Query 031955
Match_columns 150
No_of_seqs 155 out of 790
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:39:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3158 HSP90 co-chaperone p23 100.0 9.3E-37 2E-41 233.3 10.1 141 2-148 5-164 (180)
2 cd00237 p23 p23 binds heat sho 100.0 3.1E-35 6.7E-40 211.2 12.9 105 4-110 1-106 (106)
3 cd06465 p23_hB-ind1_like p23_l 100.0 1.6E-30 3.4E-35 186.2 12.9 106 5-112 1-108 (108)
4 cd06489 p23_CS_hSgt1_like p23_ 99.9 1.4E-22 3E-27 138.8 9.3 82 8-90 1-84 (84)
5 cd06488 p23_melusin_like p23_l 99.9 1.3E-21 2.9E-26 135.3 10.9 85 5-90 1-87 (87)
6 cd06468 p23_CacyBP p23_like do 99.8 1.1E-20 2.3E-25 131.0 10.9 84 6-90 3-92 (92)
7 PLN03088 SGT1, suppressor of 99.8 5.6E-21 1.2E-25 161.5 8.3 106 5-111 157-283 (356)
8 cd06466 p23_CS_SGT1_like p23_l 99.8 3.8E-20 8.3E-25 125.5 9.0 82 8-90 1-84 (84)
9 PF04969 CS: CS domain; Inter 99.8 7.7E-18 1.7E-22 111.8 11.6 75 5-80 1-79 (79)
10 cd06463 p23_like Proteins cont 99.8 5.3E-18 1.2E-22 113.3 9.9 81 9-90 1-84 (84)
11 cd06469 p23_DYX1C1_like p23_li 99.8 5.2E-18 1.1E-22 113.8 9.1 76 9-90 1-78 (78)
12 cd06467 p23_NUDC_like p23_like 99.8 8.9E-18 1.9E-22 114.3 9.8 80 7-90 1-85 (85)
13 KOG1309 Suppressor of G2 allel 99.8 1.8E-18 3.8E-23 133.7 6.7 114 4-118 3-133 (196)
14 cd06493 p23_NUDCD1_like p23_NU 99.7 2.4E-17 5.3E-22 113.3 10.2 80 7-90 1-85 (85)
15 cd06492 p23_mNUDC_like p23-lik 99.7 1.9E-16 4.2E-21 109.9 9.5 80 7-90 1-87 (87)
16 cd06495 p23_NUDCD3_like p23-li 99.7 4.5E-16 9.8E-21 111.1 11.5 92 3-95 3-99 (102)
17 cd06494 p23_NUDCD2_like p23-li 99.7 7.1E-16 1.5E-20 108.4 10.1 83 3-90 4-93 (93)
18 cd06490 p23_NCB5OR p23_like do 99.6 5E-15 1.1E-19 102.6 9.8 81 7-90 1-87 (87)
19 KOG2265 Nuclear distribution p 99.3 7.1E-12 1.5E-16 96.6 7.8 89 3-95 17-111 (179)
20 KOG1667 Zn2+-binding protein M 99.3 7.2E-12 1.6E-16 101.8 7.6 89 4-93 214-305 (320)
21 cd00298 ACD_sHsps_p23-like Thi 99.2 1.8E-10 4E-15 74.6 8.2 71 9-80 1-80 (80)
22 KOG3260 Calcyclin-binding prot 99.0 5.6E-10 1.2E-14 87.0 5.4 85 6-91 76-163 (224)
23 COG5091 SGT1 Suppressor of G2 98.5 4.1E-08 8.8E-13 81.2 2.3 112 6-118 178-309 (368)
24 KOG4379 Uncharacterized conser 98.2 2.4E-06 5.2E-11 74.7 6.5 89 1-94 286-379 (596)
25 COG0071 IbpA Molecular chapero 98.1 5.8E-05 1.3E-09 56.5 10.9 81 3-84 39-136 (146)
26 cd06472 ACD_ScHsp26_like Alpha 97.9 0.00018 3.9E-09 49.6 9.1 75 6-80 1-92 (92)
27 cd06471 ACD_LpsHSP_like Group 97.5 0.0013 2.9E-08 45.1 9.0 74 5-80 1-93 (93)
28 cd06464 ACD_sHsps-like Alpha-c 97.4 0.0015 3.2E-08 43.4 8.4 71 9-80 2-88 (88)
29 PF00011 HSP20: Hsp20/alpha cr 97.4 0.0037 8E-08 43.3 10.7 75 8-83 1-90 (102)
30 cd06497 ACD_alphaA-crystallin_ 96.4 0.038 8.3E-07 37.9 8.3 70 10-80 6-86 (86)
31 cd06526 metazoan_ACD Alpha-cry 96.4 0.028 6.1E-07 37.8 7.5 66 14-80 7-83 (83)
32 cd06498 ACD_alphaB-crystallin_ 96.3 0.044 9.5E-07 37.4 8.0 69 12-81 5-84 (84)
33 PRK10743 heat shock protein Ib 96.1 0.12 2.6E-06 38.5 10.4 75 5-82 35-125 (137)
34 cd06475 ACD_HspB1_like Alpha c 96.1 0.093 2E-06 35.9 8.9 70 8-78 4-84 (86)
35 cd06478 ACD_HspB4-5-6 Alpha-cr 96.0 0.071 1.5E-06 36.2 8.0 69 11-80 4-83 (83)
36 cd06479 ACD_HspB7_like Alpha c 95.9 0.062 1.3E-06 36.6 7.4 70 10-80 4-81 (81)
37 cd06470 ACD_IbpA-B_like Alpha- 95.9 0.18 3.9E-06 34.5 9.8 73 5-80 1-90 (90)
38 PRK11597 heat shock chaperone 95.6 0.29 6.2E-06 36.8 10.4 75 4-81 32-122 (142)
39 PF08190 PIH1: pre-RNA process 95.4 0.13 2.9E-06 42.5 9.1 64 12-79 259-327 (328)
40 cd06476 ACD_HspB2_like Alpha c 95.2 0.16 3.5E-06 34.6 7.4 68 12-80 5-83 (83)
41 cd06481 ACD_HspB9_like Alpha c 93.7 0.58 1.3E-05 32.0 7.6 65 13-78 6-85 (87)
42 cd06477 ACD_HspB3_Like Alpha c 91.2 2 4.3E-05 29.3 7.5 65 12-77 5-80 (83)
43 PF05455 GvpH: GvpH; InterPro 89.4 5.4 0.00012 31.2 9.4 73 7-83 94-170 (177)
44 cd06482 ACD_HspB10 Alpha cryst 88.4 4.6 0.0001 27.7 7.6 63 13-76 7-83 (87)
45 cd06480 ACD_HspB8_like Alpha-c 78.8 19 0.0004 25.0 7.4 66 12-78 13-89 (91)
46 KOG3247 Uncharacterized conser 56.2 6.5 0.00014 34.8 1.5 81 3-89 2-88 (466)
47 KOG0710 Molecular chaperone (s 46.6 63 0.0014 25.3 5.6 78 6-83 84-182 (196)
48 COG4856 Uncharacterized protei 44.9 98 0.0021 27.2 6.8 31 53-83 107-137 (403)
49 cd06526 metazoan_ACD Alpha-cry 43.4 46 0.00099 21.9 3.8 35 48-83 7-41 (83)
50 cd06464 ACD_sHsps-like Alpha-c 41.9 59 0.0013 20.7 4.1 37 47-84 6-42 (88)
51 PF06543 Lac_bphage_repr: Lact 40.2 8.3 0.00018 23.9 -0.2 10 101-110 17-26 (49)
52 PF01079 Hint: Hint module; I 35.3 2.3E+02 0.005 22.6 7.6 61 5-68 51-114 (217)
53 PF13670 PepSY_2: Peptidase pr 34.0 1.2E+02 0.0027 19.8 4.8 33 29-61 47-80 (83)
54 TIGR03066 Gem_osc_para_1 Gemma 30.7 1.5E+02 0.0032 21.4 5.0 43 26-80 34-76 (111)
55 cd02860 Pullulanase_N_term Pul 29.0 1.8E+02 0.004 19.5 6.0 48 8-55 14-67 (100)
56 KOG4105 6-pyruvoyl tetrahydrob 28.2 57 0.0012 24.0 2.4 21 46-66 44-64 (141)
57 PF11611 DUF4352: Domain of un 24.5 2.3E+02 0.0051 19.2 6.2 44 14-60 36-79 (123)
58 cd05845 Ig2_L1-CAM_like Second 23.4 2.5E+02 0.0053 19.4 4.9 45 4-55 33-79 (95)
59 cd05734 Ig7_DSCAM Seventh immu 23.4 2E+02 0.0043 18.0 5.0 11 4-14 12-22 (79)
60 KOG3591 Alpha crystallins [Pos 22.0 3.7E+02 0.0081 20.6 8.4 68 15-83 73-151 (173)
61 COG3533 Uncharacterized protei 21.2 4.5E+02 0.0098 24.3 7.2 54 3-56 371-433 (589)
No 1
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-37 Score=233.29 Aligned_cols=141 Identities=37% Similarity=0.669 Sum_probs=119.1
Q ss_pred CCCCCeEEEecCCEEEEEEEcCCCCCceEEEecccEEEEEEec-CCCceEEEEEeccccccCCCceEEecCCeEEEEEEe
Q 031955 2 SRHPEVLWAQRSDKVYLTISLPDAKDISVKCEPQGIFGFSAVG-VQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQK 80 (150)
Q Consensus 2 s~~P~v~WaQ~~~~V~ltV~l~d~kd~~V~~~~~~~l~f~~~~-~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K 80 (150)
.++|.|.||||.+.|||||.+.++++++|++++. .|+|+|++ ++++.|+++|+||+.|+|++|++++++|.|.++|+|
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved~~d~~v~~e~~-~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K 83 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVEDAKDVHVNLEPS-KLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRK 83 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEeccCccceeecccc-EEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEc
Confidence 3689999999999999999999999999999999 99999997 567899999999999999999999999999999999
Q ss_pred cCC-CcccceecccccCCCcceecCCccccCcccCCCCCCC----C----------CC---CcccccCCCCCCCCCccCc
Q 031955 81 EEK-GWWKRLLKSEEKPAPYIKVDWNKWCDEDDEGSNSDLA----S----------ND---DDAEHVGQNDESSDDEGML 142 (150)
Q Consensus 81 ~~~-~~W~rL~k~~~K~~~~lk~Dwdkw~deddee~~~~~~----~----------~~---~~~~~~~~~~~~~~~~~~~ 142 (150)
++. .+|||||+.+.|++ ||++||+||+||||+++..+.+ + .. +.++|++-++++++++
T Consensus 84 ~e~~~~WprLtkeK~K~h-wLkvDFdkW~Dededde~~~~~~~g~a~g~~~~~~mggmgg~~~~Df~~~~~~~~~~d--- 159 (180)
T KOG3158|consen 84 KELGEYWPRLTKEKAKLH-WLKVDFDKWVDEDEDDEAEDADGMGGAGGMDFSQMMGGMGGAEGVDFGVLEGDGADDD--- 159 (180)
T ss_pred cccccccchhhhcccccc-eEEcchhhccccccccchhhccccccccccchhhccccCCcccccccccccccccCCC---
Confidence 987 59999999999976 9999999999997554433221 1 11 1246666666666666
Q ss_pred CCCCcc
Q 031955 143 YLPDLE 148 (150)
Q Consensus 143 ~~~~~~ 148 (150)
+|||+
T Consensus 160 -~~d~e 164 (180)
T KOG3158|consen 160 -MPDSE 164 (180)
T ss_pred -CCCCC
Confidence 78876
No 2
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=100.00 E-value=3.1e-35 Score=211.25 Aligned_cols=105 Identities=30% Similarity=0.600 Sum_probs=98.7
Q ss_pred CCCeEEEecCCEEEEEEEcCCCCCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecCCeEEEEEEecCC
Q 031955 4 HPEVLWAQRSDKVYLTISLPDAKDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKEEK 83 (150)
Q Consensus 4 ~P~v~WaQ~~~~V~ltV~l~d~kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K~~~ 83 (150)
+|.+.||||.+.|+|||.++++++++|+|+++ +|+|+|.+.+|.+|.++|+||++|+|++|++++++|+|+|+|+|++.
T Consensus 1 ~p~v~WaQr~~~V~ltI~v~d~~d~~v~l~~~-~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 1 PAKTLWYDRRDYVFIEFCVEDSKDVKVDFEKS-KLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKE 79 (106)
T ss_pred CCcceeeECCCEEEEEEEeCCCCCcEEEEecC-EEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCC
Confidence 58999999999999999999999999999999 88999976567889999999999999999999999999999999986
Q ss_pred C-cccceecccccCCCcceecCCccccC
Q 031955 84 G-WWKRLLKSEEKPAPYIKVDWNKWCDE 110 (150)
Q Consensus 84 ~-~W~rL~k~~~K~~~~lk~Dwdkw~de 110 (150)
+ +||||++++.|++ ||++||+||+||
T Consensus 80 ~~~WprL~k~~~k~~-~lk~DfdkW~D~ 106 (106)
T cd00237 80 GVAWPRLTKEKAKPN-WLSVDFDNWRDW 106 (106)
T ss_pred CCCCchhhcCCCCCC-cEECcchhccCC
Confidence 5 9999999999965 999999999986
No 3
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.97 E-value=1.6e-30 Score=186.15 Aligned_cols=106 Identities=49% Similarity=0.830 Sum_probs=98.9
Q ss_pred CCeEEEecCCEEEEEEEcCCCCCceEEEecccEEEEEEecC-CCceEEEEEeccccccCCCceEEecCCeEEEEEEecC-
Q 031955 5 PEVLWAQRSDKVYLTISLPDAKDISVKCEPQGIFGFSAVGV-QGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKEE- 82 (150)
Q Consensus 5 P~v~WaQ~~~~V~ltV~l~d~kd~~V~~~~~~~l~f~~~~~-~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K~~- 82 (150)
|.|.||||.+.|+|+|++++++++.|.|+++ +|+|++.+. +++.|.++++||++|+|++|+|++.+++|+|+|+|+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~~~~~V~~~~~-~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~ 79 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDAKDPKIKLEPT-SLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA 79 (108)
T ss_pred CceeeeECCCEEEEEEEeCCCCCcEEEEECC-EEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence 7899999999999999999999999999999 889998763 4677999999999999999999999999999999999
Q ss_pred CCcccceecccccCCCcceecCCccccCcc
Q 031955 83 KGWWKRLLKSEEKPAPYIKVDWNKWCDEDD 112 (150)
Q Consensus 83 ~~~W~rL~k~~~K~~~~lk~Dwdkw~dedd 112 (150)
+++|+||++++.|++ |+++||+||.||||
T Consensus 80 ~~~W~~L~~~~~k~~-~~~~d~~~w~d~~~ 108 (108)
T cd06465 80 GEYWPRLTKEKGKLP-WLKVDFDKWVDEDE 108 (108)
T ss_pred CCCCcccccCCCCCC-ceECCchhcccCCC
Confidence 789999999999965 99999999999965
No 4
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.88 E-value=1.4e-22 Score=138.76 Aligned_cols=82 Identities=24% Similarity=0.374 Sum_probs=76.5
Q ss_pred EEEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecCCeEEEEEEecCCCc
Q 031955 8 LWAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKEEKGW 85 (150)
Q Consensus 8 ~WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K~~~~~ 85 (150)
+||||.+.|+|+|+++++ +++.|+|+++ +|+|++.+.++++|.++++||++|+|++|++++.+++|+|+|+|+++++
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~-~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~ 79 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKR-ELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIR 79 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCC-EEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCC
Confidence 599999999999999998 8999999999 8899987655678999999999999999999999999999999998889
Q ss_pred cccee
Q 031955 86 WKRLL 90 (150)
Q Consensus 86 W~rL~ 90 (150)
|+||+
T Consensus 80 W~~Le 84 (84)
T cd06489 80 WSKLE 84 (84)
T ss_pred CccCC
Confidence 99995
No 5
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.87 E-value=1.3e-21 Score=135.32 Aligned_cols=85 Identities=19% Similarity=0.284 Sum_probs=76.1
Q ss_pred CCeEEEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecCCeEEEEEEecC
Q 031955 5 PEVLWAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKEE 82 (150)
Q Consensus 5 P~v~WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K~~ 82 (150)
.|++||||++.|+|+|+++++ +++.|.++++ .++|++...++..|.+.++||++|+|+.|++++.+++|+|+|+|++
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~-~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~ 79 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANST-VLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAE 79 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCC-EEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCC
Confidence 479999999999999999865 6788999888 7788776445678999999999999999999999999999999999
Q ss_pred CCccccee
Q 031955 83 KGWWKRLL 90 (150)
Q Consensus 83 ~~~W~rL~ 90 (150)
+++||+|+
T Consensus 80 ~~~W~~Le 87 (87)
T cd06488 80 PGSWAKLE 87 (87)
T ss_pred CCcCccCC
Confidence 88999995
No 6
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.85 E-value=1.1e-20 Score=130.99 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=76.9
Q ss_pred CeEEEecCCEEEEEEEcCCC-----CCceEEEecccEEEEEEecCCCceEEEEEe-ccccccCCCceEEecCCeEEEEEE
Q 031955 6 EVLWAQRSDKVYLTISLPDA-----KDISVKCEPQGIFGFSAVGVQGELFDFSLE-LFGKTLPEKCKTKVGLRNIICSVQ 79 (150)
Q Consensus 6 ~v~WaQ~~~~V~ltV~l~d~-----kd~~V~~~~~~~l~f~~~~~~~~~y~~~le-Lf~~I~pe~S~~~i~~~kI~i~L~ 79 (150)
+|.|+||.+.|+|+|+++++ +++.|+|+++ +|.|++.+..|.+|.+.+. ||++|+|++|+|++.+++|+|+|+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~-~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~ 81 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTER-SFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA 81 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCC-EEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEE
Confidence 68999999999999999975 6789999998 8899887656788999997 999999999999999999999999
Q ss_pred ecCCCccccee
Q 031955 80 KEEKGWWKRLL 90 (150)
Q Consensus 80 K~~~~~W~rL~ 90 (150)
|+++++|++|+
T Consensus 82 K~~~~~W~~L~ 92 (92)
T cd06468 82 KKKEKKWESLT 92 (92)
T ss_pred eCCCCccCccC
Confidence 99989999995
No 7
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.84 E-value=5.6e-21 Score=161.49 Aligned_cols=106 Identities=24% Similarity=0.322 Sum_probs=89.6
Q ss_pred CCeEEEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecCCeEEEEEEecC
Q 031955 5 PEVLWAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKEE 82 (150)
Q Consensus 5 P~v~WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K~~ 82 (150)
+++.|||+.+.|+|+|+++++ .++.|+|+++ .|++++...++..|.+.+.||++|+|+.|++++.+++|+|+|+|++
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~-~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~~ 235 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQ-ILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKAE 235 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecC-EEEEEEecCCCcceeecccccccccccccEEEEecceEEEEEecCC
Confidence 689999999999999999986 6899999998 7788776545778999999999999999999999999999999999
Q ss_pred CCcccceecccccC--C-----------------CcceecCCccccCc
Q 031955 83 KGWWKRLLKSEEKP--A-----------------PYIKVDWNKWCDED 111 (150)
Q Consensus 83 ~~~W~rL~k~~~K~--~-----------------~~lk~Dwdkw~ded 111 (150)
+..|++|+...... . .--++||+|+..+.
T Consensus 236 ~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~dWdk~~~~~ 283 (356)
T PLN03088 236 PITWASLEYGKGPAVLPKPNVSSEVSQRPAYPSSKKKKDDWDKLEAEV 283 (356)
T ss_pred CCCccccccCCccccccCCCCCcCcccCCCCCCCCCCCCChhhhhhhh
Confidence 88999999764321 0 01257999997653
No 8
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.83 E-value=3.8e-20 Score=125.52 Aligned_cols=82 Identities=28% Similarity=0.434 Sum_probs=75.0
Q ss_pred EEEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecCCeEEEEEEecCCCc
Q 031955 8 LWAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKEEKGW 85 (150)
Q Consensus 8 ~WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K~~~~~ 85 (150)
+|+||.+.|+|+|+++++ +++.|.++++ +|.|++....++.|.++++||++|+|++|+|++.+++|+|+|+|+.+++
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~-~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~ 79 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQ-SLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGS 79 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecC-EEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCC
Confidence 599999999999999997 7899999998 7888877533578999999999999999999999999999999999899
Q ss_pred cccee
Q 031955 86 WKRLL 90 (150)
Q Consensus 86 W~rL~ 90 (150)
||||+
T Consensus 80 W~~L~ 84 (84)
T cd06466 80 WPSLE 84 (84)
T ss_pred CccCC
Confidence 99985
No 9
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.77 E-value=7.7e-18 Score=111.80 Aligned_cols=75 Identities=27% Similarity=0.380 Sum_probs=67.0
Q ss_pred CCeEEEecCCEEEEEEEcCCC----CCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecCCeEEEEEEe
Q 031955 5 PEVLWAQRSDKVYLTISLPDA----KDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQK 80 (150)
Q Consensus 5 P~v~WaQ~~~~V~ltV~l~d~----kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K 80 (150)
|+|.|+||.+.|+|+|.+++. +++.|+|+++ +|.|++...+++.|.++++||++|+|++|+|++.+++|+|+|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~-~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDT-SLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETT-EEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEee-EEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 899999999999999999654 7999999999 88999875455899999999999999999999999999999998
No 10
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.76 E-value=5.3e-18 Score=113.26 Aligned_cols=81 Identities=38% Similarity=0.599 Sum_probs=74.6
Q ss_pred EEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecCCeEEEEEEecCC-Cc
Q 031955 9 WAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKEEK-GW 85 (150)
Q Consensus 9 WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K~~~-~~ 85 (150)
|+|+.+.|+|+|.++++ +++.|.++++ .|+|++.+..+..|.++++||++|+|++|+|++.+++|+|+|+|+.+ .+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~-~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~ 79 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPK-SLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEW 79 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecC-EEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCC
Confidence 99999999999999997 8999999988 78998875336789999999999999999999999999999999998 69
Q ss_pred cccee
Q 031955 86 WKRLL 90 (150)
Q Consensus 86 W~rL~ 90 (150)
|++|+
T Consensus 80 W~~l~ 84 (84)
T cd06463 80 WPRLE 84 (84)
T ss_pred CcccC
Confidence 99985
No 11
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.76 E-value=5.2e-18 Score=113.79 Aligned_cols=76 Identities=24% Similarity=0.478 Sum_probs=66.6
Q ss_pred EEecCCEEEEEEEcCCCC--CceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecCCeEEEEEEecCCCcc
Q 031955 9 WAQRSDKVYLTISLPDAK--DISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKEEKGWW 86 (150)
Q Consensus 9 WaQ~~~~V~ltV~l~d~k--d~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K~~~~~W 86 (150)
|+||.+.|+|+|.+++++ ++.|.++++ .|.+++ .+|.+.++||++|+|++|++++.+++|+|+|.|+++++|
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~-~l~i~~-----~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W 74 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDL-YLKVNF-----PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIW 74 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecC-EEEEcC-----CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCcc
Confidence 999999999999999975 566667766 555543 569999999999999999999999999999999998999
Q ss_pred ccee
Q 031955 87 KRLL 90 (150)
Q Consensus 87 ~rL~ 90 (150)
+||.
T Consensus 75 ~~L~ 78 (78)
T cd06469 75 EALC 78 (78)
T ss_pred cccC
Confidence 9984
No 12
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.75 E-value=8.9e-18 Score=114.34 Aligned_cols=80 Identities=25% Similarity=0.458 Sum_probs=71.7
Q ss_pred eEEEecCCEEEEEEEcCCC---CCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecC-CeEEEEEEecC
Q 031955 7 VLWAQRSDKVYLTISLPDA---KDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGL-RNIICSVQKEE 82 (150)
Q Consensus 7 v~WaQ~~~~V~ltV~l~d~---kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~-~kI~i~L~K~~ 82 (150)
|.|+||.+.|+|+|.+++. +++.|+++++ +|+|++. +..+.+.+.||++|+|++|+|++.+ ++|+|+|+|++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~-~l~v~~~---~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~ 76 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPK-HLKVGVK---GGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRN 76 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcC-EEEEEEC---CCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECC
Confidence 6899999999999999864 8999999998 7788874 3457789999999999999999999 99999999999
Q ss_pred C-Cccccee
Q 031955 83 K-GWWKRLL 90 (150)
Q Consensus 83 ~-~~W~rL~ 90 (150)
+ .+|++|.
T Consensus 77 ~~~~W~~L~ 85 (85)
T cd06467 77 EGEWWPSLV 85 (85)
T ss_pred CCccccccC
Confidence 8 5999984
No 13
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=99.75 E-value=1.8e-18 Score=133.71 Aligned_cols=114 Identities=22% Similarity=0.353 Sum_probs=95.3
Q ss_pred CCCeEEEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecCCeEEEEEEec
Q 031955 4 HPEVLWAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKE 81 (150)
Q Consensus 4 ~P~v~WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K~ 81 (150)
.++++|||+...|+|||+.+++ +++.|.|+.+ .|++.+....|..|.+.+.||++|+|+.|++++.+.+|+|+|.|.
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~-~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISEN-TLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecc-eEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence 5799999999999999999997 5788888877 677777766788999999999999999999999999999999998
Q ss_pred CCCcccceecccc---------------cCCCcceecCCccccCcccCCCCC
Q 031955 82 EKGWWKRLLKSEE---------------KPAPYIKVDWNKWCDEDDEGSNSD 118 (150)
Q Consensus 82 ~~~~W~rL~k~~~---------------K~~~~lk~Dwdkw~deddee~~~~ 118 (150)
+...|..|+++++ .|..-.+.||++...|.+.+++.+
T Consensus 82 ~~irW~~Le~g~~~~~~~~~~vs~~~s~~Pssk~~kdWdkl~~e~~~eEe~e 133 (196)
T KOG1309|consen 82 EIIRWESLEKGKGSAVAPKPNVSSTASSYPSSKPAKDWDKLEKEEKKEEEDE 133 (196)
T ss_pred cchhhhhhhcccCcccccccccccccccCCCCCcccCHHHHHHHhhhhhhcc
Confidence 8889999996442 111234899999998866554444
No 14
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.74 E-value=2.4e-17 Score=113.30 Aligned_cols=80 Identities=24% Similarity=0.398 Sum_probs=68.2
Q ss_pred eEEEecCCEEEEEEEcC-CC--CCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEec-CCeEEEEEEecC
Q 031955 7 VLWAQRSDKVYLTISLP-DA--KDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVG-LRNIICSVQKEE 82 (150)
Q Consensus 7 v~WaQ~~~~V~ltV~l~-d~--kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~-~~kI~i~L~K~~ 82 (150)
|.|+||.+.|+|+|.+| ++ ++++|+|+++ +|.+.+. +....++++||++|+|++|+|++. +++|+|+|.|++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~-~l~v~~~---~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~ 76 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPD-HISIALK---DQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKD 76 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecC-EEEEEeC---CCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEECC
Confidence 68999999999999997 43 8999999999 7788763 223348889999999999999986 567999999998
Q ss_pred CC-ccccee
Q 031955 83 KG-WWKRLL 90 (150)
Q Consensus 83 ~~-~W~rL~ 90 (150)
++ +||+|.
T Consensus 77 ~~~~W~~L~ 85 (85)
T cd06493 77 EGPTWPELV 85 (85)
T ss_pred CCccccccC
Confidence 76 999984
No 15
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.69 E-value=1.9e-16 Score=109.85 Aligned_cols=80 Identities=21% Similarity=0.349 Sum_probs=70.1
Q ss_pred eEEEecCCEEEEEEEcCC-----CCCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecC-CeEEEEEEe
Q 031955 7 VLWAQRSDKVYLTISLPD-----AKDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGL-RNIICSVQK 80 (150)
Q Consensus 7 v~WaQ~~~~V~ltV~l~d-----~kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~-~kI~i~L~K 80 (150)
|.|.||.+.|+|+|.++. +++++|+++++ +|++... |+.+.++++||++|+|++|+|++.+ +.|.|+|.|
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~-~l~v~~~---g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K 76 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRK-HLKVGLK---GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEK 76 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecC-EEEEEEC---CCceEEeCcccCcccccccEEEEeCCCEEEEEEEE
Confidence 679999999999999953 58999999999 7788764 5567799999999999999999986 579999999
Q ss_pred cCCC-ccccee
Q 031955 81 EEKG-WWKRLL 90 (150)
Q Consensus 81 ~~~~-~W~rL~ 90 (150)
...+ |||+|+
T Consensus 77 ~~~~~wW~~l~ 87 (87)
T cd06492 77 INKMEWWSRLV 87 (87)
T ss_pred CCCCccccccC
Confidence 9765 999985
No 16
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.69 E-value=4.5e-16 Score=111.15 Aligned_cols=92 Identities=22% Similarity=0.336 Sum_probs=78.3
Q ss_pred CCCCeEEEecCCEEEEEEEcCC----CCCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecC-CeEEEE
Q 031955 3 RHPEVLWAQRSDKVYLTISLPD----AKDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGL-RNIICS 77 (150)
Q Consensus 3 ~~P~v~WaQ~~~~V~ltV~l~d----~kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~-~kI~i~ 77 (150)
.++.|.|.||.+.|.|+|.+|. +++++|+|+++ +|.+..++.++..-.++.+||++|++++|+|++.+ ..|.|+
T Consensus 3 ~~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~-~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~ 81 (102)
T cd06495 3 VRENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSS-SIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLS 81 (102)
T ss_pred cCCceEEEeECCeEEEEEECCCCCccceEEEEEEEcC-EEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEE
Confidence 4689999999999999999995 37999999999 88988864233333599999999999999999987 458999
Q ss_pred EEecCCCcccceeccccc
Q 031955 78 VQKEEKGWWKRLLKSEEK 95 (150)
Q Consensus 78 L~K~~~~~W~rL~k~~~K 95 (150)
|.|....||++|.+++.+
T Consensus 82 L~K~~~~wW~~v~~g~~~ 99 (102)
T cd06495 82 LSKCSEVWWNAVLKGEEE 99 (102)
T ss_pred EEECCCcccchhhCCCCc
Confidence 999987799999997654
No 17
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.67 E-value=7.1e-16 Score=108.38 Aligned_cols=83 Identities=25% Similarity=0.488 Sum_probs=72.6
Q ss_pred CCCCeEEEecCCEEEEEEEcCC---CCCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecCCe-EEEEE
Q 031955 3 RHPEVLWAQRSDKVYLTISLPD---AKDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGLRN-IICSV 78 (150)
Q Consensus 3 ~~P~v~WaQ~~~~V~ltV~l~d---~kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~~k-I~i~L 78 (150)
.++.|.|+||.+.|+|+|.++. ++++.|.|+++ +|.+.+. |.. .++++||++|+|++|+|++.+++ ++|.|
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~-~l~V~~~---g~~-~l~G~L~~~I~~destWtled~k~l~I~L 78 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSR-DISLAVK---GQE-VLKGKLFDSVVADECTWTLEDRKLIRIVL 78 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcC-EEEEEEC---CEE-EEcCcccCccCcccCEEEEECCcEEEEEE
Confidence 4689999999999999999985 47999999999 7788873 455 68889999999999999999988 69999
Q ss_pred EecCCC---ccccee
Q 031955 79 QKEEKG---WWKRLL 90 (150)
Q Consensus 79 ~K~~~~---~W~rL~ 90 (150)
.|.+.. +|++|+
T Consensus 79 ~K~~~~~~~~W~sl~ 93 (93)
T cd06494 79 TKSNRDAGNCWKSLL 93 (93)
T ss_pred EeCCCCCCccccccC
Confidence 999744 999874
No 18
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.62 E-value=5e-15 Score=102.57 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=65.3
Q ss_pred eEEEecCCEEEEEEEcCC--CCCce--EEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEec--CCeEEEEEEe
Q 031955 7 VLWAQRSDKVYLTISLPD--AKDIS--VKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVG--LRNIICSVQK 80 (150)
Q Consensus 7 v~WaQ~~~~V~ltV~l~d--~kd~~--V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~--~~kI~i~L~K 80 (150)
++|||+.+.|+|+|+.+. ..+.. +.++.+ .|+++..- .+..|.++++||++|+|+. ++++. ++||||+|+|
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~-~l~v~~~~-~~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K 77 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQR-ELRVEIIL-GDKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKK 77 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCC-EEEEEEEC-CCceEEEeeeccccCCCCc-EEEEcccCceEEEEEEc
Confidence 589999999999999884 34444 555665 66777653 3777999999999998764 88887 5699999999
Q ss_pred cCCCccccee
Q 031955 81 EEKGWWKRLL 90 (150)
Q Consensus 81 ~~~~~W~rL~ 90 (150)
+++..|++|.
T Consensus 78 ~e~~~W~~Lg 87 (87)
T cd06490 78 KEPEKWTSLG 87 (87)
T ss_pred CCCCccccCc
Confidence 9999999983
No 19
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.31 E-value=7.1e-12 Score=96.65 Aligned_cols=89 Identities=19% Similarity=0.351 Sum_probs=73.0
Q ss_pred CCCCeEEEecCCEEEEEEEcCC----CCCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecCCeEEEEE
Q 031955 3 RHPEVLWAQRSDKVYLTISLPD----AKDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGLRNIICSV 78 (150)
Q Consensus 3 ~~P~v~WaQ~~~~V~ltV~l~d----~kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L 78 (150)
-.+.|.|+||-..|.|.|.++. ++++.|.+..+ +|.++. .|++-.++++||++|++++|.|+|.++++.+++
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~-hI~V~~---kg~~~ildG~L~~~vk~des~WtiEd~k~i~i~ 92 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSK-HIKVGL---KGQPPILDGELSHSVKVDESTWTIEDGKMIVIL 92 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeee-EEEEec---CCCCceecCccccccccccceEEecCCEEEEEE
Confidence 3579999999999999999984 46899999888 777765 456667999999999999999999987765555
Q ss_pred EecCC--Ccccceeccccc
Q 031955 79 QKEEK--GWWKRLLKSEEK 95 (150)
Q Consensus 79 ~K~~~--~~W~rL~k~~~K 95 (150)
.|+.. .||.||+.+...
T Consensus 93 l~K~~~~eWW~~ll~gep~ 111 (179)
T KOG2265|consen 93 LKKSNKMEWWDSLLEGEPE 111 (179)
T ss_pred eeccchHHHHHHHHcCCCC
Confidence 55544 499999997754
No 20
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.30 E-value=7.2e-12 Score=101.81 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=74.5
Q ss_pred CCCeEEEecCCEEEEEEEcCCCCC--ceEEEecccEEEEEEec-CCCceEEEEEeccccccCCCceEEecCCeEEEEEEe
Q 031955 4 HPEVLWAQRSDKVYLTISLPDAKD--ISVKCEPQGIFGFSAVG-VQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQK 80 (150)
Q Consensus 4 ~P~v~WaQ~~~~V~ltV~l~d~kd--~~V~~~~~~~l~f~~~~-~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K 80 (150)
..|++|.||...|+|+|+.+.+-. ..|+.++. .|.++++- ..+..|.++++|++.|++++|.+.+++++|+|+|+|
T Consensus 214 ~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~-~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~k 292 (320)
T KOG1667|consen 214 KCRHDWHQTNGFVTINVYAKGALPETSNIEANGT-TLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLKK 292 (320)
T ss_pred cchhhhhhcCCeEEEEEEeccCCcccceeeeCCe-EEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEec
Confidence 468999999999999999998754 34555544 56666653 234689999999999999999999999999999999
Q ss_pred cCCCcccceeccc
Q 031955 81 EEKGWWKRLLKSE 93 (150)
Q Consensus 81 ~~~~~W~rL~k~~ 93 (150)
++++.|+||....
T Consensus 293 ~ep~sWa~Le~p~ 305 (320)
T KOG1667|consen 293 AEPGSWARLEFPP 305 (320)
T ss_pred cCCCCcccccCCH
Confidence 9999999999743
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.18 E-value=1.8e-10 Score=74.62 Aligned_cols=71 Identities=30% Similarity=0.403 Sum_probs=63.8
Q ss_pred EEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecC-------CCceEEEEEeccccccCCCceEEecCCeEEEEEE
Q 031955 9 WAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGV-------QGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQ 79 (150)
Q Consensus 9 WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~-------~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~ 79 (150)
|+|+.+.++|+|.+++. +++.|.++++ .|.|++... ....|.+.+.|+++|+|+++++++.++.++|+|.
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~-~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~ 79 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDN-VLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLP 79 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEc
Confidence 89999999999999997 7899999987 889988742 1468999999999999999999999999999998
Q ss_pred e
Q 031955 80 K 80 (150)
Q Consensus 80 K 80 (150)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 22
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=99.00 E-value=5.6e-10 Score=86.96 Aligned_cols=85 Identities=21% Similarity=0.344 Sum_probs=77.4
Q ss_pred CeEEEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCCCceEEEEEe-ccccccCCCceEEecCCeEEEEEEecC
Q 031955 6 EVLWAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQGELFDFSLE-LFGKTLPEKCKTKVGLRNIICSVQKEE 82 (150)
Q Consensus 6 ~v~WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~~~~y~~~le-Lf~~I~pe~S~~~i~~~kI~i~L~K~~ 82 (150)
-|-|.|+...|.+.|.|.++ .+++|.|+|. +|.+.+...+|+.|.+.+. |.++|.||.|+.++....|.|.++|.+
T Consensus 76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~-Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe 154 (224)
T KOG3260|consen 76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTPM-SLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVE 154 (224)
T ss_pred hcCccccCCeeEEEEEeecccccceeEEeccc-ceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhh
Confidence 37899999999999999987 6899999999 7788887778999999996 999999999999999999999999988
Q ss_pred CCcccceec
Q 031955 83 KGWWKRLLK 91 (150)
Q Consensus 83 ~~~W~rL~k 91 (150)
..+|.-|+.
T Consensus 155 ~~rwd~Lt~ 163 (224)
T KOG3260|consen 155 NTRWDYLTQ 163 (224)
T ss_pred cccchHHHH
Confidence 889999984
No 23
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=98.53 E-value=4.1e-08 Score=81.21 Aligned_cols=112 Identities=20% Similarity=0.228 Sum_probs=85.0
Q ss_pred CeEEEecCCEEEEEEEcCCCCCc--eEEEecccEEEEEEecCC-CceEEEEEeccccccCCCceEEecCCeEEEEEEecC
Q 031955 6 EVLWAQRSDKVYLTISLPDAKDI--SVKCEPQGIFGFSAVGVQ-GELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKEE 82 (150)
Q Consensus 6 ~v~WaQ~~~~V~ltV~l~d~kd~--~V~~~~~~~l~f~~~~~~-~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K~~ 82 (150)
+++|+||+.++.|-|+.+.+.+. .+-++++ +|.++.+... +-.+.+.+.||++|.|+.+.+++.+.++++.|+|.+
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~N-TL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~ 256 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLEGN-TLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKVE 256 (368)
T ss_pred eeeccccceeEEEEEecCCCCccccceeecCC-cceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhhh
Confidence 57788888888888888877654 4555777 6788776433 345677888999999999999999989999999998
Q ss_pred CCcccceecccc----------c------C-CCcceecCCccccCcccCCCCC
Q 031955 83 KGWWKRLLKSEE----------K------P-APYIKVDWNKWCDEDDEGSNSD 118 (150)
Q Consensus 83 ~~~W~rL~k~~~----------K------~-~~~lk~Dwdkw~deddee~~~~ 118 (150)
...|..|.+... + | ....+.||++...+++-+++.+
T Consensus 257 ~v~W~~l~~~pa~~S~~l~~e~~N~~SAt~~s~~k~~Dw~~l~~~~~~dEe~p 309 (368)
T COG5091 257 MVRWGGLNGRPADESSRLSDEGKNSDSATPKSSKKQDDWKELMVEDSGDEENP 309 (368)
T ss_pred hhhhcccccCccccccccccccccccccCCccccccccHHHhhhhhcccccCc
Confidence 889999986431 1 0 1247899999998866555554
No 24
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=98.24 E-value=2.4e-06 Score=74.66 Aligned_cols=89 Identities=20% Similarity=0.327 Sum_probs=72.5
Q ss_pred CCCCCCeEEEecCCEEEEEEEcCC---CCCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecC-CeEEE
Q 031955 1 MSRHPEVLWAQRSDKVYLTISLPD---AKDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGL-RNIIC 76 (150)
Q Consensus 1 Ms~~P~v~WaQ~~~~V~ltV~l~d---~kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~-~kI~i 76 (150)
|-.+|.|.|.|+.+.+.+++.++. ++++.|.+.++ ++.+. .+-.-.++.+||+.|.-|.|.+.|.. .++++
T Consensus 286 ~~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~-~v~v~----~~dh~~~~g~lyasv~he~s~~ii~ean~Le~ 360 (596)
T KOG4379|consen 286 NGGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKT-TVVVK----HLDHVIFDGELYASVGHELSAFIIAEANGLEL 360 (596)
T ss_pred ccCCccceeeeccCcceEEEecccccccceEEEEecCc-eEEEE----eeeeEEeccchhhhccccchhhhhhhhccceE
Confidence 457899999999999999999995 36777888877 53333 23344588999999999999999875 99999
Q ss_pred EEEecCCC-cccceecccc
Q 031955 77 SVQKEEKG-WWKRLLKSEE 94 (150)
Q Consensus 77 ~L~K~~~~-~W~rL~k~~~ 94 (150)
.|.|++.. .||||..+++
T Consensus 361 sl~K~de~~twprL~~~dk 379 (596)
T KOG4379|consen 361 SLTKADEIQTWPRLFAQDK 379 (596)
T ss_pred EEeecccccccchheeecc
Confidence 99999765 8999997654
No 25
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=5.8e-05 Score=56.49 Aligned_cols=81 Identities=22% Similarity=0.239 Sum_probs=69.3
Q ss_pred CCCCeEEEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCC---------------CceEEEEEeccccccCCCc
Q 031955 3 RHPEVLWAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQ---------------GELFDFSLELFGKTLPEKC 65 (150)
Q Consensus 3 ~~P~v~WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~---------------~~~y~~~leLf~~I~pe~S 65 (150)
..|.|..+++.+.+.|++.||++ +++.|.++.+ .|++++.... ...|+-.+.|-..|+|+..
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~-~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGN-TLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECC-EEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 46999999999999999999997 5788888888 7888887422 2468888999999999988
Q ss_pred eEEecCCeEEEEEEecCCC
Q 031955 66 KTKVGLRNIICSVQKEEKG 84 (150)
Q Consensus 66 ~~~i~~~kI~i~L~K~~~~ 84 (150)
+.+..++-+.|+|.|..+.
T Consensus 118 ~A~~~nGvL~I~lpk~~~~ 136 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPE 136 (146)
T ss_pred eeEeeCcEEEEEEeccccc
Confidence 8889999999999998763
No 26
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=97.88 E-value=0.00018 Score=49.64 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=60.9
Q ss_pred CeEEEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCC---------------CceEEEEEeccccccCCCceEE
Q 031955 6 EVLWAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQ---------------GELFDFSLELFGKTLPEKCKTK 68 (150)
Q Consensus 6 ~v~WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~---------------~~~y~~~leLf~~I~pe~S~~~ 68 (150)
++.|+++.+.+.|++.||++ +++.|.+..++.|++++.... ...|.-.+.|-..|+++..+.+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 57899999999999999997 477788765447888875310 1267778899999999988888
Q ss_pred ecCCeEEEEEEe
Q 031955 69 VGLRNIICSVQK 80 (150)
Q Consensus 69 i~~~kI~i~L~K 80 (150)
+.++-+.|+|.|
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999976
No 27
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.50 E-value=0.0013 Score=45.13 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=57.5
Q ss_pred CCeEEEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCC--------C---------ceEEEEEeccccccCCCc
Q 031955 5 PEVLWAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQ--------G---------ELFDFSLELFGKTLPEKC 65 (150)
Q Consensus 5 P~v~WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~--------~---------~~y~~~leLf~~I~pe~S 65 (150)
|++.++++.+.+.|.+.||++ ++++|.+..+ .|++++.... + ..|.-.+.|- .|+++..
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 578999999999999999997 5788888776 7888776321 0 1244556664 7888888
Q ss_pred eEEecCCeEEEEEEe
Q 031955 66 KTKVGLRNIICSVQK 80 (150)
Q Consensus 66 ~~~i~~~kI~i~L~K 80 (150)
+.++.++-+.|+|.|
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 888999999999876
No 28
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.45 E-value=0.0015 Score=43.44 Aligned_cols=71 Identities=21% Similarity=0.225 Sum_probs=59.4
Q ss_pred EEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCC--------------CceEEEEEeccccccCCCceEEecCC
Q 031955 9 WAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQ--------------GELFDFSLELFGKTLPEKCKTKVGLR 72 (150)
Q Consensus 9 WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~--------------~~~y~~~leLf~~I~pe~S~~~i~~~ 72 (150)
++++.+.+.|.|.+|++ +++.|.+..+ .|.+++.... ...|.-.+.|-..|+++..+.++.++
T Consensus 2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~~-~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 2 VYETDDAYVVEADLPGFKKEDIKVEVEDG-VLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred cEEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 67889999999999997 5788888876 7788876321 35688999999999999999999999
Q ss_pred eEEEEEEe
Q 031955 73 NIICSVQK 80 (150)
Q Consensus 73 kI~i~L~K 80 (150)
.+.|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99999875
No 29
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.44 E-value=0.0037 Score=43.30 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=59.1
Q ss_pred EEEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecC---C----------CceEEEEEeccccccCCCceEEecCC
Q 031955 8 LWAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGV---Q----------GELFDFSLELFGKTLPEKCKTKVGLR 72 (150)
Q Consensus 8 ~WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~---~----------~~~y~~~leLf~~I~pe~S~~~i~~~ 72 (150)
+|.++.+.+.|.+.+++. ++++|++..+ .|.+++... . ...|.-.+.|-..|+++.-+.++.++
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~G 79 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENG 79 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTS
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCC
Confidence 588999999999999986 5788888877 788887642 1 13577788899999999989999999
Q ss_pred eEEEEEEecCC
Q 031955 73 NIICSVQKEEK 83 (150)
Q Consensus 73 kI~i~L~K~~~ 83 (150)
.+.|++.|...
T Consensus 80 vL~I~~pk~~~ 90 (102)
T PF00011_consen 80 VLTITIPKKEE 90 (102)
T ss_dssp EEEEEEEBSSS
T ss_pred EEEEEEEcccc
Confidence 99999999865
No 30
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=96.40 E-value=0.038 Score=37.86 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=56.2
Q ss_pred EecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCC---C-----ceEEEEEeccccccCCCceEEe-cCCeEEEEE
Q 031955 10 AQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQ---G-----ELFDFSLELFGKTLPEKCKTKV-GLRNIICSV 78 (150)
Q Consensus 10 aQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~---~-----~~y~~~leLf~~I~pe~S~~~i-~~~kI~i~L 78 (150)
+.+.+.+.|++.+|+. +++.|++..+ .|++++.... + ++|.-.+.|-..|++++-+.++ .++.+.|+|
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 84 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDD-YVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSG 84 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEe
Confidence 4678899999999997 4788888877 8899886311 1 3466678899999999999998 689999998
Q ss_pred Ee
Q 031955 79 QK 80 (150)
Q Consensus 79 ~K 80 (150)
.|
T Consensus 85 PK 86 (86)
T cd06497 85 PK 86 (86)
T ss_pred cC
Confidence 76
No 31
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=96.37 E-value=0.028 Score=37.85 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=54.0
Q ss_pred CEEEEEEEcCCC--CCceEEEecccEEEEEEecCC--------CceEEEEEeccccccCCCceEEecC-CeEEEEEEe
Q 031955 14 DKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQ--------GELFDFSLELFGKTLPEKCKTKVGL-RNIICSVQK 80 (150)
Q Consensus 14 ~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~--------~~~y~~~leLf~~I~pe~S~~~i~~-~kI~i~L~K 80 (150)
+.+.|++.||+. ++++|.+..+ .|++++.... ...|.-.+.|-..|+++..+.++.. +.+.|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~-~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDN-KLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECC-EEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 578999999997 5788888876 8899887321 1368888999999999998999987 889998875
No 32
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=96.27 E-value=0.044 Score=37.43 Aligned_cols=69 Identities=10% Similarity=0.143 Sum_probs=55.6
Q ss_pred cCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCC-----C---ceEEEEEeccccccCCCceEEec-CCeEEEEEEe
Q 031955 12 RSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQ-----G---ELFDFSLELFGKTLPEKCKTKVG-LRNIICSVQK 80 (150)
Q Consensus 12 ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~-----~---~~y~~~leLf~~I~pe~S~~~i~-~~kI~i~L~K 80 (150)
+.+...|++.+|+. +++.|++..+ .|++++.... + .+|.=.+.|-..|++++-+.++. ++.+.|+|.|
T Consensus 5 ~~~~~~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 5 EKDKFSVNLDVKHFSPEELKVKVLGD-FIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred CCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 56789999999997 5788888877 8899886311 1 24777788999999999999995 8999999987
Q ss_pred c
Q 031955 81 E 81 (150)
Q Consensus 81 ~ 81 (150)
+
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 4
No 33
>PRK10743 heat shock protein IbpA; Provisional
Probab=96.13 E-value=0.12 Score=38.55 Aligned_cols=75 Identities=5% Similarity=0.090 Sum_probs=59.8
Q ss_pred CCeEEEe-cCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCC---C----------ceEEEEEeccccccCCCceEE
Q 031955 5 PEVLWAQ-RSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQ---G----------ELFDFSLELFGKTLPEKCKTK 68 (150)
Q Consensus 5 P~v~WaQ-~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~---~----------~~y~~~leLf~~I~pe~S~~~ 68 (150)
|.+.-++ +.+.+.|++.||++ +++.|.++.+ .|++++.... + ..|.-.+.|-..|++++ .+
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~-~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~ 111 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDN-LLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--AN 111 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CE
Confidence 7889985 89999999999997 4788888876 8899886311 1 24666788999999983 77
Q ss_pred ecCCeEEEEEEecC
Q 031955 69 VGLRNIICSVQKEE 82 (150)
Q Consensus 69 i~~~kI~i~L~K~~ 82 (150)
..++-+.|+|.|..
T Consensus 112 ~~dGVL~I~lPK~~ 125 (137)
T PRK10743 112 LVNGLLYIDLERVI 125 (137)
T ss_pred EeCCEEEEEEeCCC
Confidence 78899999999963
No 34
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=96.07 E-value=0.093 Score=35.91 Aligned_cols=70 Identities=10% Similarity=0.100 Sum_probs=56.8
Q ss_pred EEEecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecCC----C----ceEEEEEeccccccCCCceEEec-CCeEEE
Q 031955 8 LWAQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGVQ----G----ELFDFSLELFGKTLPEKCKTKVG-LRNIIC 76 (150)
Q Consensus 8 ~WaQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~~----~----~~y~~~leLf~~I~pe~S~~~i~-~~kI~i 76 (150)
.++.+.+.+.|++.+|+. ++++|++..+ .|++++.... + ..|.-.+.|-..|++++.+-++. ++-+.|
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDG-VVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECC-EEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 578899999999999997 4788888777 8899887421 1 34777788999999999999887 888888
Q ss_pred EE
Q 031955 77 SV 78 (150)
Q Consensus 77 ~L 78 (150)
+|
T Consensus 83 ~l 84 (86)
T cd06475 83 EA 84 (86)
T ss_pred Ee
Confidence 76
No 35
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=95.99 E-value=0.071 Score=36.19 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=54.6
Q ss_pred ecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecC---CC-----ceEEEEEeccccccCCCceEEe-cCCeEEEEEE
Q 031955 11 QRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGV---QG-----ELFDFSLELFGKTLPEKCKTKV-GLRNIICSVQ 79 (150)
Q Consensus 11 Q~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~---~~-----~~y~~~leLf~~I~pe~S~~~i-~~~kI~i~L~ 79 (150)
.+.+.+.|++.+|+. ++++|++..+ .|++++... .+ ++|.-.+.|-..|+++.-+.++ .++.+.|++.
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGD-FVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECC-EEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence 467889999999987 5788888877 888888631 11 3477778899999999888888 4888999887
Q ss_pred e
Q 031955 80 K 80 (150)
Q Consensus 80 K 80 (150)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 6
No 36
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=95.93 E-value=0.062 Score=36.61 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=56.0
Q ss_pred EecCCEEEEEEEcCCC--CCceEEEecccEEEEEEec--CCC---ceEEEEEeccccccCCCceEEe-cCCeEEEEEEe
Q 031955 10 AQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVG--VQG---ELFDFSLELFGKTLPEKCKTKV-GLRNIICSVQK 80 (150)
Q Consensus 10 aQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~--~~~---~~y~~~leLf~~I~pe~S~~~i-~~~kI~i~L~K 80 (150)
+.+.+.+.|++.+|+. +++.|++..+ .|++++.. ..+ ..|.=.+.|-..|+++.-+.++ ..+.+.|++.+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~-~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNN-QIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 3567889999999987 5788888877 88888763 122 3577778899999999999997 78889998864
No 37
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=95.92 E-value=0.18 Score=34.52 Aligned_cols=73 Identities=10% Similarity=0.179 Sum_probs=53.9
Q ss_pred CCeEEEecC-CEEEEEEEcCCCC--CceEEEecccEEEEEEecCC--------------CceEEEEEeccccccCCCceE
Q 031955 5 PEVLWAQRS-DKVYLTISLPDAK--DISVKCEPQGIFGFSAVGVQ--------------GELFDFSLELFGKTLPEKCKT 67 (150)
Q Consensus 5 P~v~WaQ~~-~~V~ltV~l~d~k--d~~V~~~~~~~l~f~~~~~~--------------~~~y~~~leLf~~I~pe~S~~ 67 (150)
|.+.=.++. +...|++.||+++ ++.|.+..+ .|++++.... -..|.-.+.|-..|+++ +.
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~-~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENN-QLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECC-EEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--ee
Confidence 456666775 8999999999985 677777766 7888875310 13477778888888875 67
Q ss_pred EecCCeEEEEEEe
Q 031955 68 KVGLRNIICSVQK 80 (150)
Q Consensus 68 ~i~~~kI~i~L~K 80 (150)
+..++.+.|+|.+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 7788888888853
No 38
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=95.56 E-value=0.29 Score=36.85 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=58.8
Q ss_pred CCCeEEEe-cCCEEEEEEEcCCC--CCceEEEecccEEEEEEecC---CC----------ceEEEEEeccccccCCCceE
Q 031955 4 HPEVLWAQ-RSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGV---QG----------ELFDFSLELFGKTLPEKCKT 67 (150)
Q Consensus 4 ~P~v~WaQ-~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~---~~----------~~y~~~leLf~~I~pe~S~~ 67 (150)
.|.+.=++ +.+.+.|++.||++ +++.|.++.+ .|++++... .+ ..|.-.+.|-..|+++ +-
T Consensus 32 ~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~-~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A 108 (142)
T PRK11597 32 FPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGT-RLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GA 108 (142)
T ss_pred CCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECC-EEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cC
Confidence 47788887 46799999999997 4788888777 889988631 11 2466677888899997 57
Q ss_pred EecCCeEEEEEEec
Q 031955 68 KVGLRNIICSVQKE 81 (150)
Q Consensus 68 ~i~~~kI~i~L~K~ 81 (150)
++.++-+.|+|.|.
T Consensus 109 ~~~nGVL~I~lPK~ 122 (142)
T PRK11597 109 TFVNGLLHIDLIRN 122 (142)
T ss_pred EEcCCEEEEEEecc
Confidence 78889999999986
No 39
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=95.44 E-value=0.13 Score=42.49 Aligned_cols=64 Identities=16% Similarity=0.274 Sum_probs=51.1
Q ss_pred cCCEEEEEEEcCCC---CCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEec--CCeEEEEEE
Q 031955 12 RSDKVYLTISLPDA---KDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVG--LRNIICSVQ 79 (150)
Q Consensus 12 ~~~~V~ltV~l~d~---kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~--~~kI~i~L~ 79 (150)
+.+.+.|+|.||++ +++.++++++ .|.+.+. +..|.|++.|-.+|+++.++.+.. .+.+.|+|.
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~-~l~l~~~---~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSED-RLSLSSP---KPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCC-EEEEEeC---CCceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 46789999999986 6788999998 6677663 337999999999999998866654 477888873
No 40
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=95.16 E-value=0.16 Score=34.57 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=53.5
Q ss_pred cCCEEEEEEEcCCC--CCceEEEecccEEEEEEecC---C--C---ceEEEEEeccccccCCCceEEec-CCeEEEEEEe
Q 031955 12 RSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGV---Q--G---ELFDFSLELFGKTLPEKCKTKVG-LRNIICSVQK 80 (150)
Q Consensus 12 ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~---~--~---~~y~~~leLf~~I~pe~S~~~i~-~~kI~i~L~K 80 (150)
..+...|++.+|+. ++++|++..+ .|++++... . + .+|.-.+.|-..|+++.-+.++. ++.+.|+|.|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~-~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDN-LLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 35678899999997 4788888877 889988631 1 1 35666788999999999999996 8989998864
No 41
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=93.75 E-value=0.58 Score=31.99 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=49.6
Q ss_pred CCEEEEEEEcCCC--CCceEEEecccEEEEEEecC-----C-C------ceEEEEEeccccccCCCceEEe-cCCeEEEE
Q 031955 13 SDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGV-----Q-G------ELFDFSLELFGKTLPEKCKTKV-GLRNIICS 77 (150)
Q Consensus 13 ~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~-----~-~------~~y~~~leLf~~I~pe~S~~~i-~~~kI~i~ 77 (150)
.+.+.|++.+|+. +++.|++..+ .|++++... . + ..|.-.+.|-..|+++..+..+ .++.+.|.
T Consensus 6 ~d~~~v~~dlpG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 84 (87)
T cd06481 6 KEGFSLKLDVRGFSPEDLSVRVDGR-KLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR 84 (87)
T ss_pred cceEEEEEECCCCChHHeEEEEECC-EEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence 5678999999986 5788888877 889988621 0 1 2466677888999999888888 67777777
Q ss_pred E
Q 031955 78 V 78 (150)
Q Consensus 78 L 78 (150)
+
T Consensus 85 ~ 85 (87)
T cd06481 85 A 85 (87)
T ss_pred c
Confidence 5
No 42
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=91.19 E-value=2 Score=29.27 Aligned_cols=65 Identities=8% Similarity=0.016 Sum_probs=48.5
Q ss_pred cCCEEEEEEEcCCC--CCceEEEecccEEEEEEecC-----CC---ceEEEEEeccccccCCCceEEe-cCCeEEEE
Q 031955 12 RSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGV-----QG---ELFDFSLELFGKTLPEKCKTKV-GLRNIICS 77 (150)
Q Consensus 12 ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~-----~~---~~y~~~leLf~~I~pe~S~~~i-~~~kI~i~ 77 (150)
+.+...|++.||+. ++++|++..+ .|++++... .+ +.|.-.+.|-..|+++.-+.++ ..+-+.|.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~~~-~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 5 GKPMFQILLDVVQFRPEDIIIQVFEG-WLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred CCceEEEEEEcCCCCHHHeEEEEECC-EEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 46788999999997 5788888888 889988631 11 2456667788999999888876 46666654
No 43
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=89.44 E-value=5.4 Score=31.23 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=52.2
Q ss_pred eEEEecCC-EEEEEEEcCCCC--C-ceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecCCeEEEEEEecC
Q 031955 7 VLWAQRSD-KVYLTISLPDAK--D-ISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKEE 82 (150)
Q Consensus 7 v~WaQ~~~-~V~ltV~l~d~k--d-~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K~~ 82 (150)
+.=.++.+ ++.|...||++. + +.|.+..+ ...+.+. .+..|.-.+.|-.+ .++..++++.++-++|+|++.+
T Consensus 94 vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d-~~~L~i~--~~~~~~krv~L~~~-~~e~~~~t~nNgILEIri~~~~ 169 (177)
T PF05455_consen 94 VDTRERDDGELVVVADLPGVSDDDAIDVTLDDD-EGALTIR--VGEKYLKRVALPWP-DPEITSATFNNGILEIRIRRTE 169 (177)
T ss_pred eeeEecCCCcEEEEEeCCCCCcccceeeEeecC-CceEEEe--cCCceEeeEecCCC-ccceeeEEEeCceEEEEEeecC
Confidence 33345566 688999999984 4 67888765 3344443 23446567888877 5777788899999999999977
Q ss_pred C
Q 031955 83 K 83 (150)
Q Consensus 83 ~ 83 (150)
.
T Consensus 170 ~ 170 (177)
T PF05455_consen 170 E 170 (177)
T ss_pred C
Confidence 4
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=88.35 E-value=4.6 Score=27.73 Aligned_cols=63 Identities=16% Similarity=0.061 Sum_probs=45.6
Q ss_pred CCEEEEEEEcCCC--CCceEEEecccEEEEEEecC-----CC------ceEEEEEeccccccCCCceEEecCC-eEEE
Q 031955 13 SDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGV-----QG------ELFDFSLELFGKTLPEKCKTKVGLR-NIIC 76 (150)
Q Consensus 13 ~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~-----~~------~~y~~~leLf~~I~pe~S~~~i~~~-kI~i 76 (150)
++.++|++.||+. +++.|++..+ .|++++... .+ ..|.=.+.|-..|++++-+.++.+. .+.|
T Consensus 7 ~~~~~v~adlPG~~kedI~V~v~~~-~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 7 SSNVLASVDVCGFEPDQVKVKVKDG-KVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred CCEEEEEEECCCCCHHHeEEEEECC-EEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 5689999999997 4788888876 889988631 11 1234456788889999888777754 5554
No 45
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=78.83 E-value=19 Score=24.98 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=49.2
Q ss_pred cCCEEEEEEEcCCC--CCceEEEecccEEEEEEecC-----CC---ceEEEEEeccccccCCCceEEec-CCeEEEEE
Q 031955 12 RSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGV-----QG---ELFDFSLELFGKTLPEKCKTKVG-LRNIICSV 78 (150)
Q Consensus 12 ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~-----~~---~~y~~~leLf~~I~pe~S~~~i~-~~kI~i~L 78 (150)
+.+.-.|++.+.+. +++.|++..+ .|+++++-. +| +.|.-.+.|-..|+++.-+..+. .+.+.|.+
T Consensus 13 ~~~~f~v~ldv~gF~pEDL~Vkv~~~-~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 13 SSEPWKVCVNVHSFKPEELTVKTKDG-FVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCcEEEEEEeCCCCHHHcEEEEECC-EEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 44566788888886 5788998877 889988731 11 45777788999999998888887 57666654
No 46
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.25 E-value=6.5 Score=34.78 Aligned_cols=81 Identities=17% Similarity=0.121 Sum_probs=58.4
Q ss_pred CCCCeEEEecCCEEEEEEEcCCCCCceEEE--ecccEEEEEEecCCCceEEEEEeccccccCCCc---eEEecCCeEEEE
Q 031955 3 RHPEVLWAQRSDKVYLTISLPDAKDISVKC--EPQGIFGFSAVGVQGELFDFSLELFGKTLPEKC---KTKVGLRNIICS 77 (150)
Q Consensus 3 ~~P~v~WaQ~~~~V~ltV~l~d~kd~~V~~--~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S---~~~i~~~kI~i~ 77 (150)
++|++.-.|..+.++|.|..|-.+-.++.+ ..+ .+.|++ .+|-+.+.+-+.+..+.. .|-..++.+.|.
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~n-m~~f~~-----~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK 75 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAAN-MASFSA-----GPYFLRLAGPGMVEDDARPNASYDAKDGYAHVK 75 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHhh-hhhhcc-----chhHHhhcCcchhhhhccccCccccccceeEEe
Confidence 589999999999999999999554444444 344 556665 257677777777777654 355667899999
Q ss_pred EEecCCC-cccce
Q 031955 78 VQKEEKG-WWKRL 89 (150)
Q Consensus 78 L~K~~~~-~W~rL 89 (150)
+.|..++ +.+-|
T Consensus 76 ~~K~~~~e~F~~L 88 (466)
T KOG3247|consen 76 VPKFHPGEHFSDL 88 (466)
T ss_pred ecCCCccccccch
Confidence 9997765 55543
No 47
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=46.56 E-value=63 Score=25.27 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=58.6
Q ss_pred CeEE--EecCCEEEEEEEcCCC--CCceEEEecccEEEEEEecC-------C----------CceEEEEEeccccccCCC
Q 031955 6 EVLW--AQRSDKVYLTISLPDA--KDISVKCEPQGIFGFSAVGV-------Q----------GELFDFSLELFGKTLPEK 64 (150)
Q Consensus 6 ~v~W--aQ~~~~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~-------~----------~~~y~~~leLf~~I~pe~ 64 (150)
++.| ..+.+...+.+.+|+. .+++|.+++.+.+.+++... . -..|.-.+.|-..|+.++
T Consensus 84 ~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ 163 (196)
T KOG0710|consen 84 RVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDE 163 (196)
T ss_pred cCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHH
Confidence 5667 7888999999999986 57888888875567776531 0 024556677888888887
Q ss_pred ceEEecCCeEEEEEEecCC
Q 031955 65 CKTKVGLRNIICSVQKEEK 83 (150)
Q Consensus 65 S~~~i~~~kI~i~L~K~~~ 83 (150)
-+..+.++-+.|++.|..+
T Consensus 164 ikA~~~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 164 IKAEMENGVLTVVVPKLEP 182 (196)
T ss_pred HHHHhhCCeEEEEEecccc
Confidence 7777888888999988765
No 48
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.88 E-value=98 Score=27.22 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=23.1
Q ss_pred EEeccccccCCCceEEecCCeEEEEEEecCC
Q 031955 53 SLELFGKTLPEKCKTKVGLRNIICSVQKEEK 83 (150)
Q Consensus 53 ~leLf~~I~pe~S~~~i~~~kI~i~L~K~~~ 83 (150)
+.+|-.+..|+.-++++.++++.+++.|+..
T Consensus 107 evkl~ve~l~~~ltvsV~P~~~~Vti~kk~t 137 (403)
T COG4856 107 EVKLQVEGLPDGLTVSVNPEKATVTIEKKVT 137 (403)
T ss_pred EeeeEeecCCCCceEEEccceeEEEEeeeeE
Confidence 3344567778888888888888888887654
No 49
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=43.44 E-value=46 Score=21.90 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=30.9
Q ss_pred ceEEEEEeccccccCCCceEEecCCeEEEEEEecCC
Q 031955 48 ELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKEEK 83 (150)
Q Consensus 48 ~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K~~~ 83 (150)
..|.+.++|-| +.|++-.+.+.++.+.|.-++...
T Consensus 7 ~~~~v~~dlpG-~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 7 EKFQVTLDVKG-FKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eeEEEEEECCC-CCHHHcEEEEECCEEEEEEEEeee
Confidence 57999999998 899999999999999999987653
No 50
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=41.93 E-value=59 Score=20.71 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=31.6
Q ss_pred CceEEEEEeccccccCCCceEEecCCeEEEEEEecCCC
Q 031955 47 GELFDFSLELFGKTLPEKCKTKVGLRNIICSVQKEEKG 84 (150)
Q Consensus 47 ~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K~~~~ 84 (150)
+..|.+.++|-+ +.+++-.+++.++.+.|.-++....
T Consensus 6 ~~~~~i~~~lpg-~~~~~i~V~v~~~~l~I~g~~~~~~ 42 (88)
T cd06464 6 DDAYVVEADLPG-FKKEDIKVEVEDGVLTISGEREEEE 42 (88)
T ss_pred CCEEEEEEECCC-CCHHHeEEEEECCEEEEEEEEeccc
Confidence 467899999998 8999889999999999998887643
No 51
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=40.19 E-value=8.3 Score=23.89 Aligned_cols=10 Identities=60% Similarity=1.388 Sum_probs=8.6
Q ss_pred eecCCccccC
Q 031955 101 KVDWNKWCDE 110 (150)
Q Consensus 101 k~Dwdkw~de 110 (150)
++||++|+.-
T Consensus 17 kvdWd~wvSf 26 (49)
T PF06543_consen 17 KVDWDKWVSF 26 (49)
T ss_pred ccchHHheee
Confidence 5999999965
No 52
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=35.30 E-value=2.3e+02 Score=22.59 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=34.8
Q ss_pred CCeEEEecCC---EEEEEEEcCCCCCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEE
Q 031955 5 PEVLWAQRSD---KVYLTISLPDAKDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTK 68 (150)
Q Consensus 5 P~v~WaQ~~~---~V~ltV~l~d~kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~ 68 (150)
|-+.|.-|+. ..+++|...+. -.+.+++. ||.|.+.......+....-+.+.|.+.+|-+.
T Consensus 51 ~V~~flhr~~~~~~~F~~i~te~g--~~l~LTp~-HLI~v~~~~~~~~~~~~~vfA~~V~~Gd~v~~ 114 (217)
T PF01079_consen 51 PVIMFLHRDPEQRAEFVVIETEDG--RSLTLTPN-HLIFVADCNGSESSNFRAVFASDVRVGDCVLV 114 (217)
T ss_dssp EEEEEEEEEEEEEEEEEEEEETTS---EEEE-TT--EEEEEETTTTEE---EEEEGGG--TT-EEEE
T ss_pred eEEEEeccCccccEEEEEEEcCCC--CeEEecCC-cEEEEecCCCCcccccceeehhhCCCCCEEEE
Confidence 4445554443 46666666554 78999999 88898875223333457778999999998887
No 53
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=33.96 E-value=1.2e+02 Score=19.84 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=21.4
Q ss_pred eEEEecccEEEEEEecCCCceEEEEEe-cccccc
Q 031955 29 SVKCEPQGIFGFSAVGVQGELFDFSLE-LFGKTL 61 (150)
Q Consensus 29 ~V~~~~~~~l~f~~~~~~~~~y~~~le-Lf~~I~ 61 (150)
+|+++.++...+.+...+|+.|++.++ --+.|.
T Consensus 47 ~ve~~~~g~yev~~~~~dG~~~ev~vD~~tG~V~ 80 (83)
T PF13670_consen 47 EVEFDDDGCYEVEARDKDGKKVEVYVDPATGEVV 80 (83)
T ss_pred EEEEcCCCEEEEEEEECCCCEEEEEEcCCCCeEe
Confidence 577755556677765567888888876 444443
No 54
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=30.68 E-value=1.5e+02 Score=21.44 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=26.0
Q ss_pred CCceEEEecccEEEEEEecCCCceEEEEEeccccccCCCceEEecCCeEEEEEEe
Q 031955 26 KDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKTLPEKCKTKVGLRNIICSVQK 80 (150)
Q Consensus 26 kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I~pe~S~~~i~~~kI~i~L~K 80 (150)
..+.++|.++|.|.++... ++.. +-...+|++.+++|.++|+=
T Consensus 34 ~~~~leF~~dGKL~v~~gn-ng~~-----------~~~~Gty~L~G~kLtL~~~p 76 (111)
T TIGR03066 34 DDVVIEFAKDGKLVVTIGE-KGKE-----------VKADGTYKLDGNKLTLTLKA 76 (111)
T ss_pred CceEEEEcCCCeEEEecCC-CCcE-----------eccCceEEEECCEEEEEEcC
Confidence 5677888888877766532 2221 11235777777776666543
No 55
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=29.01 E-value=1.8e+02 Score=19.50 Aligned_cols=48 Identities=21% Similarity=0.462 Sum_probs=22.8
Q ss_pred EEEecCCEEEEEEEcCCC-CC--ceEEEec--ccEEEEEEec-CCCceEEEEEe
Q 031955 8 LWAQRSDKVYLTISLPDA-KD--ISVKCEP--QGIFGFSAVG-VQGELFDFSLE 55 (150)
Q Consensus 8 ~WaQ~~~~V~ltV~l~d~-kd--~~V~~~~--~~~l~f~~~~-~~~~~y~~~le 55 (150)
.||-+...|.|.++-+.. .. ..+.++. .|..++.+.+ ..|..|.+.++
T Consensus 14 vwAP~A~~V~L~l~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~ 67 (100)
T cd02860 14 LWAPTAQSVKLLLYDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYYYLYEVK 67 (100)
T ss_pred EECCCCcEEEEEEEcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcEEEEEEE
Confidence 577777777776643321 11 2233432 2333333322 24566766665
No 56
>KOG4105 consensus 6-pyruvoyl tetrahydrobiopterin synthase [Coenzyme transport and metabolism]
Probab=28.23 E-value=57 Score=24.00 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=18.6
Q ss_pred CCceEEEEEeccccccCCCce
Q 031955 46 QGELFDFSLELFGKTLPEKCK 66 (150)
Q Consensus 46 ~~~~y~~~leLf~~I~pe~S~ 66 (150)
+|++|.+.+.+.|+|+|..-.
T Consensus 44 HGHNY~v~vtvrGeiDp~tGM 64 (141)
T KOG4105|consen 44 HGHNYVVKVTVRGEIDPTTGM 64 (141)
T ss_pred CCcceEEEEEEecccCCccce
Confidence 689999999999999998543
No 57
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=24.54 E-value=2.3e+02 Score=19.21 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=22.8
Q ss_pred CEEEEEEEcCCCCCceEEEecccEEEEEEecCCCceEEEEEeccccc
Q 031955 14 DKVYLTISLPDAKDISVKCEPQGIFGFSAVGVQGELFDFSLELFGKT 60 (150)
Q Consensus 14 ~~V~ltV~l~d~kd~~V~~~~~~~l~f~~~~~~~~~y~~~leLf~~I 60 (150)
..|.|.|.+++..+..+.+.+. .|.+...+|+.|..........
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~---~f~l~d~~g~~~~~~~~~~~~~ 79 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPS---DFKLYDSDGNKYDPDFSASSND 79 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGG---GEEEE-TT--B--EEE-CCCTT
T ss_pred EEEEEEEEEEECCCCcEEeccc---ceEEEeCCCCEEcccccchhcc
Confidence 3577777788777777777766 3555444677777666544433
No 58
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=23.42 E-value=2.5e+02 Score=19.35 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=27.4
Q ss_pred CCCeEEEecCCEEEEEEEcCCCCCceEEEecccEEEEEEecC-C-CceEEEEEe
Q 031955 4 HPEVLWAQRSDKVYLTISLPDAKDISVKCEPQGIFGFSAVGV-Q-GELFDFSLE 55 (150)
Q Consensus 4 ~P~v~WaQ~~~~V~ltV~l~d~kd~~V~~~~~~~l~f~~~~~-~-~~~y~~~le 55 (150)
.|.|.|. +.....|+ .+..+.+..+|.|.|+-... + |..|.+...
T Consensus 33 ~P~i~W~-~~~~~~i~------~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~ 79 (95)
T cd05845 33 PLRIYWM-NSDLLHIT------QDERVSMGQNGNLYFANVEEQDSHPDYICHAH 79 (95)
T ss_pred CCEEEEE-CCCCcccc------ccccEEECCCceEEEEEEehhhCCCCeEEEEE
Confidence 3789998 44332222 35567777778889986532 2 336866554
No 59
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=23.39 E-value=2e+02 Score=18.01 Aligned_cols=11 Identities=18% Similarity=0.797 Sum_probs=8.2
Q ss_pred CCCeEEEecCC
Q 031955 4 HPEVLWAQRSD 14 (150)
Q Consensus 4 ~P~v~WaQ~~~ 14 (150)
.|.+.|+....
T Consensus 12 ~P~v~W~~~~~ 22 (79)
T cd05734 12 PPTIVWKHSKG 22 (79)
T ss_pred CCEEEEEECCC
Confidence 48999987544
No 60
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=21.95 E-value=3.7e+02 Score=20.64 Aligned_cols=68 Identities=12% Similarity=0.133 Sum_probs=47.4
Q ss_pred EEEEEEEcCCC--CCceEEEecccEEEEEEecC-----CC---ceEEEEEeccccccCCCceEEecC-CeEEEEEEecCC
Q 031955 15 KVYLTISLPDA--KDISVKCEPQGIFGFSAVGV-----QG---ELFDFSLELFGKTLPEKCKTKVGL-RNIICSVQKEEK 83 (150)
Q Consensus 15 ~V~ltV~l~d~--kd~~V~~~~~~~l~f~~~~~-----~~---~~y~~~leLf~~I~pe~S~~~i~~-~kI~i~L~K~~~ 83 (150)
..-|.+.+..- ..++|++..+ .|.+.++-. +| +.|.=.+.|-.-|+|+.-+-++.. +.+.|...|...
T Consensus 73 ~F~V~lDV~~F~PeEl~Vk~~~~-~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 73 KFEVNLDVHQFKPEELKVKTDDN-TLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred cEEEEEEcccCcccceEEEeCCC-EEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCCC
Confidence 34556666653 5777888777 778887621 22 467777889999999988887775 767777766543
No 61
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.19 E-value=4.5e+02 Score=24.27 Aligned_cols=54 Identities=19% Similarity=0.435 Sum_probs=34.9
Q ss_pred CCCCeEEEecCCEEEEEEEcCCC-----CCceEEEecc----cEEEEEEecCCCceEEEEEec
Q 031955 3 RHPEVLWAQRSDKVYLTISLPDA-----KDISVKCEPQ----GIFGFSAVGVQGELFDFSLEL 56 (150)
Q Consensus 3 ~~P~v~WaQ~~~~V~ltV~l~d~-----kd~~V~~~~~----~~l~f~~~~~~~~~y~~~leL 56 (150)
.++.+.|.-+.+.|+|.+++... .++++..+.+ |.+.|+........+.+.|-|
T Consensus 371 s~g~yiY~~~~d~lyvnLy~~S~~~l~~~~v~irqet~yPw~g~v~ltv~~~~p~~~tlaLRl 433 (589)
T COG3533 371 SIGDYIYTRADDALYVNLYIASTADLPGDDVQIRQETNYPWSGQVKLTVERAQPVLFTLALRL 433 (589)
T ss_pred hccceEEccCCCEEEEEEeecccccccccceEEEeccCCCCcCeeEEEEecCCCceEEEEEec
Confidence 45789999999999999988853 3455555432 355666654444555555544
Done!