEGYGRMLVWVL-----------KENPKGRGFYEHLGGVLLGERE 152 (174)
T ss_dssp SSSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEE
T ss_pred CcCHHHH-HHHHHHHHHHhCCCceEEEEEE-----------CCChhHHHHHHHcCCeeeceEE
Confidence 3345444 4456777788899999988882 3346778888999998776444
No 44
>3fix_A N-acetyltransferase; termoplasma acidophilum, structural GEN PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.30A {Thermoplasma acidophilum} PDB: 3f0a_A* 3k9u_A* 3ne7_A*
Probab=28.83 E-value=1.4e+02 Score=20.23 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q 031952 67 ESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128 (150)
Q Consensus 67 K~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I 128 (150)
++.-++.. +.+.+.+.+.+.|+..|.+.+. ..-..+++.+.+.|++....
T Consensus 123 rg~Gig~~-Ll~~~~~~a~~~g~~~i~l~v~-----------~~n~~a~~~y~k~GF~~~~~ 172 (183)
T 3fix_A 123 THKKIGKT-LLLEAEKIMKKKGILECRLYVH-----------RQNSVGFSFYYKNGFKVEDT 172 (183)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEE
T ss_pred cCCCHHHH-HHHHHHHHHHHcCCceEEEEEe-----------cCCHHHHHHHHHcCCEEecc
Confidence 34466544 4466788888899999988882 34567888889999987644
No 45
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Probab=28.78 E-value=52 Score=28.41 Aligned_cols=61 Identities=11% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEeccC
Q 031952 64 DRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 133 (150)
Q Consensus 64 ~~rK~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~Tp 133 (150)
.+-..|.|....+++.+++.. ...+....|.+ .|+|.=-..+.+.|...|.+|+.|.|..-
T Consensus 195 ~r~~aTg~Gv~~~~~~~~~~~-g~~l~g~~vaV--------qG~GnVG~~aa~~l~e~GakVVavsD~~G 255 (424)
T 3k92_A 195 GRETATAQGVTICIEEAVKKK-GIKLQNARIII--------QGFGNAGSFLAKFMHDAGAKVIGISDANG 255 (424)
T ss_dssp TTTTHHHHHHHHHHHHHHHHT-TCCGGGCEEEE--------ECCSHHHHHHHHHHHHHTCEEEEEECSSC
T ss_pred CCcccHHHHHHHHHHHHHHHc-CCCcccCEEEE--------ECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 333556666666666555543 33456677888 78886334445667778999999999874
No 46
>2fe7_A Probable N-acetyltransferase; structural genomics, pseudomonas aerugi PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa ucbpp-pa14} SCOP: d.108.1.1
Probab=28.12 E-value=1.2e+02 Score=19.57 Aligned_cols=46 Identities=9% Similarity=-0.033 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKI 125 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I 125 (150)
+.-++.. +...+.+.+.+.|+..|.+.+. .....+++.+.+.|+..
T Consensus 102 g~Gig~~-ll~~~~~~~~~~g~~~i~l~~~-----------~~n~~a~~~y~k~Gf~~ 147 (166)
T 2fe7_A 102 GVGAGRR-LLRELAREAVANDCGRLEWSVL-----------DWNQPAIDFYRSIGALP 147 (166)
T ss_dssp C--HHHH-HHHHHHHHHHHTTCSEEEEEEE-----------TTCHHHHHHHHHTTCEE
T ss_pred CccHHHH-HHHHHHHHHHHCCCCEEEEEEc-----------cCCHHHHHHHHHcCCeE
Confidence 4456544 4456777888899999998882 33467788888889865
No 47
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=28.05 E-value=1.2e+02 Score=19.34 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHH-----cCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEE
Q 031952 70 PYAAMLAAQDVSQRCKE-----LGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGR 127 (150)
Q Consensus 70 ~~Aa~~aa~~i~~~~~~-----~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~ 127 (150)
..-|..+.+.++..+.+ .|+..|.|.- |.|-....|...=|.++.+.|.+.++...+
T Consensus 10 v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~-GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e 71 (82)
T 3fau_A 10 VDEALEHLMRVLEKKTEEFKQNGGKPYLSVIT-GRGNHSQGGVARIKPAVIKYLISHSFRFSE 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC-CC---------CHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCceEEEEEE-CCCCCCCCCcchHHHHHHHHHHhCCCceee
Confidence 44555566666677765 8999888766 311111111122456777888888887644
No 48
>2i79_A Acetyltransferase, GNAT family; acetyl coenzyme *A, structur genomics, PSI-2, protein structure initiative; HET: ACO; 2.10A {Streptococcus pneumoniae}
Probab=27.55 E-value=1.4e+02 Score=20.02 Aligned_cols=50 Identities=12% Similarity=0.282 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcC-CcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELG-ITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~g-i~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~ 129 (150)
+.-++.. +.+.+.+.|.+.+ +..|.+.+. ..-..+++.+.+.|+....+.
T Consensus 100 g~Gig~~-ll~~~~~~a~~~~~~~~i~l~v~-----------~~N~~A~~~yek~GF~~~g~~ 150 (172)
T 2i79_A 100 NNGLGSL-LLEEAIEWAQASGILRRLQLTVQ-----------TRNQAAVHLYQKHGFVIEGSQ 150 (172)
T ss_dssp TSSHHHH-HHHHHHHHHHHTSSCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHhcCCeEEEEEEEE-----------CCCHHHHHHHHHCCCEEEeEE
Confidence 4456444 4466777888888 999999882 445688898999999876654
No 49
>1mk4_A Hypothetical protein YQJY; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: d.108.1.1
Probab=27.50 E-value=1.3e+02 Score=19.45 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEE
Q 031952 67 ESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGR 127 (150)
Q Consensus 67 K~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~ 127 (150)
++.-++.. +...+.+.+.+.|+..+.+.+ -..-..+++.+.+.|+....
T Consensus 81 rg~Gig~~-ll~~~~~~~~~~g~~~i~~~~-----------~~~N~~a~~~y~k~Gf~~~~ 129 (157)
T 1mk4_A 81 RKMQIGKQ-LYDVFIETVKQRGCTRVKCVT-----------SPVNKVSIAYHTKLGFDIEK 129 (157)
T ss_dssp CHHHHHHH-HHHHHHHHHHTTTCCEEEEEE-----------CTTCHHHHHHHHHTTCEECC
T ss_pred cCCCHHHH-HHHHHHHHHHHCCCcEEEEEE-----------cCCCHHHHHHHHHcCCEEcC
Confidence 45566555 445677788889999998888 23455778888889998765
No 50
>3i9s_A Integron cassette protein; oyster POND, woods HOLE, acetyltransferase, structural genomics, PSI-2, protein structure initiative; 2.20A {Vibrio cholerae}
Probab=27.49 E-value=1.4e+02 Score=20.12 Aligned_cols=47 Identities=6% Similarity=-0.036 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIG 126 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~ 126 (150)
+.-++.. +.+.+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+...
T Consensus 117 g~Gig~~-ll~~~~~~a~~~g~~~i~l~~~-----------~~N~~a~~~y~k~GF~~~ 163 (183)
T 3i9s_A 117 GKGIGLQ-LMKHLATIAITHNCQRLDWTAE-----------STNPTAGKFYKSIGASLI 163 (183)
T ss_dssp TSCHHHH-HHHHHHHHHHHTTEEEEEEEEE-----------TTCHHHHHHHHHTTCEEC
T ss_pred CCCHHHH-HHHHHHHHHHHcCCCEEEEEEe-----------cCChHHHHHHHHcCCcee
Confidence 4456554 4466778888899999988882 445677888888898754
No 51
>3dr6_A YNCA; acetyltransferase, csgid target, essential gene, IDP00086, structural genomics, center for STRU genomics of infectious diseases; HET: MSE; 1.75A {Salmonella typhimurium} SCOP: d.108.1.1 PDB: 3dr8_A*
Probab=26.64 E-value=1.3e+02 Score=19.40 Aligned_cols=51 Identities=6% Similarity=0.082 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D 130 (150)
+.-++.. +...+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+......+
T Consensus 96 g~Gig~~-ll~~~~~~~~~~g~~~i~~~~~-----------~~n~~a~~~y~k~Gf~~~~~~~ 146 (174)
T 3dr6_A 96 GKGLGRK-LLSRLIDEARRCGKHVMVAGIE-----------SQNAASIRLHHSLGFTVTAQMP 146 (174)
T ss_dssp TSSHHHH-HHHHHHHHHHHTTCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEE
T ss_pred cCCHHHH-HHHHHHHHHHHcCCCEEEEEee-----------cCCHHHHHHHHhCCCEEEEEcc
Confidence 3346444 4466777888999999988882 2346778888999998765543
No 52
>3pp9_A Putative streptothricin acetyltransferase; toxin production resistance, infectious diseases, structural genomics; HET: MSE ACO; 1.60A {Bacillus anthracis}
Probab=26.50 E-value=1.5e+02 Score=20.00 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~ 129 (150)
+.-++.. +...+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+......
T Consensus 114 g~Gig~~-ll~~~~~~~~~~g~~~i~~~~~-----------~~N~~a~~~y~k~Gf~~~~~~ 163 (187)
T 3pp9_A 114 TLGVGKR-LIAQAKQWAKEGNMPGIMLETQ-----------NNNVAACKFYEKCGFVIGGFD 163 (187)
T ss_dssp TSSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEE
T ss_pred cCCHHHH-HHHHHHHHHHHCCCCEEEEEEe-----------cCCHHHHHHHHHCCCEEeceE
Confidence 4456444 4466778888899999988882 334677888899999887654
No 53
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=26.24 E-value=75 Score=24.75 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q 031952 78 QDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 78 ~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~ 129 (150)
+..++.+.++|+..|++..... + .-.+.-.+.+-+.|...||+|.++.
T Consensus 32 ~~~l~~~a~~G~~~VEl~~~~~-~---~~~~~~~~~~~~~l~~~GL~v~~~~ 79 (303)
T 3l23_A 32 AANLRKVKDMGYSKLELAGYGK-G---AIGGVPMMDFKKMAEDAGLKIISSH 79 (303)
T ss_dssp HHHHHHHHHTTCCEEEECCEET-T---EETTEEHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEeccccC-c---ccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 4567788899999999875210 0 0123335666677888999999875
No 54
>1u6m_A Acetyltransferase, GNAT family; structural genomics, PSI, protein structure initiative; 2.40A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=26.18 E-value=1.3e+02 Score=20.93 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D 130 (150)
+.-++.++. +.+.+.|++.|+..|.+.+. .....+++...+.|++......
T Consensus 126 g~GiG~~Ll-~~~~~~a~~~g~~~i~L~v~-----------~~N~~A~~fY~k~GF~~~~~~~ 176 (199)
T 1u6m_A 126 GMGIGSKLL-DALPEVAKASGKQALGLNVD-----------FDNPGARKLYASKGFKDVTTMT 176 (199)
T ss_dssp TSSHHHHHH-HTHHHHHHTTTCSEEEEEEE-----------TTCHHHHHHHHTTTCEEEEEEE
T ss_pred CCCHHHHHH-HHHHHHHHHcCCCEEEEEEe-----------cCCHHHHHHHHHCCCEEccEEE
Confidence 334544444 56778888999999998882 3356788878889998766543
No 55
>3igr_A Ribosomal-protein-S5-alanine N-acetyltransferase; fisch MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.00A {Vibrio fischeri} SCOP: d.108.1.0
Probab=26.17 E-value=1.5e+02 Score=19.74 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHH-HHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q 031952 68 SSPYAAMLAAQDVSQRC-KELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~-~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~ 129 (150)
+.-++.. +...+.+.+ .++|+..|.+.+ -..-..+++.+.+.|+......
T Consensus 109 g~Gig~~-ll~~~~~~a~~~~g~~~i~~~v-----------~~~N~~a~~~y~k~GF~~~g~~ 159 (184)
T 3igr_A 109 GKGIMRR-AVNVTIDWMFKAQNLHRIMAAY-----------IPRNEKSAKVLAALGFVKEGEA 159 (184)
T ss_dssp TSSHHHH-HHHHHHHHHHHTSCCSEEEEEE-----------CTTCHHHHHHHHHTTCEEEEEE
T ss_pred cCcHHHH-HHHHHHHHHHhhCCceEEEEEe-----------cCCCHHHHHHHHHcCCEeeeee
Confidence 4456554 445567777 778999999988 3445688898999999866543
No 56
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=26.01 E-value=70 Score=23.68 Aligned_cols=42 Identities=7% Similarity=0.147 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q 031952 79 DVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 79 ~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~ 129 (150)
..++.+.++|+..|++.. + .+...+.+-+.|...|+++.++.
T Consensus 19 ~~l~~~~~~G~~~vEl~~--~-------~~~~~~~~~~~l~~~gl~~~~~~ 60 (260)
T 1k77_A 19 ERFAAARKAGFDAVEFLF--P-------YNYSTLQIQKQLEQNHLTLALFN 60 (260)
T ss_dssp GHHHHHHHHTCSEEECSC--C-------TTSCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhCCCEEEecC--C-------CCCCHHHHHHHHHHcCCceEEEe
Confidence 445667788999998876 1 23345666677888999999874
No 57
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A
Probab=25.91 E-value=70 Score=27.69 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEeccCCC
Q 031952 67 ESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIP 135 (150)
Q Consensus 67 K~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~Tpip 135 (150)
..|-|-...+++.+++.. ...++...|.+ .|||.=-..+.+.|...|.+|+.|.|..-.-
T Consensus 212 ~aTg~Gv~~~~~~~~~~~-g~~l~g~~vaV--------qGfGnVG~~~a~~L~e~GakvVavsD~~G~i 271 (440)
T 3aog_A 212 DATGRGVFITAAAAAEKI-GLQVEGARVAI--------QGFGNVGNAAARAFHDHGARVVAVQDHTGTV 271 (440)
T ss_dssp THHHHHHHHHHHHHHHHH-TCCSTTCEEEE--------ECCSHHHHHHHHHHHHTTCEEEEEECSSCEE
T ss_pred cchHHHHHHHHHHHHHhc-CCCccCCEEEE--------eccCHHHHHHHHHHHHCCCEEEEEEcCCcEE
Confidence 456666666666555542 23455677788 7888634445577888999999999986433
No 58
>1s3z_A Aminoglycoside 6'-N-acetyltransferase; GNAT, aminoglycoside ribostamycin; HET: COA RIO; 2.00A {Salmonella enteritidis} SCOP: d.108.1.1 PDB: 1s5k_A* 1s60_A* 2vbq_A*
Probab=25.70 E-value=1.5e+02 Score=19.54 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEE
Q 031952 69 SPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGR 127 (150)
Q Consensus 69 t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~ 127 (150)
.-++.. +.+.+.+.+.+.|+..|.+.+ ...-..+++.+.+.|+....
T Consensus 110 ~Gig~~-ll~~~~~~~~~~g~~~i~l~~-----------~~~N~~a~~~y~k~GF~~~~ 156 (165)
T 1s3z_A 110 RGVAKQ-LIAAVQRWGTNKGCREMASDT-----------SPENTISQKVHQALGFEETE 156 (165)
T ss_dssp SSHHHH-HHHHHHHHHHHTTCSEEEEEE-----------CTTCHHHHHHHHHTTCEEEE
T ss_pred CcHHHH-HHHHHHHHHHHCCCCEEEEec-----------CcCCHHHHHHHHHcCCeEee
Confidence 345444 445677788889999998888 23446788888889987654
No 59
>2q7b_A Acetyltransferase, GNAT family; NP_689019.1, structural GEN joint center for structural genomics, JCSG; HET: MSE FLC; 2.00A {Streptococcus agalactiae 2603V}
Probab=25.10 E-value=1.7e+02 Score=19.98 Aligned_cols=47 Identities=6% Similarity=-0.065 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q 031952 70 PYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128 (150)
Q Consensus 70 ~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I 128 (150)
-++.. +...+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+.....
T Consensus 113 Gig~~-ll~~~~~~a~~~g~~~i~l~~~-----------~~N~~a~~~y~k~GF~~~~~ 159 (181)
T 2q7b_A 113 RLGRK-LFERFMLFARASKFTRIVLDTP-----------EKEKRSHFFYENQGFKQITR 159 (181)
T ss_dssp CHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHTTTCEEECT
T ss_pred cHHHH-HHHHHHHHHHHCCCcEEEEEec-----------CCCHHHHHHHHHCCCEEeee
Confidence 45444 4456777888899999998882 33457788888899976543
No 60
>2vzy_A RV0802C; transferase, GCN5-related N-acetyltransferase, succinyltransferase; HET: FLC; 2.00A {Mycobacterium tuberculosis} PDB: 2vzz_A*
Probab=25.06 E-value=1.8e+02 Score=20.36 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHHHH-cCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q 031952 68 SSPYAAMLAAQDVSQRCKE-LGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~-~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D 130 (150)
+.-++.. +...+.+.+.+ +|+..|.+.+. ..-..+++.+.+.|+.......
T Consensus 119 gkGig~~-ll~~l~~~a~~~~g~~~i~~~v~-----------~~N~~a~~~y~k~GF~~~g~~~ 170 (218)
T 2vzy_A 119 GHGYGTE-MRAAVLYFAFAELEAQVATSRSF-----------VDNPASIAVSRRNGYRDNGLDR 170 (218)
T ss_dssp TSSHHHH-HHHHHHHHHHHTSCCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHhhCCceEEEEEec-----------cCCHHHHHHHHHCCCEEeeeee
Confidence 4456544 44567777776 89999999882 3456788889999998665443
No 61
>1z4e_A Transcriptional regulator; nysgxrc target T2017, GNAT fold, structural genomics, PSI, P structure initiative; 2.00A {Bacillus halodurans} SCOP: d.108.1.1
Probab=25.05 E-value=1.5e+02 Score=19.36 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q 031952 67 ESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128 (150)
Q Consensus 67 K~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I 128 (150)
++.-++... .+.+.+.+.+.|+..|.+.+. .....+++...+.|++....
T Consensus 98 rg~GiG~~L-l~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~Y~k~GF~~~~~ 147 (153)
T 1z4e_A 98 RGQGIGSQL-VCWAIERAKERGCHLIQLTTD-----------KQRPDALRFYEQLGFKASHE 147 (153)
T ss_dssp TTSSHHHHH-HHHHHHHHHHTTEEEEEEEEE-----------TTCTTHHHHHHHHTCEEEEE
T ss_pred cCCCHHHHH-HHHHHHHHHHcCCCEEEEEEc-----------cCChHHHHHHHHcCCceece
Confidence 344565554 456777888999999988872 22345667677789877653
No 62
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=25.02 E-value=1.4e+02 Score=23.47 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=33.1
Q ss_pred HHHHHHHHHc-CCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q 031952 78 QDVSQRCKEL-GITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130 (150)
Q Consensus 78 ~~i~~~~~~~-gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D 130 (150)
+..++.+.++ |+..|++.+. -......+.+-+.+...|++|..+.=
T Consensus 36 ~e~l~~aa~~~G~~~VEl~~~-------~~~~~~~~~l~~~l~~~Gl~i~~~~~ 82 (333)
T 3ktc_A 36 IDQINAAKEVGELSYVDLPYP-------FTPGVTLSEVKDALKDAGLKAIGITP 82 (333)
T ss_dssp HHHHHHHHHHSSEEEEEEEES-------CSTTCCHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEecCC-------CcchhHHHHHHHHHHHcCCeEEEEec
Confidence 4567788889 9999999871 11234456666777888999987753
No 63
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A 4e8o_A
Probab=24.94 E-value=1.6e+02 Score=19.60 Aligned_cols=48 Identities=13% Similarity=0.038 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGR 127 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~ 127 (150)
+.-++.. +.+.+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+....
T Consensus 109 g~Gig~~-Ll~~~~~~a~~~g~~~i~l~~~-----------~~N~~a~~~y~k~GF~~~~ 156 (166)
T 4evy_A 109 RSGVATM-LIRQAEVWAKQFSCTEFASDAA-----------LDNVISHAMHRSLGFQETE 156 (166)
T ss_dssp TSSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEE
T ss_pred cCCHHHH-HHHHHHHHHHHcCCCEEEEecC-----------CCCHHHHHHHHHcCCEecc
Confidence 4456554 4466778889999999988882 3356778888889987643
No 64
>2i6c_A Putative acetyltransferase; GNAT family, structural genomic, structur genomics, PSI-2, protein structure initiative; HET: MSE EPE; 1.30A {Pseudomonas aeruginosa} SCOP: d.108.1.1 PDB: 3pgp_A*
Probab=24.41 E-value=1.5e+02 Score=19.08 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHHHHH-cCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q 031952 68 SSPYAAMLAAQDVSQRCKE-LGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~-~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D 130 (150)
+.-++.. +...+.+.+.+ .|+..|.+.+. ..-..+++.+.+.|+.......
T Consensus 89 g~Gig~~-l~~~~~~~~~~~~g~~~i~l~~~-----------~~n~~a~~~y~k~Gf~~~~~~~ 140 (160)
T 2i6c_A 89 GLGVARY-LIGVMENLAREQYKARLMKISCF-----------NANAAGLLLYTQLGYQPRAIAE 140 (160)
T ss_dssp TTTHHHH-HHHHHHHHHHHHHCCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHhhCCccEEEEEEe-----------cCCHHHHHHHHHcCCEEccccc
Confidence 4456544 44567778888 79999998882 3356788888999998776543
No 65
>2oh1_A Acetyltransferase, GNAT family; YP_013287.1, structural genom joint center for structural genomics, JCSG, protein structu initiative; HET: MSE UNL; 1.46A {Listeria monocytogenes str}
Probab=24.34 E-value=1.6e+02 Score=19.47 Aligned_cols=50 Identities=6% Similarity=0.045 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~ 129 (150)
+.-++.. +.+.+.+.+.+.|+..|.+.+ ......+++.+.+.|+......
T Consensus 117 g~Gig~~-ll~~~~~~a~~~g~~~i~l~~-----------~~~N~~a~~~y~k~GF~~~~~~ 166 (179)
T 2oh1_A 117 GISLSKQ-MIYFAEKLGIEMSVPFIRLDC-----------IESNETLNQMYVRYGFQFSGKK 166 (179)
T ss_dssp TSCHHHH-HHHHHHHHHHHTTCCEEEEEE-----------ETTCHHHHHHHHHTTCEEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHHcCCCEEEEEe-----------cCCcHHHHHHHHHCCCEEeccc
Confidence 3445444 445677788889999998888 2445677888888999876543
No 66
>2z10_A Ribosomal-protein-alanine acetyltransferase; alpha/beta protein, acyltransferase, structural genomics, NPPSFA; HET: IYR; 1.77A {Thermus thermophilus} PDB: 2z0z_A* 2z11_A* 2zxv_A*
Probab=23.92 E-value=1.8e+02 Score=19.85 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHHc-CCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q 031952 68 SSPYAAMLAAQDVSQRCKEL-GITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~-gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D 130 (150)
+.-++.. +...+.+.+.+. |+..|.+.+. ..-..+++.+.+.|+.......
T Consensus 102 g~Gig~~-ll~~~~~~a~~~~g~~~i~~~v~-----------~~N~~a~~~y~k~GF~~~g~~~ 153 (194)
T 2z10_A 102 GSPANKE-AKYLLLRHAFEVLRAERVQFKVD-----------LRNERSQRALEALGAVREGVLR 153 (194)
T ss_dssp TSSHHHH-HHHHHHHHHHHTSCCSEEEEEEE-----------TTCHHHHHHHHHHTCEEEEEEE
T ss_pred CCcHHHH-HHHHHHHHHHhhCCceEEEEEec-----------CCCHHHHHHHHHcCCcEEEecc
Confidence 4456554 445566777665 9999998882 3456788888889997655443
No 67
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=23.68 E-value=1.5e+02 Score=22.06 Aligned_cols=44 Identities=14% Similarity=-0.022 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeCCCcccCC--CCCh---HHHHHHHHhCCCeEEEEE
Q 031952 78 QDVSQRCKELGITALHIKLRATGGNKTKTP--GPGA---QSALRALARSGMKIGRIE 129 (150)
Q Consensus 78 ~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~--G~gr---~~~lk~L~~~gl~I~~I~ 129 (150)
+.+++.+.++|+..|++.. ..+ +..- +.+.+.|...|+.|.++.
T Consensus 33 ~~~l~~~~~~G~~~vEl~~--------~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 81 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKD--------FHLPLNSTDEQIRAFHDKCAAHKVTGYAVG 81 (257)
T ss_dssp HHHHHHHHHTTCCEEEECT--------TTSCTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEec--------ccCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 5677788899999999876 222 2222 345566778899998875
No 68
>2x7b_A N-acetyltransferase SSO0209; HET: COA; 1.95A {Sulfolobus solfataricus}
Probab=23.52 E-value=1.7e+02 Score=19.65 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHHHHHc-CCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q 031952 68 SSPYAAMLAAQDVSQRCKEL-GITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~-gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D 130 (150)
+.-++.. +.+.+.+.+.+. |+..|.+.+. ..-..+++...+.|++......
T Consensus 101 g~GiG~~-Ll~~~~~~a~~~~g~~~i~l~v~-----------~~N~~A~~~Yek~GF~~~~~~~ 152 (168)
T 2x7b_A 101 RKGIATT-LLEASMKSMKNDYNAEEIYLEVR-----------VSNYPAIALYEKLNFKKVKVLK 152 (168)
T ss_dssp TSSHHHH-HHHHHHHHHHHTTCCSEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEET
T ss_pred ccCHHHH-HHHHHHHHHHHhcCeeEEEEEEE-----------eCCHHHHHHHHHCCCEEEEEee
Confidence 4456544 446677788887 9999999882 3346788888999998776553
No 69
>2b5g_A Diamine acetyltransferase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: ALY; 1.70A {Homo sapiens} SCOP: d.108.1.1 PDB: 2b4d_A* 2jev_A* 2g3t_A 2f5i_A 2b3u_A 2b3v_A* 2b4b_A* 2b58_A* 2fxf_A* 3bj7_A* 3bj8_A*
Probab=23.17 E-value=1.6e+02 Score=19.21 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIG 126 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~ 126 (150)
+.-++.. +...+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+...
T Consensus 102 g~Gig~~-ll~~~~~~~~~~g~~~i~l~~~-----------~~N~~a~~~y~k~Gf~~~ 148 (171)
T 2b5g_A 102 GFGIGSE-ILKNLSQVAMRCRCSSMHFLVA-----------EWNEPSINFYKRRGASDL 148 (171)
T ss_dssp SSSHHHH-HHHHHHHHHHHHTCSEEEEEEE-----------TTCHHHHHHHHTTTCEEH
T ss_pred CCCHHHH-HHHHHHHHHHHCCCCEEEEEEc-----------ccCHHHHHHHHHcCCEec
Confidence 3345444 4456777788889999998882 334577788888888653
No 70
>1tiq_A Protease synthase and sporulation negative regulatory protein PAI 1; alpha-beta protein, structural genomics, PSI; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.108.1.1
Probab=23.00 E-value=1.9e+02 Score=19.80 Aligned_cols=51 Identities=6% Similarity=-0.001 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEe
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIED 130 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D 130 (150)
+.-++.+ +-+.+.+.+.+.|+..|.+.+ ......+++...+.|++......
T Consensus 104 g~GiG~~-Ll~~~~~~a~~~g~~~i~L~v-----------~~~N~~A~~fY~k~GF~~~g~~~ 154 (180)
T 1tiq_A 104 KHGLGKH-LLNKAIEIALERNKKNIWLGV-----------WEKNENAIAFYKKMGFVQTGAHS 154 (180)
T ss_dssp SSSHHHH-HHHHHHHHHHHTTCSEEEEEE-----------ETTCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHHCCCCEEEEEe-----------hhcCHHHHHHHHHcCCEEcCcEE
Confidence 3345444 345677788889999999888 23356788888889998766543
No 71
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=22.91 E-value=90 Score=22.43 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=18.4
Q ss_pred eeEEEEEccCCCeEEEEeCCCCCeE
Q 031952 27 FGVAHIFASFNDTFIHVTDLSGRET 51 (150)
Q Consensus 27 ~~ilhI~~t~NNT~itlTD~~G~~~ 51 (150)
.||+|+..+..|+ +.+.|.+|..+
T Consensus 84 dgiiyltiskdni-cqfsdekgeqi 107 (146)
T 4a4y_A 84 DGIIYLTISKDNI-CQFSDEKGEQI 107 (146)
T ss_dssp CEEEEEEECTTCC-EEEECTTSCEE
T ss_pred CcEEEEEEecCcc-eecccccCcEe
Confidence 4788888888664 88888888754
No 72
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=22.80 E-value=96 Score=23.23 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeCCCcccCCC----CChHHHHHHHHhCCCeEEEEE
Q 031952 78 QDVSQRCKELGITALHIKLRATGGNKTKTPG----PGAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 78 ~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G----~gr~~~lk~L~~~gl~I~~I~ 129 (150)
+.+++.+.++|+..|++.. ..+. ...+.+.+.|...|+.|.++.
T Consensus 20 ~~~l~~~~~~G~~~vEl~~--------~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 67 (290)
T 2qul_A 20 PATAKRIAGLGFDLMEISL--------GEFHNLSDAKKRELKAVADDLGLTVMCCI 67 (290)
T ss_dssp HHHHHHHHHTTCSEEEEES--------TTGGGSCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEec--------CCccccchhhHHHHHHHHHHcCCceEEec
Confidence 4566777889999999987 2211 123445566777899999875
No 73
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=22.80 E-value=74 Score=24.16 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=35.8
Q ss_pred CCCeEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 031952 36 FNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGI 89 (150)
Q Consensus 36 ~NNT~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi 89 (150)
+.=.++-+.|+.- +++-++||-+-..+++ + ...+..|++++++.++++|+
T Consensus 39 fpgli~R~~~Pk~-~~lIF~SGKiv~TGak--s-~e~~~~a~~~i~~~L~~lg~ 88 (180)
T 1ytb_A 39 FAAVIMRIREPKT-TALIFASGKMVVTGAK--S-EDDSKLASRKYARIIQKIGF 88 (180)
T ss_dssp CSSEEEEETTTTE-EEEECTTSEEEEEEES--S-HHHHHHHHHHHHHHHHHHTC
T ss_pred cCCEEEEeCCCcE-EEEEECCCeEEEEecC--C-HHHHHHHHHHHHHHHHHcCC
Confidence 3344555666665 4556888877777665 3 55678888999999999987
No 74
>1yr0_A AGR_C_1654P, phosphinothricin acetyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.00A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Probab=22.47 E-value=1.8e+02 Score=19.50 Aligned_cols=50 Identities=8% Similarity=0.082 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q 031952 67 ESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128 (150)
Q Consensus 67 K~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I 128 (150)
++.-++.. +.+.+.+.+.+.|+..|.+.+. .....+++.+.+.|+.....
T Consensus 96 rg~Gig~~-ll~~~~~~a~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~g~ 145 (175)
T 1yr0_A 96 RGHGIGKR-LMQALIDHAGGNDVHVLIAAIE-----------AENTASIRLHESLGFRVVGR 145 (175)
T ss_dssp TTSSHHHH-HHHHHHHHHHTTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEE
T ss_pred cCCCHHHH-HHHHHHHHHHhCCccEEEEEec-----------CCCHHHHHHHHHCCCEEEEE
Confidence 34456544 4466777888899999988882 33567888889999976543
No 75
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein struc initiative, midwest center for structural genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Probab=22.15 E-value=1.8e+02 Score=19.20 Aligned_cols=45 Identities=7% Similarity=0.049 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCe
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMK 124 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~ 124 (150)
+.-++.. +.+.+.+.+.++|+..|.+.+ ......+++...+.|++
T Consensus 95 g~GiG~~-Ll~~~~~~a~~~g~~~i~l~v-----------~~~N~~A~~fY~k~GF~ 139 (150)
T 2dxq_A 95 GRGYGRT-VVRHAIETAFGANCYKVMLLT-----------GRHDPAVHAFYESCGFV 139 (150)
T ss_dssp TSSHHHH-HHHHHHHHHHHTTCSEEEEEE-----------CCCCHHHHHHHHHTTCE
T ss_pred CCCHHHH-HHHHHHHHHHHCCCCEEEEEe-----------CCCChHHHHHHHHcCCc
Confidence 3345444 446677888889999999888 34456788888888987
No 76
>2dg5_B Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT, gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli K12} SCOP: d.153.1.6 PDB: 2dbu_B 2dbw_B* 2dbx_B* 2e0x_B 2e0y_B 2z8i_B* 2z8j_B* 2z8k_B*
Probab=22.05 E-value=85 Score=23.79 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=14.9
Q ss_pred eEEEEeCCCCCeEEEEEe
Q 031952 39 TFIHVTDLSGRETLVRIT 56 (150)
Q Consensus 39 T~itlTD~~G~~~~~~Ss 56 (150)
|++++.|.+||.+...++
T Consensus 2 th~svvD~~GnaVS~T~S 19 (190)
T 2dg5_B 2 THYSVVDKDGNAVAVTYT 19 (190)
T ss_dssp EEEEEECTTSCEEEEEEE
T ss_pred eEEEEECCCCCEEEEEec
Confidence 789999999998766555
No 77
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=22.02 E-value=2.6e+02 Score=22.12 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccC-------CCCChHHH---HHHHHhCCCeEEEEEeccCCCC
Q 031952 73 AMLAAQDVSQRCKELGITALHIKLRATGGNKTKT-------PGPGAQSA---LRALARSGMKIGRIEDVTPIPT 136 (150)
Q Consensus 73 a~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG-------~G~gr~~~---lk~L~~~gl~I~~I~D~Tpiph 136 (150)
+..+...+.+-|.++|++.|.|+-=-+ .||.+. ++.-++.+ +..|...|+.|.-|-|...+|.
T Consensus 49 G~~~l~~iv~~c~~~GI~~lTlYaFSt-eNwkRp~~EV~~Lm~l~~~~l~~~~~~l~~~~vr~~~iG~~~~lp~ 121 (249)
T 1f75_A 49 GMQTVRKITRYASDLGVKYLTLYAFST-ENWSRPKDEVNYLMKLPGDFLNTFLPELIEKNVKVETIGFIDDLPD 121 (249)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEC-------------CGGGTHHHHHHHHHHHHHHHTTCEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEecc-cccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEeCChhhCCH
Confidence 345557788889999999999988110 011000 01111111 2235557899999999888874
No 78
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=21.90 E-value=1.1e+02 Score=22.88 Aligned_cols=46 Identities=9% Similarity=0.048 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEE
Q 031952 78 QDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 78 ~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~ 129 (150)
+.+++.+.++|+..|++... ...... ..+.+-+.|...||.|..+.
T Consensus 26 ~~~l~~a~~~G~~~vEl~~~-----~~~~~~-~~~~~~~~l~~~gl~i~~~~ 71 (264)
T 1yx1_A 26 ASFLPLLAMAGAQRVELREE-----LFAGPP-DTEALTAAIQLQGLECVFSS 71 (264)
T ss_dssp GGGHHHHHHHTCSEEEEEGG-----GCSSCC-CHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEHH-----hcCCCH-HHHHHHHHHHHcCCEEEEec
Confidence 55777888999999998751 001111 45666677888999987653
No 79
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=21.74 E-value=1.5e+02 Score=22.32 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCcEEEEEEEeeCCCcccCCCC-ChHHHHHHHHhCCCeEEEEE
Q 031952 79 DVSQRCKELGITALHIKLRATGGNKTKTPGP-GAQSALRALARSGMKIGRIE 129 (150)
Q Consensus 79 ~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~-gr~~~lk~L~~~gl~I~~I~ 129 (150)
..++.+.++|+..|++.+... ..+.. ..+.+.+.|...||+|.++.
T Consensus 25 ~~l~~~~~~G~~~vEl~~~~~-----~~~~~~~~~~~~~~l~~~gl~~~~~~ 71 (290)
T 3tva_A 25 VHLEVAQDLKVPTVQVHAPHP-----HTRTREHAQAFRAKCDAAGIQVTVIF 71 (290)
T ss_dssp BCHHHHHHTTCSEEEEECCCG-----GGCSHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCEEEecCCCC-----CcCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 356677789999999988211 11111 13445566778899999884
No 80
>2eui_A Probable acetyltransferase; dimer, structural genomics, PSI, protein structure initiative; 2.80A {Pseudomonas aeruginosa PAO1} SCOP: d.108.1.1
Probab=21.67 E-value=1.6e+02 Score=18.56 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeE
Q 031952 67 ESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKI 125 (150)
Q Consensus 67 K~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I 125 (150)
++.-++.. +.+.+.+.+.+.|+..+.+.+. ..-..+++.+.+.|+..
T Consensus 91 rg~Gig~~-ll~~~~~~~~~~g~~~i~~~~~-----------~~N~~a~~~y~k~Gf~~ 137 (153)
T 2eui_A 91 RRQLVADH-LLQHAKQMARETHAVRMRVSTS-----------VDNEVAQKVYESIGFRE 137 (153)
T ss_dssp CHHHHHHH-HHHHHHHHHHHTTEEEEEEEEE-----------TTCHHHHHHHHTTTCBC
T ss_pred hcCChHHH-HHHHHHHHHHHcCCCEEEEEEe-----------cCCHHHHHHHHHcCCEE
Confidence 44466554 4456778888899999988872 23467788888888764
No 81
>2fia_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 2.60A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=21.63 E-value=1.7e+02 Score=18.75 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEec
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDV 131 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~ 131 (150)
+.-++.. +...+.+.+.+.|+..+.+.+. ..-..+++.+.+.|+........
T Consensus 89 g~Gig~~-ll~~~~~~~~~~g~~~i~~~~~-----------~~N~~a~~~y~k~Gf~~~~~~~~ 140 (162)
T 2fia_A 89 AKGYGSL-LFHELEKRAVWEGRRKMYAQTN-----------HTNHRMIRFFESKGFTKIHESLQ 140 (162)
T ss_dssp TTTHHHH-HHHHHHHHHHTTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEEEECC
T ss_pred CCCHHHH-HHHHHHHHHHHCCCCEEEEEec-----------CCCHHHHHHHHHCCCEEEeeEee
Confidence 3345444 4456777888899999988882 33467888889999987665543
No 82
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=21.48 E-value=1.7e+02 Score=18.94 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEec
Q 031952 69 SPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDV 131 (150)
Q Consensus 69 t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~ 131 (150)
+...|...-+..+..|...|+..|.|+= | ||.|.=|..+-..|.+. -.|.+..+-
T Consensus 13 ~~~eA~~~l~~fl~~a~~~g~~~v~IIH-G------kG~GvLr~~V~~~L~~~-~~V~~f~~a 67 (83)
T 2zqe_A 13 TVAEALLEVDQALEEARALGLSTLRLLH-G------KGTGALRQAIREALRRD-KRVESFADA 67 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEEEEC-C------STTSHHHHHHHHHHHHC-TTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEE-C------CCchHHHHHHHHHHhcC-CceeEEEEc
Confidence 4666777778889999999999988765 2 44444367777777765 356666654
No 83
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=21.43 E-value=94 Score=23.73 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=34.6
Q ss_pred CeEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 031952 38 DTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGIT 90 (150)
Q Consensus 38 NT~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi~ 90 (150)
=.++-+.++.- ..+-++||-+--.+++ + ...+..|+.++++.++++|++
T Consensus 49 gli~Rl~~Pk~-t~lIF~SGKiv~TGAk--S-~e~a~~a~~~~~~~L~~lg~~ 97 (188)
T 2z8u_A 49 GLVCRLSVPKV-ALLIFRSGKVNCTGAK--S-KEEAEIAIKKIIKELKDAGID 97 (188)
T ss_dssp CEEEEETTTTE-EEEECTTSEEEEEEES--S-HHHHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEcCCCcE-EEEEeCCCeEEEecCC--C-HHHHHHHHHHHHHHHHhcCCC
Confidence 44455556654 3445777777777654 3 567888999999999999975
No 84
>3lod_A Putative acyl-COA N-acyltransferase; structural genomics, PSI2, MCSG, structure initiative; 2.50A {Klebsiella pneumoniae subsp}
Probab=21.40 E-value=1.7e+02 Score=18.87 Aligned_cols=49 Identities=8% Similarity=0.149 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEE
Q 031952 67 ESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGR 127 (150)
Q Consensus 67 K~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~ 127 (150)
++.-++.. +.+.+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+....
T Consensus 87 rg~Gig~~-ll~~~~~~~~~~g~~~i~l~~~-----------~~n~~a~~~y~~~GF~~~~ 135 (162)
T 3lod_A 87 RGQQLGEK-LLAALEAKARQRDCHTLRLETG-----------IHQHAAIALYTRNGYQTRC 135 (162)
T ss_dssp CSSSHHHH-HHHHHHHHHHTTTCCEEEEEEE-----------TTCHHHHHHHHHTTCEEEC
T ss_pred cCCCHHHH-HHHHHHHHHHHCCCcEEEEEec-----------CCCHHHHHHHHHcCCEEcc
Confidence 34456544 4466788888899999988882 3346678888888987653
No 85
>1ufh_A YYCN protein; alpha and beta, fold, acetyltransferase, structural genomics, PSI, protein structure initiative; 2.20A {Bacillus subtilis subsp} SCOP: d.108.1.1
Probab=21.39 E-value=1.7e+02 Score=19.55 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIG 126 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~ 126 (150)
+.-++.. +...+.+.+.+.|+..|.+.+ ...-..+++.+.+.|++..
T Consensus 126 g~Gig~~-ll~~~~~~~~~~g~~~i~l~~-----------~~~N~~a~~~y~k~GF~~~ 172 (180)
T 1ufh_A 126 GKGYAKQ-ALAALDQAARSMGIRKLSLHV-----------FAHNQTARKLYEQTGFQET 172 (180)
T ss_dssp SSSHHHH-HHHHHHHHHHHTTCCEEEECC-----------CTTCHHHHHHHHHTTCCCC
T ss_pred CCChHHH-HHHHHHHHHHHCCCCEEEEEe-----------ccCcHHHHHHHHHCCCEEe
Confidence 3346444 445577778889999987777 3445677888888888653
No 86
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=21.10 E-value=1.3e+02 Score=23.06 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=35.1
Q ss_pred CeEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 031952 38 DTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGIT 90 (150)
Q Consensus 38 NT~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi~ 90 (150)
=.++-+.++.- ..+-++||-+--.+++ + ...+..|+.++++.++++|++
T Consensus 49 gli~Rl~~Pk~-t~lIF~SGKiv~TGak--S-~e~a~~a~~~i~~~L~~lG~~ 97 (198)
T 1mp9_A 49 GLIFRLESPKI-TSLIFKSGKMVVTGAK--S-TDELIKAVKRIIKTLKKYGMQ 97 (198)
T ss_dssp SEEEEETTTTE-EEEECTTSEEEEECCS--S-HHHHHHHHHHHHHHHHHTTCC
T ss_pred ceEEEcCCCce-EEEEeCCCeEEEeccC--C-HHHHHHHHHHHHHHHHHcCCc
Confidence 34455556655 3455778877777665 3 566888999999999999985
No 87
>2cnt_A Modification of 30S ribosomal subunit protein S18; N-alpha acetylation, GCN5-N-acetyltransferase, ribosomal Pro acetyltransferase, GNAT; HET: COA; 2.4A {Salmonella typhimurium} PDB: 2cnm_A* 2cns_A*
Probab=21.07 E-value=1.9e+02 Score=19.15 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEE
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRI 128 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I 128 (150)
+.-++.. +...+.+.+.+.|+..|.+.+. ..-..+++.+.+.|+.....
T Consensus 77 g~Gig~~-ll~~~~~~~~~~g~~~i~l~v~-----------~~N~~a~~~y~k~GF~~~~~ 125 (160)
T 2cnt_A 77 RRGLGRM-LLEHLIDELETRGVVTLWLEVR-----------ASNAAAIALYESLGFNEATI 125 (160)
T ss_dssp SSSHHHH-HHHHHHHHHHHTTCCEEEEEEE-----------TTCHHHHHHHHHHTCEEEEE
T ss_pred CCCHHHH-HHHHHHHHHHHcCCcEEEEEEe-----------cCCHHHHHHHHHCCCEEEEE
Confidence 3346544 4456777888899999988882 23457778888889876543
No 88
>2qmc_B GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET: GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_B* 2nqo_B* 3fnm_B*
Probab=21.06 E-value=82 Score=23.88 Aligned_cols=18 Identities=33% Similarity=0.270 Sum_probs=15.0
Q ss_pred eEEEEeCCCCCeEEEEEe
Q 031952 39 TFIHVTDLSGRETLVRIT 56 (150)
Q Consensus 39 T~itlTD~~G~~~~~~Ss 56 (150)
|++++.|.+||.+...++
T Consensus 2 th~svvD~~GnaVS~T~S 19 (188)
T 2qmc_B 2 THYSVADRWGNAVSVTYT 19 (188)
T ss_dssp EEEEEEETTSCEEEEEEE
T ss_pred eEEEEECCCCCEEEEEec
Confidence 789999999998766655
No 89
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=20.84 E-value=95 Score=24.46 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=34.6
Q ss_pred CeEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Q 031952 38 DTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGI 89 (150)
Q Consensus 38 NT~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi 89 (150)
=.++-+.|++- +++.++||-+-..+++ + ...+..|++++++.++++|+
T Consensus 79 glv~Rl~~Pk~-t~LIF~SGKiV~TGAk--S-~e~a~~A~~ki~~~L~~lG~ 126 (218)
T 3eik_A 79 AVIMRIREPKT-TALIFASGKMVITGAK--S-EKSSRMAAQRYAKIIHKLGF 126 (218)
T ss_dssp SEEEEETTTTE-EEEECTTSEEEEEEES--S-HHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEecCCcE-EEEEECCCeEEEEecC--C-HHHHHHHHHHHHHHHHHcCC
Confidence 34555666665 3445788877777665 3 66688888999999999996
No 90
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=20.73 E-value=93 Score=23.63 Aligned_cols=44 Identities=14% Similarity=0.242 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeCCCcccCC-------CCC---hHHHHHHHHhCCCeEEEEE
Q 031952 78 QDVSQRCKELGITALHIKLRATGGNKTKTP-------GPG---AQSALRALARSGMKIGRIE 129 (150)
Q Consensus 78 ~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~-------G~g---r~~~lk~L~~~gl~I~~I~ 129 (150)
+..++.+.++|+..|++.+ ... ... .+.+-+.|...|+.|.++.
T Consensus 33 ~~~l~~~~~~G~~~iEl~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 86 (295)
T 3cqj_A 33 LERLQLAKTLGFDFVEMSV--------DETDERLSRLDWSREQRLALVNAIVETGVRVPSMC 86 (295)
T ss_dssp HHHHHHHHHTTCSEEEEEC--------CSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEec--------CCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 4566778889999999987 221 111 2335555677899999885
No 91
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=20.44 E-value=1.1e+02 Score=21.30 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEEEEee
Q 031952 73 AMLAAQDVSQRCKELGITALHIKLRAT 99 (150)
Q Consensus 73 a~~aa~~i~~~~~~~gi~~v~V~~~~~ 99 (150)
.++|++.+-+.++++|+. |.|..+|.
T Consensus 18 TymAaeaL~~aA~~~G~~-ikVEtqGs 43 (106)
T 2r4q_A 18 TFMAADALKEKAKELGVE-IKVETNGS 43 (106)
T ss_dssp HHHHHHHHHHHHHHHTCC-EEEEEEET
T ss_pred HHHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 567788888889999998 77888664
No 92
>1yk3_A Hypothetical protein RV1347C/MT1389; acyltransferase, GCN5-related fold, structural genomics, PSI, protein structure initiative; HET: BOG; 2.20A {Mycobacterium tuberculosis} SCOP: d.108.1.1
Probab=20.24 E-value=2.2e+02 Score=20.48 Aligned_cols=51 Identities=8% Similarity=0.025 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHHHHHH--cCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEEEEEec
Q 031952 69 SPYAAMLAAQDVSQRCKE--LGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDV 131 (150)
Q Consensus 69 t~~Aa~~aa~~i~~~~~~--~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~~I~D~ 131 (150)
.-|+.. +...+.+.+.+ +|+..|.+.+ ...-..+++.+.+.|+......+.
T Consensus 141 kGiG~~-ll~~~~~~a~~~~~g~~~I~l~v-----------~~~N~~A~~lyek~GF~~~g~~~~ 193 (210)
T 1yk3_A 141 RGFGPL-LLPRIVASVFANEPRCRRIMFDP-----------DHRNTATRRLCEWAGCKFLGEHDT 193 (210)
T ss_dssp TTHHHH-HHHHHHHHHHHHCTTCCEEEECC-----------BTTCHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHH-HHHHHHHHHHhcCCCCCEEEEec-----------CccCHHHHHHHHHcCCEEeEEEeC
Confidence 345444 44567777775 8999998887 344578889999999987666543
No 93
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=20.22 E-value=1.3e+02 Score=22.81 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=33.6
Q ss_pred eEEEEeCCCCCeEEEEEeecCccccCCCCCCHHHHHHHHHHHHHHHHHcCCc
Q 031952 39 TFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGIT 90 (150)
Q Consensus 39 T~itlTD~~G~~~~~~SsG~~g~kk~~rK~t~~Aa~~aa~~i~~~~~~~gi~ 90 (150)
.++-+.++.- ...-++||-+--.+++ + ...+..|+.++++.++++|++
T Consensus 46 li~Rl~~P~~-t~lIF~SGKiv~TGak--S-~~~~~~a~~~i~~~L~~lG~~ 93 (182)
T 1ais_A 46 IICHLDDPKV-ALLIFSSGKLVVTGAK--S-VQDIERAVAKLAQKLKSIGVK 93 (182)
T ss_dssp EEEECSSSCC-EEEECTTSEEEEEEES--S-HHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCCcE-EEEEeCCCeEEEecCC--C-HHHHHHHHHHHHHHHHHcCCC
Confidence 3444445554 3455778877777664 3 567888999999999999975
No 94
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=20.19 E-value=1.2e+02 Score=21.10 Aligned_cols=27 Identities=15% Similarity=0.469 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEEee
Q 031952 72 AAMLAAQDVSQRCKELGITALHIKLRAT 99 (150)
Q Consensus 72 Aa~~aa~~i~~~~~~~gi~~v~V~~~~~ 99 (150)
..++|++.+-+.++++|+. |.|..+|.
T Consensus 17 hTymAaeaL~~aA~~~G~~-ikVEtqGs 43 (106)
T 2r48_A 17 HTYMAAENLQKAADRLGVS-IKVETQGG 43 (106)
T ss_dssp HHHHHHHHHHHHHHHHTCE-EEEEEEET
T ss_pred HHHHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 3577888898899999987 77888664
No 95
>2v36_B Gamma-glutamyltranspeptidase small chain; transferase, glutathione biosynthesis, gamma-glutamyl transferase, acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB: 3a75_B*
Probab=20.09 E-value=88 Score=23.91 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=15.0
Q ss_pred eEEEEeCCCCCeEEEEEe
Q 031952 39 TFIHVTDLSGRETLVRIT 56 (150)
Q Consensus 39 T~itlTD~~G~~~~~~Ss 56 (150)
|++++.|.+||.+...+|
T Consensus 2 th~sVvD~~GnaVS~T~S 19 (193)
T 2v36_B 2 THFTVADRWGNVVSYTTT 19 (193)
T ss_dssp EEEEEEETTSCEEEEEEE
T ss_pred eEEEEECCCCCEEEEEec
Confidence 789999999998766665
No 96
>4h89_A GCN5-related N-acetyltransferase; N-acyltransferase superfamily, structural genomics, PSI-BIOL midwest center for structural genomics, MCSG; 1.37A {Kribbella flavida}
Probab=20.02 E-value=2.1e+02 Score=19.38 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEEEeeCCCcccCCCCChHHHHHHHHhCCCeEE-EEEe
Q 031952 68 SSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIG-RIED 130 (150)
Q Consensus 68 ~t~~Aa~~aa~~i~~~~~~~gi~~v~V~~~~~~g~~~kG~G~gr~~~lk~L~~~gl~I~-~I~D 130 (150)
+.-++.. +.+.+.+.|.+.|+..+.+... + ..-..+++...+.|++.. .+.+
T Consensus 102 g~GiG~~-Ll~~~~~~a~~~g~~~~~l~~~---------~-~~N~~A~~~y~k~GF~~~G~~~~ 154 (173)
T 4h89_A 102 GRGVGRA-LCQDMIDWAGREGFRAIQFNAV---------V-ETNTVAVKLWQSLGFRVIGTVPE 154 (173)
T ss_dssp TSSHHHH-HHHHHHHHHHHTTCSEEEEEEE---------E-TTCHHHHHHHHHTTCEEEEEEEE
T ss_pred cchHHHH-HHHHHHHHHHHCCCcEEEEeee---------c-ccCHHHHHHHHHCCCEEEEEEcc
Confidence 3345444 4466778889999998876431 1 234678888899999865 3444
Done!