BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031955
         (150 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KMW|A Chain A, Solution Structure Of At3g03773.1 Protein From Arabidopsis
           Thaliana
          Length = 150

 Score =  213 bits (541), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 105/148 (70%), Positives = 119/148 (80%), Gaps = 3/148 (2%)

Query: 2   SRHPEVLWAQRSDKVYLTISLPDAKDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTL 61
           SR+PEVLWAQRSDKVYLT++LPDAKDISVKCEPQG+F FSA+G QGE F+FSLEL+GK +
Sbjct: 2   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIM 61

Query: 62  PEKCKTKVGLRNIICSVQKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDEGXXXXXXX 121
            E  K  VGLRNII S+QKEE+ WW RLLKSEEKPAPYIKVDWNKWCDED+E        
Sbjct: 62  TEYRKN-VGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDEE--VNSETA 118

Query: 122 XXXXXEHVGQNDESSDDEGMLYLPDLEK 149
                  V Q+ ESSDD+G+LYLPDLEK
Sbjct: 119 SDDESAFVNQDSESSDDDGLLYLPDLEK 146


>pdb|2CG9|X Chain X, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
           Complex
 pdb|2CG9|Y Chain Y, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
           Complex
          Length = 134

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 16/124 (12%)

Query: 5   PEVLWAQRS-------DKVYLTISLPD--AKDISVKCEPQGIFGFSAVGVQGE---LFDF 52
           P+V WAQRS       + V +T+S+ D  A ++++K     +   S   V  E    +  
Sbjct: 7   PQVAWAQRSSTTDPERNYVLITVSIADCDAPELTIKPSYIELKAQSKPHVGDENVHHYQL 66

Query: 53  SLELFGKTLPEKCKTKV--GLRNIICSVQKE-EKGWWKRLLKSEEKPAPYIKVDWNKWCD 109
            ++L+ + +PEK   KV  G    +   +K+ E  +W RL K + K  PYIK D++KW D
Sbjct: 67  HIDLYKEIIPEKTMHKVANGQHYFLKLYKKDLESEYWPRLTKEKVK-YPYIKTDFDKWVD 125

Query: 110 EDDE 113
            D++
Sbjct: 126 ADEQ 129


>pdb|1EJF|A Chain A, Crystal Structure Of The Human Co-Chaperone P23
 pdb|1EJF|B Chain B, Crystal Structure Of The Human Co-Chaperone P23
          Length = 125

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 9   WAQRSDKVYLTISLPDAKDISVKCEPQGIFGFSAVGVQGELFDFS-LELFGKTLPEKCKT 67
           W  R D V++   + D+KD++V  E   +  FS +G        + ++LF    P   K 
Sbjct: 8   WYDRRDYVFIEFCVEDSKDVNVNFEKSKL-TFSCLGGSDNFKHLNEIDLFHCIDPNDSKH 66

Query: 68  KVGLRNIICSVQKEEKGW-WKRLLKSEEKPAPYIKVDWNKWCDEDDEG 114
           K   R+I+C ++K E G  W RL K E     ++ VD+N W D +D+ 
Sbjct: 67  KRTDRSILCCLRKGESGQSWPRLTK-ERAKLNWLSVDFNNWKDWEDDS 113


>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
          Length = 114

 Score = 31.6 bits (70), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 9   WAQRSDKVYLTISLPDAK--DISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCK 66
           W Q   +V +T+ + + +  D++V+   + +     +   GE ++  LEL    +PE+  
Sbjct: 14  WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLP-SGEDYNLKLELLHPIIPEQST 72

Query: 67  TKVGLRNIICSVQKEEKGWWKRLLKSEEKPAP 98
            KV    I   ++K E   W++L    + P P
Sbjct: 73  FKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTP 104


>pdb|1NY9|A Chain A, Antibiotic Binding Domain Of A Tipa-Class Multidrug
           Resistance Transcriptional Regulator
          Length = 143

 Score = 27.3 bits (59), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 54  LELFGKTLPEKCKTKVGLRNIICSVQKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDE 113
            E+FG   P++ + +V          +E  G      +S+EK A Y K DW +  DE DE
Sbjct: 10  FEVFGDFDPDQYEEEV----------RERWGNTDAYRQSKEKTASYTKEDWQRIQDEADE 59


>pdb|2CSF|A Chain A, Solution Structure Of The Second Cut Domain Of Human Satb2
          Length = 101

 Score = 25.8 bits (55), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 14/66 (21%), Positives = 27/66 (40%)

Query: 43  VGVQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKEEKGWWKRLLKSEEKPAPYIKV 102
           + V G   + +  ++ +   E  + KV           + +GW   LL+ +E P+P  + 
Sbjct: 9   IKVDGANINITAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRT 68

Query: 103 DWNKWC 108
            W   C
Sbjct: 69  LWENLC 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.136    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,554,326
Number of Sequences: 62578
Number of extensions: 169418
Number of successful extensions: 233
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 9
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)