BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031957
(150 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51412|RK21_ARATH 50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana
GN=RPL21 PE=2 SV=1
Length = 220
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 88/142 (61%), Gaps = 17/142 (11%)
Query: 4 ASSCATLALCSSLTSHCKISCQNPNP------HPQLSLSKSKLCSFPSPKL--YTRPTFS 55
ASS ATL+LCS+ ++HC ++ + + P L+L+K L F SP +R F+
Sbjct: 2 ASSSATLSLCSTFSAHCNVNSRRSSTILCSLSKPSLNLAK-PLTGFLSPSTASTSRTAFT 60
Query: 56 FTHKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYI 115
KF++ S E EPE + EA ++V E +E+ KREEIFAV+M+G RQYI
Sbjct: 61 VAPKFAE------SVVEAEPETT-DIEAVVVSDVSE-VTEEKAKREEIFAVIMVGGRQYI 112
Query: 116 VFPGRFIYTQRLKGANVNDKVC 137
VFPGR++YTQRLK ANV+D++
Sbjct: 113 VFPGRYLYTQRLKDANVDDQIV 134
>sp|P24613|RK21_SPIOL 50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea
GN=RPL21 PE=1 SV=1
Length = 256
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/40 (82%), Positives = 36/40 (90%)
Query: 98 PKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKVC 137
P REEIFAVV+IGSRQYIV PGR+IYTQRLKGA VNDK+
Sbjct: 118 PPREEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIV 157
>sp|Q8L9A0|RM21_ARATH 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana
GN=RPL21M PE=2 SV=1
Length = 270
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 101 EEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKV 136
E +FA+V IGS Q+ V G I+T++LK ++NDK+
Sbjct: 138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKL 173
>sp|Q21H61|IF2_SACD2 Translation initiation factor IF-2 OS=Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024) GN=infB PE=3 SV=1
Length = 908
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 67 PVSEPEV--EPEAALEAEAEPTTEVVESAAKEEP 98
PV EPEV EPE E EP E +E A EEP
Sbjct: 126 PVQEPEVAAEPEVVEAPEPEPVVEAIEEAPVEEP 159
>sp|Q0SRU1|SYFA_CLOPS Phenylalanine--tRNA ligase alpha subunit OS=Clostridium perfringens
(strain SM101 / Type A) GN=pheS PE=3 SV=1
Length = 339
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 60 FSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYI 115
S+ E P V + E LEAE E T+ V+ A K+E + E+ + M G +Q I
Sbjct: 49 LSKEERPIVGKLANEVREVLEAELEAVTKAVKEAEKQEKLKNEVIDISMPGKKQTI 104
>sp|Q0TP72|SYFA_CLOP1 Phenylalanine--tRNA ligase alpha subunit OS=Clostridium perfringens
(strain ATCC 13124 / NCTC 8237 / Type A) GN=pheS PE=3
SV=1
Length = 339
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 60 FSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYI 115
S+ E P V + E LEAE E T+ V+ A K+E + E+ + M G +Q I
Sbjct: 49 LSKEERPIVGKLANEVREVLEAELEAVTKAVKEAEKQEKLKNEVIDISMPGKKQTI 104
>sp|Q8XJ75|SYFA_CLOPE Phenylalanine--tRNA ligase alpha subunit OS=Clostridium perfringens
(strain 13 / Type A) GN=pheS PE=3 SV=1
Length = 341
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 60 FSQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEIFAVVMIGSRQYI 115
S+ E P V + E LEAE E T+ V+ A K+E + E+ + M G +Q I
Sbjct: 51 LSKEERPIVGKLANEVREVLEAELEAITKAVKEAEKQEKLKNEVIDISMPGKKQTI 106
>sp|A1BDF1|IF2_CHLPD Translation initiation factor IF-2 OS=Chlorobium phaeobacteroides
(strain DSM 266) GN=infB PE=3 SV=1
Length = 991
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 62 QTEPPPVSEPEVEPEAALEAEAEPTTE---VVESAAKEEPKREEIFAV 106
QTEP +EPEV+ E A + E E TE E AA+ EP + AV
Sbjct: 162 QTEPAVQTEPEVQTEPAAQTEPEVQTEPAAQTEPAAQTEPAAQTESAV 209
>sp|Q11XX4|RL21_CYTH3 50S ribosomal protein L21 OS=Cytophaga hutchinsonii (strain ATCC
33406 / NCIMB 9469) GN=rplU PE=3 SV=1
Length = 102
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGA 130
++A+V IG +QY V FIY RL+GA
Sbjct: 1 MYAIVEIGGKQYKVEKDHFIYVYRLEGA 28
>sp|P58002|IF2_LACLA Translation initiation factor IF-2 OS=Lactococcus lactis subsp.
lactis (strain IL1403) GN=infB PE=3 SV=1
Length = 944
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 63 TEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEI 103
TE P SEP + E +EA++EP E VE+ + E+
Sbjct: 126 TEKPKASEPVKKAEPKVEAKSEPKVEKVETKDNTATSKAEV 166
>sp|Q2SS76|RL21_MYCCT 50S ribosomal protein L21 OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=rplU PE=3 SV=1
Length = 100
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDKVC 137
+FA++ G +Q V PG+ I+ +++KG VNDK+
Sbjct: 1 MFAIIKTGGKQVKVEPGQEIFIEKIKG-EVNDKIA 34
>sp|Q12797|ASPH_HUMAN Aspartyl/asparaginyl beta-hydroxylase OS=Homo sapiens GN=ASPH PE=1
SV=3
Length = 758
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 65 PPPVSEPEVEPEAALEAEAEPTTEVVESAAKEE 97
PP +EP EPE + EAEP +E AKE+
Sbjct: 120 PPEEAEPHTEPEEQVPVEAEPQN--IEDEAKEQ 150
>sp|Q8WZS6|YSH1_NEUCR Endoribonuclease ysh-1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ysh-1
PE=3 SV=1
Length = 850
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 1 MAAASSCATLALCSSLTSHCKISCQNPNPHPQLSLSKSKLCSFPSPKLYTRPTFSFTHKF 60
+A A L + SS + + + +NP+ H L K+ + R +F
Sbjct: 667 IADAVMAVLLGIESSPAAVKRSATKNPHTHSPLPADKNPHSHLTPEDRFFRLCMFLEAQF 726
Query: 61 SQTEPPPVSEPEVEPEAALEAEAEPTTEVVESAAKEEPKREEI 103
Q P+ EP++ P PTT+ + S ++E K ++
Sbjct: 727 GQDNVSPIVEPKLPP-------LSPTTKAITSPSEETAKSSDV 762
>sp|Q65JE1|MUTL_BACLD DNA mismatch repair protein MutL OS=Bacillus licheniformis (strain
DSM 13 / ATCC 14580) GN=mutL PE=3 SV=1
Length = 636
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 31 PQLSLSKSKLCSFPSPKLYTRPTFSFTHKFSQTEPPPVSEPEVEPEAALEAEAEPTTEVV 90
P+ S S KL S + P + TEP E PEAA +AEP +
Sbjct: 374 PEPSFSAMKLSSLVKDPPPSAPVEREENVMQDTEPEWPGAEEYTPEAAPAVQAEP-EQAG 432
Query: 91 ESAAKEEPKREEIFAVVMIGSRQYIVFPGRFIYTQRLKGANVNDK 135
E+ EE +E + + IG G +I Q G + D+
Sbjct: 433 ENVQDEETPKERVPIMYPIGQMH-----GTYILAQNENGLYIIDQ 472
>sp|A6LLU6|RL21_THEM4 50S ribosomal protein L21 OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=rplU PE=3 SV=1
Length = 106
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 103 IFAVVMIGSRQYIVFPGRFIYTQRLKGAN 131
++A+V G +QY V PG+ +T+R+ G N
Sbjct: 1 MYAIVESGGKQYRVEPGKVFFTERILGKN 29
>sp|B8FCY5|IF2_DESAA Translation initiation factor IF-2 OS=Desulfatibacillum
alkenivorans (strain AK-01) GN=infB PE=3 SV=1
Length = 1040
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 59 KFSQTEPPPVSEPEVEPEAALEAEAE---PTTEVVESAAKEEPK 99
K + T P EPE +PE EA+AE P E AKEE K
Sbjct: 219 KAADTPAEPQEEPEAKPEIKAEAKAEEGAPEKPAEEPKAKEEQK 262
>sp|Q00647|MYO1_EMENI Myosin-1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS
112.46 / NRRL 194 / M139) GN=myoA PE=1 SV=2
Length = 1249
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 38 SKLCSFPSPKLYTRPTFSFTHKFSQTEPPPVSEPEVEPEAALEAEAEPTT 87
SKL S P P+ RP T + + +P P S P +P AA+ A T+
Sbjct: 1008 SKLASRPVPE--RRPIPQPTPQTAAAQPTPASRPVPQPVAAVAASHSRTS 1055
>sp|Q21LB1|MUTS_SACD2 DNA mismatch repair protein MutS OS=Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024) GN=mutS PE=3 SV=1
Length = 887
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 27 PNPHPQ-LSLSKSKLCSFPSP----------KLYTRPTFSFTHKFSQTEPPPVSEPEVEP 75
P P + L +KL PS +L +PT H+F EP + EP EP
Sbjct: 771 PGPASKSFGLQVAKLAGIPSNVIADAGGHLRRLEAQPTVDTPHQFPAPEPIALQEPVAEP 830
Query: 76 E 76
E
Sbjct: 831 E 831
>sp|Q8PW41|RS2_METMA 30S ribosomal protein S2 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps2 PE=3 SV=1
Length = 224
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 69 SEPEVEPEAALEAEAEPTTEVVESAAKEEPK-----REEIFAVVMIGSRQYIVFPGRFIY 123
++P E EAA++ E+ P + ++AKE E + A V IG++Q RF+Y
Sbjct: 4 AKPAPEKEAAVKTESVPVADDEAASAKEGSTSLVSIDEYLAAGVHIGTQQKTQDMMRFVY 63
Query: 124 TQRLKGANVND 134
R G V D
Sbjct: 64 RVRTDGLYVLD 74
>sp|P10201|UL17_HHV11 Virion-packaging protein UL17 OS=Human herpesvirus 1 (strain 17)
GN=UL17 PE=1 SV=1
Length = 703
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 44 PSPKLYTRPTFSFTHKFSQTEPPPV--SEPEVEPEAALEAEAEPTTEVVESAAKEEPKRE 101
P P+ RP H + +PP V S+P + PE L A TT + + +E E
Sbjct: 206 PRPQPLARP-----HAGAPADPPIVGASDPPISPEEQLTAPGGDTTAAQDVSIAQE--NE 258
Query: 102 EIFAVV 107
EI A+V
Sbjct: 259 EILALV 264
>sp|Q24629|REF2P_DROSI Protein ref(2)P OS=Drosophila simulans GN=ref(2)P PE=4 SV=1
Length = 599
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 62 QTEPPPVSEPEVEPEAALEAEAEPT 86
QTE PP +EP V E A E+EA+PT
Sbjct: 261 QTESPPQAEPTVTAEKATESEAKPT 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,531,139
Number of Sequences: 539616
Number of extensions: 2209713
Number of successful extensions: 12004
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 11040
Number of HSP's gapped (non-prelim): 710
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)