Query 031953
Match_columns 150
No_of_seqs 131 out of 1074
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:38:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 9.8E-55 2.1E-59 305.1 13.1 143 4-148 2-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.5E-53 3.2E-58 305.0 15.8 146 1-148 1-152 (153)
3 PTZ00390 ubiquitin-conjugating 100.0 1.1E-49 2.4E-54 287.3 17.0 145 1-148 1-148 (152)
4 KOG0419 Ubiquitin-protein liga 100.0 8.5E-50 1.8E-54 273.5 13.6 143 1-145 1-147 (152)
5 PLN00172 ubiquitin conjugating 100.0 5.7E-49 1.2E-53 282.3 16.7 141 5-147 3-146 (147)
6 KOG0424 Ubiquitin-protein liga 100.0 3.8E-45 8.2E-50 253.9 14.0 146 1-148 1-157 (158)
7 KOG0425 Ubiquitin-protein liga 100.0 6.2E-45 1.3E-49 256.2 14.5 138 6-145 11-162 (171)
8 KOG0418 Ubiquitin-protein liga 100.0 6.1E-45 1.3E-49 263.2 12.8 147 1-148 1-153 (200)
9 KOG0416 Ubiquitin-protein liga 100.0 1.6E-44 3.6E-49 257.1 10.3 148 1-148 1-148 (189)
10 PF00179 UQ_con: Ubiquitin-con 100.0 2.1E-43 4.6E-48 251.6 14.0 135 7-143 1-140 (140)
11 KOG0426 Ubiquitin-protein liga 100.0 2.5E-43 5.5E-48 241.8 12.7 143 1-145 1-161 (165)
12 KOG0421 Ubiquitin-protein liga 100.0 1.6E-43 3.5E-48 245.9 11.2 139 4-145 30-171 (175)
13 cd00195 UBCc Ubiquitin-conjuga 100.0 1.3E-42 2.9E-47 247.7 15.8 136 6-143 2-141 (141)
14 smart00212 UBCc Ubiquitin-conj 100.0 1.8E-41 3.9E-46 243.0 16.0 140 6-147 1-145 (145)
15 KOG0420 Ubiquitin-protein liga 100.0 7.7E-39 1.7E-43 228.5 11.7 141 4-147 29-174 (184)
16 KOG0422 Ubiquitin-protein liga 100.0 4.2E-38 9.1E-43 217.7 12.3 141 4-147 3-148 (153)
17 KOG0423 Ubiquitin-protein liga 100.0 7.5E-36 1.6E-40 213.5 7.6 142 4-147 11-155 (223)
18 KOG0427 Ubiquitin conjugating 100.0 1.8E-29 4E-34 173.2 10.9 116 4-122 16-136 (161)
19 KOG0894 Ubiquitin-protein liga 100.0 1.5E-27 3.3E-32 176.1 13.0 131 1-136 1-143 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 8.3E-24 1.8E-28 156.9 12.5 136 7-144 23-166 (258)
21 KOG0428 Non-canonical ubiquiti 99.8 1.1E-20 2.4E-25 142.4 9.8 109 4-115 12-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.7 1.1E-16 2.4E-21 140.2 6.9 97 16-114 867-972 (1101)
23 KOG0895 Ubiquitin-conjugating 99.5 2.6E-14 5.6E-19 125.6 10.3 108 5-114 284-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.5 3.8E-14 8.2E-19 98.1 8.1 107 4-111 6-121 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.5 3.6E-07 7.7E-12 64.5 7.3 66 45-112 34-105 (133)
26 KOG0897 Predicted ubiquitin-co 98.5 3.7E-07 8E-12 61.9 6.7 92 49-143 13-110 (122)
27 PF05743 UEV: UEV domain; Int 98.1 2.4E-05 5.2E-10 54.4 7.5 76 34-112 33-116 (121)
28 KOG2391 Vacuolar sorting prote 97.2 0.0047 1E-07 49.6 9.4 77 36-115 55-139 (365)
29 PF14462 Prok-E2_E: Prokaryoti 96.7 0.03 6.5E-07 38.9 9.2 92 15-111 9-119 (122)
30 PF08694 UFC1: Ubiquitin-fold 96.4 0.0011 2.3E-08 47.0 0.7 55 48-103 76-135 (161)
31 PF05773 RWD: RWD domain; Int 95.2 0.065 1.4E-06 35.6 5.3 45 27-71 27-73 (113)
32 smart00591 RWD domain in RING 94.3 0.42 9.2E-06 31.4 7.5 26 46-71 40-65 (107)
33 KOG3357 Uncharacterized conser 93.3 0.13 2.7E-06 36.1 3.6 90 5-103 29-138 (167)
34 PF14457 Prok-E2_A: Prokaryoti 91.4 0.32 6.9E-06 35.5 3.9 61 50-112 56-125 (162)
35 KOG0309 Conserved WD40 repeat- 82.7 7 0.00015 35.3 7.5 65 6-71 423-491 (1081)
36 KOG4018 Uncharacterized conser 82.0 5.4 0.00012 30.4 5.8 21 48-68 50-70 (215)
37 PF09765 WD-3: WD-repeat regio 75.4 6.8 0.00015 31.3 5.0 79 6-105 102-181 (291)
38 PF06113 BRE: Brain and reprod 61.7 13 0.00028 30.3 3.9 28 46-74 305-332 (333)
39 cd00421 intradiol_dioxygenase 53.7 22 0.00048 25.1 3.7 25 46-70 65-90 (146)
40 PF03366 YEATS: YEATS family; 52.3 60 0.0013 20.8 5.2 42 30-73 2-43 (84)
41 cd03457 intradiol_dioxygenase_ 49.4 27 0.00059 26.0 3.7 25 46-70 86-110 (188)
42 PHA02131 hypothetical protein 47.9 6 0.00013 23.7 -0.0 64 71-149 2-69 (70)
43 PF14460 Prok-E2_D: Prokaryoti 47.6 29 0.00062 25.4 3.5 20 69-89 89-111 (175)
44 cd03459 3,4-PCD Protocatechuat 43.5 39 0.00085 24.4 3.7 25 46-70 72-101 (158)
45 TIGR03737 PRTRC_B PRTRC system 39.5 49 0.0011 25.5 3.8 20 70-90 131-153 (228)
46 KOG1047 Bifunctional leukotrie 34.4 43 0.00094 29.3 3.0 29 42-71 248-279 (613)
47 PF00845 Gemini_BL1: Geminivir 34.3 90 0.0019 24.5 4.5 46 28-73 101-154 (276)
48 KOG2851 Eukaryotic-type DNA pr 34.0 86 0.0019 26.0 4.5 33 77-110 332-369 (412)
49 smart00340 HALZ homeobox assoc 33.7 30 0.00065 19.4 1.4 12 4-15 20-31 (44)
50 KOG3203 Mitochondrial/chloropl 31.9 24 0.00052 25.6 1.0 14 71-86 50-63 (165)
51 PF13950 Epimerase_Csub: UDP-g 31.4 51 0.0011 19.8 2.3 15 91-105 36-50 (62)
52 KOG0177 20S proteasome, regula 30.7 21 0.00045 26.8 0.5 30 81-111 135-164 (200)
53 PF09606 Med15: ARC105 or Med1 30.6 17 0.00036 33.2 0.0 25 47-71 714-738 (799)
54 PF04881 Adeno_GP19K: Adenovir 30.3 54 0.0012 23.1 2.5 29 26-54 44-73 (139)
55 TIGR02423 protocat_alph protoc 30.2 79 0.0017 23.7 3.6 24 46-69 96-124 (193)
56 KOG0662 Cyclin-dependent kinas 28.2 58 0.0013 24.8 2.5 56 61-117 167-225 (292)
57 cd03463 3,4-PCD_alpha Protocat 27.8 93 0.002 23.1 3.6 24 46-69 92-120 (185)
58 COG3866 PelB Pectate lyase [Ca 27.7 1.1E+02 0.0024 24.9 4.1 39 31-70 198-240 (345)
59 KOG4445 Uncharacterized conser 27.3 82 0.0018 25.5 3.3 25 47-71 45-69 (368)
60 PF12018 DUF3508: Domain of un 27.0 76 0.0016 25.0 3.1 29 118-146 237-265 (281)
61 smart00545 JmjN Small domain f 26.4 56 0.0012 18.2 1.7 20 130-149 13-32 (42)
62 PF06113 BRE: Brain and reprod 25.3 1.2E+02 0.0026 24.8 4.0 41 30-76 54-95 (333)
63 PF02375 JmjN: jmjN domain; I 25.1 55 0.0012 17.4 1.4 20 130-149 11-30 (34)
64 PF01175 Urocanase: Urocanase; 24.6 72 0.0016 27.7 2.7 26 121-146 271-296 (546)
65 PF11333 DUF3135: Protein of u 24.4 94 0.002 20.0 2.7 23 123-145 8-30 (83)
66 PRK05414 urocanate hydratase; 22.4 82 0.0018 27.4 2.6 26 121-146 281-306 (556)
67 PRK11700 hypothetical protein; 22.2 2.7E+02 0.0059 20.8 5.1 61 39-105 101-184 (187)
68 TIGR01228 hutU urocanate hydra 22.1 84 0.0018 27.2 2.6 26 121-146 272-297 (545)
69 PF09943 DUF2175: Uncharacteri 21.5 94 0.002 20.9 2.3 19 31-51 2-20 (101)
70 PF09280 XPC-binding: XPC-bind 21.5 1.5E+02 0.0033 17.6 3.0 22 120-141 34-55 (59)
71 TIGR02439 catechol_proteo cate 20.0 1.5E+02 0.0033 23.7 3.6 24 46-69 180-221 (285)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-55 Score=305.12 Aligned_cols=143 Identities=32% Similarity=0.646 Sum_probs=138.0
Q ss_pred hHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 4 PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 4 ~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
+.+||.+|+++ .+++|+++.+.++|++.|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+ .
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~-~ 80 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNID-S 80 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcC-c
Confidence 34799999874 4789999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+|.||+|+|++.|+|+++|.+||++ |++||.+|++++|++.++|.+|++|+++|++.||+|+++||+
T Consensus 81 ~G~IclDILk~~WsPAl~i~~Vlls-I~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 81 NGRICLDILKDQWSPALTISKVLLS-ICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred cccchHHhhhccCChhhHHHHHHHH-HHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999 999999999999999999999999999999999999999986
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-53 Score=304.99 Aligned_cols=146 Identities=38% Similarity=0.746 Sum_probs=139.4
Q ss_pred CCC--hHHHHHHHHHhc---CCCCcEEEecCC-CceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccc
Q 031953 1 MSS--PSKRREMDLMKL---MMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (150)
Q Consensus 1 Ms~--~~~Rl~~e~~~~---~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 74 (150)
|++ |.+||++|++++ +++++++.+.++ |+++|+++|.||++|+||||+|++.|.||++||++||+|+|.|+|||
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 454 899999998865 668999999988 99999999999999999999999999999999999999999999999
Q ss_pred cceeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 75 PNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 75 pnV~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
|||| .+|+||+|+|++.|+|++++++||++ |++||.+||.++|+|.+||++|++|+++|.++||+++++++.
T Consensus 81 PNV~-~~G~vCLdIL~~~WsP~~~l~sILls-l~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 81 PNVD-PSGNVCLDILKDRWSPVYTLETILLS-LQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCcC-CCCCChhHHHhCCCCccccHHHHHHH-HHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999 69999999999999999999999999 999999999999999999999999999999999999999863
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-49 Score=287.32 Aligned_cols=145 Identities=32% Similarity=0.628 Sum_probs=138.7
Q ss_pred CCChHHHHHHHHHhc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccce
Q 031953 1 MSSPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (150)
Q Consensus 1 Ms~~~~Rl~~e~~~~---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV 77 (150)
|| +.+||++|++++ +++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 1 ~~-~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 1 MS-ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred Cc-HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 55 569999998865 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 78 DELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 78 ~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
++ +|.||+++|++.|+|++|+++||.+ |+++|.+|++++|+|.+||++|++|+++|+++||+|+++||.
T Consensus 80 ~~-~G~iCl~iL~~~W~p~~ti~~iL~~-i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 80 DK-LGRICLDILKDKWSPALQIRTVLLS-IQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CC-CCeEECccCcccCCCCCcHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 95 9999999999999999999999999 999999999999999999999999999999999999999874
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-50 Score=273.46 Aligned_cols=143 Identities=33% Similarity=0.713 Sum_probs=137.0
Q ss_pred CCC-hHHHHHHHHHhc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccc
Q 031953 1 MSS-PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~~---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 76 (150)
||+ |.+||++|++++ ++.|++..|.++|+.+|.++|+||.+|||+||+|++.|.|+++||.+||.|+|.+..||||
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN 80 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN 80 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence 888 778999998865 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccc
Q 031953 77 VDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPS 145 (150)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~ 145 (150)
|+ .+|.+|+|+|...|+|++++.+||.+ ||+||.+|++++|+|.+||++|++|+.+|.+++|+.+.+
T Consensus 81 vy-a~G~iClDiLqNrWsp~Ydva~ILts-iQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veq 147 (152)
T KOG0419|consen 81 VY-ADGSICLDILQNRWSPTYDVASILTS-IQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQ 147 (152)
T ss_pred cC-CCCcchHHHHhcCCCCchhHHHHHHH-HHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHH
Confidence 99 58999999999999999999999999 999999999999999999999999999999999998653
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=5.7e-49 Score=282.31 Aligned_cols=141 Identities=31% Similarity=0.656 Sum_probs=136.0
Q ss_pred HHHHHHHHHhc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCCC
Q 031953 5 SKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (150)
Q Consensus 5 ~~Rl~~e~~~~---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~~ 81 (150)
.+||++|++++ +++|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||||||++ +
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~-~ 81 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS-N 81 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC-C
Confidence 48999998855 6789999999999999999999999999999999999999999999999999999999999995 9
Q ss_pred CceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccC
Q 031953 82 GSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQS 147 (150)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 147 (150)
|.||+++|.+.|+|++++++||.+ |+++|.+|++++|+|.+||++|.+|+++|.++||+|+++||
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~-i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLS-ISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999999999999999999999999987
No 6
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-45 Score=253.92 Aligned_cols=146 Identities=27% Similarity=0.539 Sum_probs=136.9
Q ss_pred CCC-hHHHHHHHHH---hcCCCCcEEEecC-----CCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecc
Q 031953 1 MSS-PSKRREMDLM---KLMMSDYKVEMIN-----DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~---~~~~~~~~v~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 71 (150)
||+ +..||++|-+ +..+-|+++.|.. .|+..|+|.|.|+.||+||||.|.+++.||++||.+||+++|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 776 7889999854 5688899998875 278999999999999999999999999999999999999999999
Q ss_pred ccccceeCCCCceeccccCCC--CCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 72 IYHPNVDELSGSVCLDVINQT--WSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 72 i~HpnV~~~~G~icl~~l~~~--W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+|||||++ +|.|||++|.+. |+|+.||.+||.+ ||+||.+||..+|+|.+|..+|.+|+.+|+++||.+++++|-
T Consensus 81 l~HPNVyp-sgtVcLsiL~e~~~W~paitikqiL~g-IqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 81 LFHPNVYP-SGTVCLSILNEEKDWRPAITIKQILLG-IQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CcCCCcCC-CCcEehhhhccccCCCchhhHHHHHHH-HHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 99999996 999999999865 9999999999999 999999999999999999999999999999999999999874
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-45 Score=256.20 Aligned_cols=138 Identities=26% Similarity=0.584 Sum_probs=128.8
Q ss_pred HHHHHHHHhcCCCCcEEEecCC-CceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCCCCce
Q 031953 6 KRREMDLMKLMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV 84 (150)
Q Consensus 6 ~Rl~~e~~~~~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~~G~i 84 (150)
+|-.+++++.+.+|+++.+.++ |+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|.+|||||++ +|.+
T Consensus 11 ~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~-~G~v 89 (171)
T KOG0425|consen 11 LKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE-DGDV 89 (171)
T ss_pred HHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC-CCCE
Confidence 4445566667889999998876 9999999999999999999999999999999999999999999999999995 9999
Q ss_pred eccccC-------------CCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccc
Q 031953 85 CLDVIN-------------QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPS 145 (150)
Q Consensus 85 cl~~l~-------------~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~ 145 (150)
|++||- +.|+|.+|+++||++ |.+||.+||.++|+|-+||+.|++|+++|.++++++|++
T Consensus 90 CISILH~pgdD~~gyE~~~erW~Pv~tvetIllS-iIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~ 162 (171)
T KOG0425|consen 90 CISILHPPGDDPSGYELPSERWLPVQTVETILLS-IISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRR 162 (171)
T ss_pred EEEeecCCCCCcccCCChhhccCCccchhHhHHH-HHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHH
Confidence 999993 479999999999999 999999999999999999999999999999999999875
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-45 Score=263.22 Aligned_cols=147 Identities=29% Similarity=0.615 Sum_probs=140.4
Q ss_pred CCChHHHHHHHHHhc---C---CCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccc
Q 031953 1 MSSPSKRREMDLMKL---M---MSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (150)
Q Consensus 1 Ms~~~~Rl~~e~~~~---~---~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 74 (150)
||-|.+||++|+++. + ..|+.++..++|+.+..+.|.||+|||||||+|.++|.+|++|||+||+|+|.|+|||
T Consensus 1 m~~~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 1 MSNAFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred CccHHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 677889999998854 2 5789999999999999999999999999999999999999999999999999999999
Q ss_pred cceeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 75 PNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 75 pnV~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
|||...+|+||+|+|++.|++++|++++|++ ||.+|..|++.+|.+..+|++|.+|++.|.+.||.|+.+||-
T Consensus 81 PnVSs~tGaICLDilkd~Wa~slTlrtvLis-lQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~ 153 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASLTLRTVLIS-LQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAG 153 (200)
T ss_pred CCCCcccccchhhhhhcccchhhhHHHHHHH-HHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999998874
No 9
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-44 Score=257.14 Aligned_cols=148 Identities=71% Similarity=1.238 Sum_probs=145.5
Q ss_pred CCChHHHHHHHHHhcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 1 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 1 Ms~~~~Rl~~e~~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
||++.||+..|+.++..+++.|...++++++++|.+.||.+|+|+||+++++|.+|++||++.|.|.|.++|||||||+.
T Consensus 1 ms~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~ 80 (189)
T KOG0416|consen 1 MSSGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA 80 (189)
T ss_pred CCCcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+|.||+|.+++.|+|.+.+..|+..+|-.||..||+.+|+|.+||.+|..++++|.+++|++++|||.
T Consensus 81 SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~ 148 (189)
T KOG0416|consen 81 SGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYAT 148 (189)
T ss_pred cCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.1e-43 Score=251.55 Aligned_cols=135 Identities=34% Similarity=0.736 Sum_probs=123.2
Q ss_pred HHHHHHHh---cCCCCcEEEecCC-CceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCCCC
Q 031953 7 RREMDLMK---LMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSG 82 (150)
Q Consensus 7 Rl~~e~~~---~~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~~G 82 (150)
||++|+++ .++.|+++.+.++ |+.+|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+|+||||+ .+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~-~~G 79 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID-ENG 79 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--TTS
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc-ccc
Confidence 88888874 4889999999987 999999999999999999999999999999999999999999999999999 699
Q ss_pred ceeccccCC-CCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhc
Q 031953 83 SVCLDVINQ-TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNN 143 (150)
Q Consensus 83 ~icl~~l~~-~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~ 143 (150)
.||+++|.. .|+|++++.+||.+ |+++|.+|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 80 ~icl~~l~~~~W~p~~~i~~il~~-i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 80 RICLDILNPESWSPSYTIESILLS-IQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BBGHGGGTTTTC-TTSHHHHHHHH-HHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred cchhhhhhcccCCcccccccHHHH-HHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999985 59999999999999 9999999999999999999999999999999999984
No 11
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-43 Score=241.82 Aligned_cols=143 Identities=25% Similarity=0.515 Sum_probs=135.0
Q ss_pred CCC-hHHHHHHHHHhc---CCCCcEEEecC-CCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccccc
Q 031953 1 MSS-PSKRREMDLMKL---MMSDYKVEMIN-DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~~---~~~~~~v~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hp 75 (150)
|+. |.|||++|++++ +++|+.+.+.+ +|+++|.|.|.||++|+|+||.|..++.||.|||.+||+++|...+|||
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP 80 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP 80 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence 664 899999999976 78999998886 5899999999999999999999999999999999999999999999999
Q ss_pred ceeCCCCceeccccC-------------CCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhh
Q 031953 76 NVDELSGSVCLDVIN-------------QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGN 142 (150)
Q Consensus 76 nV~~~~G~icl~~l~-------------~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~ 142 (150)
||+ .+|+||+++|- +.|+|.++++.||++ +.+||.+||.++++|.+|+.++++|+++|++.||+.
T Consensus 81 Niy-~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLS-V~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~l 158 (165)
T KOG0426|consen 81 NIY-PDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLS-VVSMLAEPNDESGANVDACKMWREDREEFEKIAKRL 158 (165)
T ss_pred ccc-CCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHH-HHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHH
Confidence 999 59999999982 579999999999999 999999999999999999999999999999999999
Q ss_pred ccc
Q 031953 143 NPS 145 (150)
Q Consensus 143 ~~~ 145 (150)
++|
T Consensus 159 vrK 161 (165)
T KOG0426|consen 159 VRK 161 (165)
T ss_pred HHH
Confidence 876
No 12
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-43 Score=245.91 Aligned_cols=139 Identities=33% Similarity=0.657 Sum_probs=132.6
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 4 ~~~Rl~~e~~~~---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
..|||+.|+..+ ..+||++.|+++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|.|++|||||| .
T Consensus 30 V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD-~ 108 (175)
T KOG0421|consen 30 VTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD-L 108 (175)
T ss_pred HHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc-c
Confidence 479999999987 457899999999999999999999999999999999999999999999999999999999999 6
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccc
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPS 145 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~ 145 (150)
.|.||+|||++.|+..++++.||++ ||+||-+||.++|+|..||+++. |.++|.+.+.+.-++
T Consensus 109 ~GnIcLDILkdKWSa~YdVrTILLS-iQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 109 SGNICLDILKDKWSAVYDVRTILLS-IQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred cccchHHHHHHHHHHHHhHHHHHHH-HHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 9999999999999999999999999 99999999999999999999988 999999998877554
No 13
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.3e-42 Score=247.73 Aligned_cols=136 Identities=38% Similarity=0.764 Sum_probs=129.7
Q ss_pred HHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCCCC
Q 031953 6 KRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSG 82 (150)
Q Consensus 6 ~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~~G 82 (150)
|||++|+++ .++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.++++||||+ .+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~-~~G 80 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD-ENG 80 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC-CCC
Confidence 688888774 4678999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred ceeccccCCC-CCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhc
Q 031953 83 SVCLDVINQT-WSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNN 143 (150)
Q Consensus 83 ~icl~~l~~~-W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~ 143 (150)
.||++++... |+|++++++||.+ |+++|.+|+.++++|.+||++|++|+++|.++||+|+
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~-i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 81 KICLSILKTHGWSPAYTLRTVLLS-LQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCchhhcCCCCcCCcCcHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 9999999877 9999999999999 9999999999999999999999999999999999975
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.8e-41 Score=242.96 Aligned_cols=140 Identities=34% Similarity=0.691 Sum_probs=132.2
Q ss_pred HHHHHHHHh---cCCCCcEEEecCC-CceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCCC
Q 031953 6 KRREMDLMK---LMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (150)
Q Consensus 6 ~Rl~~e~~~---~~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~~ 81 (150)
+||++|++. ..++|+++.+.++ |+++|+++|.||++|+|+||.|++.|.||++||++||+|+|.++++||||++ +
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~-~ 79 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDS-S 79 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECC-C
Confidence 588888774 4678999988876 9999999999999999999999999999999999999999999999999995 9
Q ss_pred CceeccccC-CCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccC
Q 031953 82 GSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQS 147 (150)
Q Consensus 82 G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 147 (150)
|.||++++. ++|+|+++++++|.+ |+++|.+|+.++++|.+|+++|++|+++|.++||++++|++
T Consensus 80 G~icl~~l~~~~W~p~~~l~~il~~-i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 80 GEICLDILKQEKWSPATTLETVLLS-IQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCEehhhcCCCCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999998 899999999999999 99999999999999999999999999999999999999864
No 15
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-39 Score=228.50 Aligned_cols=141 Identities=33% Similarity=0.704 Sum_probs=126.3
Q ss_pred hHHHHHHHHHhc-CCCCcEEEec--CCC--ceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccccccee
Q 031953 4 PSKRREMDLMKL-MMSDYKVEMI--NDG--MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (150)
Q Consensus 4 ~~~Rl~~e~~~~-~~~~~~v~~~--~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~ 78 (150)
+.-|+++|+..+ .+++++.... .++ ..+..++|. |+++.|+||.|.|.+.+|+.||++||+|+|.|+|||||||
T Consensus 29 a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId 107 (184)
T KOG0420|consen 29 ALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNID 107 (184)
T ss_pred HHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcC
Confidence 567899988765 5567664332 233 336999996 9999999999999999999999999999999999999999
Q ss_pred CCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccC
Q 031953 79 ELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQS 147 (150)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 147 (150)
.+|.||++||+++|+|+.+|.+|+.+ ++.||.+|+++||+|.+||..+++|++.|+.+||+....++
T Consensus 108 -~~GnVCLnILRedW~P~lnL~sIi~G-L~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 108 -LDGNVCLNILREDWRPVLNLNSIIYG-LQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred -CcchHHHHHHHhcCccccchHHHHHH-HHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 59999999999999999999999999 99999999999999999999999999999999999987764
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-38 Score=217.73 Aligned_cols=141 Identities=28% Similarity=0.580 Sum_probs=130.0
Q ss_pred hHHHHHHHHHhcCCCCc----EEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeC
Q 031953 4 PSKRREMDLMKLMMSDY----KVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (150)
Q Consensus 4 ~~~Rl~~e~~~~~~~~~----~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~ 79 (150)
|.+||.+|+..+...+. .++.+++|+..|.+.|. |++.||..|.|+++|.||.+|||+||+|.|.|+|||||||+
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe 81 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDE 81 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCC
Confidence 46999999887643332 35667789999999997 99999999999999999999999999999999999999996
Q ss_pred CCCceeccccC-CCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccC
Q 031953 80 LSGSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQS 147 (150)
Q Consensus 80 ~~G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 147 (150)
.|.+|+.++. ++|.|+.+..+||+. +..++.+|+++.|++.|+|..|.+|+..|.++|.++++|+|
T Consensus 82 -~gqvClPiis~EnWkP~T~teqVlqa-Li~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~ 148 (153)
T KOG0422|consen 82 -KGQVCLPIISAENWKPATRTEQVLQA-LIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYS 148 (153)
T ss_pred -CCceeeeeeecccccCcccHHHHHHH-HHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhc
Confidence 7999999986 899999999999999 99999999999999999999999999999999999999987
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-36 Score=213.48 Aligned_cols=142 Identities=25% Similarity=0.558 Sum_probs=134.9
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 4 ~~~Rl~~e~~~~---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
..+.+.+|++.+ ++.||.|.+.++|.....+.|.||.||||++|.|+..+.+..|||.+||+-+|.|+||||||. .
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-a 89 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-A 89 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-c
Confidence 367888888855 889999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccC
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQS 147 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 147 (150)
+|+||.+.|+.+|+|.++|+.||.. |.+||..|++++++|.+|.++..+|.++|.++||-++.-++
T Consensus 90 NGEICVNtLKkDW~p~LGirHvLlt-ikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa 155 (223)
T KOG0423|consen 90 NGEICVNTLKKDWNPSLGIRHVLLT-IKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHA 155 (223)
T ss_pred CceehhhhhhcccCcccchhhHhhh-hheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999 99999999999999999999999999999999999876554
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-29 Score=173.25 Aligned_cols=116 Identities=25% Similarity=0.582 Sum_probs=102.8
Q ss_pred hHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccc-cccceeC
Q 031953 4 PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPNVDE 79 (150)
Q Consensus 4 ~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~HpnV~~ 79 (150)
|.+|||||+.+ .+|+|+... ..+|+.+|.+.+.|.+||+|+|.+|.+.+.||+.||++.|.|.|..++ .||+|+
T Consensus 16 at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY- 93 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY- 93 (161)
T ss_pred HHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee-
Confidence 67999999875 488999888 667999999999999999999999999999999999999999999986 899999
Q ss_pred CCCceeccccCCCCCCcCCHHHHHHHHHHHhccC-CCCCCCccH
Q 031953 80 LSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLY-PNPSDPLNG 122 (150)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~-p~~~~~~n~ 122 (150)
++|.||+++|.++|+|++++.+|.++ |-+||.+ ..-..|.+.
T Consensus 94 SNGHICL~iL~d~WsPAmsv~SvClS-IlSMLSSs~eKqrP~Dn 136 (161)
T KOG0427|consen 94 SNGHICLDILYDSWSPAMSVQSVCLS-ILSMLSSSKEKQRPTDN 136 (161)
T ss_pred cCCeEEEEeecccCCcchhhHHHHHH-HHHHHccCccccCCCcc
Confidence 69999999999999999999999999 7777754 444444433
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-27 Score=176.14 Aligned_cols=131 Identities=18% Similarity=0.426 Sum_probs=103.1
Q ss_pred CCC--hHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecc--cc
Q 031953 1 MSS--PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK--IY 73 (150)
Q Consensus 1 Ms~--~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~--i~ 73 (150)
|++ |.+||+||++. .+.+++.++|.++|+.+||.+|.||++|||+||.|+.+|.||++||++||.|++.|+ .|
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRF 80 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRF 80 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCce
Confidence 676 78999999874 588999999999999999999999999999999999999999999999999999996 33
Q ss_pred ccceeCCCCceecccc---CCCCCCcCCHHHHHHHHHHHhcc-CCCCCCCcc-HHHHHHHHhCHHHHH
Q 031953 74 HPNVDELSGSVCLDVI---NQTWSPMFDLVNVFEVFLPQLLL-YPNPSDPLN-GEAAALMMRDRTAYD 136 (150)
Q Consensus 74 HpnV~~~~G~icl~~l---~~~W~p~~~i~~il~~~i~~ll~-~p~~~~~~n-~~a~~~~~~~~~~f~ 136 (150)
.+ +-++||++- .+.|+|.+++.+||.+++..|+. +|...+... ..-.++|..+.-+|+
T Consensus 81 kt-----ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI~tS~~~kr~lA~~SlaFN 143 (244)
T KOG0894|consen 81 KT-----NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSIETSDQDKRMLAKSSLAFN 143 (244)
T ss_pred ec-----CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHhhhhhc
Confidence 33 367999775 58999999999999994444443 344443322 223334445544444
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=8.3e-24 Score=156.86 Aligned_cols=136 Identities=20% Similarity=0.333 Sum_probs=121.5
Q ss_pred HHHHHHH---hcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCC--CCCeEEEeccccccceeCCC
Q 031953 7 RREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPY--KSPSIGFVNKIYHPNVDELS 81 (150)
Q Consensus 7 Rl~~e~~---~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~--~pP~v~f~t~i~HpnV~~~~ 81 (150)
-|+.|+. +...+|++|.|+-.|-+.|.++|++ ..|+|.||+|+|+|.+|++||. +.|+|.|.+.++||+|.+.+
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~s 101 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKS 101 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCc
Confidence 4555654 4577899999999999999999996 5678999999999999999995 69999999999999999999
Q ss_pred CceeccccCCCCCCc-CCHHHHHHHHHHHhccCCCCCCC--ccHHHHHHHHhCHHHHHHHHHhhcc
Q 031953 82 GSVCLDVINQTWSPM-FDLVNVFEVFLPQLLLYPNPSDP--LNGEAAALMMRDRTAYDQRVKGNNP 144 (150)
Q Consensus 82 G~icl~~l~~~W~p~-~~i~~il~~~i~~ll~~p~~~~~--~n~~a~~~~~~~~~~f~~~~r~~~~ 144 (150)
+++|++-....|+-. .+|+++|.. +|.+|++|+.+.+ .|++|+.+|++++++|.++|+++|+
T Consensus 102 keLdl~raf~eWRk~ehhiwqvL~y-lqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk 166 (258)
T KOG0429|consen 102 KELDLNRAFPEWRKEEHHIWQVLVY-LQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVK 166 (258)
T ss_pred cceeHhhhhhhhhccccHHHHHHHH-HHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHH
Confidence 999998877779765 589999988 9999999988765 5999999999999999999999986
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.1e-20 Score=142.39 Aligned_cols=109 Identities=23% Similarity=0.511 Sum_probs=90.9
Q ss_pred hHHHHHHHHHhc--CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCCC
Q 031953 4 PSKRREMDLMKL--MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (150)
Q Consensus 4 ~~~Rl~~e~~~~--~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~~ 81 (150)
+.|||++|...+ +...+-..+.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+-.+|+--..- .+
T Consensus 12 aVkRlmkEa~El~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE---~n 88 (314)
T KOG0428|consen 12 AVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFE---VN 88 (314)
T ss_pred HHHHHHHHHHHhcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCcee---eC
Confidence 689999998765 4455778899999999999999999999999999999999999999999999998532222 34
Q ss_pred Cceecccc---CCCCCCcCCHHHHHHHHHHHhccCCC
Q 031953 82 GSVCLDVI---NQTWSPMFDLVNVFEVFLPQLLLYPN 115 (150)
Q Consensus 82 G~icl~~l---~~~W~p~~~i~~il~~~i~~ll~~p~ 115 (150)
..||+++- .+.|.|+++++..|+.+|-.|=..|+
T Consensus 89 kKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 89 KKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred ceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 68999886 48999999999999995554445554
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.1e-16 Score=140.25 Aligned_cols=97 Identities=26% Similarity=0.533 Sum_probs=89.3
Q ss_pred CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecc--ccccceeCCCCceeccccC---
Q 031953 16 MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK--IYHPNVDELSGSVCLDVIN--- 90 (150)
Q Consensus 16 ~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~--i~HpnV~~~~G~icl~~l~--- 90 (150)
.+.|+.|+..++.+-...+.|.||.||||.+|.|.|++.||++||.+||.|...+. .+.||.++ .|+||+++|.
T Consensus 867 ~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~-~g~vc~s~l~tw~ 945 (1101)
T KOG0895|consen 867 LPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYE-DGKVCLSLLNTWH 945 (1101)
T ss_pred CCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccccc-ccceehhhhcccc
Confidence 67899999999988888899999999999999999999999999999999999985 68999995 9999999995
Q ss_pred ----CCCCCcCCHHHHHHHHHHHhccCC
Q 031953 91 ----QTWSPMFDLVNVFEVFLPQLLLYP 114 (150)
Q Consensus 91 ----~~W~p~~~i~~il~~~i~~ll~~p 114 (150)
+.|+|+-++.++|.+ ||.|.-+.
T Consensus 946 g~~~e~w~~~s~~lq~l~s-~q~l~l~~ 972 (1101)
T KOG0895|consen 946 GRGNEVWNPSSSILQVLVS-IQGLVLNE 972 (1101)
T ss_pred CCCccccCcchhHHHHHHH-hhhhhccc
Confidence 679999999999999 99988543
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.6e-14 Score=125.58 Aligned_cols=108 Identities=26% Similarity=0.522 Sum_probs=98.4
Q ss_pred HHHHHHHHH---hcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecc---cccccee
Q 031953 5 SKRREMDLM---KLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK---IYHPNVD 78 (150)
Q Consensus 5 ~~Rl~~e~~---~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~---i~HpnV~ 78 (150)
.+|+++|+. +..++|+.+.+.+..+...++.|.||.||||++|.|.|.|.||..||..||.|.+.|. .+.||.+
T Consensus 284 skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlY 363 (1101)
T KOG0895|consen 284 SKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLY 363 (1101)
T ss_pred HHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcc
Confidence 578999976 4478899999999999999999999999999999999999999999999999999987 6899999
Q ss_pred CCCCceeccccC-------CCCCCc-CCHHHHHHHHHHHhccCC
Q 031953 79 ELSGSVCLDVIN-------QTWSPM-FDLVNVFEVFLPQLLLYP 114 (150)
Q Consensus 79 ~~~G~icl~~l~-------~~W~p~-~~i~~il~~~i~~ll~~p 114 (150)
. +|+||+++|. +.|+|. .++.++|.+ ||.+..+-
T Consensus 364 n-~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~s-IQ~Li~~e 405 (1101)
T KOG0895|consen 364 N-DGKVCLSLLGTWTGSRREKWTPNGSSLLQVLES-IQGLILNE 405 (1101)
T ss_pred c-CceEEeeeeeecccccccCCCccccchhhhhhh-hhhhhccc
Confidence 5 9999999983 689998 799999999 99988654
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.8e-14 Score=98.13 Aligned_cols=107 Identities=19% Similarity=0.284 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhc----CCCCcEEEecCC-C--ceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccc
Q 031953 4 PSKRREMDLMKL----MMSDYKVEMIND-G--MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (150)
Q Consensus 4 ~~~Rl~~e~~~~----~~~~~~v~~~~~-~--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 76 (150)
+.-||++|+.+- -+..++..+.++ | +..|...|.||+.|+||+.+|.++|...++||..||.|+|.+++.-..
T Consensus 6 rnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g 85 (138)
T KOG0896|consen 6 RNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG 85 (138)
T ss_pred cchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence 467899888742 333355555543 3 579999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceecccc--CCCCCCcCCHHHHHHHHHHHhc
Q 031953 77 VDELSGSVCLDVI--NQTWSPMFDLVNVFEVFLPQLL 111 (150)
Q Consensus 77 V~~~~G~icl~~l--~~~W~p~~~i~~il~~~i~~ll 111 (150)
|+..+|.|.-..+ -.+|+-.++++.+|.. ++.++
T Consensus 86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~-lr~~m 121 (138)
T KOG0896|consen 86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQ-LRKEM 121 (138)
T ss_pred cccCCCccCccccchhhcccccchhhHHHHh-hhHHH
Confidence 9988888865333 3789999999999988 65433
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.55 E-value=3.6e-07 Score=64.51 Aligned_cols=66 Identities=27% Similarity=0.636 Sum_probs=58.7
Q ss_pred CCcEEEEEEEeCCCCCCCCCeEEEeccc---cccceeCCCCceec---cccCCCCCCcCCHHHHHHHHHHHhcc
Q 031953 45 QGGVWKIRVELPDAYPYKSPSIGFVNKI---YHPNVDELSGSVCL---DVINQTWSPMFDLVNVFEVFLPQLLL 112 (150)
Q Consensus 45 ~gg~f~~~i~fp~~yP~~pP~v~f~t~i---~HpnV~~~~G~icl---~~l~~~W~p~~~i~~il~~~i~~ll~ 112 (150)
.|+.+.+.|.+|++||..||.|....+- +=|||+. +|.+|+ ...-+.|.|...+.++|.+ ...+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~~D~~~P~~~~~~~l~~-a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELVLDPWDPEGIIADCLER-AIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcccCccCHHHHHHHHHHH-HHHHHH
Confidence 6899999999999999999999988654 6899995 999999 6777899999999999988 777775
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=3.7e-07 Score=61.87 Aligned_cols=92 Identities=16% Similarity=0.324 Sum_probs=63.7
Q ss_pred EEEEEEeCCCCCCCCCeEEEecccc-ccceeCCCCceeccccC-CCCCCcCCHHHHHHHHHHHhccCCC--CCCCccHHH
Q 031953 49 WKIRVELPDAYPYKSPSIGFVNKIY-HPNVDELSGSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPN--PSDPLNGEA 124 (150)
Q Consensus 49 f~~~i~fp~~yP~~pP~v~f~t~i~-HpnV~~~~G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~~p~--~~~~~n~~a 124 (150)
..+.+.|+++||+.||.++-..++- -.-|- .+|+||+.+|. ++|+.+++++.++++ |..++-... ...+++.+-
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl-~ggAIcmellt~qgwssay~Ve~vi~q-iaatlVkG~~ri~~~a~k~s 90 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVL-EGGAICMELLTKQGWSSAYEVERVIMQ-IAATLVKGGARIEFPAEKSS 90 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEe-cchhhHHHHHccccccchhhHHHHHHH-HHHHhhccceeEecCcchhh
Confidence 4577889999999999998776532 22333 47899999985 889999999999999 777765543 344554443
Q ss_pred HHHHH--hCHHHHHHHHHhhc
Q 031953 125 AALMM--RDRTAYDQRVKGNN 143 (150)
Q Consensus 125 ~~~~~--~~~~~f~~~~r~~~ 143 (150)
. +|. .--+.|.+.++..-
T Consensus 91 k-~~s~~qa~~sfksLv~~he 110 (122)
T KOG0897|consen 91 K-LYSHSQAQQSFKSLVQIHE 110 (122)
T ss_pred h-HhhHHHHHHHHHHHHHHHH
Confidence 3 442 34445665555543
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.07 E-value=2.4e-05 Score=54.40 Aligned_cols=76 Identities=26% Similarity=0.516 Sum_probs=50.6
Q ss_pred EEEeCCCCCCCCCcEE--EEEEEeCCCCCCCCCeEEEeccc-----cccceeCCCCceeccccCCCCCC-cCCHHHHHHH
Q 031953 34 VEFNGPKESSYQGGVW--KIRVELPDAYPYKSPSIGFVNKI-----YHPNVDELSGSVCLDVINQTWSP-MFDLVNVFEV 105 (150)
Q Consensus 34 ~~i~gp~~t~y~gg~f--~~~i~fp~~yP~~pP~v~f~t~i-----~HpnV~~~~G~icl~~l~~~W~p-~~~i~~il~~ 105 (150)
+.+.|--.-.|+|..| .+.|.+|.+||.+||.+...... -+.+|| .+|+|.+..|. +|++ ..++.+++..
T Consensus 33 L~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd-~~G~v~~pyL~-~W~~~~s~L~~lv~~ 110 (121)
T PF05743_consen 33 LCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVD-SNGRVYLPYLQ-NWNPPSSNLVDLVQE 110 (121)
T ss_dssp EEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB--TTSBB-SHHHH-T--TTTS-HHHHHHH
T ss_pred EEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeEC-CCCCEeCchhc-cCCCCCCCHHHHHHH
Confidence 3344433335888888 67888999999999999887542 244999 59999988884 5766 7788888887
Q ss_pred HHHHhcc
Q 031953 106 FLPQLLL 112 (150)
Q Consensus 106 ~i~~ll~ 112 (150)
++..|.
T Consensus 111 -l~~~F~ 116 (121)
T PF05743_consen 111 -LQAVFS 116 (121)
T ss_dssp -HHHCCC
T ss_pred -HHHHHh
Confidence 776664
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.0047 Score=49.60 Aligned_cols=77 Identities=29% Similarity=0.460 Sum_probs=56.6
Q ss_pred EeCCCCCCCCCcEE--EEEEEeCCCCCCCCCeEEEecc-----ccccceeCCCCceeccccCCCCCC-cCCHHHHHHHHH
Q 031953 36 FNGPKESSYQGGVW--KIRVELPDAYPYKSPSIGFVNK-----IYHPNVDELSGSVCLDVINQTWSP-MFDLVNVFEVFL 107 (150)
Q Consensus 36 i~gp~~t~y~gg~f--~~~i~fp~~yP~~pP~v~f~t~-----i~HpnV~~~~G~icl~~l~~~W~p-~~~i~~il~~~i 107 (150)
+.|=--.+|.|..| .+.|.+.+.||..||.+..... --|-+|| .+|.|.|..|. +|.+ +.++..++.. +
T Consensus 55 ~~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd-~nG~V~LPYLh-~W~~pssdLv~Liq~-l 131 (365)
T KOG2391|consen 55 LDGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVD-PNGKVYLPYLH-NWDPPSSDLVGLIQE-L 131 (365)
T ss_pred ccCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccC-CCCeEechhhc-cCCCccchHHHHHHH-H
Confidence 33444457888877 5778899999999999976543 1489999 59999999985 5755 5677777766 6
Q ss_pred HHhccCCC
Q 031953 108 PQLLLYPN 115 (150)
Q Consensus 108 ~~ll~~p~ 115 (150)
...|.++.
T Consensus 132 ~a~f~~~p 139 (365)
T KOG2391|consen 132 IAAFSEDP 139 (365)
T ss_pred HHHhcCCC
Confidence 66665543
No 29
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=96.69 E-value=0.03 Score=38.93 Aligned_cols=92 Identities=21% Similarity=0.356 Sum_probs=64.0
Q ss_pred cCCCCcEEEecCCCceeEEEEEeC--CCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCCCCce--ecccc-
Q 031953 15 LMMSDYKVEMINDGMQEFYVEFNG--PKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSV--CLDVI- 89 (150)
Q Consensus 15 ~~~~~~~v~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~~G~i--cl~~l- 89 (150)
+...|+..+...+.-..|.+ |.| -+.+.|.+..-.+-|.+|+.||..+|-+.+..+-.... ..|.+ |-+..
T Consensus 9 L~~~g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~---~G~~iP~~~~~~~ 84 (122)
T PF14462_consen 9 LDGRGLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLA---DGGPIPNAAEVTQ 84 (122)
T ss_pred HHhcCceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEcc---CCCcCCchhcchh
Confidence 34467888887777677766 665 46677999999999999999999999887766533222 12333 33221
Q ss_pred -------------CCCCCCcC-CHHHHHHHHHHHhc
Q 031953 90 -------------NQTWSPMF-DLVNVFEVFLPQLL 111 (150)
Q Consensus 90 -------------~~~W~p~~-~i~~il~~~i~~ll 111 (150)
...|+|.. +|.+.|.. |...|
T Consensus 85 ~~~G~~wQrWSRH~~~W~P~~D~l~T~l~~-v~~~L 119 (122)
T PF14462_consen 85 TFDGRTWQRWSRHNNPWRPGVDDLWTHLAR-VEHAL 119 (122)
T ss_pred hcCCeeeeeecCCCCCCCCCCCcHHHHHHH-HHHHH
Confidence 24688866 88888877 66554
No 30
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.43 E-value=0.0011 Score=47.01 Aligned_cols=55 Identities=20% Similarity=0.501 Sum_probs=25.3
Q ss_pred EEEEEEEeCCCCCCCCCeEEEeccc-cccceeCCCCceeccccC-CCC---CCcCCHHHHH
Q 031953 48 VWKIRVELPDAYPYKSPSIGFVNKI-YHPNVDELSGSVCLDVIN-QTW---SPMFDLVNVF 103 (150)
Q Consensus 48 ~f~~~i~fp~~yP~~pP~v~f~t~i-~HpnV~~~~G~icl~~l~-~~W---~p~~~i~~il 103 (150)
.|.+++.+|..||..||.|..-.-- --.-.+ ..|.||++... .-| .|.++|...+
T Consensus 76 EF~~eFdIP~tYP~t~pEi~lPeLdGKTaKMY-RGGkIClt~HFkPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 76 EFDLEFDIPVTYPTTAPEIALPELDGKTAKMY-RGGKICLTDHFKPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp EEEEEEE--TTTTTS----B-GGGTTT-SSBC-CCCBB---TTHHHHHHCTTTT--HHHHH
T ss_pred EEeeecCCCccCCCCCcceeccccCCchhhhh-cCceEeeecccchhhhhcCCchhHHHHH
Confidence 4556777899999999999763210 011223 36999998764 334 5677777665
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.16 E-value=0.065 Score=35.64 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=29.1
Q ss_pred CCceeEEEEEe--CCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecc
Q 031953 27 DGMQEFYVEFN--GPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (150)
Q Consensus 27 ~~~~~w~~~i~--gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 71 (150)
.+...+.+.+. ....+.-....+.+.+.||++||..+|.+...+.
T Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 27 KSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp SSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred CCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 34455566662 2234445567899999999999999999987764
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.25 E-value=0.42 Score=31.38 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=22.3
Q ss_pred CcEEEEEEEeCCCCCCCCCeEEEecc
Q 031953 46 GGVWKIRVELPDAYPYKSPSIGFVNK 71 (150)
Q Consensus 46 gg~f~~~i~fp~~yP~~pP~v~f~t~ 71 (150)
...+.+.+.+|++||..+|.|.+.+.
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 45689999999999999999988763
No 33
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=0.13 Score=36.08 Aligned_cols=90 Identities=19% Similarity=0.495 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCc----------EEEEEEEeCCCCCCCCCeEEEeccccc
Q 031953 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGG----------VWKIRVELPDAYPYKSPSIGFVNKIYH 74 (150)
Q Consensus 5 ~~Rl~~e~~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~fp~~yP~~pP~v~f~t~i~H 74 (150)
.+||.+|++.+.. +|+-..++-..|.-.=-.++||-|-|. .|.+++.+|-.||...|.+..
T Consensus 29 vqrlkeey~sli~---yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeial------ 99 (167)
T KOG3357|consen 29 VQRLKEEYQSLIA---YVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIAL------ 99 (167)
T ss_pred HHHHHHHHHHHHH---HHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccc------
Confidence 4788888875411 111122222233222235777777763 355666789999999998865
Q ss_pred cceeC------CCCceeccc-cCCCCC---CcCCHHHHH
Q 031953 75 PNVDE------LSGSVCLDV-INQTWS---PMFDLVNVF 103 (150)
Q Consensus 75 pnV~~------~~G~icl~~-l~~~W~---p~~~i~~il 103 (150)
|-+|- ..|.||+.- .+.-|. |..++...+
T Consensus 100 peldgktakmyrggkiclt~hfkplwarn~pkfgiaha~ 138 (167)
T KOG3357|consen 100 PELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAM 138 (167)
T ss_pred cccCchhhhhhcCceEeeccccchhhhhcCcchhHHHHH
Confidence 33331 368999954 345564 444555443
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=91.39 E-value=0.32 Score=35.46 Aligned_cols=61 Identities=20% Similarity=0.372 Sum_probs=45.9
Q ss_pred EEEEEeCCCCCCCCCeEEEeccc---cccceeCCC-----CceeccccC-CCCCCcCCHHHHHHHHHHHhcc
Q 031953 50 KIRVELPDAYPYKSPSIGFVNKI---YHPNVDELS-----GSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLL 112 (150)
Q Consensus 50 ~~~i~fp~~yP~~pP~v~f~t~i---~HpnV~~~~-----G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~ 112 (150)
.+.|.|+.+||..+|.|.+.-.- .+||++. . ..+|+---. ..|.+..++..+|.. |..-|.
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~r-l~~Wl~ 125 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGPWSEWRPSWGPEGFLDR-LFDWLR 125 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCCHHHhhhccCHHHHHHH-HHHHHH
Confidence 46789999999999987766533 3577773 4 678985433 569999999999988 776663
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.72 E-value=7 Score=35.30 Aligned_cols=65 Identities=20% Similarity=0.386 Sum_probs=44.3
Q ss_pred HHHHHHHHhc--CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEE-EEEEEeCCCCCCC-CCeEEEecc
Q 031953 6 KRREMDLMKL--MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVW-KIRVELPDAYPYK-SPSIGFVNK 71 (150)
Q Consensus 6 ~Rl~~e~~~~--~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f-~~~i~fp~~yP~~-pP~v~f~t~ 71 (150)
+-|.+|+.-+ ..+.+.++-.+..-..-.+.+-||-... +|-+| ++.|.||.+||.+ +|+.+|..+
T Consensus 423 QnLgeE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 423 QNLGEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhHHhHHhHhhccccccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 4566666633 3355666655555567777887775444 44454 8899999999995 899999754
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=82.01 E-value=5.4 Score=30.35 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEEEEeCCCCCCCCCeEEE
Q 031953 48 VWKIRVELPDAYPYKSPSIGF 68 (150)
Q Consensus 48 ~f~~~i~fp~~yP~~pP~v~f 68 (150)
.+.+.+.++.+||..+|.+.+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred cEEEEEEccCCCCCCCcceec
Confidence 788999999999999999943
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=75.45 E-value=6.8 Score=31.25 Aligned_cols=79 Identities=16% Similarity=0.313 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCCCCcee
Q 031953 6 KRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVC 85 (150)
Q Consensus 6 ~Rl~~e~~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~~G~ic 85 (150)
.+|.+|+..+.-+...---.+++.....+.+.. +.....++|.++.+||.++|.+...-++ .
T Consensus 102 s~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D------~~R~H~l~l~l~~~yp~~~p~~~~~~P~-~----------- 163 (291)
T PF09765_consen 102 SNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFD------SSRQHYLELKLPSNYPFEPPSCSLDLPI-P----------- 163 (291)
T ss_dssp -CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEET------TCEEEEEEEETTTTTTTSEEEECS-TTS-------------
T ss_pred HHHHHHHHHhccccceEEecCCCccEEEEEEEc------CCceEEEEEEECCCCCCCCceeeCCCCc-c-----------
Confidence 456667766533222222235577777777762 1257789999999999999975322111 1
Q ss_pred ccccCCCCCC-cCCHHHHHHH
Q 031953 86 LDVINQTWSP-MFDLVNVFEV 105 (150)
Q Consensus 86 l~~l~~~W~p-~~~i~~il~~ 105 (150)
+...|.+ ..++.+++..
T Consensus 164 ---~~~~w~~~~ssL~~v~~q 181 (291)
T PF09765_consen 164 ---FSLSWSPSQSSLKDVVQQ 181 (291)
T ss_dssp ---HHHHHHCHT-SHHHHHHH
T ss_pred ---hhhhhcccccCHHHHHHH
Confidence 1124777 6678877766
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=61.74 E-value=13 Score=30.30 Aligned_cols=28 Identities=25% Similarity=0.621 Sum_probs=23.2
Q ss_pred CcEEEEEEEeCCCCCCCCCeEEEeccccc
Q 031953 46 GGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (150)
Q Consensus 46 gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 74 (150)
+-.|-+.|.+|..||...|.++|.+ +||
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS-~yH 332 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS-VYH 332 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe-ecc
Confidence 3357888899999999999999987 344
No 39
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=53.71 E-value=22 Score=25.14 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=22.4
Q ss_pred CcEEEEEEEeCCCCC-CCCCeEEEec
Q 031953 46 GGVWKIRVELPDAYP-YKSPSIGFVN 70 (150)
Q Consensus 46 gg~f~~~i~fp~~yP-~~pP~v~f~t 70 (150)
.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 489999999999999 9999998863
No 40
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=52.32 E-value=60 Score=20.82 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=28.9
Q ss_pred eeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccc
Q 031953 30 QEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (150)
Q Consensus 30 ~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 73 (150)
++|.+.+.|+.+..-..-+=++...+.+.|+. |...+..+-|
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pPF 43 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPPF 43 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTTE
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCCC
Confidence 68999999988865445566888899998876 7766666633
No 41
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=49.39 E-value=27 Score=25.99 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.5
Q ss_pred CcEEEEEEEeCCCCCCCCCeEEEec
Q 031953 46 GGVWKIRVELPDAYPYKSPSIGFVN 70 (150)
Q Consensus 46 gg~f~~~i~fp~~yP~~pP~v~f~t 70 (150)
.|.|.|+-.+|--||..+|.|.|.-
T Consensus 86 ~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 86 DGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CccEEEEEECCCCCCCCCceEEEEE
Confidence 5899999999999999999998864
No 42
>PHA02131 hypothetical protein
Probab=47.95 E-value=6 Score=23.70 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=33.0
Q ss_pred ccccc-ceeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHH---HHHHhhcccc
Q 031953 71 KIYHP-NVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYD---QRVKGNNPSQ 146 (150)
Q Consensus 71 ~i~Hp-nV~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~---~~~r~~~~~~ 146 (150)
+|||| +|...+|.--.|.++...+-..+ ..-+|.+....++ .|++|..+|. +.||+-++++
T Consensus 2 kiyhpqhiakvngitkvdmirgh~~~g~~--------c~imfk~~~v~dc-------tfk~dtaqfr~mek~ar~vaaeh 66 (70)
T PHA02131 2 KIYHPQHIAKVNGITKVDMIRGHYRFGIS--------CWIMFKNDQVIDC-------TFKNDTAQFRSMEKAARQVAAEH 66 (70)
T ss_pred cccchhHhhhhcCceEEEEeccceecceE--------EEEEEcCCCEEEe-------eecCcHHHHhhHHHHHHHHHHhh
Confidence 47888 45555676666666543332211 1223444443333 2455555554 4566666666
Q ss_pred CCC
Q 031953 147 SYV 149 (150)
Q Consensus 147 ~~~ 149 (150)
-|+
T Consensus 67 qyt 69 (70)
T PHA02131 67 QYT 69 (70)
T ss_pred ccc
Confidence 554
No 43
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=47.58 E-value=29 Score=25.40 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=14.8
Q ss_pred ecccccc---ceeCCCCceecccc
Q 031953 69 VNKIYHP---NVDELSGSVCLDVI 89 (150)
Q Consensus 69 ~t~i~Hp---nV~~~~G~icl~~l 89 (150)
.|++||. ||+ .+|.||....
T Consensus 89 ~T~Ly~aPf~NV~-~~g~vC~G~~ 111 (175)
T PF14460_consen 89 DTPLYHAPFFNVY-SNGSVCWGNN 111 (175)
T ss_pred CCeeEeCCccccC-CCCcEeeCCC
Confidence 4556664 999 5899999764
No 44
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=43.52 E-value=39 Score=24.38 Aligned_cols=25 Identities=32% Similarity=0.703 Sum_probs=22.1
Q ss_pred CcEEEEEEEeCCCCC-----CCCCeEEEec
Q 031953 46 GGVWKIRVELPDAYP-----YKSPSIGFVN 70 (150)
Q Consensus 46 gg~f~~~i~fp~~yP-----~~pP~v~f~t 70 (150)
.|.|.|+-.+|.-|| ..||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 489999999999999 8999998863
No 45
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=39.53 E-value=49 Score=25.54 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=14.6
Q ss_pred cccccc---ceeCCCCceeccccC
Q 031953 70 NKIYHP---NVDELSGSVCLDVIN 90 (150)
Q Consensus 70 t~i~Hp---nV~~~~G~icl~~l~ 90 (150)
|++||. ||++ +|.||+....
T Consensus 131 T~L~~aPffNV~~-~G~VC~G~~~ 153 (228)
T TIGR03737 131 TKLYQAPLFNVWS-NGEICAGNAR 153 (228)
T ss_pred CeeccCCcCccCC-CCeEeeCCCc
Confidence 446664 9994 8999996653
No 46
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=34.36 E-value=43 Score=29.31 Aligned_cols=29 Identities=28% Similarity=0.765 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEEEeCCCCCC---CCCeEEEecc
Q 031953 42 SSYQGGVWKIRVELPDAYPY---KSPSIGFVNK 71 (150)
Q Consensus 42 t~y~gg~f~~~i~fp~~yP~---~pP~v~f~t~ 71 (150)
++|.=|.|-+ +.+|++||+ +-|-++|.|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4577788877 568999998 5899999997
No 47
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=34.26 E-value=90 Score=24.49 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=29.9
Q ss_pred CceeEEEEEeCCCCCCCCC---cEEEEEEEeC-----CCCCCCCCeEEEecccc
Q 031953 28 GMQEFYVEFNGPKESSYQG---GVWKIRVELP-----DAYPYKSPSIGFVNKIY 73 (150)
Q Consensus 28 ~~~~w~~~i~gp~~t~y~g---g~f~~~i~fp-----~~yP~~pP~v~f~t~i~ 73 (150)
|..-|.+...--+.-..+| +.|+.++.+. .|-||++|+|..+++-|
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 3445777666333333444 4456666654 68899999999998744
No 48
>KOG2851 consensus Eukaryotic-type DNA primase, catalytic (small) subunit [Replication, recombination and repair]
Probab=33.97 E-value=86 Score=26.02 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=24.0
Q ss_pred eeCCCCceeccccC---CCCCCcC--CHHHHHHHHHHHh
Q 031953 77 VDELSGSVCLDVIN---QTWSPMF--DLVNVFEVFLPQL 110 (150)
Q Consensus 77 V~~~~G~icl~~l~---~~W~p~~--~i~~il~~~i~~l 110 (150)
|.+.+|+||..+=- +...|.. +|.+++.. +.++
T Consensus 332 VHP~Tg~VcVPidv~~~d~Fdp~~vPti~~l~eE-l~~~ 369 (412)
T KOG2851|consen 332 VHPKTGRVCVPIDVSKVDEFDPEKVPTISDLLEE-LESL 369 (412)
T ss_pred ccCCCCceEeecchhhccccCcccCCcHHHHHHH-Hhhc
Confidence 44469999986541 5566654 89999988 8777
No 49
>smart00340 HALZ homeobox associated leucin zipper.
Probab=33.71 E-value=30 Score=19.42 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=9.4
Q ss_pred hHHHHHHHHHhc
Q 031953 4 PSKRREMDLMKL 15 (150)
Q Consensus 4 ~~~Rl~~e~~~~ 15 (150)
..+||++|+.++
T Consensus 20 eNrRL~ke~~eL 31 (44)
T smart00340 20 ENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHH
Confidence 468999998754
No 50
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=31.85 E-value=24 Score=25.55 Aligned_cols=14 Identities=43% Similarity=0.890 Sum_probs=11.3
Q ss_pred cccccceeCCCCceec
Q 031953 71 KIYHPNVDELSGSVCL 86 (150)
Q Consensus 71 ~i~HpnV~~~~G~icl 86 (150)
++|||+.| .|.+|.
T Consensus 50 PiYhP~~D--cGD~VV 63 (165)
T KOG3203|consen 50 PIYHPSTD--CGDHVV 63 (165)
T ss_pred CccCCccC--CCCEEE
Confidence 68999999 587764
No 51
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=31.37 E-value=51 Score=19.79 Aligned_cols=15 Identities=20% Similarity=0.618 Sum_probs=9.8
Q ss_pred CCCCCcCCHHHHHHH
Q 031953 91 QTWSPMFDLVNVFEV 105 (150)
Q Consensus 91 ~~W~p~~~i~~il~~ 105 (150)
-+|.|.++|++++..
T Consensus 36 LgW~p~~~L~~~i~~ 50 (62)
T PF13950_consen 36 LGWKPKYSLEDMIRD 50 (62)
T ss_dssp C----SSSHHHHHHH
T ss_pred hCCCcCCCHHHHHHH
Confidence 379999999999987
No 52
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.72 E-value=21 Score=26.78 Aligned_cols=30 Identities=10% Similarity=0.506 Sum_probs=24.5
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhc
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLL 111 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll 111 (150)
.+.+|++++..-|+|.+|.+.-+.. ++.++
T Consensus 135 ~~~f~~sIlDr~Y~pdmt~eea~~l-mkKCv 164 (200)
T KOG0177|consen 135 GSYFCLSILDRYYKPDMTIEEALDL-MKKCV 164 (200)
T ss_pred hhhhhHHHHHhhhCCCCCHHHHHHH-HHHHH
Confidence 5789999999999999999988755 55444
No 53
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=30.63 E-value=17 Score=33.15 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=0.0
Q ss_pred cEEEEEEEeCCCCCCCCCeEEEecc
Q 031953 47 GVWKIRVELPDAYPYKSPSIGFVNK 71 (150)
Q Consensus 47 g~f~~~i~fp~~yP~~pP~v~f~t~ 71 (150)
.+=.+.|.+|.|||..+|.+.+.+.
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHH
Confidence 4556889999999999999887654
No 54
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=30.26 E-value=54 Score=23.06 Aligned_cols=29 Identities=14% Similarity=0.209 Sum_probs=19.4
Q ss_pred CCCceeEEEEEeCCCCCCCC-CcEEEEEEE
Q 031953 26 NDGMQEFYVEFNGPKESSYQ-GGVWKIRVE 54 (150)
Q Consensus 26 ~~~~~~w~~~i~gp~~t~y~-gg~f~~~i~ 54 (150)
+.|...|.|++.|++|++.. +..|-+.+.
T Consensus 44 PGd~~~ytVtV~G~dGs~~~~n~tf~~~Fi 73 (139)
T PF04881_consen 44 PGDPEWYTVTVQGPDGSIRKSNNTFMYKFI 73 (139)
T ss_pred CCCCcceEEEEECCCCcceeccccchheee
Confidence 45777889999999988765 234333333
No 55
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=30.19 E-value=79 Score=23.65 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.1
Q ss_pred CcEEEEEEEeCCCCCC-----CCCeEEEe
Q 031953 46 GGVWKIRVELPDAYPY-----KSPSIGFV 69 (150)
Q Consensus 46 gg~f~~~i~fp~~yP~-----~pP~v~f~ 69 (150)
.|.|.|+-..|-.||. .||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4889999999999998 77777664
No 56
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=28.18 E-value=58 Score=24.77 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=40.5
Q ss_pred CCCCeEEEecccccccee-CCCCceeccccCCCC--CCcCCHHHHHHHHHHHhccCCCCC
Q 031953 61 YKSPSIGFVNKIYHPNVD-ELSGSVCLDVINQTW--SPMFDLVNVFEVFLPQLLLYPNPS 117 (150)
Q Consensus 61 ~~pP~v~f~t~i~HpnV~-~~~G~icl~~l~~~W--~p~~~i~~il~~~i~~ll~~p~~~ 117 (150)
..||-|.|-.+.|...|| .+.|-|--.+...+| .|.-++.+-|.. |..++-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkr-if~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKR-IFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHH-HHHHhCCCccc
Confidence 468999999999999988 333444334445555 677788888888 88888777543
No 57
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.82 E-value=93 Score=23.09 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=19.3
Q ss_pred CcEEEEEEEeCCCCCC-----CCCeEEEe
Q 031953 46 GGVWKIRVELPDAYPY-----KSPSIGFV 69 (150)
Q Consensus 46 gg~f~~~i~fp~~yP~-----~pP~v~f~ 69 (150)
.|.|.|.-.+|--||. .||.|.|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3889999999999995 77766654
No 58
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=27.67 E-value=1.1e+02 Score=24.90 Aligned_cols=39 Identities=23% Similarity=0.478 Sum_probs=28.5
Q ss_pred eEEEEEeCCCCC-CCCCcEEEEEEE---eCCCCCCCCCeEEEec
Q 031953 31 EFYVEFNGPKES-SYQGGVWKIRVE---LPDAYPYKSPSIGFVN 70 (150)
Q Consensus 31 ~w~~~i~gp~~t-~y~gg~f~~~i~---fp~~yP~~pP~v~f~t 70 (150)
.|...+.|-.++ .|++|.+++++. |-.-+ ..-|+|||-.
T Consensus 198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~-qR~PriRfG~ 240 (345)
T COG3866 198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY-QRGPRIRFGM 240 (345)
T ss_pred CCeeeeeccCCcccccCCceeEEEecccccccc-ccCCceEeeE
Confidence 578888886665 899999998887 33333 3456999964
No 59
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=27.25 E-value=82 Score=25.54 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=21.6
Q ss_pred cEEEEEEEeCCCCCCCCCeEEEecc
Q 031953 47 GVWKIRVELPDAYPYKSPSIGFVNK 71 (150)
Q Consensus 47 g~f~~~i~fp~~yP~~pP~v~f~t~ 71 (150)
-.+.+.+..++.||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3567888999999999999999876
No 60
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=27.03 E-value=76 Score=25.04 Aligned_cols=29 Identities=24% Similarity=0.107 Sum_probs=25.3
Q ss_pred CCccHHHHHHHHhCHHHHHHHHHhhcccc
Q 031953 118 DPLNGEAAALMMRDRTAYDQRVKGNNPSQ 146 (150)
Q Consensus 118 ~~~n~~a~~~~~~~~~~f~~~~r~~~~~~ 146 (150)
.-.+.+|+..|..|++.|...+.+.+++.
T Consensus 237 ~F~s~~aa~~F~~~P~~yi~~v~~~ar~~ 265 (281)
T PF12018_consen 237 AFSSREAAYRFAEDPERYIQAVLEKARKN 265 (281)
T ss_pred EeCCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence 34689999999999999999999988764
No 61
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=26.37 E-value=56 Score=18.18 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=17.0
Q ss_pred hCHHHHHHHHHhhccccCCC
Q 031953 130 RDRTAYDQRVKGNNPSQSYV 149 (150)
Q Consensus 130 ~~~~~f~~~~r~~~~~~~~~ 149 (150)
+|+-.|.++++...++++.+
T Consensus 13 ~Dp~~yi~~i~~~~~~yGi~ 32 (42)
T smart00545 13 KDPLAYISKIRPQAEKYGIC 32 (42)
T ss_pred HCHHHHHHHHHHHHhhCCEE
Confidence 58999999999998888764
No 62
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=25.32 E-value=1.2e+02 Score=24.76 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=33.1
Q ss_pred eeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEec-cccccc
Q 031953 30 QEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN-KIYHPN 76 (150)
Q Consensus 30 ~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t-~i~Hpn 76 (150)
..+.+.| ||.|...+-+|.|...||..||-+.|.. .-|+|-
T Consensus 54 DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 54 DRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred ceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 3555555 5889999999999999999999999963 347774
No 63
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=25.07 E-value=55 Score=17.36 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=15.8
Q ss_pred hCHHHHHHHHHhhccccCCC
Q 031953 130 RDRTAYDQRVKGNNPSQSYV 149 (150)
Q Consensus 130 ~~~~~f~~~~r~~~~~~~~~ 149 (150)
+|+-.|.++++.+.++++++
T Consensus 11 ~dp~~yi~~i~~~g~~~Gi~ 30 (34)
T PF02375_consen 11 KDPIKYISSIEPEGEKYGIC 30 (34)
T ss_dssp S-HHHHHHHHHHTTGGGSEE
T ss_pred hCHHHHHHHHHHHHHHCCEE
Confidence 48889999999999888753
No 64
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=24.58 E-value=72 Score=27.69 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=21.3
Q ss_pred cHHHHHHHHhCHHHHHHHHHhhcccc
Q 031953 121 NGEAAALMMRDRTAYDQRVKGNNPSQ 146 (150)
Q Consensus 121 n~~a~~~~~~~~~~f~~~~r~~~~~~ 146 (150)
-.++.++..+|+++|.+.|+++.+++
T Consensus 271 ~eea~~l~~~dp~~~~~~v~~Sl~rh 296 (546)
T PF01175_consen 271 FEEANELRAEDPEEFKERVQESLARH 296 (546)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 45677777899999999999987654
No 65
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=24.37 E-value=94 Score=19.99 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=17.7
Q ss_pred HHHHHHHhCHHHHHHHHHhhccc
Q 031953 123 EAAALMMRDRTAYDQRVKGNNPS 145 (150)
Q Consensus 123 ~a~~~~~~~~~~f~~~~r~~~~~ 145 (150)
+-..++++|+++|++..++.++.
T Consensus 8 ~L~~LA~~dPe~fe~lr~~~~ee 30 (83)
T PF11333_consen 8 ELKELAQNDPEAFEQLRQELIEE 30 (83)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHH
Confidence 45668899999999887776553
No 66
>PRK05414 urocanate hydratase; Provisional
Probab=22.42 E-value=82 Score=27.39 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.8
Q ss_pred cHHHHHHHHhCHHHHHHHHHhhcccc
Q 031953 121 NGEAAALMMRDRTAYDQRVKGNNPSQ 146 (150)
Q Consensus 121 n~~a~~~~~~~~~~f~~~~r~~~~~~ 146 (150)
-.++..+.++|++.|.+.|+++.+++
T Consensus 281 ~ee~~~lr~~dp~~~~~~~~~Sm~rh 306 (556)
T PRK05414 281 LEEAAELRAEDPEEFVKAAKASMARH 306 (556)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 46788888999999999999987654
No 67
>PRK11700 hypothetical protein; Provisional
Probab=22.23 E-value=2.7e+02 Score=20.83 Aligned_cols=61 Identities=20% Similarity=0.412 Sum_probs=39.4
Q ss_pred CCCCCC-CCcEEEEEEEeCC--------------CCCCCCCeEEEe--c------cccccceeCCCCceeccccCCCCCC
Q 031953 39 PKESSY-QGGVWKIRVELPD--------------AYPYKSPSIGFV--N------KIYHPNVDELSGSVCLDVINQTWSP 95 (150)
Q Consensus 39 p~~t~y-~gg~f~~~i~fp~--------------~yP~~pP~v~f~--t------~i~HpnV~~~~G~icl~~l~~~W~p 95 (150)
|.+..| .-|+=|+++.+|- +.|..++-|++. + +.-.|-|.-+.|.+|++...
T Consensus 101 P~~k~Yp~eGWEHIElVlp~~~~t~~~~~~all~~~~l~~~gikvK~SsPkge~ERL~NPTlAv~~~~vcIK~HP----- 175 (187)
T PRK11700 101 PGEKRYPHEGWEHIELVLPGDPETLDARALALLSDEGLSLPGIKVKTSSPKGEGERLPNPTLAVTDGGICIKFHP----- 175 (187)
T ss_pred CCCCCCCCCCceEEEEEecCCcchHHHHHHHhccccccccCCcEEEecCCCccCccCCCCcEEEeeCCEEEEEcC-----
Confidence 434444 2467789998873 344455545444 3 35677777678999998763
Q ss_pred cCCHHHHHHH
Q 031953 96 MFDLVNVFEV 105 (150)
Q Consensus 96 ~~~i~~il~~ 105 (150)
++|+.|+.+
T Consensus 176 -~slk~IV~S 184 (187)
T PRK11700 176 -HSIKEIVAS 184 (187)
T ss_pred -ccHHHHHHh
Confidence 678877754
No 68
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=22.10 E-value=84 Score=27.22 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=21.5
Q ss_pred cHHHHHHHHhCHHHHHHHHHhhcccc
Q 031953 121 NGEAAALMMRDRTAYDQRVKGNNPSQ 146 (150)
Q Consensus 121 n~~a~~~~~~~~~~f~~~~r~~~~~~ 146 (150)
-.++.++..+|+++|.+.|+++.+++
T Consensus 272 ~ee~~~lr~~dp~~~~~~~~~Sm~rh 297 (545)
T TIGR01228 272 VEDADKLRQEEPEAYVKAAKQSMAKH 297 (545)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 45677788899999999999987654
No 69
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=21.52 E-value=94 Score=20.87 Aligned_cols=19 Identities=16% Similarity=0.478 Sum_probs=16.0
Q ss_pred eEEEEEeCCCCCCCCCcEEEE
Q 031953 31 EFYVEFNGPKESSYQGGVWKI 51 (150)
Q Consensus 31 ~w~~~i~gp~~t~y~gg~f~~ 51 (150)
+|.|.|-| +.+|+|-.|.|
T Consensus 2 kWkC~iCg--~~I~~gqlFTF 20 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTF 20 (101)
T ss_pred ceEEEecC--CeeeecceEEE
Confidence 69999975 66899999877
No 70
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=21.45 E-value=1.5e+02 Score=17.65 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=18.9
Q ss_pred ccHHHHHHHHhCHHHHHHHHHh
Q 031953 120 LNGEAAALMMRDRTAYDQRVKG 141 (150)
Q Consensus 120 ~n~~a~~~~~~~~~~f~~~~r~ 141 (150)
-|++.+++..+|+++|.+..-.
T Consensus 34 ~nP~l~q~I~~n~e~Fl~ll~~ 55 (59)
T PF09280_consen 34 SNPQLLQLIQQNPEEFLRLLNE 55 (59)
T ss_dssp CSHHHHHHHHHTHHHHHHHHHS
T ss_pred cCHHHHHHHHHCHHHHHHHHcC
Confidence 5899999999999999987644
No 71
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=20.02 E-value=1.5e+02 Score=23.65 Aligned_cols=24 Identities=21% Similarity=0.528 Sum_probs=20.4
Q ss_pred CcEEEEEEEeCCCCC------------------CCCCeEEEe
Q 031953 46 GGVWKIRVELPDAYP------------------YKSPSIGFV 69 (150)
Q Consensus 46 gg~f~~~i~fp~~yP------------------~~pP~v~f~ 69 (150)
.|.|.|.-..|.-|| ..||.|.|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 489999999999997 578888775
Done!