Query 031953
Match_columns 150
No_of_seqs 131 out of 1074
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 12:04:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ayz_A UBC2, ubiquitin-conjuga 100.0 4.3E-51 1.5E-55 298.5 16.7 146 1-148 1-150 (169)
2 4gpr_A Ubiquitin-conjugating e 100.0 4.8E-51 1.6E-55 293.5 16.5 143 4-148 5-150 (151)
3 2aak_A UBC1, ubiquitin conjuga 100.0 8.9E-51 3.1E-55 292.4 17.5 146 1-148 1-150 (152)
4 2c2v_B Ubiquitin-conjugating e 100.0 2.7E-51 9.3E-56 295.6 14.8 148 1-150 2-153 (154)
5 2bep_A Ubiquitin-conjugating e 100.0 1.1E-50 3.8E-55 293.8 16.7 147 1-148 5-158 (159)
6 1zdn_A Ubiquitin-conjugating e 100.0 7.7E-51 2.6E-55 294.4 15.2 142 4-147 14-158 (158)
7 2ayv_A Ubiquitin-conjugating e 100.0 2.7E-50 9.2E-55 293.5 17.5 142 4-147 22-166 (166)
8 3k9o_A Ubiquitin-conjugating e 100.0 1.6E-50 5.3E-55 303.0 16.4 149 1-150 2-157 (201)
9 1z2u_A Ubiquitin-conjugating e 100.0 3.5E-50 1.2E-54 288.7 17.1 143 4-148 5-150 (150)
10 2r0j_A Ubiquitin carrier prote 100.0 2.3E-50 7.8E-55 289.4 15.4 143 4-148 2-147 (149)
11 1fxt_A Ubiquitin-conjugating e 100.0 1E-50 3.5E-55 291.2 13.5 144 4-148 2-149 (149)
12 2c4o_A Ubiquitin-conjugating e 100.0 6.6E-50 2.2E-54 291.2 17.7 143 4-148 20-165 (165)
13 2ucz_A UBC7, ubiquitin conjuga 100.0 3.5E-50 1.2E-54 292.8 16.0 145 1-147 1-163 (165)
14 1jat_A Ubiquitin-conjugating e 100.0 2.1E-50 7.3E-55 291.2 14.1 145 2-148 4-151 (155)
15 2e2c_A Ubiquitin conjugating e 100.0 5.5E-50 1.9E-54 289.3 16.1 142 4-148 10-154 (156)
16 2onu_A Ubiquitin-conjugating e 100.0 3.1E-51 1.1E-55 294.7 9.5 147 2-148 1-147 (152)
17 2gjd_A Ubiquitin-conjugating e 100.0 1.1E-49 3.9E-54 288.0 16.9 146 1-148 1-157 (157)
18 1yh2_A HSPC150 protein similar 100.0 1.3E-49 4.5E-54 290.7 16.6 144 3-148 4-154 (169)
19 3bzh_A Ubiquitin-conjugating e 100.0 1.2E-49 4E-54 296.4 15.8 144 3-148 48-194 (194)
20 2pwq_A Ubiquitin conjugating e 100.0 8.6E-50 2.9E-54 301.2 15.1 145 4-149 24-171 (216)
21 3rcz_B SUMO-conjugating enzyme 100.0 2.7E-49 9.2E-54 287.4 17.2 142 4-147 11-162 (163)
22 3h8k_A Ubiquitin-conjugating e 100.0 2.1E-49 7.2E-54 288.4 16.5 143 3-147 3-162 (164)
23 2f4z_A Tgtwinscan_2721 - E2 do 100.0 2.5E-49 8.4E-54 294.3 16.6 144 4-148 33-192 (193)
24 3e46_A Ubiquitin-conjugating e 100.0 3.4E-49 1.2E-53 303.9 16.3 149 1-150 54-209 (253)
25 1i7k_A Ubiquitin-conjugating e 100.0 5.4E-49 1.8E-53 289.5 16.1 141 4-147 31-174 (179)
26 2grr_A Ubiquitin-conjugating e 100.0 6.7E-49 2.3E-53 285.0 16.3 146 1-148 4-160 (161)
27 1yrv_A Ubiquitin-conjugating l 100.0 5.6E-49 1.9E-53 287.2 15.2 143 1-145 20-168 (169)
28 2z5d_A Ubiquitin-conjugating e 100.0 9.6E-50 3.3E-54 293.3 10.8 144 4-148 26-169 (179)
29 1y8x_A Ubiquitin-conjugating e 100.0 3.8E-48 1.3E-52 280.7 16.5 143 1-146 4-148 (160)
30 1wzv_A Ubiquitin-conjugating e 100.0 2.9E-48 1E-52 280.0 15.3 142 4-148 5-151 (155)
31 1tte_A Ubiquitin-conjugating e 100.0 6E-49 2.1E-53 296.4 11.9 147 2-149 1-151 (215)
32 3fn1_B NEDD8-conjugating enzym 100.0 7.2E-48 2.5E-52 281.1 16.0 144 2-148 13-167 (167)
33 2y9m_A Ubiquitin-conjugating e 100.0 9E-48 3.1E-52 281.7 15.4 147 1-148 3-168 (172)
34 3rz3_A Ubiquitin-conjugating e 100.0 1.1E-47 3.9E-52 283.7 15.3 144 1-146 3-171 (183)
35 1yf9_A Ubiquitin carrier prote 100.0 2.9E-48 9.9E-53 283.9 11.7 144 4-148 13-156 (171)
36 2nvu_C NEDD8-conjugating enzym 100.0 2.7E-47 9.2E-52 280.8 16.3 141 3-146 26-168 (180)
37 2awf_A Ubiquitin-conjugating e 100.0 3E-47 1E-51 278.9 14.1 137 4-142 18-172 (172)
38 3o2u_A NEDD8-conjugating enzym 100.0 1.8E-46 6.3E-51 278.5 16.3 143 2-147 28-178 (190)
39 1c4z_D UBCH7, ubiquitin conjug 100.0 4.6E-47 1.6E-51 273.5 11.9 142 4-148 3-149 (154)
40 4ds2_A Ubiquitin-conjugating e 100.0 8.2E-46 2.8E-50 270.2 13.7 140 1-141 5-164 (167)
41 4ddg_A Ubiquitin-conjugating e 100.0 1.6E-45 5.6E-50 300.1 16.3 146 2-149 2-150 (399)
42 2fo3_A Ubiquitin-conjugating e 100.0 1.3E-41 4.4E-46 237.3 12.7 116 1-118 4-123 (125)
43 3ceg_A Baculoviral IAP repeat- 100.0 1.9E-41 6.5E-46 267.7 13.3 144 4-149 77-244 (323)
44 2q0v_A Ubiquitin-conjugating e 100.0 1.3E-41 4.5E-46 245.3 9.9 126 3-131 21-156 (156)
45 1jat_B Ubiquitin-conjugating e 100.0 4.8E-42 1.6E-46 243.2 6.5 126 1-128 2-138 (138)
46 2h2y_A Ubiquitin-conjugating e 100.0 2.5E-40 8.4E-45 233.8 14.3 114 1-116 18-135 (136)
47 2a4d_A Ubiquitin-conjugating e 100.0 1.7E-40 5.7E-45 240.2 11.2 121 4-125 26-156 (160)
48 2a7l_A Hypothetical ubiquitin- 100.0 1.4E-39 4.7E-44 229.8 11.9 110 1-112 20-136 (136)
49 2hlw_A Ubiquitin-conjugating e 100.0 1.1E-39 3.8E-44 238.1 8.8 121 4-125 36-166 (170)
50 2f4w_A Ubiquitin-conjugating e 100.0 7.7E-37 2.6E-41 226.2 14.5 133 4-140 15-156 (187)
51 1zuo_A Hypothetical protein LO 100.0 1.2E-38 4.3E-43 235.6 1.9 134 1-144 24-178 (186)
52 2z6o_A UFM1-conjugating enzyme 99.9 4.1E-28 1.4E-32 173.9 0.1 112 5-129 34-160 (172)
53 3r3q_A Suppressor protein STP2 99.8 5.5E-20 1.9E-24 132.5 9.2 95 21-118 52-161 (162)
54 3kpa_A Probable ubiquitin fold 99.7 1.5E-18 5.3E-23 121.8 -0.9 95 5-103 36-145 (168)
55 3obq_A Tumor susceptibility ge 99.5 3.1E-14 1.1E-18 100.8 7.4 78 27-112 51-137 (146)
56 2ebm_A RWD domain-containing p 96.3 0.013 4.4E-07 39.5 6.8 68 1-70 8-78 (128)
57 2day_A Ring finger protein 25; 93.8 0.23 7.9E-06 33.2 6.7 65 6-70 11-82 (128)
58 2yz0_A Serine/threonine-protei 93.7 0.25 8.6E-06 33.5 6.8 41 29-70 45-85 (138)
59 2ebk_A RWD domain-containing p 92.6 0.26 8.8E-06 33.0 5.5 41 29-70 39-79 (128)
60 2daw_A RWD domain containing p 90.9 0.45 1.5E-05 33.1 5.3 23 48-70 76-98 (154)
61 1ukx_A GCN2, GCN2 EIF2alpha ki 90.3 0.15 5E-06 34.6 2.3 23 47-69 63-85 (137)
62 2dax_A Protein C21ORF6; RWD do 89.6 0.29 1E-05 33.9 3.4 25 47-71 73-97 (152)
63 3zqs_A E3 ubiquitin-protein li 88.8 1.2 4.2E-05 32.1 6.3 82 7-111 5-86 (186)
64 2cwb_A Chimera of immunoglobul 83.1 0.24 8E-06 32.8 0.0 36 111-146 18-53 (108)
65 3rls_A YAF9, protein AF-9 homo 43.8 74 0.0025 22.5 6.2 45 27-73 30-74 (175)
66 2bum_A Protocatechuate 3,4-dio 30.4 47 0.0016 24.1 3.5 25 45-69 109-138 (209)
67 3qrl_A Transcription initiatio 25.8 1.6E+02 0.0054 20.0 6.0 44 28-73 31-77 (140)
68 2f4m_B UV excision repair prot 21.8 92 0.0032 17.9 3.0 20 120-139 37-56 (61)
69 2jrw_A Cyclic extended PEP.1; 20.9 24 0.00081 16.4 0.2 13 63-75 7-19 (26)
70 2fkn_A Urocanate hydratase; ro 20.5 63 0.0022 26.9 2.8 26 121-146 277-302 (552)
71 1pve_A HHR23B, UV excision rep 20.4 93 0.0032 18.6 2.9 22 120-141 39-60 (72)
72 1x87_A Urocanase protein; stru 20.2 64 0.0022 26.8 2.8 26 121-146 276-301 (551)
73 1uwk_A Urocanate hydratase; hy 20.0 65 0.0022 26.8 2.8 26 121-146 281-306 (557)
No 1
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=4.3e-51 Score=298.46 Aligned_cols=146 Identities=27% Similarity=0.596 Sum_probs=139.2
Q ss_pred CCC-hHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccc
Q 031953 1 MSS-PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 76 (150)
||+ +.+||++|+++ .+++|+++.+.++|+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPN 80 (169)
T 1ayz_A 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN 80 (169)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCC
Confidence 886 78999999875 47889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 77 VDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
|+. +|.||+++|++.|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|+++++.
T Consensus 81 I~~-~G~ICl~iL~~~WsP~~~i~~vL~s-i~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 81 VYA-NGEICLDILQNRWTPTYDVASILTS-IQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp BCT-TSBBCCGGGTTTCCTTCCHHHHHHH-HHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCeEeehhhccCCCCcCcHHHHHHH-HHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 995 9999999999999999999999999 999999999999999999999999999999999999998863
No 2
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=4.8e-51 Score=293.47 Aligned_cols=143 Identities=29% Similarity=0.654 Sum_probs=138.6
Q ss_pred hHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 4 PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 4 ~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
|.+||++|+++ .++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 5 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~- 83 (151)
T 4gpr_A 5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK- 83 (151)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECC-
Confidence 78999999875 47889999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+|.||+++|.++|+|++++++||.+ |+++|.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~ 150 (151)
T 4gpr_A 84 NGVICLDILKDQWSPALTLSRVLLS-ISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYAR 150 (151)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEcccccCCCCCCCcHHHHHHH-HHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999 999999999999999999999999999999999999999986
No 3
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=8.9e-51 Score=292.36 Aligned_cols=146 Identities=28% Similarity=0.621 Sum_probs=140.4
Q ss_pred CCC-hHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccc
Q 031953 1 MSS-PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 76 (150)
||+ +.+||++|+++ .+++|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++||||
T Consensus 1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (152)
T 2aak_A 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN 80 (152)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCC
Confidence 886 78999999885 47789999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 77 VDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
|+. +|.||+++|.++|+|++++.+||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|++++|.
T Consensus 81 v~~-~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 150 (152)
T 2aak_A 81 IYA-DGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150 (152)
T ss_dssp BCT-TSBBCCGGGTTSCCTTCCHHHHHHH-HHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCC-CCEEechhhcCCCCCCCcHHHHHHH-HHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 995 9999999999999999999999999 999999999999999999999999999999999999999874
No 4
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-51 Score=295.61 Aligned_cols=148 Identities=29% Similarity=0.544 Sum_probs=138.6
Q ss_pred CCC-hHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccc
Q 031953 1 MSS-PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 76 (150)
||. +.+||++|+++ .+++|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN 81 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence 454 67999999875 47899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCCCC
Q 031953 77 VDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSYVP 150 (150)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~~ 150 (150)
|+ .+|.||+++|+++|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||.-|
T Consensus 82 v~-~~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~~ 153 (154)
T 2c2v_B 82 VD-KLGRICLDILKDKWSPALQIRTVLLS-IQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNN 153 (154)
T ss_dssp BC-TTCBBCCHHHHTSCCTTCCHHHHHHH-HHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred Cc-cCCeEEchhccCCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCC
Confidence 99 48999999999999999999999999 99999999999999999999999999999999999999999743
No 5
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=1.1e-50 Score=293.81 Aligned_cols=147 Identities=24% Similarity=0.611 Sum_probs=140.1
Q ss_pred CCC-hHHHHHHHHHhc------CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccc
Q 031953 1 MSS-PSKRREMDLMKL------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~~------~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 73 (150)
||+ +.+||++|++++ ++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 664 789999998854 3679999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 74 HPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 74 HpnV~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
||||+..+|.||+++|.++|+|++++.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 158 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 158 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 99999658999999999999999999999999 999999999999999999999999999999999999999984
No 6
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.7e-51 Score=294.38 Aligned_cols=142 Identities=25% Similarity=0.509 Sum_probs=137.1
Q ss_pred hHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 4 PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 4 ~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
+.+||++|+++ .+++|+++.+.++|+++|+++|.||+||+|+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 14 ~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~- 92 (158)
T 1zdn_A 14 IIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGA- 92 (158)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCC-
Confidence 67999999885 47899999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccC
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQS 147 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 147 (150)
+|.||+++|.++|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|+++||
T Consensus 93 ~G~iCl~iL~~~W~p~~~i~~vL~~-i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 93 NGEICVNVLKRDWTAELGIRHVLLT-IKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp TSBBCHHHHTTTCCTTCCHHHHHHH-HHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCEEehhhcCCCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999 99999999999999999999999999999999999999986
No 7
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-50 Score=293.48 Aligned_cols=142 Identities=34% Similarity=0.674 Sum_probs=137.3
Q ss_pred hHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 4 PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 4 ~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
+.+||++|+++ .+++|+++.+.++|+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+||||||+ .
T Consensus 22 ~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~-~ 100 (166)
T 2ayv_A 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN-S 100 (166)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC-C
Confidence 68999999885 4788999999999999999999999999999999999999999999999999999999999999 4
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccC
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQS 147 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 147 (150)
+|.||+++|.++|+|+++|++||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|+++||
T Consensus 101 ~G~ICL~iL~~~WsP~~ti~~vL~s-I~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 101 QGAICLDILKDQWSPALTISKVLLS-ISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCeEEcccccccCCCCCcHHHHHHH-HHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999 99999999999999999999999999999999999999986
No 8
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=1.6e-50 Score=302.99 Aligned_cols=149 Identities=25% Similarity=0.620 Sum_probs=140.3
Q ss_pred CCC-hHHHHHHHHHhc------CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccc
Q 031953 1 MSS-PSKRREMDLMKL------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~~------~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 73 (150)
||+ |.+||++|++++ ++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 81 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence 776 899999999865 2579999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCCCC
Q 031953 74 HPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSYVP 150 (150)
Q Consensus 74 HpnV~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~~ 150 (150)
||||+..+|.||+++|.++|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||.-|
T Consensus 82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~-i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~ 157 (201)
T 3k9o_A 82 HPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAP 157 (201)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCcCCCCeeeCcccccCCCCCCCHHHHHHH-HHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcccc
Confidence 99999558999999999999999999999999 99999999999999999999999999999999999999998653
No 9
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=3.5e-50 Score=288.69 Aligned_cols=143 Identities=33% Similarity=0.652 Sum_probs=138.0
Q ss_pred hHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 4 PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 4 ~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
+.+||++|+++ .+++|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 5 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~- 83 (150)
T 1z2u_A 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 83 (150)
T ss_dssp HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCC-
Confidence 78999999885 47889999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+|.||+++|.++|+|++++.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 84 ~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 84 NGSICLDILRSQWSPALTISKVLLS-ICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCeEeeccccCCCCCCCCHHHHHHH-HHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999 999999999999999999999999999999999999999985
No 10
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=2.3e-50 Score=289.39 Aligned_cols=143 Identities=28% Similarity=0.606 Sum_probs=137.4
Q ss_pred hHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 4 PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 4 ~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
+.+||++|+++ .+++|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~- 80 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDK- 80 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCC-
Confidence 35899999875 47889999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+|.||+++|+++|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|++++|.
T Consensus 81 ~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 147 (149)
T 2r0j_A 81 LGRICLDILKDKWSPALQIRTVLLS-IQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYAN 147 (149)
T ss_dssp TCBBCCGGGTTTCCTTSCHHHHHHH-HHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CCEEechhcCCCCCCCCcHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 8999999999999999999999999 999999999999999999999999999999999999999986
No 11
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1e-50 Score=291.21 Aligned_cols=144 Identities=28% Similarity=0.642 Sum_probs=137.6
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCC-CceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeC
Q 031953 4 PSKRREMDLMKL---MMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (150)
Q Consensus 4 ~~~Rl~~e~~~~---~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~ 79 (150)
+.+||++|++++ +++|+++.+.++ |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 469999998754 778999999987 9999999999999999999999999999999999999999999999999995
Q ss_pred CCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 80 LSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
.+|.||+++|.++|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALIS-LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHH-HHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 59999999999999999999999999 999999999999999999999999999999999999999984
No 12
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=6.6e-50 Score=291.23 Aligned_cols=143 Identities=33% Similarity=0.667 Sum_probs=138.0
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 4 ~~~Rl~~e~~~~---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
+.+||++|++++ +++|+++.+.++|++.|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 20 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~- 98 (165)
T 2c4o_A 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS- 98 (165)
T ss_dssp HHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCC-
Confidence 689999998854 7789999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+|.||+++|+++|+|+++|++||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 99 ~G~ICl~iL~~~W~P~~ti~~vL~s-i~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 99 NGSICLDILRSQWSPALTISKVLLS-ICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred CCeEeehhhcCCCCCcCcHHHHHHH-HHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999 999999999999999999999999999999999999999985
No 13
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3.5e-50 Score=292.78 Aligned_cols=145 Identities=24% Similarity=0.457 Sum_probs=136.8
Q ss_pred CCC-hHHHHHHHHHh---cCCCCcEEEecC-CCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccccc
Q 031953 1 MSS-PSKRREMDLMK---LMMSDYKVEMIN-DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~---~~~~~~~v~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hp 75 (150)
||+ +.+||++|+++ .+++|+++.+.+ +|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||
T Consensus 1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 80 (165)
T 2ucz_A 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP 80 (165)
T ss_dssp -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence 886 78999999875 478899999976 6999999999999999999999999999999999999999999999999
Q ss_pred ceeCCCCceecccc-------------CCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhh
Q 031953 76 NVDELSGSVCLDVI-------------NQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGN 142 (150)
Q Consensus 76 nV~~~~G~icl~~l-------------~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~ 142 (150)
||+. +|.||+++| .++|+|+++|++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|
T Consensus 81 Nv~~-~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~s-i~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~ 158 (165)
T 2ucz_A 81 NIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS-VMSMLSEPNIESGANIDACILWRDNRPEFERQVKLS 158 (165)
T ss_dssp TBCT-TSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHH-HHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCC-CCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHH
Confidence 9995 899999999 6899999999999999 999999999999999999999999999999999999
Q ss_pred ccccC
Q 031953 143 NPSQS 147 (150)
Q Consensus 143 ~~~~~ 147 (150)
+++++
T Consensus 159 ~~~~~ 163 (165)
T 2ucz_A 159 ILKSL 163 (165)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99864
No 14
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=2.1e-50 Score=291.25 Aligned_cols=145 Identities=31% Similarity=0.613 Sum_probs=139.1
Q ss_pred CChHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccccccee
Q 031953 2 SSPSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (150)
Q Consensus 2 s~~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~ 78 (150)
+++.+||++|+++ .+++|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (155)
T 1jat_A 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83 (155)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence 4477999999875 4788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 79 ELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
.+|.||+++|+++|+|++++.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 84 -~~G~iCl~iL~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~ 151 (155)
T 1jat_A 84 -RLGRICLDVLKTNWSPALQIRTVLLS-IQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 151 (155)
T ss_dssp -TTCCBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSE
T ss_pred -CCCEEEchhhccCCCCCCCHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 69999999999999999999999999 999999999999999999999999999999999999999985
No 15
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=5.5e-50 Score=289.34 Aligned_cols=142 Identities=30% Similarity=0.605 Sum_probs=136.5
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 4 ~~~Rl~~e~~~~---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
+.+||++|++++ +++|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 10 ~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~- 88 (156)
T 2e2c_A 10 VSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ- 88 (156)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCcc-
Confidence 789999998854 7889999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+|.||+++|.++|+|++++.+||.+ |++||.+|++++|+|.+||++| +|+++|+++||+|++++++
T Consensus 89 ~G~iCl~iL~~~W~p~~~i~~vL~s-i~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 89 SGNICLDILKENWTASYDVRTILLS-LQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred CceEECccccccCCCCCcHHHHHHH-HHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999 9999999999999999999999 8999999999999999864
No 16
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=3.1e-51 Score=294.67 Aligned_cols=147 Identities=56% Similarity=1.061 Sum_probs=139.3
Q ss_pred CChHHHHHHHHHhcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCCC
Q 031953 2 SSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELS 81 (150)
Q Consensus 2 s~~~~Rl~~e~~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~~ 81 (150)
+++.+||++|++++...|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+..+
T Consensus 1 ~sa~~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~ 80 (152)
T 2onu_A 1 GTSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEAS 80 (152)
T ss_dssp --CCCHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTT
T ss_pred ChHHHHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcC
Confidence 45679999999988778999999999999999999999999999999999999999999999999999999999999658
Q ss_pred CceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 82 GSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 82 G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
|.||+++|.++|+|++++++||.++|++||.+|++++|+|.+||++|++|+++|+++||+|++++|.
T Consensus 81 G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~ 147 (152)
T 2onu_A 81 GSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYAS 147 (152)
T ss_dssp CBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999985689999999999999999999999999999999999999986
No 17
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=1.1e-49 Score=287.98 Aligned_cols=146 Identities=30% Similarity=0.525 Sum_probs=136.7
Q ss_pred CCC-hHHHHHHHHHh---cCCCCcEEEecC-----CCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecc
Q 031953 1 MSS-PSKRREMDLMK---LMMSDYKVEMIN-----DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~---~~~~~~~v~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 71 (150)
||+ +.+||++|+++ .+++|+++.+.+ +|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+
T Consensus 1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 80 (157)
T 2gjd_A 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG 80 (157)
T ss_dssp --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence 886 88999999874 478899998875 389999999999999999999999999999999999999999999
Q ss_pred ccccceeCCCCceeccccCC--CCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 72 IYHPNVDELSGSVCLDVINQ--TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 72 i~HpnV~~~~G~icl~~l~~--~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+|||||+ .+|.||+++|.. +|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 81 i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 81 FYHPNVY-PSGTICLSILNEDQDWRPAITLKQIVLG-VQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp CCCTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHH-HHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred CccCCCC-CCCcEeeecccCCCCCCCCCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999 599999999987 79999999999999 999999999999999999999999999999999999999984
No 18
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-49 Score=290.72 Aligned_cols=144 Identities=26% Similarity=0.563 Sum_probs=138.6
Q ss_pred ChHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeC
Q 031953 3 SPSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (150)
Q Consensus 3 ~~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~ 79 (150)
++.+||++|+++ .+++|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~- 82 (169)
T 1yh2_A 4 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNID- 82 (169)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC-
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCC-
Confidence 478999999885 4788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccccC----CCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 80 LSGSVCLDVIN----QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 80 ~~G~icl~~l~----~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
.+|.||+++|+ ++|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|++++|+
T Consensus 83 ~~G~iCl~iL~~~~~~~W~p~~~i~~vL~s-i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 154 (169)
T 1yh2_A 83 SAGRICLDVLKLPPKGAWRPSLNIATVLTS-IQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHAR 154 (169)
T ss_dssp TTCBBCCGGGSCTTTSCCCTTSCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred cCCeEecccccCCcccCCCCCCcHHHHHHH-HHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 59999999998 899999999999999 999999999999999999999999999999999999999986
No 19
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.2e-49 Score=296.38 Aligned_cols=144 Identities=28% Similarity=0.547 Sum_probs=138.3
Q ss_pred ChHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeC
Q 031953 3 SPSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (150)
Q Consensus 3 ~~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~ 79 (150)
.+.+||++|+++ .+++|+++.+.++|+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 48 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~ 127 (194)
T 3bzh_A 48 TSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS 127 (194)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceECC
Confidence 367999999885 47889999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 80 LSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 80 ~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+|.||+++|.++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|+++||+
T Consensus 128 -~G~ICL~iL~~~WsP~~ti~~vL~s-I~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 128 -QGVICLDILKDNWSPALTISKVLLS-ICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp -TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred -CCceechhhhccCCCcCcHHHHHHH-HHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999 999999999999999999999999999999999999999984
No 20
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=8.6e-50 Score=301.23 Aligned_cols=145 Identities=26% Similarity=0.560 Sum_probs=139.4
Q ss_pred hHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 4 PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 4 ~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
+.+||++|+++ .+++|+++.+.++|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+..
T Consensus 24 a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~ 103 (216)
T 2pwq_A 24 ELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQ 103 (216)
T ss_dssp HHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCC
Confidence 78999999875 477899999999999999999999999999999999999999999999999999999999999955
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCCC
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSYV 149 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 149 (150)
+|.||+++|+++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||.-
T Consensus 104 ~G~ICL~iL~~~WsP~~ti~~VL~s-I~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~ 171 (216)
T 2pwq_A 104 TGAICLDVLKNEWSPALTIRTALLS-IQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG 171 (216)
T ss_dssp TCBBCCHHHHHHCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEchhhcccCCCCCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999 9999999999999999999999999999999999999999874
No 21
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-49 Score=287.44 Aligned_cols=142 Identities=25% Similarity=0.543 Sum_probs=136.0
Q ss_pred hHHHHHHHHHh---cCCCCcEEEecCC-----CceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccccc
Q 031953 4 PSKRREMDLMK---LMMSDYKVEMIND-----GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (150)
Q Consensus 4 ~~~Rl~~e~~~---~~~~~~~v~~~~~-----~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hp 75 (150)
|.+||++|+++ .+++|+++.+.++ |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||||
T Consensus 11 ~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HP 90 (163)
T 3rcz_B 11 CKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHP 90 (163)
T ss_dssp HHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccC
Confidence 78999999874 4889999999876 899999999999999999999999999999999999999999999999
Q ss_pred ceeCCCCceeccccCC--CCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccC
Q 031953 76 NVDELSGSVCLDVINQ--TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQS 147 (150)
Q Consensus 76 nV~~~~G~icl~~l~~--~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 147 (150)
||+ .+|.||+++|.. +|+|+++|++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 91 nV~-~~G~iCl~iL~~~~~W~p~~ti~~vL~~-i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya 162 (163)
T 3rcz_B 91 NVY-PSGTVCLSILNEEEGWKPAITIKQILLG-IQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENA 162 (163)
T ss_dssp TBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHH-HHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTC
T ss_pred CCC-CCCcEeccccCCCCCcCCcCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999 599999999976 49999999999999 99999999999999999999999999999999999999997
No 22
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=2.1e-49 Score=288.42 Aligned_cols=143 Identities=21% Similarity=0.414 Sum_probs=136.0
Q ss_pred ChHHHHHHHHHh---cCCCCcEEEecCC-CceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccccccee
Q 031953 3 SPSKRREMDLMK---LMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (150)
Q Consensus 3 ~~~~Rl~~e~~~---~~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~ 78 (150)
+|.+||++|+++ .+++|+++.+.++ |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 ~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~ 82 (164)
T 3h8k_A 3 TALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIY 82 (164)
T ss_dssp HHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCC
Confidence 478999999875 4788999998876 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeccccC-------------CCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccc
Q 031953 79 ELSGSVCLDVIN-------------QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPS 145 (150)
Q Consensus 79 ~~~G~icl~~l~-------------~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~ 145 (150)
.+|.||+++|. ++|+|+++|++||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|+++
T Consensus 83 -~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~-i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~ 160 (164)
T 3h8k_A 83 -PDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS-VVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 160 (164)
T ss_dssp -TTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHH-HHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred -CCCcEeeecccCcccccccccccccCCCCCCcHHHHHHH-HHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 59999999997 789999999999999 999999999999999999999999999999999999998
Q ss_pred cC
Q 031953 146 QS 147 (150)
Q Consensus 146 ~~ 147 (150)
.+
T Consensus 161 s~ 162 (164)
T 3h8k_A 161 SL 162 (164)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 23
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=2.5e-49 Score=294.31 Aligned_cols=144 Identities=25% Similarity=0.579 Sum_probs=135.8
Q ss_pred hHHHHHHHHHhc---CC-------------CCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEE
Q 031953 4 PSKRREMDLMKL---MM-------------SDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIG 67 (150)
Q Consensus 4 ~~~Rl~~e~~~~---~~-------------~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~ 67 (150)
+.+||++|++++ ++ .|+++.+.++|+++|+++|.||++|+|+||+|+++|.||++||++||+|+
T Consensus 33 a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~ 112 (193)
T 2f4z_A 33 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK 112 (193)
T ss_dssp HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred HHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEE
Confidence 678999998854 43 79999999999999999999999999999999999999999999999999
Q ss_pred EeccccccceeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccC
Q 031953 68 FVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQS 147 (150)
Q Consensus 68 f~t~i~HpnV~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 147 (150)
|.|+||||||+..+|.||+++|.++|+|+++|++||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|+++||
T Consensus 113 F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~s-I~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~~ya 191 (193)
T 2f4z_A 113 FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLS-IQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTETFA 191 (193)
T ss_dssp ESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred EecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHc
Confidence 99999999999558999999999999999999999999 99999999999999999999999999999999999999998
Q ss_pred C
Q 031953 148 Y 148 (150)
Q Consensus 148 ~ 148 (150)
.
T Consensus 192 ~ 192 (193)
T 2f4z_A 192 K 192 (193)
T ss_dssp C
T ss_pred c
Confidence 4
No 24
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=3.4e-49 Score=303.88 Aligned_cols=149 Identities=25% Similarity=0.620 Sum_probs=141.3
Q ss_pred CCC-hHHHHHHHHHhc------CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccc
Q 031953 1 MSS-PSKRREMDLMKL------MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~~------~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 73 (150)
||+ +.+||++|++++ ++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 133 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence 554 789999998865 3679999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCCCC
Q 031953 74 HPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSYVP 150 (150)
Q Consensus 74 HpnV~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~~ 150 (150)
||||+..+|.||+++|.++|+|+++|++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||.-|
T Consensus 134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~s-I~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~ 209 (253)
T 3e46_A 134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLS-LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAP 209 (253)
T ss_dssp BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCS
T ss_pred cCCccCCCCeeecccccCCCCCCCCHHHHHHH-HHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcccc
Confidence 99999658999999999999999999999999 99999999999999999999999999999999999999998653
No 25
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.4e-49 Score=289.49 Aligned_cols=141 Identities=29% Similarity=0.564 Sum_probs=135.9
Q ss_pred hHHHHHHHHHhc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 4 PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 4 ~~~Rl~~e~~~~---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
+.+||++|++++ +++|+++.+.++|++.|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 31 ~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~- 109 (179)
T 1i7k_A 31 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT- 109 (179)
T ss_dssp HHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCcccc-
Confidence 789999998854 7889999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccC
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQS 147 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 147 (150)
+|.||+++|.++|+|+++|++||.+ |++||.+|++++|+|.+||++| +|+++|.++||+++++.+
T Consensus 110 ~G~ICL~iL~~~WsP~~ti~~vL~s-I~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~ 174 (179)
T 1i7k_A 110 QGNISLDILKEKWSALYDVRTILLS-IQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQV 174 (179)
T ss_dssp TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTC
T ss_pred CCeEEcccCcCcCCCCCCHHHHHHH-HHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 9999999999999999999999 999999999999999875
No 26
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=6.7e-49 Score=284.99 Aligned_cols=146 Identities=25% Similarity=0.480 Sum_probs=137.7
Q ss_pred CCC-hHHHHHHHHHh---cCCCCcEEEecC-----CCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecc
Q 031953 1 MSS-PSKRREMDLMK---LMMSDYKVEMIN-----DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~---~~~~~~~v~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 71 (150)
||+ +.+||++|+++ .+++|+.+.+.+ +|+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 775 78999999875 478899998864 589999999999999999999999999999999999999999999
Q ss_pred ccccceeCCCCceeccccCC--CCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 72 IYHPNVDELSGSVCLDVINQ--TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 72 i~HpnV~~~~G~icl~~l~~--~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+|||||+ .+|.||+++|.+ +|+|++++.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|++++|.
T Consensus 84 i~HPnv~-~~G~iCl~iL~~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 160 (161)
T 2grr_A 84 LFHPNVY-PSGTVCLSILEEDKDWRPAITIKQILLG-IQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160 (161)
T ss_dssp CCSTTBC-TTSBBCCGGGCTTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred cccCCCC-CCCeEeehhcCCCCCcCCCCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 9999999 599999999986 89999999999999 999999999999999999999999999999999999999984
No 27
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=5.6e-49 Score=287.19 Aligned_cols=143 Identities=25% Similarity=0.493 Sum_probs=135.0
Q ss_pred CCC-hHHHHHHHHHhc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccc
Q 031953 1 MSS-PSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~~---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 76 (150)
|++ +.+||++|++++ +++|+++.+.++|+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+|||||
T Consensus 20 M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 99 (169)
T 1yrv_A 20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN 99 (169)
T ss_dssp GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccCc
Confidence 666 789999998854 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceeccccC--CCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccc
Q 031953 77 VDELSGSVCLDVIN--QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPS 145 (150)
Q Consensus 77 V~~~~G~icl~~l~--~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~ 145 (150)
|+..+|.||+++|. ++|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|+++ |++|++
T Consensus 100 I~~~~G~ICL~iL~~~~~WsP~~ti~~vL~s-I~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 100 VDPHTGQPCIDFLDNPEKWNTNYTLSSILLA-LQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp BCTTTCCBCCHHHHCGGGCCTTCCHHHHHHH-HHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred ccCCCCeEeehhhcCCcCCCCcCCHHHHHHH-HHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 94369999999998 899999999999999 99999999999999999999999999999999 998875
No 28
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.6e-50 Score=293.26 Aligned_cols=144 Identities=55% Similarity=1.059 Sum_probs=137.8
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCCCCc
Q 031953 4 PSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGS 83 (150)
Q Consensus 4 ~~~Rl~~e~~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~~G~ 83 (150)
+.+||++|++++..+|+++.+. +|+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+||||||+..+|.
T Consensus 26 a~~RL~kEl~~l~~~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ 104 (179)
T 2z5d_A 26 GKRRMDTDVIKLIESKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGT 104 (179)
T ss_dssp HHHHHHHHHHHHHHSSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHhcCcCCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCe
Confidence 6899999999887789999987 578999999999999999999999999999999999999999999999999955999
Q ss_pred eeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 84 VCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 84 icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
||+++|.++|+|++++++||.++|++||.+|++++|+|.+||++|++|+++|+++||+|++++|.
T Consensus 105 ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 105 VCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp BCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred EeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999887999999999999999999999999999999999999999985
No 29
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=3.8e-48 Score=280.74 Aligned_cols=143 Identities=28% Similarity=0.571 Sum_probs=135.6
Q ss_pred CCChHHHHHHHHHhc-CCCCcEEE-ecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccccccee
Q 031953 1 MSSPSKRREMDLMKL-MMSDYKVE-MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (150)
Q Consensus 1 Ms~~~~Rl~~e~~~~-~~~~~~v~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~ 78 (150)
|+.+.+||++|++++ +++|+++. +.++|+++|+++| ||++|+|+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (160)
T 1y8x_A 4 ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 82 (160)
T ss_dssp CCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred ccHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCC
Confidence 456889999999986 56789998 6788999999988 99999999999999999999999999999999999999999
Q ss_pred CCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhcccc
Q 031953 79 ELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQ 146 (150)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~ 146 (150)
. +|.||+++|.++|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|+++||++++..
T Consensus 83 ~-~G~iCl~iL~~~W~p~~~i~~vL~~-i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~~ 148 (160)
T 1y8x_A 83 L-EGNVCLNILREDWKPVLTINSIIYG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 148 (160)
T ss_dssp T-TCBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSE
T ss_pred C-CCeEEcccchhhccCCCCHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence 5 8999999999999999999999999 9999999999999999999999999999999999998864
No 30
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=2.9e-48 Score=280.05 Aligned_cols=142 Identities=27% Similarity=0.491 Sum_probs=135.8
Q ss_pred hHHHHHHHHHh---cCCCCcEE-EecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeC
Q 031953 4 PSKRREMDLMK---LMMSDYKV-EMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (150)
Q Consensus 4 ~~~Rl~~e~~~---~~~~~~~v-~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~ 79 (150)
+.+||++|+++ .+++|+++ .+.++|+++|+++|. |++|+|+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~ 83 (155)
T 1wzv_A 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE 83 (155)
T ss_dssp CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCC
Confidence 67999999875 47789999 788889999999999 99999999999999999999999999999999999999995
Q ss_pred CCCceecccc-CCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 80 LSGSVCLDVI-NQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 80 ~~G~icl~~l-~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+|.||+++| .++|+|++++.+||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|++++|.
T Consensus 84 -~G~iCl~iL~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 151 (155)
T 1wzv_A 84 -NGQICLPIISSENWKPCTKTCQVLEA-LNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 151 (155)
T ss_dssp -TCBCCCGGGCTTTCCTTCCHHHHHHH-HHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCE
T ss_pred -CCeEeecCCCccCCCCCCcHHHHHHH-HHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999 8999999999999999 999999999999999999999999999999999999999985
No 31
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=6e-49 Score=296.43 Aligned_cols=147 Identities=29% Similarity=0.620 Sum_probs=139.0
Q ss_pred CChHHHHHHHHHh---cCCCCcEEEecCC-CceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccce
Q 031953 2 SSPSKRREMDLMK---LMMSDYKVEMIND-GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (150)
Q Consensus 2 s~~~~Rl~~e~~~---~~~~~~~v~~~~~-~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV 77 (150)
|++.+||++|+++ .+++|+++.+.++ +++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 1 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI 80 (215)
T 1tte_A 1 SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNI 80 (215)
T ss_dssp CTTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSS
T ss_pred ChHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcC
Confidence 5678999999875 4788999999876 56799999999999999999999999999999999999999999999999
Q ss_pred eCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCCC
Q 031953 78 DELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSYV 149 (150)
Q Consensus 78 ~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 149 (150)
+..+|.||+++|+++|+|++++.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||.-
T Consensus 81 ~~~~G~ICL~iL~~~WsP~~ti~~VL~s-I~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~ 151 (215)
T 1tte_A 81 SSVTGAICLDILRNAWSPVITLKSALIS-LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151 (215)
T ss_dssp CSSSSCCCSSTTTCCSCTTCCHHHHHHH-HHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCC
T ss_pred cCCCCEEECccCCCCCCCcCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 9559999999999999999999999999 9999999999999999999999999999999999999999974
No 32
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=7.2e-48 Score=281.07 Aligned_cols=144 Identities=30% Similarity=0.507 Sum_probs=134.8
Q ss_pred CChHHHHHHHHHhc---CCCCcEEEec-CCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccce
Q 031953 2 SSPSKRREMDLMKL---MMSDYKVEMI-NDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77 (150)
Q Consensus 2 s~~~~Rl~~e~~~~---~~~~~~v~~~-~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV 77 (150)
+.+.+||++|++++ +++|+++.+. ++|++.|+++| ||++|+|+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 91 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNI 91 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCC
Confidence 34789999998854 7789999965 57899999998 8999999999999999999999999999999999999999
Q ss_pred eCCCCceeccccCC------CCCCcCCHHHHHHHHHHHhccC-CCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 78 DELSGSVCLDVINQ------TWSPMFDLVNVFEVFLPQLLLY-PNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 78 ~~~~G~icl~~l~~------~W~p~~~i~~il~~~i~~ll~~-p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+ .+|.||+++|.. +|+|++++++||.+ |++||.+ |++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus 92 ~-~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~-i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 92 T-ETGEICLSLLREHSIDGTGWAPTRTLKDVVWG-LNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp C-TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHH-HHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred C-CCCEEechhhccCCCCCCCCCCcCcHHHHHHH-HHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9 599999999975 79999999999999 9999999 69999999999999999999999999999999984
No 33
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=9e-48 Score=281.70 Aligned_cols=147 Identities=23% Similarity=0.460 Sum_probs=134.4
Q ss_pred CCC-hHHHHHHHHHhc-----C------CC---CcEEEe-cCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCC
Q 031953 1 MSS-PSKRREMDLMKL-----M------MS---DYKVEM-INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSP 64 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~~-----~------~~---~~~v~~-~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP 64 (150)
||+ +.+||++|++++ + +. ++.+.+ .++|+++|+++|.||++|+|+||.|+++|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 775 789999998743 2 22 356777 6789999999999999999999999999999999999999
Q ss_pred eEEEec-cccccceeCCCCceeccccC-CCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHh-CHHHHHHHHHh
Q 031953 65 SIGFVN-KIYHPNVDELSGSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMR-DRTAYDQRVKG 141 (150)
Q Consensus 65 ~v~f~t-~i~HpnV~~~~G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~-~~~~f~~~~r~ 141 (150)
+|+|.| +||||||+..+|.||+++|. ++|+|++++++||.+ |++||.+|++++|+|.+||++|++ |+++|+++||+
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~s-i~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~ 161 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHA-VWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKY 161 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHH
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHH
Confidence 999999 99999997558999999998 899999999999999 999999999999999999999999 99999999999
Q ss_pred hccccCC
Q 031953 142 NNPSQSY 148 (150)
Q Consensus 142 ~~~~~~~ 148 (150)
|+++++.
T Consensus 162 ~~~~~~~ 168 (172)
T 2y9m_A 162 FLAERER 168 (172)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998764
No 34
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=1.1e-47 Score=283.67 Aligned_cols=144 Identities=26% Similarity=0.567 Sum_probs=133.2
Q ss_pred CCC--hHHHHHHHHHh---cCCCCcEEE-ecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccc
Q 031953 1 MSS--PSKRREMDLMK---LMMSDYKVE-MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYH 74 (150)
Q Consensus 1 Ms~--~~~Rl~~e~~~---~~~~~~~v~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 74 (150)
|++ +.+||++|+++ .++.|+++. +.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++||
T Consensus 3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 82 (183)
T 3rz3_A 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH 82 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence 554 78999999875 478899999 567799999999999999999999999999999999999999999999999
Q ss_pred cceeCCCCceeccccC-------------CCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHh------CHHHH
Q 031953 75 PNVDELSGSVCLDVIN-------------QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMR------DRTAY 135 (150)
Q Consensus 75 pnV~~~~G~icl~~l~-------------~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~------~~~~f 135 (150)
|||++ +|.||+++|. ++|+|+++|++||.+ |++||.+|++++|+|.+||++|++ |+++|
T Consensus 83 PnV~~-~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~s-i~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y 160 (183)
T 3rz3_A 83 PNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS-VISLLNEPNTFSPANVDASVMYRKWKESKGKDREY 160 (183)
T ss_dssp TTBCT-TSBBCCTTC--------------CCCCTTCCHHHHHHH-HHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHH
T ss_pred CCCCC-CCcEehhhcCcccccccccccccCCCCCcCcHHHHHHH-HHHHHhCCCCCCcccHHHHHHHHhcccccccHHHH
Confidence 99995 9999999996 889999999999999 999999999999999999999998 88999
Q ss_pred HHHHHhhcccc
Q 031953 136 DQRVKGNNPSQ 146 (150)
Q Consensus 136 ~~~~r~~~~~~ 146 (150)
+++||++|++.
T Consensus 161 ~~~v~~~v~~s 171 (183)
T 3rz3_A 161 TDIIRKQVLGT 171 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 35
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=2.9e-48 Score=283.90 Aligned_cols=144 Identities=56% Similarity=1.023 Sum_probs=133.0
Q ss_pred hHHHHHHHHHhcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCCCCc
Q 031953 4 PSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGS 83 (150)
Q Consensus 4 ~~~Rl~~e~~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~~G~ 83 (150)
+.+||++|++++....+.| ..++|+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+||||||++.+|.
T Consensus 13 ~~~RL~~El~~l~~~~~~v-~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~ 91 (171)
T 1yf9_A 13 SNRRREMDYMRLCNSTRKV-YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS 91 (171)
T ss_dssp CCHHHHHHHHHHHSSSSCE-EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHHHHhCCCCC-CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCe
Confidence 5799999999764333455 357899999999999999999999999999999999999999999999999999965899
Q ss_pred eeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 84 VCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 84 icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
||+++|.++|+|++++++||.+++++||.+|++++|+|.+||++|++|+++|.++||+|++++|.
T Consensus 92 iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~ 156 (171)
T 1yf9_A 92 VCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156 (171)
T ss_dssp BCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred EeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999993389999999999999999999999999999999999999885
No 36
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-47 Score=280.83 Aligned_cols=141 Identities=27% Similarity=0.549 Sum_probs=134.3
Q ss_pred ChHHHHHHHHHhc-CCCCcEEE-ecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 3 SPSKRREMDLMKL-MMSDYKVE-MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 3 ~~~~Rl~~e~~~~-~~~~~~v~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
.+.+||++|++++ +++|+++. +.++|+++|+++| ||++|+|+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 26 ~~~~RL~kEl~~l~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~- 103 (180)
T 2nvu_C 26 AAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL- 103 (180)
T ss_dssp HHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT-
T ss_pred HHHHHHHHHHHhcCCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCC-
Confidence 3789999999987 56789998 6788999999998 999999999999999999999999999999999999999995
Q ss_pred CCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhcccc
Q 031953 81 SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQ 146 (150)
Q Consensus 81 ~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~ 146 (150)
+|.||+++|.++|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|.++||++++..
T Consensus 104 ~G~iCl~iL~~~W~p~~~i~~vL~s-i~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~ 168 (180)
T 2nvu_C 104 EGNVALNILREDWKPVLTINSIIYG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 168 (180)
T ss_dssp TSBBCCGGGTTSCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSE
T ss_pred CCcEEcccccccCCCCCCHHHHHHH-HHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999 9999999999999999999999999999999999998864
No 37
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=3e-47 Score=278.85 Aligned_cols=137 Identities=27% Similarity=0.599 Sum_probs=103.1
Q ss_pred hHHHHHHHHHh---cCCCCcEEEecC-CCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeC
Q 031953 4 PSKRREMDLMK---LMMSDYKVEMIN-DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (150)
Q Consensus 4 ~~~Rl~~e~~~---~~~~~~~v~~~~-~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~ 79 (150)
+.+||++|+++ .+++|+++.+.+ +|++.|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+||||||+.
T Consensus 18 ~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~ 97 (172)
T 2awf_A 18 GSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDK 97 (172)
T ss_dssp THHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCC
Confidence 78999999875 478999999876 69999999999999999999999999999999999999999999999999995
Q ss_pred CCCceeccccC-------------CCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHH-HHHHHHHhh
Q 031953 80 LSGSVCLDVIN-------------QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRT-AYDQRVKGN 142 (150)
Q Consensus 80 ~~G~icl~~l~-------------~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~-~f~~~~r~~ 142 (150)
+|.||+++|. ++|+|+++|++||.+ |++||.+|++++|+|.+||++|++|++ +|+++||+|
T Consensus 98 -~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~s-I~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 98 -NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMIS-VISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp -TCBBCCGGGSCC---------CTTSCCTTCCHHHHHHH-HHHHHSCC-----------------------------
T ss_pred -CCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHH-HHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 8999999996 689999999999999 999999999999999999999999999 999999975
No 38
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=1.8e-46 Score=278.48 Aligned_cols=143 Identities=30% Similarity=0.554 Sum_probs=135.3
Q ss_pred CChHHHHHHHHHhc-CCCCcEEE----ecCCCce---eEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccc
Q 031953 2 SSPSKRREMDLMKL-MMSDYKVE----MINDGMQ---EFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (150)
Q Consensus 2 s~~~~Rl~~e~~~~-~~~~~~v~----~~~~~~~---~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 73 (150)
+++.+||++|++++ .++|+++. +.++|++ +|+++|. |++|+|+||.|+++|.||++||++||+|+|.|+||
T Consensus 28 s~a~~RL~kEl~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 106 (190)
T 3o2u_A 28 SAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIF 106 (190)
T ss_dssp CHHHHHHHHHHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred cHHHHHHHHHHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcc
Confidence 45889999999987 56789998 7788999 9999996 88899999999999999999999999999999999
Q ss_pred ccceeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccC
Q 031953 74 HPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQS 147 (150)
Q Consensus 74 HpnV~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~ 147 (150)
||||+. +|.||+++|.++|+|++++++||.+ |+++|.+|++++|+|.+||++|++|+++|+++||+|+++.+
T Consensus 107 HPnV~~-~G~iCl~iL~~~W~p~~~i~~vL~~-i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~ 178 (190)
T 3o2u_A 107 HPNIDL-KGNVCLNILREDWSPALDLQSIITG-LLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGS 178 (190)
T ss_dssp CTTBCT-TSBBCCGGGTTTCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCE
T ss_pred cCCCCC-CCeEechhccCCCCCCCCHHHHHHH-HHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcC
Confidence 999995 9999999999999999999999999 99999999999999999999999999999999999998764
No 39
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=4.6e-47 Score=273.50 Aligned_cols=142 Identities=29% Similarity=0.560 Sum_probs=131.4
Q ss_pred hHHHHHHHHHhc---CCCCcEEEe-cCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeC
Q 031953 4 PSKRREMDLMKL---MMSDYKVEM-INDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDE 79 (150)
Q Consensus 4 ~~~Rl~~e~~~~---~~~~~~v~~-~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~ 79 (150)
|.+||++|++++ +++|+++.. .++|+++|+++|. |++|+|+||.|+++|.||++||++||+|+|.|++|||||+.
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 81 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence 458999999865 667887654 5679999999997 99999999999999999999999999999999999999995
Q ss_pred CCCceeccccC-CCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCC
Q 031953 80 LSGSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSY 148 (150)
Q Consensus 80 ~~G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~ 148 (150)
+|.||+++|. ++|+|++++.+||.+ |++||.+|++++|+|.+||++|++|+++|+++||+|++++|.
T Consensus 82 -~G~iCl~iL~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 149 (154)
T 1c4z_D 82 -KGQVCLPVISAENWKPATKTDQVIQS-LIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149 (154)
T ss_dssp -TCBBCCTTTSSSSCCTTCCHHHHHHH-HHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC--
T ss_pred -CCEEECCCCCCCCCCCCCcHHHHHHH-HHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 9999999996 899999999999999 999999999999999999999999999999999999999985
No 40
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=8.2e-46 Score=270.17 Aligned_cols=140 Identities=25% Similarity=0.472 Sum_probs=130.4
Q ss_pred CCC-hHHHHHHHHHhc---C------------CCCcEEEecCCCceeEEEEEeCCCCCCCC--CcEEEEEEEeCCCCCCC
Q 031953 1 MSS-PSKRREMDLMKL---M------------MSDYKVEMINDGMQEFYVEFNGPKESSYQ--GGVWKIRVELPDAYPYK 62 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~~---~------------~~~~~v~~~~~~~~~w~~~i~gp~~t~y~--gg~f~~~i~fp~~yP~~ 62 (150)
||+ +.+||++|++++ + +.|+.+.+.++|+++|+++|.||++|+|+ ||.|+++|.||++||++
T Consensus 5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 776 789999998754 3 57899999999999999999999999999 99999999999999999
Q ss_pred CCeEEEeccccccceeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccC--CCCCCCccHHHHHHHHhCHHHHHHHHH
Q 031953 63 SPSIGFVNKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLY--PNPSDPLNGEAAALMMRDRTAYDQRVK 140 (150)
Q Consensus 63 pP~v~f~t~i~HpnV~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~--p~~~~~~n~~a~~~~~~~~~~f~~~~r 140 (150)
||+|+|.|++|||||+ .+|.||+++|+++|+|+++++++|+++|++|+.+ |++++|+|.+||++|++|+++|+++||
T Consensus 85 pP~v~f~t~i~HPnv~-~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vr 163 (167)
T 4ds2_A 85 PPTVRFVTPVYSPLVT-GEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVR 163 (167)
T ss_dssp CCEEEESSCCCCSSCC-TTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHT
T ss_pred CCEEEEeCCcccccCC-CCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHh
Confidence 9999999999999999 5999999999999999999999877658888875 899999999999999999999999998
Q ss_pred h
Q 031953 141 G 141 (150)
Q Consensus 141 ~ 141 (150)
+
T Consensus 164 r 164 (167)
T 4ds2_A 164 R 164 (167)
T ss_dssp T
T ss_pred h
Confidence 4
No 41
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1.6e-45 Score=300.13 Aligned_cols=146 Identities=31% Similarity=0.601 Sum_probs=140.0
Q ss_pred CChHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccccccee
Q 031953 2 SSPSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78 (150)
Q Consensus 2 s~~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~ 78 (150)
|.|.+||++|+++ .+++|+++.+.++|++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 3478999999875 4788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhccccCCC
Q 031953 79 ELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQSYV 149 (150)
Q Consensus 79 ~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~ 149 (150)
. +|.||+++|+++|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|++++|..
T Consensus 82 ~-~G~iCl~il~~~W~p~~~i~~vL~~-i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~ 150 (399)
T 4ddg_A 82 S-NGSISLDILRSQWSPALTISKVLLS-ICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG 150 (399)
T ss_dssp T-TCBBCCGGGTTSCCTTCCHHHHHHH-HHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred C-CCeEeCcccccCCCccccHHHHHHH-HHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence 5 9999999999999999999999999 9999999999999999999999999999999999999999864
No 42
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-41 Score=237.31 Aligned_cols=116 Identities=20% Similarity=0.449 Sum_probs=100.8
Q ss_pred CCChHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccc-cccc
Q 031953 1 MSSPSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPN 76 (150)
Q Consensus 1 Ms~~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpn 76 (150)
|++|.+||++|+++ .++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus 4 m~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 83 (125)
T 2fo3_A 4 MGNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTH 83 (125)
T ss_dssp -----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCc
Confidence 78889999999885 4778999999999999999999999999999999999999999999999999999996 9999
Q ss_pred eeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCCCC
Q 031953 77 VDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSD 118 (150)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~ 118 (150)
|+ .+|+||+++|.++|+|++++++||.+ |++||.+|+...
T Consensus 84 v~-~~G~iCl~iL~~~W~P~~~i~~vl~s-i~~ll~~p~~~~ 123 (125)
T 2fo3_A 84 VY-SNGDICLSLLGDDYNPSLSISGLVLS-IISMLSSAKEKK 123 (125)
T ss_dssp BC-TTSBBCCGGGTTTCCTTCCHHHHHHH-HHHHHC------
T ss_pred CC-CCCEEEchhcCCCCCCCCcHHHHHHH-HHHHHhCccccc
Confidence 99 49999999999999999999999999 999999988653
No 43
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=267.72 Aligned_cols=144 Identities=20% Similarity=0.440 Sum_probs=132.0
Q ss_pred hHHHHHHHHHhc---CCC----CcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecc-----
Q 031953 4 PSKRREMDLMKL---MMS----DYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK----- 71 (150)
Q Consensus 4 ~~~Rl~~e~~~~---~~~----~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~----- 71 (150)
+.+||++|++++ +++ ++.+.+.++|++.|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+
T Consensus 77 ~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ 156 (323)
T 3ceg_A 77 RARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSV 156 (323)
T ss_dssp HHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcc
Confidence 789999998854 454 45677888999999999999999999999999999999999999999999998
Q ss_pred ccccceeCCCCceeccccC-------CCCCCcC-CHHHHHHHHHHHhcc--CCCCCCCccHHH--HHHHHhCHHHHHHHH
Q 031953 72 IYHPNVDELSGSVCLDVIN-------QTWSPMF-DLVNVFEVFLPQLLL--YPNPSDPLNGEA--AALMMRDRTAYDQRV 139 (150)
Q Consensus 72 i~HpnV~~~~G~icl~~l~-------~~W~p~~-~i~~il~~~i~~ll~--~p~~~~~~n~~a--~~~~~~~~~~f~~~~ 139 (150)
+|||||+ .+|.||+++|. ++|+|++ +|.+||.+ |++||. +|++++|+|.+| +.+|.+|+++|+++|
T Consensus 157 ifHPNV~-~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLls-IqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~v 234 (323)
T 3ceg_A 157 RFNPNLY-NDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVS-VQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNI 234 (323)
T ss_dssp CCBTTBC-TTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHH-HHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHH
T ss_pred cccCCCC-cCCeEechhhccccCCCcCCCCcCcCCHHHHHHH-HHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHH
Confidence 9999999 59999999997 6899999 89999999 999996 777799999987 678999999999999
Q ss_pred HhhccccCCC
Q 031953 140 KGNNPSQSYV 149 (150)
Q Consensus 140 r~~~~~~~~~ 149 (150)
|+|++++|+.
T Consensus 235 r~~t~k~A~~ 244 (323)
T 3ceg_A 235 RQATVKWAML 244 (323)
T ss_dssp HHHHHHHTTH
T ss_pred HHHHHHHhhH
Confidence 9999999873
No 44
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=1.3e-41 Score=245.26 Aligned_cols=126 Identities=17% Similarity=0.299 Sum_probs=114.3
Q ss_pred ChHHHHHHHHHhc----CCCCcEEEecC-C--CceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccccc
Q 031953 3 SPSKRREMDLMKL----MMSDYKVEMIN-D--GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75 (150)
Q Consensus 3 ~~~~Rl~~e~~~~----~~~~~~v~~~~-~--~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hp 75 (150)
++.+||++|++++ +++|+++.+.+ + |+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+||||
T Consensus 21 ~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HP 100 (156)
T 2q0v_A 21 PRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMS 100 (156)
T ss_dssp CHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccC
Confidence 4789999998864 56789999864 3 599999999999999999999999999999999999999999999999
Q ss_pred ceeCCCCce---eccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhC
Q 031953 76 NVDELSGSV---CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRD 131 (150)
Q Consensus 76 nV~~~~G~i---cl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~ 131 (150)
||+. +|+| |+++|+ +|+|++++++||.+ |++||.+|++++++|.+||.+|.+|
T Consensus 101 NV~~-~G~icisCL~iL~-~WsP~~ti~~vL~s-I~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 101 CVDN-CGRVIKNNLHILK-NWNRNYTIETILIS-LRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp TBCT-TSBBCGGGSHHHH-TCCTTCCHHHHHHH-HHHHTTSTTTTTCCCCCTTCBC---
T ss_pred CCcc-CCeEehhhccccc-CCCCcCcHHHHHHH-HHHHHhCCCCCCcCChHHHHHhhhC
Confidence 9995 8999 889887 59999999999999 9999999999999999999999875
No 45
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=4.8e-42 Score=243.22 Aligned_cols=126 Identities=18% Similarity=0.315 Sum_probs=112.9
Q ss_pred CCC--hHHHHHHHHHhc----CCCCcEEEecC-C--CceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecc
Q 031953 1 MSS--PSKRREMDLMKL----MMSDYKVEMIN-D--GMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNK 71 (150)
Q Consensus 1 Ms~--~~~Rl~~e~~~~----~~~~~~v~~~~-~--~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 71 (150)
||+ +.+||++|++++ +++|+++.+.+ + |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+
T Consensus 2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 81 (138)
T 1jat_B 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISK 81 (138)
T ss_dssp -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcc
Confidence 775 679999999864 56799999854 3 49999999999999999999999999999999999999999999
Q ss_pred ccccceeCCCCce--eccccCCCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHH
Q 031953 72 IYHPNVDELSGSV--CLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALM 128 (150)
Q Consensus 72 i~HpnV~~~~G~i--cl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~ 128 (150)
||||||+..+|.| |+++|. +|+|++++++||.+ |++||.+|++++++|.+|+.+|
T Consensus 82 i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~-i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 82 INLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLD-LRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp CCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHH-HHHHHTSHHHHTSCCCCTTCBC
T ss_pred cccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHH-HHHHHcCCCCCCCCCcchhhcC
Confidence 9999999655999 899886 79999999999999 9999999999999999988654
No 46
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.5e-40 Score=233.85 Aligned_cols=114 Identities=21% Similarity=0.466 Sum_probs=107.2
Q ss_pred CCChHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccc-cccc
Q 031953 1 MSSPSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKI-YHPN 76 (150)
Q Consensus 1 Ms~~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpn 76 (150)
|+++.+||++|+++ .++.|+++.+.++|+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus 18 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn 97 (136)
T 2h2y_A 18 LGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTH 97 (136)
T ss_dssp TTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTT
T ss_pred chHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCc
Confidence 55688999999875 4778999999999999999999999999999999999999999999999999999996 9999
Q ss_pred eeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhccCCCC
Q 031953 77 VDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNP 116 (150)
Q Consensus 77 V~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~~p~~ 116 (150)
|+. +|.||+++|.++|+|++++++||.+ |++||.+|+.
T Consensus 98 v~~-~G~ICl~iL~~~WsP~~ti~~vL~s-i~sll~~p~~ 135 (136)
T 2h2y_A 98 VYS-NGDICLSVLGDDYNPSLSISGLILS-IISMLSSAKE 135 (136)
T ss_dssp BCT-TCCBCCGGGTTTCCTTCCHHHHHHH-HHHHHSSSCC
T ss_pred CCC-CCEEECccccCCCCCCCcHHHHHHH-HHHHHhCcCc
Confidence 995 9999999999999999999999999 9999998874
No 47
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=1.7e-40 Score=240.16 Aligned_cols=121 Identities=20% Similarity=0.322 Sum_probs=110.7
Q ss_pred hHHHHHHHHHhc---CCCC-cEEEec-CCC--ceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccc
Q 031953 4 PSKRREMDLMKL---MMSD-YKVEMI-NDG--MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (150)
Q Consensus 4 ~~~Rl~~e~~~~---~~~~-~~v~~~-~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 76 (150)
+.+||++|++++ +++| +++.+. ++| +++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 26 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 105 (160)
T 2a4d_A 26 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 105 (160)
T ss_dssp HHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTT
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCC
Confidence 679999999864 5567 788874 444 899999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceeccccC--CCCCCcCCHHHHHHHHHHHhcc-CCCCCCCccHHHH
Q 031953 77 VDELSGSVCLDVIN--QTWSPMFDLVNVFEVFLPQLLL-YPNPSDPLNGEAA 125 (150)
Q Consensus 77 V~~~~G~icl~~l~--~~W~p~~~i~~il~~~i~~ll~-~p~~~~~~n~~a~ 125 (150)
|+..+|+||+++|. ++|+|++++++||.+ |++||. +|+.++|+|.|||
T Consensus 106 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~s-I~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 106 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQE-LRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp BCTTTCBBCGGGSHHHHTCCTTCCHHHHHHH-HHHHHTSTTTTTCCCCCTTC
T ss_pred EECCCCEEehhhcCCccCCCccCcHHHHHHH-HHHHHccCCCCCCCCChhhc
Confidence 99558999999998 899999999999999 999994 7999999999987
No 48
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-39 Score=229.85 Aligned_cols=110 Identities=23% Similarity=0.546 Sum_probs=102.4
Q ss_pred CCChHHHHHHHHHh---cCCCCcEEE--ecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccc--
Q 031953 1 MSSPSKRREMDLMK---LMMSDYKVE--MINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY-- 73 (150)
Q Consensus 1 Ms~~~~Rl~~e~~~---~~~~~~~v~--~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~-- 73 (150)
||++.+||++|+++ .+++|+++. +.++|+++|+++|.||+||+|+||.|+++|.||++||++||+|+|.|++|
T Consensus 20 Ms~~~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~ 99 (136)
T 2a7l_A 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPV 99 (136)
T ss_dssp GTTSCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCC
T ss_pred ccHHHHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCC
Confidence 77766999999875 478899875 77889999999999999999999999999999999999999999999999
Q ss_pred ccceeCCCCceeccccCCCCCCcCCHHHHHHHHHHHhcc
Q 031953 74 HPNVDELSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLL 112 (150)
Q Consensus 74 HpnV~~~~G~icl~~l~~~W~p~~~i~~il~~~i~~ll~ 112 (150)
||||+. +|+||+++|+++|+|++++++||.+ |++||.
T Consensus 100 HPNV~~-~G~ICL~iL~~~WsP~~ti~~vL~s-I~slL~ 136 (136)
T 2a7l_A 100 HPHVYS-NGHICLSILTEDWSPALSVQSVCLS-IISMLS 136 (136)
T ss_dssp BTTBCT-TCBBCCGGGTTTCCTTSCHHHHHHH-HHHHTC
T ss_pred CccCCC-CCeEEchhcCCCCCCCCcHHHHHHH-HHHHhC
Confidence 999995 9999999999999999999999999 998873
No 49
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=238.09 Aligned_cols=121 Identities=20% Similarity=0.322 Sum_probs=110.5
Q ss_pred hHHHHHHHHHhc---CCCC-cEEEec-CCC--ceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccc
Q 031953 4 PSKRREMDLMKL---MMSD-YKVEMI-NDG--MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPN 76 (150)
Q Consensus 4 ~~~Rl~~e~~~~---~~~~-~~v~~~-~~~--~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 76 (150)
+.+||++|++++ +++| +++.+. ++| +++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 36 ~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPN 115 (170)
T 2hlw_A 36 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNG 115 (170)
T ss_dssp HHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSS
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCC
Confidence 789999998854 5567 678874 444 999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCceeccccC--CCCCCcCCHHHHHHHHHHHhcc-CCCCCCCccHHHH
Q 031953 77 VDELSGSVCLDVIN--QTWSPMFDLVNVFEVFLPQLLL-YPNPSDPLNGEAA 125 (150)
Q Consensus 77 V~~~~G~icl~~l~--~~W~p~~~i~~il~~~i~~ll~-~p~~~~~~n~~a~ 125 (150)
|+..+|.||+++|. ++|+|++++++||.+ |++||. .|+.++|+|.|||
T Consensus 116 V~~~~G~ICl~iL~~~~~WsP~~ti~~vL~s-I~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 116 VNSSNGVVDPRAISVLAKWQNSYSIKVVLQE-LRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp BCSSSCBBCTTTCHHHHTCCSSCCHHHHHHH-HHHHHHSTTTSSSCCCSSCC
T ss_pred EeCCCCEEEhhhcCCCCCCCccCcHHHHHHH-HHHHHccCCCCCCCCCcccc
Confidence 99559999999998 899999999999999 999996 5999999999987
No 50
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.7e-37 Score=226.22 Aligned_cols=133 Identities=18% Similarity=0.401 Sum_probs=108.9
Q ss_pred hHHHHHHHHHh---cCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCC
Q 031953 4 PSKRREMDLMK---LMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEL 80 (150)
Q Consensus 4 ~~~Rl~~e~~~---~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~ 80 (150)
+.+||++|+++ .+++|+++.+.++|+++|+++|.||++|+|+||+|+++|.||++||++||+|+|.|+ ||||+.
T Consensus 15 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~- 91 (187)
T 2f4w_A 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKC- 91 (187)
T ss_dssp HHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCT-
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceecc-
Confidence 67999999875 478899999999999999999999999999999999999999999999999999999 999994
Q ss_pred CCceecccc---CCCCCCcCCHHHHHHHHHHHhccCCCCCCC---ccHHHHHHHHhCHHHHHHHHH
Q 031953 81 SGSVCLDVI---NQTWSPMFDLVNVFEVFLPQLLLYPNPSDP---LNGEAAALMMRDRTAYDQRVK 140 (150)
Q Consensus 81 ~G~icl~~l---~~~W~p~~~i~~il~~~i~~ll~~p~~~~~---~n~~a~~~~~~~~~~f~~~~r 140 (150)
+|.||+++| .++|+|+++|.+||.+ |++||.+|+++.. .......+|..+...|+.+.+
T Consensus 92 ~G~ICL~iL~~~~~~W~P~~ti~~vL~s-i~sll~~p~p~~g~~~~~~~~r~~~a~~s~~~~~~~~ 156 (187)
T 2f4w_A 92 NTRLCLSITDFHPDTWNPAWSVSTILTG-LLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDK 156 (187)
T ss_dssp TSCBC----------CCTTCCHHHHHHH-HHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCH
T ss_pred CCeEeeeccccCccCCCCcCcHHHHHHH-HHHHhcCCCCCCcccccChHHHHHHHHHHHHHhhcCc
Confidence 899999999 6899999999999999 9999999988644 234445555555555554433
No 51
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=100.00 E-value=1.2e-38 Score=235.61 Aligned_cols=134 Identities=19% Similarity=0.339 Sum_probs=115.6
Q ss_pred CCC-hHHHHHHHHHhc---C---CCCcEEEecCCCceeEEEEEeCC-CCCCCCC-----------cEEEEEEEeCCCCCC
Q 031953 1 MSS-PSKRREMDLMKL---M---MSDYKVEMINDGMQEFYVEFNGP-KESSYQG-----------GVWKIRVELPDAYPY 61 (150)
Q Consensus 1 Ms~-~~~Rl~~e~~~~---~---~~~~~v~~~~~~~~~w~~~i~gp-~~t~y~g-----------g~f~~~i~fp~~yP~ 61 (150)
||+ +.+||++|++++ + +.++++.+.++|+++|+++|.|| ++|+|+| |.|+++|.||++||+
T Consensus 24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~ 103 (186)
T 1zuo_A 24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPF 103 (186)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCC
Confidence 454 789999999865 3 57899999999999999999998 9999998 899999999999999
Q ss_pred CCCeEEEecccccc-ceeCCCCceeccccC-CCCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHHhCHHHHHHHH
Q 031953 62 KSPSIGFVNKIYHP-NVDELSGSVCLDVIN-QTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRTAYDQRV 139 (150)
Q Consensus 62 ~pP~v~f~t~i~Hp-nV~~~~G~icl~~l~-~~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~ 139 (150)
+||+|+|.|++||| ||+ .+|.||+++|. ++|+|+++|++||.+ |++||.+|+... .|..++++|.+++
T Consensus 104 ~PP~V~f~tpi~hPnnV~-~~G~ICL~iL~~~~WsP~~ti~~VL~s-I~slL~~p~a~~--------~~~~~~~~Y~~~~ 173 (186)
T 1zuo_A 104 DPPFVRVVLPVLSGGYVL-GGGALCMELLTKQGWSSAYSIESVIMQ-INATLVKGKARV--------QFGANKNQYNLAR 173 (186)
T ss_dssp SCCEEEEEESCEESTTBC-GGGBBCCGGGSTTTCCTTSCHHHHHHH-HHHHHHHTTCEE--------CTTCCTTCCCHHH
T ss_pred CCCeEEEeCCccCCCccC-CCCcEEeccCCCCCCCCcCcHHHHHHH-HHHHHcCCChhH--------hhccCHHHHhHHH
Confidence 99999999999999 699 59999999997 799999999999999 999999886543 3344566666666
Q ss_pred Hhhcc
Q 031953 140 KGNNP 144 (150)
Q Consensus 140 r~~~~ 144 (150)
++++.
T Consensus 174 ~~~~~ 178 (186)
T 1zuo_A 174 AQQSY 178 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.93 E-value=4.1e-28 Score=173.87 Aligned_cols=112 Identities=19% Similarity=0.295 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCc----------EEEEEEEeCCCCCCCCCeEEEecc-cc
Q 031953 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGG----------VWKIRVELPDAYPYKSPSIGFVNK-IY 73 (150)
Q Consensus 5 ~~Rl~~e~~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~fp~~yP~~pP~v~f~t~-i~ 73 (150)
.+||++|++++.. ++.+.++|+..|.+.+.||+||+|+|| .|.+++.||++||.+||+|+|.+. ++
T Consensus 34 ~~RL~eE~k~L~k---~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~ 110 (172)
T 2z6o_A 34 VQRLKEEYQSLIR---YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGK 110 (172)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHH---HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCC
Confidence 7999999986643 466667899999999999999999999 999999999999999999999998 99
Q ss_pred ccceeCCCCceecccc-CC---CCCCcCCHHHHHHHHHHHhccCCCCCCCccHHHHHHHH
Q 031953 74 HPNVDELSGSVCLDVI-NQ---TWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMM 129 (150)
Q Consensus 74 HpnV~~~~G~icl~~l-~~---~W~p~~~i~~il~~~i~~ll~~p~~~~~~n~~a~~~~~ 129 (150)
||||+. +|+||+|+| ++ .|+|+++|.++|..++ ..++..|+..+..
T Consensus 111 hpnmY~-~G~ICLdIL~kp~Ws~~~P~~~IahiL~lgl---------~pwla~eip~lv~ 160 (172)
T 2z6o_A 111 TAKMYR-GGKICLTDHFKPLWARNVPKFGLAHLMALGL---------GPWLAVEIPDLIQ 160 (172)
T ss_dssp CSSBCT-TSBBCCCTTHHHHHHHHTTSCCHHHHHHHTH---------HHHHHHHHHHHHH
T ss_pred CCCCCC-CCcEechhhccccccccCCccCHHHHHhhcc---------CchhhhhhHHHHH
Confidence 999995 899999999 43 4569999999984422 2335555555543
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.81 E-value=5.5e-20 Score=132.48 Aligned_cols=95 Identities=23% Similarity=0.432 Sum_probs=82.8
Q ss_pred EEEecCCCceeEEEEEeCCCCCCCCCcE---EEEEEEeCCCCCCCCCeEEEec-------c---cc-ccceeCCCCceec
Q 031953 21 KVEMINDGMQEFYVEFNGPKESSYQGGV---WKIRVELPDAYPYKSPSIGFVN-------K---IY-HPNVDELSGSVCL 86 (150)
Q Consensus 21 ~v~~~~~~~~~w~~~i~gp~~t~y~gg~---f~~~i~fp~~yP~~pP~v~f~t-------~---i~-HpnV~~~~G~icl 86 (150)
.+...++...++.+.+.|.-.++|+||. |.+.|.||.+||++||.|.|.+ + |+ ||||| .+|+||+
T Consensus 52 ~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD-~~G~I~l 130 (162)
T 3r3q_A 52 RVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYID-SNGWIAL 130 (162)
T ss_dssp EEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBC-TTSBBCC
T ss_pred eeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCC-CCCcEeC
Confidence 3445567777888888888889999999 8899999999999999998865 1 77 99999 5999999
Q ss_pred cccCCCCCC-cCCHHHHHHHHHHHhccCCCCCC
Q 031953 87 DVINQTWSP-MFDLVNVFEVFLPQLLLYPNPSD 118 (150)
Q Consensus 87 ~~l~~~W~p-~~~i~~il~~~i~~ll~~p~~~~ 118 (150)
++|. +|+| +.++.++|.+ |+++|.+|+++.
T Consensus 131 pyL~-~W~p~~s~L~~ll~~-l~~lf~ep~~d~ 161 (162)
T 3r3q_A 131 PILH-AWDPAAMNLIMVVQE-LMSLLHEPPQDQ 161 (162)
T ss_dssp GGGG-SCCGGGCCHHHHHHH-HHHTTSCCCCCC
T ss_pred cccc-cCCCCcCcHHHHHHH-HHHHhcCCCCCC
Confidence 9995 6988 6899999999 999999999885
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.68 E-value=1.5e-18 Score=121.83 Aligned_cols=95 Identities=18% Similarity=0.398 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCc----------EEEEEEEeCCCCCCCCCeEEEecc-cc
Q 031953 5 SKRREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGG----------VWKIRVELPDAYPYKSPSIGFVNK-IY 73 (150)
Q Consensus 5 ~~Rl~~e~~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg----------~f~~~i~fp~~yP~~pP~v~f~t~-i~ 73 (150)
.+||.+|+..+-. +|+...++-..|...+.||.||+|+|+ .|.+++.||.+||.+||+|+|.+. .+
T Consensus 36 ~~RlkeEy~alI~---yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgk 112 (168)
T 3kpa_A 36 TARLKEEYASLIT---YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGK 112 (168)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHH---HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCc
Confidence 4788888875421 233344455789899999999999999 999999999999999999999995 89
Q ss_pred ccceeCCCCceeccccC-CCC---CCcCCHHHHH
Q 031953 74 HPNVDELSGSVCLDVIN-QTW---SPMFDLVNVF 103 (150)
Q Consensus 74 HpnV~~~~G~icl~~l~-~~W---~p~~~i~~il 103 (150)
|||++ .+|+||++++. .-| .|.++|...|
T Consensus 113 t~kmY-r~GkICLdIhwkPlW~~n~P~fGiahal 145 (168)
T 3kpa_A 113 TVKMY-RGGKICMTTHFFPLWARNVPYFGISHVL 145 (168)
T ss_dssp CSSEE-TTTEECCCTTHHHHHHHTTTTCCHHHHH
T ss_pred Ccccc-CCCcEEeccccchhhHhcCCchhHHHHH
Confidence 99999 59999999871 122 3445566555
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.51 E-value=3.1e-14 Score=100.84 Aligned_cols=78 Identities=24% Similarity=0.477 Sum_probs=68.3
Q ss_pred CCceeEEEEEeCCCCCCCCCcEEE--EEEEeCCCCCCCCCeEEEecc------ccccceeCCCCceeccccCCCCCC-cC
Q 031953 27 DGMQEFYVEFNGPKESSYQGGVWK--IRVELPDAYPYKSPSIGFVNK------IYHPNVDELSGSVCLDVINQTWSP-MF 97 (150)
Q Consensus 27 ~~~~~w~~~i~gp~~t~y~gg~f~--~~i~fp~~yP~~pP~v~f~t~------i~HpnV~~~~G~icl~~l~~~W~p-~~ 97 (150)
.++..|.++|. ..|+|+.|. +.|.||.+||++||.| |.++ ..|+||| .+|+||+++|.+ |++ ..
T Consensus 51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd-~~G~i~lpyL~~-W~~~~s 123 (146)
T 3obq_A 51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVD-ANGKIYLPYLHE-WKHPQS 123 (146)
T ss_dssp CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBC-TTCBBCCHHHHT-CCTTTC
T ss_pred heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCC-CCCCEecccccc-cCCCCC
Confidence 57889999996 679999998 5999999999999999 6665 5899999 599999999965 987 78
Q ss_pred CHHHHHHHHHHHhcc
Q 031953 98 DLVNVFEVFLPQLLL 112 (150)
Q Consensus 98 ~i~~il~~~i~~ll~ 112 (150)
++.+++.. ++.+|.
T Consensus 124 nL~~ll~~-l~~~F~ 137 (146)
T 3obq_A 124 DLLGLIQV-MIVVFG 137 (146)
T ss_dssp CHHHHHHH-HHHHHH
T ss_pred CHHHHHHH-HHHHHh
Confidence 99999999 887774
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.34 E-value=0.013 Score=39.55 Aligned_cols=68 Identities=12% Similarity=0.256 Sum_probs=40.2
Q ss_pred CCChHHHHHHHHHhc---CCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEec
Q 031953 1 MSSPSKRREMDLMKL---MMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70 (150)
Q Consensus 1 Ms~~~~Rl~~e~~~~---~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t 70 (150)
|+....+...|+..+ -+..+.+ .++....+.+.+..-.+..-+.-.+.+.|.+|++||.+||.+...+
T Consensus 8 m~~~~e~q~~EleaL~sIy~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~ 78 (128)
T 2ebm_A 8 MTDYGEEQRNELEALESIYPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS 78 (128)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred CCChHHHHHHHHHHHHHHccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence 333345555666533 4444433 3333455666664222222234478899999999999999998754
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=93.80 E-value=0.23 Score=33.19 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=38.1
Q ss_pred HHHHHHHHh---cCCCCcEEEecC--CCceeEEEEEeCCCCCCC--CCcEEEEEEEeCCCCCCCCCeEEEec
Q 031953 6 KRREMDLMK---LMMSDYKVEMIN--DGMQEFYVEFNGPKESSY--QGGVWKIRVELPDAYPYKSPSIGFVN 70 (150)
Q Consensus 6 ~Rl~~e~~~---~~~~~~~v~~~~--~~~~~w~~~i~gp~~t~y--~gg~f~~~i~fp~~yP~~pP~v~f~t 70 (150)
.+...|+.- +-+..+.+.-.. .+...+.+.+..+.+..- ..-.+.+.|.+|++||..+|.+...+
T Consensus 11 e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 11 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp CHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence 345556543 344445443221 134555666643222111 12478899999999999999998776
No 58
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=93.69 E-value=0.25 Score=33.48 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=29.1
Q ss_pred ceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEec
Q 031953 29 MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70 (150)
Q Consensus 29 ~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t 70 (150)
...+.+.+.+..+ .-..-.+.+.+.+|++||..+|.|...+
T Consensus 45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence 4566777753222 1123478899999999999999998765
No 59
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.63 E-value=0.26 Score=33.02 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=28.7
Q ss_pred ceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEec
Q 031953 29 MQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVN 70 (150)
Q Consensus 29 ~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t 70 (150)
...+.+.+.. .+..-..-.+.+.|.+|++||..+|.+...+
T Consensus 39 ~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~ 79 (128)
T 2ebk_A 39 GTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS 79 (128)
T ss_dssp CEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred CCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence 4577777753 2211113478999999999999999987553
No 60
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=90.87 E-value=0.45 Score=33.10 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=21.1
Q ss_pred EEEEEEEeCCCCCCCCCeEEEec
Q 031953 48 VWKIRVELPDAYPYKSPSIGFVN 70 (150)
Q Consensus 48 ~f~~~i~fp~~yP~~pP~v~f~t 70 (150)
.+.+.|.+|.+||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 79999999999999999998665
No 61
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=90.33 E-value=0.15 Score=34.58 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.5
Q ss_pred cEEEEEEEeCCCCCCCCCeEEEe
Q 031953 47 GVWKIRVELPDAYPYKSPSIGFV 69 (150)
Q Consensus 47 g~f~~~i~fp~~yP~~pP~v~f~ 69 (150)
-.+.+.|.||++||..+|.|...
T Consensus 63 ~~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 63 VQVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp CEEEEEECCCTTTTSSCCCCEEE
T ss_pred eEEEEEEECCCCCCCCCCcEEEe
Confidence 46899999999999999999874
No 62
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=89.61 E-value=0.29 Score=33.86 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.6
Q ss_pred cEEEEEEEeCCCCCCCCCeEEEecc
Q 031953 47 GVWKIRVELPDAYPYKSPSIGFVNK 71 (150)
Q Consensus 47 g~f~~~i~fp~~yP~~pP~v~f~t~ 71 (150)
-.+.+.|.+|.+||..||.+.....
T Consensus 73 ~~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 73 AMFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEEECSSTTSSCCCCEEECT
T ss_pred ceEEEEEECCCCCCCCCCeEEEEcc
Confidence 3688999999999999999987663
No 63
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=88.82 E-value=1.2 Score=32.10 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=55.4
Q ss_pred HHHHHHHhcCCCCcEEEecCCCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEeccccccceeCCCCceec
Q 031953 7 RREMDLMKLMMSDYKVEMINDGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCL 86 (150)
Q Consensus 7 Rl~~e~~~~~~~~~~v~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HpnV~~~~G~icl 86 (150)
||.+|+..+.=. .+.-.+.++....+.+..-. |....++|.++.+||.++|.+.-.-|+ |.
T Consensus 5 ~li~Ei~~iGW~--~l~~id~~~~~i~l~~~D~~-----gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~---------- 65 (186)
T 3zqs_A 5 SLIEEIGTLGWD--KLVYADTCFSTIKLKAEDAS-----GREHLITLKLKAKYPAESPDYFVDFPV--PF---------- 65 (186)
T ss_dssp SHHHHHHHHCGG--GEEEECTTSSEEEEEEECTT-----SCEEEEEEECCTTTTTSCCEEECCCSS--CC----------
T ss_pred HHHHHHHHhCCc--eeeeecCCccEEEEEEEeCC-----CCeEEEEEEECCCCCCCCCeeEEcCCC--Cc----------
Confidence 567777755221 12223457788888887433 678899999999999999987654432 11
Q ss_pred cccCCCCCCcCCHHHHHHHHHHHhc
Q 031953 87 DVINQTWSPMFDLVNVFEVFLPQLL 111 (150)
Q Consensus 87 ~~l~~~W~p~~~i~~il~~~i~~ll 111 (150)
.-.|++..++.+++.+ ++..+
T Consensus 66 ---~~~w~~~ssL~~v~~q-F~~~L 86 (186)
T 3zqs_A 66 ---CASWTPQSSLISIYSQ-FLAAI 86 (186)
T ss_dssp ---CCCCCTTCCHHHHHHH-HHHHH
T ss_pred ---ccccCCCccHHHHHHH-HHHHH
Confidence 1259998999998877 44433
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=83.08 E-value=0.24 Score=32.79 Aligned_cols=36 Identities=6% Similarity=0.003 Sum_probs=0.0
Q ss_pred ccCCCCCCCccHHHHHHHHhCHHHHHHHHHhhcccc
Q 031953 111 LLYPNPSDPLNGEAAALMMRDRTAYDQRVKGNNPSQ 146 (150)
Q Consensus 111 l~~p~~~~~~n~~a~~~~~~~~~~f~~~~r~~~~~~ 146 (150)
|.-.....|.+.++|++|.+|++.|...||.|+..+
T Consensus 18 ~~~~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~ 53 (108)
T 2cwb_A 18 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDD 53 (108)
T ss_dssp ------------------------------------
T ss_pred ccCcccCCchhHHHHHHHHhchhccccccccccccC
Confidence 334456788999999999999999999999998433
No 65
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=43.80 E-value=74 Score=22.49 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=33.0
Q ss_pred CCceeEEEEEeCCCCCCCCCcEEEEEEEeCCCCCCCCCeEEEecccc
Q 031953 27 DGMQEFYVEFNGPKESSYQGGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (150)
Q Consensus 27 ~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 73 (150)
+..+.|.+.+.|+.+.--..-+=++.+.+.+.||. |...+..+-|
T Consensus 30 ~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~n--p~Rvv~~PPF 74 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPN--PVRSIEAPPF 74 (175)
T ss_dssp TCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSS--CEEEECSSSE
T ss_pred CCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCC--CcEEEeCCCC
Confidence 46789999999987654444466899999999974 6666655533
No 66
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=30.43 E-value=47 Score=24.07 Aligned_cols=25 Identities=28% Similarity=0.634 Sum_probs=21.6
Q ss_pred CCcEEEEEEEeCCCCCC-----CCCeEEEe
Q 031953 45 QGGVWKIRVELPDAYPY-----KSPSIGFV 69 (150)
Q Consensus 45 ~gg~f~~~i~fp~~yP~-----~pP~v~f~ 69 (150)
+.|.|.|+-.+|--||. .||.|.|.
T Consensus 109 ~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 109 GTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 46899999999999998 78888775
No 67
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=25.75 E-value=1.6e+02 Score=19.97 Aligned_cols=44 Identities=9% Similarity=0.169 Sum_probs=32.8
Q ss_pred CceeEE--EEEeCCCCCCCC-CcEEEEEEEeCCCCCCCCCeEEEecccc
Q 031953 28 GMQEFY--VEFNGPKESSYQ-GGVWKIRVELPDAYPYKSPSIGFVNKIY 73 (150)
Q Consensus 28 ~~~~w~--~~i~gp~~t~y~-gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 73 (150)
-+++|. +.+.|+.|.... .-+=++.+.+.+.|+ .|...+..+-|
T Consensus 31 ~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~--np~r~v~~pPF 77 (140)
T 3qrl_A 31 PVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFA--NPNRTFTDPPF 77 (140)
T ss_dssp CCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSS--SCEEEECSTTC
T ss_pred cccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCC--CCeEEEcCCCc
Confidence 357998 889999888654 345578888999887 48777776644
No 68
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=21.81 E-value=92 Score=17.94 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=17.7
Q ss_pred ccHHHHHHHHhCHHHHHHHH
Q 031953 120 LNGEAAALMMRDRTAYDQRV 139 (150)
Q Consensus 120 ~n~~a~~~~~~~~~~f~~~~ 139 (150)
-|++.+++...|+++|.+..
T Consensus 37 ~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 37 ENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp HCHHHHHHHHHSHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHH
Confidence 58999999999999998875
No 69
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=20.91 E-value=24 Score=16.40 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=7.1
Q ss_pred CCeEEEecccccc
Q 031953 63 SPSIGFVNKIYHP 75 (150)
Q Consensus 63 pP~v~f~t~i~Hp 75 (150)
.|.-.|..+-|||
T Consensus 7 lpenyfserpyhp 19 (26)
T 2jrw_A 7 LPENYFSERPYHP 19 (26)
T ss_dssp CSSSSCCSSSCCS
T ss_pred cchhhcccCCCCC
Confidence 3344466666666
No 70
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus subtilis}
Probab=20.47 E-value=63 Score=26.87 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=21.5
Q ss_pred cHHHHHHHHhCHHHHHHHHHhhcccc
Q 031953 121 NGEAAALMMRDRTAYDQRVKGNNPSQ 146 (150)
Q Consensus 121 n~~a~~~~~~~~~~f~~~~r~~~~~~ 146 (150)
-.|+..+..+|+++|.+.|+++.+++
T Consensus 277 ~ee~~~l~~~dp~~~~~~~~~Sm~rh 302 (552)
T 2fkn_A 277 LDEADRLRQDTPELYVRLAKQSMKKH 302 (552)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 45677788899999999999987654
No 71
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=20.39 E-value=93 Score=18.62 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=19.2
Q ss_pred ccHHHHHHHHhCHHHHHHHHHh
Q 031953 120 LNGEAAALMMRDRTAYDQRVKG 141 (150)
Q Consensus 120 ~n~~a~~~~~~~~~~f~~~~r~ 141 (150)
-|++.+++...|+++|.+..-+
T Consensus 39 ~NPqL~q~I~~n~e~Fl~ll~e 60 (72)
T 1pve_A 39 ENPQLLQQISQHQEHFIQMLNE 60 (72)
T ss_dssp TCHHHHHHHHTTHHHHHHHHHS
T ss_pred HCHHHHHHHHHCHHHHHHHHcC
Confidence 5899999999999999988754
No 72
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=20.24 E-value=64 Score=26.82 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=21.5
Q ss_pred cHHHHHHHHhCHHHHHHHHHhhcccc
Q 031953 121 NGEAAALMMRDRTAYDQRVKGNNPSQ 146 (150)
Q Consensus 121 n~~a~~~~~~~~~~f~~~~r~~~~~~ 146 (150)
-.++..+..+|+++|.+.|+++.+++
T Consensus 276 ~ee~~~l~~~dp~~~~~~~~~Sm~rh 301 (551)
T 1x87_A 276 LDEAAELRARDPKQYIARAKQSIAAH 301 (551)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 45677788899999999999987654
No 73
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=20.04 E-value=65 Score=26.82 Aligned_cols=26 Identities=8% Similarity=-0.083 Sum_probs=21.5
Q ss_pred cHHHHHHHHhCHHHHHHHHHhhcccc
Q 031953 121 NGEAAALMMRDRTAYDQRVKGNNPSQ 146 (150)
Q Consensus 121 n~~a~~~~~~~~~~f~~~~r~~~~~~ 146 (150)
-.|+..+..+|+++|.+.|+++.+++
T Consensus 281 ~ee~~~l~~~dp~~~~~~~~~Sm~rh 306 (557)
T 1uwk_A 281 WEQYRDRAQTEPAAVVKAAKQSMAVH 306 (557)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 45677788899999999999987654
Done!