BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>031957
MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKF
SQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYIVFPGR
FIYTQRLKGANVNDKVCNFCAFSPLQFLII

High Scoring Gene Products

Symbol, full name Information P value
RPL21C
AT1G35680 		protein from Arabidopsis thaliana 5.6e-13

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031957
        (150 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2014711 - symbol:RPL21C "chloroplast ribosomal...   171  5.6e-13   1


>TAIR|locus:2014711 [details] [associations]
            symbol:RPL21C "chloroplast ribosomal protein L21"
            species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003735 "structural constituent of ribosome"
            evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=ISS] [GO:0006412
            "translation" evidence=ISS] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP;RCA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0009658 "chloroplast organization" evidence=IMP] [GO:0009790
            "embryo development" evidence=IMP] [GO:0009793 "embryo development
            ending in seed dormancy" evidence=IMP] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA;IMP] [GO:0006364 "rRNA
            processing" evidence=RCA] [GO:0009902 "chloroplast relocation"
            evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
            [GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
            [GO:0042742 "defense response to bacterium" evidence=RCA]
            [GO:0042793 "transcription from plastid promoter" evidence=RCA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=RCA] InterPro:IPR001787 InterPro:IPR018258 Pfam:PF00829
            PROSITE:PS01169 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005634 GO:GO:0009570 GO:GO:0006412 GO:GO:0009409
            GO:GO:0009941 GO:GO:0009658 GO:GO:0009793 GO:GO:0010027
            GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:AC007887 EMBL:Z49787
            EMBL:Y15964 EMBL:AY058118 EMBL:AF428363 EMBL:AY116944
            IPI:IPI00532845 PIR:S71282 RefSeq:NP_174808.1 UniGene:At.23722
            ProteinModelPortal:P51412 SMR:P51412 STRING:P51412 PaxDb:P51412
            PRIDE:P51412 EnsemblPlants:AT1G35680.1 GeneID:840472
            KEGG:ath:AT1G35680 GeneFarm:195 TAIR:At1g35680 eggNOG:COG0261
            HOGENOM:HOG000238965 InParanoid:P51412 KO:K02888 OMA:TNATVHA
            PhylomeDB:P51412 ProtClustDB:CLSN2914377 Genevestigator:P51412
            GermOnline:AT1G35680 PANTHER:PTHR21349 TIGRFAMs:TIGR00061
            Uniprot:P51412
        Length = 220

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 41/119 (34%), Positives = 60/119 (50%)

Query:    19 HCKISCQNPNPHPQLSLSKSKLCSFPSPKL-YTRPTFSFTHKFSQTXXXXXXXXXXXXXX 77
             HC ++ +  +     SLSK  L +   P   +  P+ + T + + T              
Sbjct:    17 HCNVNSRRSSTI-LCSLSKPSL-NLAKPLTGFLSPSTASTSRTAFTVAPKFAESVVEAEP 74

Query:    78 XXXXXXXXXXXXXXXXXKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKV 136
                              +E+ KREEIFAV+M+G RQYIVFPGR++YTQRLK ANV+D++
Sbjct:    75 ETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLYTQRLKDANVDDQI 133


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.138   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      150       102   0.00091  102 3  11 22  0.49    29
                                                     29  0.48    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  530 (56 KB)
  Total size of DFA:  116 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.40u 0.11s 10.51t   Elapsed:  00:00:01
  Total cpu time:  10.40u 0.11s 10.51t   Elapsed:  00:00:01
  Start:  Fri May 10 08:40:22 2013   End:  Fri May 10 08:40:23 2013

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