Query 031954
Match_columns 150
No_of_seqs 119 out of 197
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 07:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2308 Phosphatidic acid-pref 99.9 2.6E-23 5.6E-28 194.6 4.9 143 1-146 88-234 (741)
2 PF02825 WWE: WWE domain; Int 95.8 0.012 2.7E-07 39.3 3.4 30 93-122 8-37 (72)
3 smart00678 WWE Domain in Delte 94.9 0.043 9.3E-07 37.2 3.8 28 94-121 2-29 (73)
4 PF02825 WWE: WWE domain; Int 61.4 14 0.00031 24.3 3.6 34 58-92 39-72 (72)
5 KOG2308 Phosphatidic acid-pref 50.4 6.1 0.00013 38.8 0.4 56 62-120 75-142 (741)
6 PF08635 ox_reductase_C: Putat 50.0 22 0.00047 28.5 3.4 17 14-32 37-53 (142)
7 PF15651 Tox-SGS: Salivary gla 31.2 28 0.00061 26.3 1.3 29 77-109 44-72 (100)
8 PF08043 Xin: Xin repeat; Int 24.6 59 0.0013 17.1 1.4 15 89-108 2-16 (16)
9 PF14237 DUF4339: Domain of un 20.7 85 0.0018 19.3 1.9 26 95-120 2-28 (45)
10 COG3816 Uncharacterized protei 20.1 60 0.0013 27.2 1.4 13 87-99 46-59 (205)
No 1
>KOG2308 consensus Phosphatidic acid-preferring phospholipase A1, contains DDHD domain [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.6e-23 Score=194.61 Aligned_cols=143 Identities=31% Similarity=0.510 Sum_probs=112.2
Q ss_pred ChhhHHhhHHHHHHHHHHHHHHhcCCCCCccCCccccchhhhccccccchhhhhccC---ceeeEEecCceeEEecCCee
Q 031954 1 MVEHLLQREEELLSNWWKEYAECSEGPRERASSIKKSDVQASLTESVRSAELYEVEE---ERVGVPVKGGLYEVDLVRRH 77 (150)
Q Consensus 1 ~~~~~~~r~~~l~~~~w~~~ae~~~g~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~---~~~~V~V~ggLydVdl~~r~ 77 (150)
+.++|+.|..+....||++|+.|..+..-.-++-.+....- -+.++|+.|++... +..+|+|+||+|+||+.+|+
T Consensus 88 ~~~~~~~~~~~~p~~~~r~~s~~~~~~~~~~~~~~~~~~~p--~~~~ds~~le~~~~~~~e~~~v~v~gG~Y~Vd~~~r~ 165 (741)
T KOG2308|consen 88 LHASFLPRDSEAPEYWVRQYSGVNPHEFYRLTSEYKSTWTP--SEHSDSDDLEEGENDDQESPPVVVEGGLYEVDKENRK 165 (741)
T ss_pred cccccccccccCcccccccccCCCCChhhhccccccccccc--cccccccccccccccCCccCceeecCCeeeeeeeccc
Confidence 35789999999999999999999888777665444433311 12357777775554 89999999999999999999
Q ss_pred eeeeecCCCCcceEeeeeeeeCCCCceeeCCHHHHHHHHHHHhccccccccccCccccee-EEEEeccee
Q 031954 78 CFPVYWNGDNRRVLRGHWFARKGGLDWLPIREDVAEQLEIAYRSQVWHRRTFNLLDFLQL-ELTWSSCTF 146 (150)
Q Consensus 78 ~~PVYW~g~~~eVrRGtWF~~~~~~~~~Pl~e~lA~~LE~~Y~~~~W~~~l~~p~~~a~~-~l~~h~~~V 146 (150)
|.||||+|+.++||||+||+++ +++|+||+|++|++||.+|+++.|.+.+..+..-+++ ++.+||+.|
T Consensus 166 ~~pvYW~~d~~ev~Rg~WF~~~-~~~~~P~~e~~s~qlE~~yl~~~~~~~~~~~~~~~~~s~~s~~g~~v 234 (741)
T KOG2308|consen 166 CSPVYWSGDEKEVRRGTWFFDG-GSTLQPLEEELSEQLEAEYLNSFRTQELPENFTLFTASYISIHGKPV 234 (741)
T ss_pred ccCCCCCCCcccceeeeeeecC-CCceeeccchhHHHHHHHHHHHhhhcccccccccccceeeeecCCce
Confidence 9999999999999999999986 7899999999999999999987655444443332222 366666654
No 2
>PF02825 WWE: WWE domain; InterPro: IPR004170 The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein-protein interactions in ubiquitin and ADP ribose conjugation systems. This domain is found as a tandem repeat at the N-terminal of Deltex, a cytosolic effector of Notch signalling thought to bind the N-terminal of the Notch receptor []. It is also found as an interaction module in protein ubiquination and ADP ribosylation proteins [].; PDB: 2A90_A 1UJR_A 2DK6_A 3V3L_B.
Probab=95.76 E-value=0.012 Score=39.31 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=23.9
Q ss_pred eeeeeeCCCCceeeCCHHHHHHHHHHHhcc
Q 031954 93 GHWFARKGGLDWLPIREDVAEQLEIAYRSQ 122 (150)
Q Consensus 93 GtWF~~~~~~~~~Pl~e~lA~~LE~~Y~~~ 122 (150)
..|++.++++.|.||+++++..||++|+.+
T Consensus 8 ~~W~w~~~~~~W~~Y~~~~~~~IE~a~~~~ 37 (72)
T PF02825_consen 8 YVWQWEDDDGGWHPYDPEVSEIIEEAYQNG 37 (72)
T ss_dssp EEEEEESETSSEEE--HHHHHHHHHHHHTT
T ss_pred EEEEEECCCCcEEeCCcHHHHHHHHHHHcC
Confidence 468887556799999999999999999964
No 3
>smart00678 WWE Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis.
Probab=94.87 E-value=0.043 Score=37.20 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.9
Q ss_pred eeeeeCCCCceeeCCHHHHHHHHHHHhc
Q 031954 94 HWFARKGGLDWLPIREDVAEQLEIAYRS 121 (150)
Q Consensus 94 tWF~~~~~~~~~Pl~e~lA~~LE~~Y~~ 121 (150)
.|++.++.+.|.||+...+..||++|..
T Consensus 2 ~W~w~~~~g~W~~Y~~~~~~~IE~ay~~ 29 (73)
T smart00678 2 VWEYEGRNGKWWPYDPRVSEDIEEAYAA 29 (73)
T ss_pred EEEEECCCCCeeeCChHHHHHHHHHHHc
Confidence 5888766668999999999999999996
No 4
>PF02825 WWE: WWE domain; InterPro: IPR004170 The WWE domain is named after three of its conserved residues and is predicted to mediate specific protein-protein interactions in ubiquitin and ADP ribose conjugation systems. This domain is found as a tandem repeat at the N-terminal of Deltex, a cytosolic effector of Notch signalling thought to bind the N-terminal of the Notch receptor []. It is also found as an interaction module in protein ubiquination and ADP ribosylation proteins [].; PDB: 2A90_A 1UJR_A 2DK6_A 3V3L_B.
Probab=61.40 E-value=14 Score=24.30 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=23.9
Q ss_pred ceeeEEecCceeEEecCCeeeeeeecCCCCcceEe
Q 031954 58 ERVGVPVKGGLYEVDLVRRHCFPVYWNGDNRRVLR 92 (150)
Q Consensus 58 ~~~~V~V~ggLydVdl~~r~~~PVYW~g~~~eVrR 92 (150)
....|.+.+..|.||+.+|.-...--. ...+|+|
T Consensus 39 ~~~~~~~~~~~Y~IDF~~M~Q~n~~t~-~~R~IrR 72 (72)
T PF02825_consen 39 KSCQLSIGGRPYTIDFKSMTQINKDTG-TTRPIRR 72 (72)
T ss_dssp SEEEEEETTEEEEEETTTTEEEESSSS--EEEEEE
T ss_pred cEEEEEeCCcEEEEEChhcEEEeCCCC-CEeecCC
Confidence 355566779999999999987766544 4455555
No 5
>KOG2308 consensus Phosphatidic acid-preferring phospholipase A1, contains DDHD domain [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.35 E-value=6.1 Score=38.77 Aligned_cols=56 Identities=21% Similarity=0.162 Sum_probs=47.2
Q ss_pred EEec-CceeEEecCCeeeeeeecCCCCcceE-----------eeeeeeeCCCCceeeCCHHHHHHHHHHHh
Q 031954 62 VPVK-GGLYEVDLVRRHCFPVYWNGDNRRVL-----------RGHWFARKGGLDWLPIREDVAEQLEIAYR 120 (150)
Q Consensus 62 V~V~-ggLydVdl~~r~~~PVYW~g~~~eVr-----------RGtWF~~~~~~~~~Pl~e~lA~~LE~~Y~ 120 (150)
..|. +.+.+|+.......|-+|..+.+.|| |++|+++. .+.|.+-..+..||+.|.
T Consensus 75 ~e~~~~~l~~~~~~~~~~~~~~~~~p~~~~r~~s~~~~~~~~~~~~~~~~---~~~p~~~~ds~~le~~~~ 142 (741)
T KOG2308|consen 75 EEVFRDVLSEVDTLHASFLPRDSEAPEYWVRQYSGVNPHEFYRLTSEYKS---TWTPSEHSDSDDLEEGEN 142 (741)
T ss_pred cccchhhcccccccccccccccccCcccccccccCCCCChhhhccccccc---cccccccccccccccccc
Confidence 4454 79999999999999999999888777 66666653 789999999999999998
No 6
>PF08635 ox_reductase_C: Putative oxidoreductase C terminal; InterPro: IPR013944 This is the C terminus of putative oxidoreductases.
Probab=50.02 E-value=22 Score=28.51 Aligned_cols=17 Identities=29% Similarity=0.739 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCCCCccC
Q 031954 14 SNWWKEYAECSEGPRERAS 32 (150)
Q Consensus 14 ~~~w~~~ae~~~g~~~~~~ 32 (150)
..||.. .+|+||+--++
T Consensus 37 ~~WW~k--s~sgGpiVEQa 53 (142)
T PF08635_consen 37 PFWWNK--SKSGGPIVEQA 53 (142)
T ss_pred chhhhh--cccCCCeeeeh
Confidence 368865 89999988776
No 7
>PF15651 Tox-SGS: Salivary glad secreted protein domain toxin
Probab=31.22 E-value=28 Score=26.34 Aligned_cols=29 Identities=21% Similarity=0.510 Sum_probs=24.4
Q ss_pred eeeeeecCCCCcceEeeeeeeeCCCCceeeCCH
Q 031954 77 HCFPVYWNGDNRRVLRGHWFARKGGLDWLPIRE 109 (150)
Q Consensus 77 ~~~PVYW~g~~~eVrRGtWF~~~~~~~~~Pl~e 109 (150)
.|.||.|.|-+.-+.+|.++.= -|.|+..
T Consensus 44 ~C~Pi~w~G~pSv~C~Gq~ssf----iyTp~~~ 72 (100)
T PF15651_consen 44 SCMPIEWHGQPSVSCDGQQSSF----IYTPYET 72 (100)
T ss_pred CCcceeECCccceeeccceeee----EEccccC
Confidence 5999999999999999999863 5677764
No 8
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=24.57 E-value=59 Score=17.15 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=11.5
Q ss_pred ceEeeeeeeeCCCCceeeCC
Q 031954 89 RVLRGHWFARKGGLDWLPIR 108 (150)
Q Consensus 89 eVrRGtWF~~~~~~~~~Pl~ 108 (150)
.|..++|.+.. +|++
T Consensus 2 DV~~~~wlFEt-----qplD 16 (16)
T PF08043_consen 2 DVKTTRWLFET-----QPLD 16 (16)
T ss_pred CcceeEEEeec-----ccCC
Confidence 47889999975 6764
No 9
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=20.68 E-value=85 Score=19.31 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=19.6
Q ss_pred eeeeCCCCceeeCC-HHHHHHHHHHHh
Q 031954 95 WFARKGGLDWLPIR-EDVAEQLEIAYR 120 (150)
Q Consensus 95 WF~~~~~~~~~Pl~-e~lA~~LE~~Y~ 120 (150)
||+..++...=|++ ++|...|.++-.
T Consensus 2 Wy~~~~g~~~GP~s~~el~~l~~~g~i 28 (45)
T PF14237_consen 2 WYYARNGQQQGPFSLEELRQLISSGEI 28 (45)
T ss_pred EEEeCCCeEECCcCHHHHHHHHHcCCC
Confidence 89987776788998 667777776554
No 10
>COG3816 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.10 E-value=60 Score=27.16 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=10.6
Q ss_pred CcceEe-eeeeeeC
Q 031954 87 NRRVLR-GHWFARK 99 (150)
Q Consensus 87 ~~eVrR-GtWF~~~ 99 (150)
-.+|++ |||||-+
T Consensus 46 DmeIr~DGtWFylG 59 (205)
T COG3816 46 DMEIRADGTWFYLG 59 (205)
T ss_pred eeEEecCceEEEec
Confidence 468887 9999964
Done!